Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 229 of 290
Found at i:74621016 original size:80 final size:80
Alignment explanation
Indices: 74620853--74621030 Score: 182
Period size: 80 Copynumber: 2.2 Consensus size: 80
74620843 TTGAATGATG
* * *
74620853 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
74620918 GTGCAAGTTACTAAA
66 GAACAAGTTACTAAA
* * * * *
74620933 TCCGGGTTAAGTCCCGAAGGCAATTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-ATTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
* * *
74620996 TTGAACGAGTTGCTATA
64 TTGAACAAGTTACTAAA
* *
74621013 TCC-GGTTAAATTCCGAAG
1 TCCGGGTTAAGTCCCGAAG
74621031 AGTTTGGTTC
Statistics
Matches: 81, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
79 14 0.17
80 61 0.75
81 6 0.07
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACAAGTTACTAAA
Found at i:74628304 original size:39 final size:40
Alignment explanation
Indices: 74628204--74628347 Score: 172
Period size: 39 Copynumber: 3.6 Consensus size: 40
74628194 TTGAATGATG
* * *
74628204 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAAA
*
74628244 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAAGTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAGTACTAAA
*
74628284 TCCGGG-TAAGTCCCGAAGGCATTTGTGCG-AGTTACTTAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAAA
*
74628323 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
74628348 AGGCCATTGA
Statistics
Matches: 92, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
38 8 0.09
39 45 0.49
40 27 0.29
41 12 0.13
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAAA
Found at i:74639947 original size:34 final size:34
Alignment explanation
Indices: 74639908--74639974 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
74639898 TATGAAAAGT
*
74639908 ATGAATTCAAATATGTTATGTTCATGAAATCTAC
1 ATGAATTCAAATATGCTATGTTCATGAAATCTAC
*
74639942 ATGAATTCAAATGTGCTATGTTCATGAAATCTA
1 ATGAATTCAAATATGCTATGTTCATGAAATCTA
74639975 TATTACCATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.37
Consensus pattern (34 bp):
ATGAATTCAAATATGCTATGTTCATGAAATCTAC
Found at i:74641939 original size:16 final size:16
Alignment explanation
Indices: 74641918--74641950 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
74641908 GGGATATTTG
74641918 ATAAATGATAAAACTA
1 ATAAATGATAAAACTA
74641934 ATAAATGATAAAACTA
1 ATAAATGATAAAACTA
74641950 A
1 A
74641951 CATAATTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.64, C:0.06, G:0.06, T:0.24
Consensus pattern (16 bp):
ATAAATGATAAAACTA
Found at i:74652604 original size:79 final size:81
Alignment explanation
Indices: 74652468--74652652 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
74652458 TTGAATGATG
*
74652468 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
74652532 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * * **
74652547 TTCCGGGTTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
74652609 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
74652627 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
74652653 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 32 0.36
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:74652659 original size:40 final size:40
Alignment explanation
Indices: 74652468--74652652 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
74652458 TTGAATGATG
* * * *
74652468 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
74652508 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
74652548 TCCGGGTTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
74652587 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
74652628 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
74652653 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
39 36 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:74652674 original size:79 final size:79
Alignment explanation
Indices: 74652521--74652685 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
74652511 GGACTAAGAT
* * **
74652521 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGTTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
74652586 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
74652600 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
74652663 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
74652679 CCGAAGG
1 CCGAAGG
74652686 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:74655308 original size:12 final size:12
Alignment explanation
Indices: 74655291--74655316 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
74655281 ATCATATAGA
74655291 TTGGTTTAACTC
1 TTGGTTTAACTC
74655303 TTGGTTTAACTC
1 TTGGTTTAACTC
74655315 TT
1 TT
74655317 TTTTATAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.54
Consensus pattern (12 bp):
TTGGTTTAACTC
Found at i:74656139 original size:16 final size:16
Alignment explanation
Indices: 74656118--74656149 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
74656108 CTAATTACTG
74656118 TAAATTGAAGTCTTTT
1 TAAATTGAAGTCTTTT
74656134 TAAATTGAAGTCTTTT
1 TAAATTGAAGTCTTTT
74656150 CGAGTCATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.12, T:0.50
Consensus pattern (16 bp):
TAAATTGAAGTCTTTT
Found at i:74658295 original size:41 final size:41
Alignment explanation
Indices: 74658174--74658284 Score: 159
Period size: 41 Copynumber: 2.7 Consensus size: 41
74658164 GTTAATTATT
* * * *
74658174 CCCTAAATTGAACATACATGCCCCTATTTGTACTTCAGTAC
1 CCCTGAATTGCACATACGTGCCCCTATTTGTACTTCGGTAC
* *
74658215 CCCTGAATTGCACATACGTGCCCTTGTTTGTACTTCGGTAC
1 CCCTGAATTGCACATACGTGCCCCTATTTGTACTTCGGTAC
*
74658256 CCCTGAATTGCACACACGTGCCCCTATTT
1 CCCTGAATTGCACATACGTGCCCCTATTT
74658285 ACACTCCGGT
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 61 1.00
ACGTcount: A:0.23, C:0.32, G:0.14, T:0.32
Consensus pattern (41 bp):
CCCTGAATTGCACATACGTGCCCCTATTTGTACTTCGGTAC
Found at i:74658304 original size:41 final size:41
Alignment explanation
Indices: 74658217--74658304 Score: 95
Period size: 41 Copynumber: 2.1 Consensus size: 41
74658207 TTCAGTACCC
* * * ** * * *
74658217 CTGAATTGCACATACGTGCCCTTGTTTGTACTTCGGTACCC
1 CTGAATTGCACACACGTGCCCCTATTTACACTCCGGTAACA
74658258 CTGAATTGCACACACGTGCCCCTATTTACACTCCGGTAACA
1 CTGAATTGCACACACGTGCCCCTATTTACACTCCGGTAACA
*
74658299 TTGAAT
1 CTGAAT
74658305 CGAGTAAAAT
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.31
Consensus pattern (41 bp):
CTGAATTGCACACACGTGCCCCTATTTACACTCCGGTAACA
Found at i:74663650 original size:7 final size:7
Alignment explanation
Indices: 74663638--74663706 Score: 63
Period size: 7 Copynumber: 9.9 Consensus size: 7
74663628 TGTCCTTTTT
74663638 TTATTTA
1 TTATTTA
74663645 TTATTTA
1 TTATTTA
74663652 TTATATTA
1 TTAT-TTA
74663660 -TATTTTA
1 TTA-TTTA
74663667 TTAATTT-
1 TT-ATTTA
* *
74663674 TTAGTTC
1 TTATTTA
74663681 TTATTTA
1 TTATTTA
*
74663688 CTATTTA
1 TTATTTA
74663695 TTA-TTA
1 TTATTTA
74663701 TTATTT
1 TTATTT
74663707 CTTTTTTGTT
Statistics
Matches: 51, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
6 9 0.18
7 33 0.65
8 8 0.16
9 1 0.02
ACGTcount: A:0.28, C:0.03, G:0.01, T:0.68
Consensus pattern (7 bp):
TTATTTA
Found at i:74664081 original size:17 final size:17
Alignment explanation
Indices: 74664051--74664091 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
74664041 GGTTAGAATT
74664051 TTATT-TTCTATTATTA
1 TTATTATTCTATTATTA
*
74664067 TTATTATTCTTTTATTA
1 TTATTATTCTATTATTA
*
74664084 GTATTATT
1 TTATTATT
74664092 ATTCTTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.68
Consensus pattern (17 bp):
TTATTATTCTATTATTA
Found at i:74664088 original size:20 final size:20
Alignment explanation
Indices: 74664059--74664098 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
74664049 TTTTATTTTC
*
74664059 TATTATTATTATTATTCTTT
1 TATTAGTATTATTATTCTTT
74664079 TATTAGTATTATTATTCTTT
1 TATTAGTATTATTATTCTTT
74664099 GTACATTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.68
Consensus pattern (20 bp):
TATTAGTATTATTATTCTTT
Found at i:74668585 original size:51 final size:52
Alignment explanation
Indices: 74668500--74668633 Score: 193
Period size: 52 Copynumber: 2.6 Consensus size: 52
74668490 CGGATACTCG
* * *
74668500 GTGGCCTGCACATAGTACCACCCTTGTAGTCAAAGCTA-CCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGGAGTCAAAGCTATCCTTCTTCACAAA
* *
74668551 GTGGCCTTCACATAGTACCATACTTGCGAG-CAAAGCTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTG-GAGTCAAAGCTATCCTTCTTCACAAA
74668603 GTGGCCTTCACATAGTACCACACTT-GAGTCA
1 GTGGCCTTCACATAGTACCACACTTGGAGTCA
74668634 CTAGTGACAT
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
50 3 0.04
51 33 0.45
52 38 0.51
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (52 bp):
GTGGCCTTCACATAGTACCACACTTGGAGTCAAAGCTATCCTTCTTCACAAA
Found at i:74671602 original size:6 final size:6
Alignment explanation
Indices: 74671591--74671673 Score: 87
Period size: 6 Copynumber: 13.5 Consensus size: 6
74671581 ATTTTATTTG
* * *
74671591 TTTTAT TTTTAT TTTTAT TTTTCT TTATAC TTTTAT TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
* *
74671639 TTTTGT TTTTAGT TGTTT-T ATTTTAA TTTTAT TTT
1 TTTTAT TTTTA-T T-TTTAT -TTTTAT TTTTAT TTT
74671674 CTTAGACTTG
Statistics
Matches: 63, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
6 57 0.90
7 3 0.05
8 3 0.05
ACGTcount: A:0.16, C:0.02, G:0.04, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:74671628 original size:24 final size:21
Alignment explanation
Indices: 74671582--74671673 Score: 84
Period size: 20 Copynumber: 4.4 Consensus size: 21
74671572 GGATCATGGA
*
74671582 TTTTATTTGTTTTATTTTTAT
1 TTTTATTTTTTTTATTTTTAT
74671603 TTTTATTTTTCTTTATACTTTTAT
1 TTTTATTTTT-TTTAT--TTTTAT
*
74671627 TTTTA---TTTTTATTTTTGT
1 TTTTATTTTTTTTATTTTTAT
* * *
74671645 TTTTAGTTGTTTTA-TTTTAA
1 TTTTATTTTTTTTATTTTTAT
74671665 TTTTATTTT
1 TTTTATTTT
74671674 CTTAGACTTG
Statistics
Matches: 58, Mismatches: 7, Indels: 13
0.74 0.09 0.17
Matches are distributed among these distances:
18 10 0.17
20 16 0.28
21 16 0.28
22 5 0.09
24 11 0.19
ACGTcount: A:0.15, C:0.02, G:0.04, T:0.78
Consensus pattern (21 bp):
TTTTATTTTTTTTATTTTTAT
Found at i:74672062 original size:16 final size:17
Alignment explanation
Indices: 74672043--74672075 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
74672033 TTTCATTAGA
74672043 ATGA-ACTTTTGTTGAT
1 ATGAGACTTTTGTTGAT
*
74672059 ATGAGATTTTTGTTGAT
1 ATGAGACTTTTGTTGAT
74672076 GTGTTTTGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.24, C:0.03, G:0.21, T:0.52
Consensus pattern (17 bp):
ATGAGACTTTTGTTGAT
Found at i:74673732 original size:19 final size:19
Alignment explanation
Indices: 74673708--74673745 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
74673698 TGAAAATTTT
74673708 ACTCAAAACAGAGGACACA
1 ACTCAAAACAGAGGACACA
* *
74673727 ACTCAAGATAGAGGACACA
1 ACTCAAAACAGAGGACACA
74673746 CGTCCATGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.50, C:0.24, G:0.18, T:0.08
Consensus pattern (19 bp):
ACTCAAAACAGAGGACACA
Found at i:74675029 original size:41 final size:40
Alignment explanation
Indices: 74674958--74675061 Score: 122
Period size: 41 Copynumber: 2.6 Consensus size: 40
74674948 ACTCGATATC
* ** *
74674958 TCGCACACTAAGTGCCTTACGTAGGT-GAAGCTATCTC-AG
1 TCGCACACTAAGTGCCATATATA-GTCGAAGCTATCTCGAA
*
74674997 TCTTGCACGCTAAGTGCCATATATAGTCGAAGCTATCTCGAA
1 TC--GCACACTAAGTGCCATATATAGTCGAAGCTATCTCGAA
74675039 TCGCACACTAAGTGCCATATATA
1 TCGCACACTAAGTGCCATATATA
74675062 TATATCCGAA
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
39 2 0.04
40 22 0.40
41 28 0.51
42 3 0.05
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATATATAGTCGAAGCTATCTCGAA
Found at i:74678945 original size:41 final size:41
Alignment explanation
Indices: 74678844--74678938 Score: 118
Period size: 41 Copynumber: 2.3 Consensus size: 41
74678834 AGTTTTTCCT
* * * *
74678844 TGAATTGCATATACGTGCCCCTGTTTGTACTTTAGTATCAT
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCAGTACCAC
* * * *
74678885 TGAATAGCACATACGTGCCCGTGTTTGTACTTCGGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCAGTACCAC
74678926 TGAATTGCACATA
1 TGAATTGCACATA
74678939 TATGCCCTTA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (41 bp):
TGAATTGCACATACGTGCCCCTGTTTGTACTTCAGTACCAC
Found at i:74683275 original size:25 final size:25
Alignment explanation
Indices: 74683247--74683329 Score: 87
Period size: 25 Copynumber: 3.4 Consensus size: 25
74683237 CAACTCGAGA
74683247 GAGCTTACCAATATTCAGCTTGTAT
1 GAGCTTACCAATATTCAGCTTGTAT
* * *
74683272 GAGCTTACCATTACTCAGCTCGTAT
1 GAGCTTACCAATATTCAGCTTGTAT
* * * *
74683297 GAGTTTACCGAT-TACAGCTTGTAA
1 GAGCTTACCAATATTCAGCTTGTAT
*
74683321 GAGCATACC
1 GAGCTTACC
74683330 GATTCAGAGC
Statistics
Matches: 46, Mismatches: 12, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
24 15 0.33
25 31 0.67
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (25 bp):
GAGCTTACCAATATTCAGCTTGTAT
Found at i:74683329 original size:24 final size:25
Alignment explanation
Indices: 74683262--74683333 Score: 85
Period size: 24 Copynumber: 2.9 Consensus size: 25
74683252 TACCAATATT
74683262 CAGCTTGTATGAGCTTACC-ATTAC
1 CAGCTTGTATGAGCTTACCGATTAC
* *
74683286 TCAGCTCGTATGAGTTTACCGATTA-
1 -CAGCTTGTATGAGCTTACCGATTAC
* *
74683311 CAGCTTGTAAGAGCATACCGATT
1 CAGCTTGTATGAGCTTACCGATT
74683334 CAGAGCTCGT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
24 19 0.47
25 17 0.43
26 4 0.10
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.32
Consensus pattern (25 bp):
CAGCTTGTATGAGCTTACCGATTAC
Found at i:74697003 original size:40 final size:40
Alignment explanation
Indices: 74696851--74696996 Score: 163
Period size: 40 Copynumber: 3.6 Consensus size: 40
74696841 TTGAATGATG
* * * *
74696851 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
74696891 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
74696931 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
74696972 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
74696997 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 78 0.88
41 10 0.11
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:74705192 original size:27 final size:27
Alignment explanation
Indices: 74705175--74705325 Score: 106
Period size: 27 Copynumber: 5.6 Consensus size: 27
74705165 ATATTAAGTC
74705175 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
74705202 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* *** ** *
74705230 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
* * **
74705257 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTCAGTGCTAT-ATAATCAACT
* * * * *
74705284 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTCAGTGCTATATAATCAACT
*
74705311 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
74705326 GTACAATTTA
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
27 80 0.77
28 24 0.23
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:74708457 original size:28 final size:28
Alignment explanation
Indices: 74708425--74708482 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
74708415 TGTCAGATAG
74708425 AACAGACAAGTGTACATTCATCGCTCGC
1 AACAGACAAGTGTACATTCATCGCTCGC
74708453 AACAGACAAGTGTACATTCATCGCTCGC
1 AACAGACAAGTGTACATTCATCGCTCGC
74708481 AA
1 AA
74708483 AGCAAACAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.34, C:0.28, G:0.17, T:0.21
Consensus pattern (28 bp):
AACAGACAAGTGTACATTCATCGCTCGC
Found at i:74713113 original size:27 final size:27
Alignment explanation
Indices: 74713096--74713246 Score: 106
Period size: 27 Copynumber: 5.6 Consensus size: 27
74713086 ATATTAAGTC
74713096 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
74713123 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* *** ** *
74713151 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
* * **
74713178 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTCAGTGCTAT-ATAATCAACT
* * * * *
74713205 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTCAGTGCTATATAATCAACT
*
74713232 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
74713247 GTACAATTTA
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
27 80 0.77
28 24 0.23
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:74716257 original size:47 final size:47
Alignment explanation
Indices: 74716084--74716358 Score: 370
Period size: 51 Copynumber: 5.6 Consensus size: 47
74716074 CAGCCAAGAG
* *
74716084 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
74716131 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
74716182 AGTATATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AG----TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
74716233 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
74716280 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
74716327 AGTGTATGTATATATGTAATAAGGCCTAATAG
1 A--G--TGTATATATGTGATAAGGCCTAATAG
74716359 TGATAAGGCC
Statistics
Matches: 209, Mismatches: 9, Indels: 16
0.89 0.04 0.07
Matches are distributed among these distances:
47 90 0.43
49 3 0.01
51 116 0.56
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:74716331 original size:94 final size:94
Alignment explanation
Indices: 74716084--74716356 Score: 366
Period size: 98 Copynumber: 2.8 Consensus size: 94
74716074 CAGCCAAGAG
* *
74716084 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTG
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA--G--TGTATATATGTG
74716149 ATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62 ATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
74716182 AGTATATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTG
1 AG----TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTG
* *
74716247 ATAAGGCCTAATAGCCGACGTGATGAATGTGAA
62 ATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
74716280 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA--G--TGTATATATGTG
74716345 ATAAGGCCTAAT
62 ATAAGGCCTAAT
74716357 AGTGATAAGG
Statistics
Matches: 157, Mismatches: 10, Indels: 16
0.86 0.05 0.09
Matches are distributed among these distances:
94 44 0.28
96 1 0.01
98 68 0.43
100 1 0.01
102 43 0.27
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (94 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:74716378 original size:161 final size:151
Alignment explanation
Indices: 74716084--74716596 Score: 655
Period size: 161 Copynumber: 3.4 Consensus size: 151
74716074 CAGCCAAGAG
*
74716084 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTG
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA--G--TGTATATATGTG
* *
74716149 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--G--TATATGT-ATATATG--TAATAAGGC
62 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATA-AGGCCTAATAAGGC
74716207 CTAATAGCCGATGTGATGAATGTGAA
126 CTAATAGCCGATGTGATGAATGTGAA
* *
74716233 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
74716298 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTAATAAGGCCTAATAGTGAT
66 GGCCTAATAGCCGATGTGATGAATGTGAAA--G--TGTATATATGTAATAAGGCC---TA---AT
*
74716363 AAGGCCTAATAGCCGACGTGATGAATGTGAA
121 AAGGCCTAATAGCCGATGTGATGAATGTGAA
*
74716394 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
74716459 GGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATG---T---G----ATAAGGCCTAAT
66 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAAGGCCTAAT
* *
74716514 GGCCGATGCGATGAATGTGAA
131 AGCCGATGTGATGAATGTGAA
* *
74716535 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
74716597 CAGGGCCGAG
Statistics
Matches: 330, Mismatches: 17, Indels: 42
0.85 0.04 0.11
Matches are distributed among these distances:
141 89 0.27
145 44 0.13
147 1 0.00
149 46 0.14
151 2 0.01
153 9 0.03
154 4 0.01
157 10 0.03
158 2 0.01
159 1 0.00
161 122 0.37
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (151 bp):
AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAAGGCCTAAT
AGCCGATGTGATGAATGTGAA
Found at i:74716388 original size:114 final size:110
Alignment explanation
Indices: 74716244--74716466 Score: 410
Period size: 114 Copynumber: 2.0 Consensus size: 110
74716234 GTGTATATGT
74716244 GTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGC
1 GTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGC
74716309 CGATGTGATGAATGTGAAAGTGTATGTATATATGTAATAAGGCCTAATA
66 CGATGTGATGAATGTGAAA--G--TGTATATATGTAATAAGGCCTAATA
74716358 GTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGC
1 GTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGC
74716423 CGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAAT
66 CGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAAT
74716467 GGCCGATGTG
Statistics
Matches: 109, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
110 24 0.22
112 1 0.01
114 84 0.77
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (110 bp):
GTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGC
CGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATA
Found at i:74716431 original size:47 final size:47
Alignment explanation
Indices: 74716358--74716647 Score: 427
Period size: 47 Copynumber: 6.2 Consensus size: 47
74716348 AGGCCTAATA
* * *
74716358 GTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGT
1 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
74716405 GTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
74716452 GTAATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATAT
1 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
74716499 GTGATAAGGCCTAATGGCCGATGCGATGAATGTGAAAGTGTATATAT
1 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
74716546 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * * * * * * *
74716593 GTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAAAGTGCATAAAT
1 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
74716640 GTGATAAG
1 GTGATAAG
74716648 TCCCGAAAGG
Statistics
Matches: 222, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 222 1.00
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
Found at i:74716554 original size:255 final size:258
Alignment explanation
Indices: 74716095--74716588 Score: 814
Period size: 255 Copynumber: 1.9 Consensus size: 258
74716085 GTGTATATGT
* *
74716095 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGATAAGGCCTAA
1 GTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAG-G-ATGTATATATGTGATAAGGCCTAA
*
74716160 TGGCCGATGTGATGAATGTGAAAGTATATGTATATATGTAATAAGGCCTAATAGCCGATGTGATG
64 TAGCCGATGTGATGAATGTGAAAG---ATGTATATATGTAATAAGGCCTAATAGCCGATGTGATG
* * *
74716225 AATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATG
126 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGCGATGAATGTGAAAGTGTATATA
74716290 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTAATAAGGCCTA
191 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTAATAAGGCCTA
74716355 ATA
256 ATA
*
74716358 GTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAA-G-TGTATATGTGTGATAAGGCCTAATA
1 GTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGGATGTATATATGTGATAAGGCCTAATA
*
74716421 GCCGATGTGATGAATGTGAAAG-TGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGT
66 GCCGATGTGATGAATGTGAAAGATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGT
* * *
74716485 GGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAAAGTGTATATATGTGA
131 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGCGATGAATGTGAAAGTGTATATATGTGA
*
74716550 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
196 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
74716589 ATATGTGACA
Statistics
Matches: 219, Mismatches: 12, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
255 138 0.63
259 45 0.21
261 1 0.00
263 35 0.16
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (258 bp):
GTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGGATGTATATATGTGATAAGGCCTAATA
GCCGATGTGATGAATGTGAAAGATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGT
GAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGCGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTAATAAGGCCTAATA
Found at i:74716822 original size:37 final size:37
Alignment explanation
Indices: 74716766--74716844 Score: 131
Period size: 37 Copynumber: 2.1 Consensus size: 37
74716756 CCGAGCTCTA
* *
74716766 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
74716803 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
74716840 AAGAC
1 AAGAC
74716845 TTCGTAATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:74725258 original size:40 final size:40
Alignment explanation
Indices: 74725110--74725260 Score: 187
Period size: 40 Copynumber: 3.7 Consensus size: 40
74725100 ACTCGAATTC
** *
74725110 TCGCACACTAAATGCCAATACATAGATGAAGCTAT-TTTAA
1 TCGCACACTAAATGCC-ATACATAGCCGAAGCTATCTTGAA
* * * *
74725150 TCCCGCACATTAAGTGCCATACATAGCCAAAGCTGTCTTGAA
1 T--CGCACACTAAATGCCATACATAGCCGAAGCTATCTTGAA
* *
74725192 TCACACACTAAGTGCCATACATAGCCGAAGCTATCTTGAA
1 TCGCACACTAAATGCCATACATAGCCGAAGCTATCTTGAA
74725232 TCGCACACTAAATGCCATACATAGCCGAA
1 TCGCACACTAAATGCCATACATAGCCGAA
74725261 TTGTCGTCCA
Statistics
Matches: 95, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
40 63 0.66
41 14 0.15
42 18 0.19
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.23
Consensus pattern (40 bp):
TCGCACACTAAATGCCATACATAGCCGAAGCTATCTTGAA
Found at i:74737237 original size:40 final size:39
Alignment explanation
Indices: 74737132--74737308 Score: 220
Period size: 40 Copynumber: 4.5 Consensus size: 39
74737122 TGGATGATAA
74737132 CCGGGCTAAGTCCCGAAGGCATTTGTGCTG-GTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTATA-T
74737172 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
74737211 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAT-AT
* *
74737252 -CGGGCTAAGTCCCAAAGGCATTTGTGCAAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATAT
* *
74737291 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
74737309 TACTTGGTTT
Statistics
Matches: 124, Mismatches: 6, Indels: 15
0.86 0.04 0.10
Matches are distributed among these distances:
38 1 0.01
39 50 0.40
40 71 0.57
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:74737297 original size:79 final size:79
Alignment explanation
Indices: 74737132--74737308 Score: 236
Period size: 79 Copynumber: 2.2 Consensus size: 79
74737122 TGGATGATAA
* *
74737132 CCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGACTAATTCCGGGCTAAGCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGACTAAATCCGGGCTAAGCCCAAAGGCATTTGT
*
74737197 GCGAGCTACTATAT
66 GCAAGCTACTATAT
*
74737211 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAAT-CGGGCTAAGTCCCAAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTG-GTGACTA-AATCCGGGCTAAG-CCCAAAGGCATT
74737274 TGTGCAAG-TAGCTATAT
63 TGTGCAAGCTA-CTATAT
* *
74737291 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
74737309 TACTTGGTTT
Statistics
Matches: 88, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
78 1 0.01
79 59 0.67
80 28 0.32
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGACTAAATCCGGGCTAAGCCCAAAGGCATTTGT
GCAAGCTACTATAT
Found at i:74742612 original size:22 final size:22
Alignment explanation
Indices: 74742568--74742619 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
74742558 TGATAATCTT
*
74742568 TAATTTATAATTATATCTATTA
1 TAATTTATAATTAAATCTATTA
*
74742590 TAATTTATATATTAAAT-TTTTA
1 TAATTTATA-ATTAAATCTATTA
74742612 TCAATTTA
1 T-AATTTA
74742620 GCATAGAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 14 0.54
23 12 0.46
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (22 bp):
TAATTTATAATTAAATCTATTA
Found at i:74742690 original size:17 final size:18
Alignment explanation
Indices: 74742664--74742697 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
74742654 TTTTTGTTTA
74742664 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
74742681 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
74742698 ATTTTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:74750050 original size:27 final size:26
Alignment explanation
Indices: 74750015--74750126 Score: 107
Period size: 27 Copynumber: 4.2 Consensus size: 26
74750005 AGCATGGCTG
*
74750015 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGACAGAGCCA
* * *
74750041 CCAGATACAGATAATCGTGCCAAAACCA
1 CCAGA-ACAGATAAT-GTGACAGAGCCA
* *
74750069 CCAGAATAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
* * *
74750096 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGACAGAGCCA
74750123 CCAG
1 CCAG
74750127 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 6 0.08
27 50 0.70
28 15 0.21
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAGAGCCA
Found at i:74752595 original size:39 final size:39
Alignment explanation
Indices: 74752551--74752748 Score: 342
Period size: 39 Copynumber: 5.1 Consensus size: 39
74752541 ATGCAAGACA
*
74752551 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
*
74752590 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
*
74752629 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
74752668 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
** *
74752707 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
74752746 CTG
1 CTG
74752749 ATAATATAAT
Statistics
Matches: 153, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 153 1.00
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
Found at i:74762255 original size:24 final size:24
Alignment explanation
Indices: 74762228--74762298 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
74762218 CTAGATTTCC
**
74762228 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
74762252 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
74762276 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
74762299 CTCCTGACAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.25, C:0.38, G:0.01, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:74767261 original size:46 final size:46
Alignment explanation
Indices: 74767211--74767383 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
74767201 TGGTTGAGCA
*
74767211 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
74767257 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
74767304 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
74767350 -CCTGAGCTCATTGAGTTGAGTCTGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
74767384 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
45 5 0.05
46 57 0.54
47 29 0.28
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:74767367 original size:93 final size:93
Alignment explanation
Indices: 74767208--74767378 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
74767198 GGATGGTTGA
* *
74767208 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCATTGAGT
74767273 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
74767301 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG-CCTGAGCTCATTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC-GAACTCATTGAG
*
74767365 TTGAGTCTGAGTTC
65 TTGAGTCCGAGTTC
74767379 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:74767645 original size:19 final size:20
Alignment explanation
Indices: 74767608--74767645 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
74767598 ATAAGGTGGT
74767608 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
74767628 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
74767646 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:74770301 original size:22 final size:20
Alignment explanation
Indices: 74770252--74770301 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 20
74770242 TATTTTAAGT
74770252 ATAATTTAATTATTTTATAA
1 ATAATTTAATTATTTTATAA
*
74770272 A-AA-TTAATTATTTTTTGACA
1 ATAATTTAATTATTTTAT-A-A
74770292 ATAATTTAAT
1 ATAATTTAAT
74770302 CGAAACGGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 12 0.48
19 3 0.12
20 3 0.12
21 2 0.08
22 5 0.20
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (20 bp):
ATAATTTAATTATTTTATAA
Found at i:74772177 original size:27 final size:27
Alignment explanation
Indices: 74772147--74772204 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
74772137 AGCATAGTTG
74772147 CCAGAAACAGTAAATGTGGCAAAGCCA
1 CCAGAAACAGTAAATGTGGCAAAGCCA
* * * * *
74772174 CCAGTAATAGTGAATGTGGCATAGTCA
1 CCAGAAACAGTAAATGTGGCAAAGCCA
74772201 CCAG
1 CCAG
74772205 TACAGAACTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.17
Consensus pattern (27 bp):
CCAGAAACAGTAAATGTGGCAAAGCCA
Found at i:74772377 original size:27 final size:27
Alignment explanation
Indices: 74772347--74772519 Score: 220
Period size: 27 Copynumber: 6.4 Consensus size: 27
74772337 GGGCATAATC
* *
74772347 GTCATTTTACCATACAGGGGTATTATG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
74772374 GTCATTTTACCCTACAGAGGCATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
74772401 GTCACTTTATCCTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
74772428 GTCATTTTACCCTACAGGGGCATTATG
1 GTCATTTTACCCTACAGGGGTATTACG
* * * *
74772455 CTCATTTTACCCTAAAAGGGTATTCCG
1 GTCATTTTACCCTACAGGGGTATTACG
*
74772482 GTCATTTTACCCTACAGGGGTATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
*
74772509 ATCATTTTACC
1 GTCATTTTACC
74772520 TATTTTGAGG
Statistics
Matches: 122, Mismatches: 24, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 122 1.00
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:74773071 original size:16 final size:17
Alignment explanation
Indices: 74773050--74773084 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
74773040 TCCTTAAGCG
*
74773050 CCCAACCTACAATC-GT
1 CCCAACATACAATCAGT
74773066 CCCAACATACAATCAGT
1 CCCAACATACAATCAGT
74773083 CC
1 CC
74773085 ATCATTTATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.34, C:0.43, G:0.06, T:0.17
Consensus pattern (17 bp):
CCCAACATACAATCAGT
Found at i:74775606 original size:27 final size:26
Alignment explanation
Indices: 74775568--74775619 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
74775558 CTCGCTGCAA
*
74775568 TCTGGTGGCTTCGCCACATATATCTGT
1 TCTGGTGACTTCGCCACA-ATATCTGT
*
74775595 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACTTCGCCACAATATCTG
74775620 GTGACTTCGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (26 bp):
TCTGGTGACTTCGCCACAATATCTGT
Found at i:74775621 original size:21 final size:21
Alignment explanation
Indices: 74775595--74775641 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
74775585 ATATATCTGT
74775595 TCTGGTGACTTCGTCACAATA
1 TCTGGTGACTTCGTCACAATA
74775616 TCTGGTGACTTCGTCACAATA
1 TCTGGTGACTTCGTCACAATA
74775637 TCTGG
1 TCTGG
74775642 CAGCCTCGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.34
Consensus pattern (21 bp):
TCTGGTGACTTCGTCACAATA
Found at i:74775702 original size:88 final size:91
Alignment explanation
Indices: 74775549--74775749 Score: 295
Period size: 88 Copynumber: 2.2 Consensus size: 91
74775539 GAGGAAGCAT
* *
74775549 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCAC-A
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATATGTTCTGGTGACTGCGTCACAA
74775613 -A-TATCTGGTGACTTCGTCACAATA
66 TATTATCTGGTGACTTCGTCACAATA
74775637 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATATGTTCTGGTGGACTAGC-T-AC
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATATGTTCTGGT-GACT-GCGTCAC
*
74775700 AATATCTGTATCTGGTGACTTCGTCATAATA
64 AATA--T-TATCTGGTGACTTCGTCACAATA
74775731 TCTGGCAGCCTCGCTGCAA
1 TCTGGCAGCCTCGCTGCAA
74775750 ATTTCTGTGG
Statistics
Matches: 102, Mismatches: 3, Indels: 10
0.89 0.03 0.09
Matches are distributed among these distances:
88 53 0.52
89 6 0.06
90 2 0.02
94 41 0.40
ACGTcount: A:0.20, C:0.26, G:0.22, T:0.31
Consensus pattern (91 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATATGTTCTGGTGACTGCGTCACAA
TATTATCTGGTGACTTCGTCACAATA
Found at i:74776652 original size:14 final size:15
Alignment explanation
Indices: 74776633--74776663 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
74776623 ATTTTAAAGA
74776633 TTAAAATT-GGTTTT
1 TTAAAATTAGGTTTT
74776647 TTAAAATTAGGTTTT
1 TTAAAATTAGGTTTT
74776662 TT
1 TT
74776664 TAGACGGTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.29, C:0.00, G:0.13, T:0.58
Consensus pattern (15 bp):
TTAAAATTAGGTTTT
Found at i:74782295 original size:28 final size:28
Alignment explanation
Indices: 74782250--74782318 Score: 84
Period size: 28 Copynumber: 2.5 Consensus size: 28
74782240 TAAACAGTGC
* *
74782250 ATACAGTAACAGTTTGGGCCTGAGCCCA
1 ATACAGTAACAGTGTGGGCCTAAGCCCA
** *
74782278 ATACAGTAGTAGTGTGGGCCTAAGCCTA
1 ATACAGTAACAGTGTGGGCCTAAGCCCA
*
74782306 ATACAGTATCAGT
1 ATACAGTAACAGT
74782319 ACAGTGTAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (28 bp):
ATACAGTAACAGTGTGGGCCTAAGCCCA
Found at i:74782701 original size:27 final size:27
Alignment explanation
Indices: 74782670--74782895 Score: 236
Period size: 27 Copynumber: 8.4 Consensus size: 27
74782660 GGCATAATCA
* * *
74782670 TCATTTTACCATACAGGGGTATTATGG
1 TCATTTTACCCTACAGGGGCATTACGG
* * *
74782697 TCATTTTACCCTATAGAGGCATTACGA
1 TCATTTTACCCTACAGGGGCATTACGG
* * *
74782724 ACATTTTACCCTATAGAGGCATTACGG
1 TCATTTTACCCTACAGGGGCATTACGG
* *
74782751 TCATTTTATCCTACAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGCATTACGG
*
74782778 TCATTTTACCCTACAAGGGCATTACGG
1 TCATTTTACCCTACAGGGGCATTACGG
* * * * *
74782805 ACAATTTAGCCTACAAGGGCATTACGA
1 TCATTTTACCCTACAGGGGCATTACGG
* * * *
74782832 TCATTTTATCCTATAGGAGTATTACGG
1 TCATTTTACCCTACAGGGGCATTACGG
** *
74782859 TCATTTTACCCTACAGGGGTTTTACGA
1 TCATTTTACCCTACAGGGGCATTACGG
74782886 TCATTTTACC
1 TCATTTTACC
74782896 TATTTTGGGG
Statistics
Matches: 166, Mismatches: 33, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 166 1.00
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGCATTACGG
Found at i:74782799 original size:81 final size:81
Alignment explanation
Indices: 74782669--74782895 Score: 289
Period size: 81 Copynumber: 2.8 Consensus size: 81
74782659 GGGCATAATC
* *
74782669 ATCATTTTA-CCATACAGGGGTATTATGGTCATTTTACCCTA-TAGAGGCATTACGAACATTTTA
1 ATCATTTTATCC-TACAGGGGTATTACGGTCATTTTACCCTACAAG-GGCATTACGAACATTTTA
*
74782732 CCCTA-TAGAGGCATTACG
64 CCCTACAAG-GGCATTACG
* * * *
74782750 GTCATTTTATCCTACAGGGGTATTACGGTCATTTTACCCTACAAGGGCATTACGGACAATTTAGC
1 ATCATTTTATCCTACAGGGGTATTACGGTCATTTTACCCTACAAGGGCATTACGAACATTTTACC
74782815 CTACAAGGGCATTACG
66 CTACAAGGGCATTACG
* * * ** *
74782831 ATCATTTTATCCTATAGGAGTATTACGGTCATTTTACCCTACAGGGGTTTTACGATCATTTTACC
1 ATCATTTTATCCTACAGGGGTATTACGGTCATTTTACCCTACAAGGGCATTACGAACATTTTACC
74782896 TATTTTGGGG
Statistics
Matches: 126, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
81 120 0.95
82 6 0.05
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (81 bp):
ATCATTTTATCCTACAGGGGTATTACGGTCATTTTACCCTACAAGGGCATTACGAACATTTTACC
CTACAAGGGCATTACG
Found at i:74784979 original size:50 final size:52
Alignment explanation
Indices: 74784902--74785047 Score: 179
Period size: 50 Copynumber: 2.8 Consensus size: 52
74784892 TTTTAAACTT
*
74784902 ACCATTGCCATGTATTGACATAGTCTTACGTGGTATCATTGCCATATGAA-C
1 ACCATTGCCATGTCTTGACATAGTCTTACGTGGTATCATTGCCATATGAACC
* * *
74784953 A-CATTGTCATGTCTTGACATAGTCTTACGTGGTATCCTTGCCTTATGAACTC
1 ACCATTGCCATGTCTTGACATAGTCTTACGTGGTATCATTGCCATATGAAC-C
* * * * * *
74785005 ACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCC
1 ACCATTGCCATGTCTTGACATAGTCTTACGTGGTATCATTGCC
74785048 TTATAGTAGT
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
50 44 0.54
51 1 0.01
52 2 0.02
53 34 0.42
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (52 bp):
ACCATTGCCATGTCTTGACATAGTCTTACGTGGTATCATTGCCATATGAACC
Found at i:74785087 original size:56 final size:53
Alignment explanation
Indices: 74784897--74785143 Score: 176
Period size: 50 Copynumber: 4.6 Consensus size: 53
74784887 TTCCTTTTTA
* * * * * * * *
74784897 AACTTACCATTGCCATGTATTGACATAGTCTTACGTGGTATCATTGCCATATG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* * * * *
74784950 AA--CA-CATTGTCATGTCTTGACATAGTCTTACGTGGTATCCTTGCCTTATG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* * * *
74785000 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTAT-G
** * * *** * *
74785054 TAGTTTATCAATGCCATTGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTCACCAATGCCA-TGTCTTGACATGGTCTTACATGGGATCCTTGCCTTAT-G
* * *
74785110 AACTTACCAATGCCATGCCTTGGCATGGTCTTAC
1 AACTCACCAATGCCATGTCTTGACATGGTCTTAC
74785144 TTGGTAACCT
Statistics
Matches: 158, Mismatches: 30, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
50 44 0.28
51 1 0.01
52 2 0.01
53 40 0.25
54 18 0.11
55 22 0.14
56 31 0.20
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (53 bp):
AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
Found at i:74788441 original size:40 final size:40
Alignment explanation
Indices: 74788368--74788548 Score: 294
Period size: 40 Copynumber: 4.5 Consensus size: 40
74788358 ACCCAAGTAT
* * *
74788368 CTTCGGGATTTAG-CCGAATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
*
74788407 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
74788447 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
74788487 CTTCAGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
74788527 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
74788549 CATTCGAATA
Statistics
Matches: 133, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 11 0.08
40 121 0.91
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:74796186 original size:27 final size:26
Alignment explanation
Indices: 74796145--74796256 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
74796135 AGGAAGCGTC
*
74796145 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
74796172 CTCGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
74796199 CTGGTGGTTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
74796227 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
74796253 CTGG
1 CTGG
74796257 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.10
27 49 0.68
28 16 0.22
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:74796249 original size:54 final size:54
Alignment explanation
Indices: 74796145--74796256 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
74796135 AGGAAGCGTC
*
74796145 CTGGTGGCTATGCCACAATTATCTGATCTCGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTCGTGACTCTGCCACATATATCTGTT
* * * * *
74796199 CTGGTGGTTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTCGTGACTCTGCCACATATATCTGTT
74796253 CTGG
1 CTGG
74796257 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTCGTGACTCTGCCACATATATCTGTT
Found at i:74803205 original size:40 final size:40
Alignment explanation
Indices: 74803152--74803251 Score: 128
Period size: 40 Copynumber: 2.5 Consensus size: 40
74803142 CTCGGTCTCA
* * ** *
74803152 CACACTAAGTGCCACATATAGCCAAAACTATTTTTAATTG
1 CACACTAAGTGCCATATATAGCCAAAACTATCTGAAATCG
* * *
74803192 CACACTAATTGCCATATATAGCCAGAGCTATCTGAAATCG
1 CACACTAAGTGCCATATATAGCCAAAACTATCTGAAATCG
74803232 CACACTAAGTGCCATATATA
1 CACACTAAGTGCCATATATA
74803252 TATCCAAATC
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (40 bp):
CACACTAAGTGCCATATATAGCCAAAACTATCTGAAATCG
Found at i:74803213 original size:81 final size:80
Alignment explanation
Indices: 74803064--74803251 Score: 193
Period size: 81 Copynumber: 2.3 Consensus size: 80
74803054 ATACTTGAAT
* * * * *
74803064 TCTCGCACACTAAGTGCTAAAACATAGCCGAAGCTATTTTAATGTTGCACACTAAGTGCCTTTCA
1 TCTCGCACACTAAGTGC-CAAATATAGCCAAAACTATTTTAA-GTTGCACACTAAGTGCCTATCA
*
74803129 TAGCC-GAAGCTATCTCGG
64 TAGCCAG-AGCTATCT-GA
* * *
74803147 TCTCACACACTAAGTGCCACATATAGCCAAAACTATTTTTAA-TTGCACACTAATTGCCATAT-A
1 TCTCGCACACTAAGTGCCAAATATAGCCAAAACTA-TTTTAAGTTGCACACTAAGTGCC-TATCA
74803210 TAGCCAGAGCTATCTGA
64 TAGCCAGAGCTATCTGA
** *
74803227 AATCGCACACTAAGTGCCATATATA
1 TCTCGCACACTAAGTGCCAAATATA
74803252 TATCCAAATC
Statistics
Matches: 89, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
80 22 0.25
81 29 0.33
82 16 0.18
83 22 0.25
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (80 bp):
TCTCGCACACTAAGTGCCAAATATAGCCAAAACTATTTTAAGTTGCACACTAAGTGCCTATCATA
GCCAGAGCTATCTGA
Found at i:74806851 original size:40 final size:40
Alignment explanation
Indices: 74806802--74806904 Score: 179
Period size: 40 Copynumber: 2.6 Consensus size: 40
74806792 TATCTCGGTC
*
74806802 TCACACACTAAGTGCCATATATAGCCAAAGCTATTTCAAA
1 TCACACACTAAGTGCCATATATAGCCAAAGCTATCTCAAA
*
74806842 TCACACACTAAGTGCCATATATAGCCAAAGCTATCTCGAA
1 TCACACACTAAGTGCCATATATAGCCAAAGCTATCTCAAA
*
74806882 TCGCACACTAAGTGCCATATATA
1 TCACACACTAAGTGCCATATATA
74806905 TATACGAATC
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.38, C:0.26, G:0.12, T:0.24
Consensus pattern (40 bp):
TCACACACTAAGTGCCATATATAGCCAAAGCTATCTCAAA
Found at i:74806877 original size:81 final size:81
Alignment explanation
Indices: 74806722--74806904 Score: 199
Period size: 81 Copynumber: 2.2 Consensus size: 81
74806712 CAAATTCTGG
* * * * * * * **
74806722 CACACTAGGTGCCAAAACATAGCCAAAGCTATTTTAATCTCACACACTGAGTGCCTTTCATAGTT
1 CACACTAAGTGCC-ATATATAGCCAAAGCTATTTCAATATCACACACTAAGTGCCTATCATAGCC
* * **
74806787 GAAGTTATCTCGGTCTCA
65 AAAGCTATCTC-GAATCA
74806805 CACACTAAGTGCCATATATAGCCAAAGCTATTTCAA-ATCACACACTAAGTGCCATAT-ATAGCC
1 CACACTAAGTGCCATATATAGCCAAAGCTATTTCAATATCACACACTAAGTGCC-TATCATAGCC
*
74806868 AAAGCTATCTCGAATCG
65 AAAGCTATCTCGAATCA
74806885 CACACTAAGTGCCATATATA
1 CACACTAAGTGCCATATATA
74806905 TATACGAATC
Statistics
Matches: 85, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
80 23 0.27
81 28 0.33
82 22 0.26
83 12 0.14
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.26
Consensus pattern (81 bp):
CACACTAAGTGCCATATATAGCCAAAGCTATTTCAATATCACACACTAAGTGCCTATCATAGCCA
AAGCTATCTCGAATCA
Found at i:74815458 original size:14 final size:15
Alignment explanation
Indices: 74815441--74815469 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
74815431 TCACAAAAAT
74815441 TTCACACAT-ATAAA
1 TTCACACATAATAAA
74815455 TTCACACATAATAAA
1 TTCACACATAATAAA
74815470 CACTAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:74815785 original size:17 final size:19
Alignment explanation
Indices: 74815749--74815785 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
74815739 AAAGCCCATA
74815749 ACATGTCCCATGTGGGCCC
1 ACATGTCCCATGTGGGCCC
*
74815768 ACATG-CCCTTGT-GGCCC
1 ACATGTCCCATGTGGGCCC
74815785 A
1 A
74815786 ATAATCCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 6 0.35
19 5 0.29
ACGTcount: A:0.16, C:0.38, G:0.24, T:0.22
Consensus pattern (19 bp):
ACATGTCCCATGTGGGCCC
Found at i:74827071 original size:17 final size:18
Alignment explanation
Indices: 74827044--74827077 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
74827034 AATTAAATAT
74827044 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
74827062 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
74827078 TAAACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:74848688 original size:47 final size:47
Alignment explanation
Indices: 74848622--74849101 Score: 771
Period size: 47 Copynumber: 10.1 Consensus size: 47
74848612 GAAATGATAG
*
74848622 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
74848669 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
74848716 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
74848765 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
74848812 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
74848859 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
74848908 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
74848957 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
74849004 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
74849051 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
74849098 TAAG
1 TAAG
74849102 TCCCGAAGGG
Statistics
Matches: 412, Mismatches: 17, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
47 273 0.66
49 139 0.34
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:74848797 original size:96 final size:94
Alignment explanation
Indices: 74848622--74849101 Score: 780
Period size: 96 Copynumber: 5.0 Consensus size: 94
74848612 GAAATGATAG
* *
74848622 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGAT
*
74848687 GTGATGAATGTGAAAGTGTATATACGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
74848716 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAGGGCCTAATGGCCG
*
74848781 ATGTGATGAATGTGAAAGTGTATATACGTGA
64 ATGTGATGAATGTGAAAGTGTATATATGTGA
* *
74848812 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGAT
74848877 GTGATGAATGTGAAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTG--TATATATGTGA
*
74848908 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAGGGCCTAATGGCCG
74848973 ATGTGATGAATGTGAAAGTGTATATATGTGA
64 ATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * *
74849004 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAAC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGAT
* *
74849069 GTGATGGATGTGAAAGTGTATAAATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
74849098 TAAG
1 TAAG
74849102 TCCCGAAGGG
Statistics
Matches: 364, Mismatches: 16, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
94 136 0.37
96 183 0.50
98 45 0.12
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (94 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGA
Found at i:74848883 original size:143 final size:143
Alignment explanation
Indices: 74848625--74849101 Score: 823
Period size: 143 Copynumber: 3.3 Consensus size: 143
74848615 ATGATAGTAA
74848625 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTG
74848690 ATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
66 ATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
74848755 ATATATGTGATAG
131 ATATATGTGATAG
74848768 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTG
74848833 ATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
66 ATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
74848898 ATATATGTGATAG
131 ATATATGTGATAG
* *
74848911 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGATAAGGCCTAATGGCCGATG
*
74848976 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-
64 TGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
74849040 -TATATATGTGACAG
129 ATATATATGTGATAG
* * * * * * *
74849054 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAG
74849102 TCCCGAAGGG
Statistics
Matches: 321, Mismatches: 11, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
141 13 0.04
143 217 0.68
145 91 0.28
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (143 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATATATGTGATAG
Found at i:74849276 original size:37 final size:37
Alignment explanation
Indices: 74849220--74849298 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
74849210 CCGAGCTCTA
* * *
74849220 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
74849257 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
74849294 AAGAC
1 AAGAC
74849299 TTCATAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:74852597 original size:37 final size:37
Alignment explanation
Indices: 74852533--74852634 Score: 159
Period size: 37 Copynumber: 2.8 Consensus size: 37
74852523 AGCTCAGACG
* * * *
74852533 AAATCTCCACATGAAGTTATCGAGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
74852570 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
74852607 TAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
74852635 TAGAGCTCGG
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:74852831 original size:47 final size:47
Alignment explanation
Indices: 74852753--74853118 Score: 590
Period size: 47 Copynumber: 7.7 Consensus size: 47
74852743 CCCTTCGGGA
* * * * * *
74852753 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
74852800 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74852847 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74852894 CTTATCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74852941 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74852988 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74853037 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
74853084 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
74853119 AGAATCCTAA
Statistics
Matches: 301, Mismatches: 15, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 253 0.84
49 47 0.16
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74853066 original size:143 final size:141
Alignment explanation
Indices: 74852753--74853118 Score: 599
Period size: 143 Copynumber: 2.6 Consensus size: 141
74852743 CCCTTCGGGA
* * * * * * *
74852753 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATACAC
74852818 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
74852883 GGCCATTAGGC
131 GGCCATTAGGC
74852894 CTTATCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATACAC
74852959 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
74853024 TCGGCCATTAGGC
129 TCGGCCATTAGGC
* * *
74853037 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGCA-
1 CTTATCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATACAC
*
74853101 TGTTCACATCCATCACAT
66 T-TTCACATTCATCACAT
74853119 AGAATCCTAA
Statistics
Matches: 211, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
141 95 0.45
142 1 0.00
143 115 0.55
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:74853074 original size:190 final size:188
Alignment explanation
Indices: 74852753--74853116 Score: 595
Period size: 190 Copynumber: 1.9 Consensus size: 188
74852743 CCCTTCGGGA
* * * * *
74852753 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
74852818 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
74852883 GGCCATTAGGCCTTATCACATATATACACT-TTCACATTCATCACGTCGGCCATTAGGC
131 GGCCATTAGGCCTTATCACATATATACA-TGTTCACATCCATCACGTCGGCCATTAGGC
* * *
74852941 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCAC--ATATATAC
74853006 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
* *
74853071 TCGGCCATTAGGCCTTATCTCATATATGCATGTTCACATCCATCAC
129 TCGGCCATTAGGCCTTATCACATATATACATGTTCACATCCATCAC
74853117 ATAGAATCCT
Statistics
Matches: 162, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
188 47 0.29
189 1 0.01
190 114 0.70
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (188 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACATGTTCACATCCATCACGTCGGCCATTAGGC
Found at i:74862666 original size:12 final size:13
Alignment explanation
Indices: 74862642--74862670 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
74862632 GGGCTATAAC
74862642 TATTGCATTTATT
1 TATTGCATTTATT
74862655 TATTGC-TTTATT
1 TATTGCATTTATT
74862667 TATT
1 TATT
74862671 CATCTATAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (13 bp):
TATTGCATTTATT
Found at i:74874070 original size:28 final size:27
Alignment explanation
Indices: 74874007--74874158 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
74873997 ATATTAAGTC
* * *
74874007 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
74874034 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
74874062 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
74874089 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
74874117 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
74874144 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74874159 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:74874091 original size:55 final size:55
Alignment explanation
Indices: 74874007--74874158 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
74873997 ATATTAAGTC
* * *
74874007 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
74874062 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
74874117 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
74874159 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:74882114 original size:28 final size:27
Alignment explanation
Indices: 74882051--74882202 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
74882041 ATATTAAGTC
* * *
74882051 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
74882078 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
74882106 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
74882133 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
74882161 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
74882188 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74882203 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:74882135 original size:55 final size:55
Alignment explanation
Indices: 74882051--74882202 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
74882041 ATATTAAGTC
* * *
74882051 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
74882106 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
74882161 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
74882203 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:74887372 original size:46 final size:45
Alignment explanation
Indices: 74887200--74887372 Score: 165
Period size: 46 Copynumber: 3.8 Consensus size: 45
74887190 AACCCGCCCC
* * * * * *
74887200 TAAGTGAGCTCAGAATCAACTCAACGAGCTCGGGCGTTCGCATCTA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATC-A
74887246 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACGC-T--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TT-CGCATCA
* * *
74887294 TCA-CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT-CA
74887339 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
74887373 TGCTGAACCA
Statistics
Matches: 104, Mismatches: 12, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
41 3 0.03
42 3 0.03
43 1 0.01
44 1 0.01
45 2 0.02
46 57 0.55
47 28 0.27
48 2 0.02
49 1 0.01
51 3 0.03
52 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.23
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCA
Found at i:74892862 original size:27 final size:28
Alignment explanation
Indices: 74892778--74892875 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
74892768 CATGAGATTG
* * * *
74892778 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
74892807 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
74892835 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
74892862 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
74892876 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:74892886 original size:27 final size:27
Alignment explanation
Indices: 74892806--74892888 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
74892796 TAAATTGTAC
* *
74892806 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
74892834 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
74892861 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
74892888 A
1 A
74892889 TTTTGAATCA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:74892889 original size:29 final size:27
Alignment explanation
Indices: 74892778--74892889 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
74892768 CATGAGATTG
** * *
74892778 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
74892807 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
74892835 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
74892862 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
74892890 TTTGAATCAC
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:74901065 original size:27 final size:28
Alignment explanation
Indices: 74900981--74901078 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
74900971 CATGAGATTG
* * *
74900981 GCACTAAGTGTGCGGGTTTAAATTGT-TCA
1 GCACTAAGTGTGCGAGTTT-GATTATAT-A
74901010 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
74901038 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
74901065 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
74901079 GACTTAATAT
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 24 0.38
28 21 0.33
29 19 0.30
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:74901092 original size:29 final size:27
Alignment explanation
Indices: 74901009--74901092 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
74900999 TAAATTGTTC
* *
74901009 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* *
74901037 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTAATTATAT
*
74901064 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTGC-GACTTAAT-TATAT
74901093 TTTGAATCAT
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 23 0.46
28 22 0.44
29 5 0.10
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTAATTATAT
Found at i:74909269 original size:27 final size:28
Alignment explanation
Indices: 74909185--74909282 Score: 119
Period size: 27 Copynumber: 3.5 Consensus size: 28
74909175 CATGAGATTG
* * *
74909185 GCACTAAGTGTGCGGGTTTAAATTGT-TCA
1 GCACTAAGTGTGCGAGTTT-GATTATAT-A
74909214 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
74909242 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
74909269 GCAGTGAGTGTGCG
1 GCACTAAGTGTGCG
74909283 GACTTAATAT
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
27 23 0.37
28 21 0.33
29 19 0.30
ACGTcount: A:0.26, C:0.12, G:0.30, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:74909296 original size:29 final size:27
Alignment explanation
Indices: 74909213--74909296 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 27
74909203 TAAATTGTTC
* *
74909213 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* *
74909241 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTAATTATAT
* *
74909268 AGCAGTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTGC-GACTTAAT-TATAT
74909297 TTTTGAATCA
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
27 22 0.45
28 22 0.45
29 5 0.10
ACGTcount: A:0.30, C:0.11, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTAATTATAT
Found at i:74913519 original size:28 final size:27
Alignment explanation
Indices: 74913464--74913575 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
74913454 AGCATGGCTG
* *
74913464 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
74913490 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
*
74913518 CCAGAACA-AAAATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * *
74913545 CAAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
74913572 CCAG
1 CCAG
74913576 GACACTTCCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 9 0.12
27 44 0.61
28 19 0.26
ACGTcount: A:0.39, C:0.22, G:0.23, T:0.15
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:74921345 original size:27 final size:26
Alignment explanation
Indices: 74921308--74921419 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
74921298 AGCATGGCTG
* *
74921308 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
74921334 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
74921362 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
74921389 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
74921416 CCAG
1 CCAG
74921420 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:74921400 original size:54 final size:54
Alignment explanation
Indices: 74921308--74921419 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
74921298 AGCATGGCTG
* *
74921308 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
74921362 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
74921416 CCAG
1 CCAG
74921420 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:74923559 original size:13 final size:13
Alignment explanation
Indices: 74923543--74923575 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
74923533 TTTAATTAAA
*
74923543 TTAGTTAATTAGT
1 TTAGATAATTAGT
74923556 TTAGATAATTAGT
1 TTAGATAATTAGT
74923569 TTA-ATAA
1 TTAGATAA
74923576 ACAATTCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:74928225 original size:42 final size:42
Alignment explanation
Indices: 74928177--74928259 Score: 166
Period size: 42 Copynumber: 2.0 Consensus size: 42
74928167 ATTTGTCATA
74928177 ATTAAGAGGAGTTGATTGCGCGCCTAGAAATAGGGTGACAAC
1 ATTAAGAGGAGTTGATTGCGCGCCTAGAAATAGGGTGACAAC
74928219 ATTAAGAGGAGTTGATTGCGCGCCTAGAAATAGGGTGACAA
1 ATTAAGAGGAGTTGATTGCGCGCCTAGAAATAGGGTGACAA
74928260 GATTTTGCCG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.34, C:0.13, G:0.31, T:0.22
Consensus pattern (42 bp):
ATTAAGAGGAGTTGATTGCGCGCCTAGAAATAGGGTGACAAC
Found at i:74932755 original size:89 final size:89
Alignment explanation
Indices: 74932652--74932830 Score: 331
Period size: 89 Copynumber: 2.0 Consensus size: 89
74932642 TCGATGCCAT
74932652 ATCCCAGATATGGTCTTACACAAAGTCTCATATAGATGTCATATCCCAGATATGTTCTTACACAT
1 ATCCCAGATATGGTCTTACACAAAGTCTCATATAGATGTCATATCCCAGATATGTTCTTACACAT
*
74932717 AGTCTTAGTGACCCTAATGTCATG
66 AGTCTTAGTAACCCTAATGTCATG
* *
74932741 ATCCCAGATATGGTCTTACACAAAGTCTCATATAGATGTCATATCCCAGATATTTTTTTACACAT
1 ATCCCAGATATGGTCTTACACAAAGTCTCATATAGATGTCATATCCCAGATATGTTCTTACACAT
74932806 AGTCTTAGTAACCCTAATGTCATG
66 AGTCTTAGTAACCCTAATGTCATG
74932830 A
1 A
74932831 CATTTGTATC
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
89 87 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.34
Consensus pattern (89 bp):
ATCCCAGATATGGTCTTACACAAAGTCTCATATAGATGTCATATCCCAGATATGTTCTTACACAT
AGTCTTAGTAACCCTAATGTCATG
Found at i:74932810 original size:42 final size:42
Alignment explanation
Indices: 74932564--74932793 Score: 232
Period size: 42 Copynumber: 5.3 Consensus size: 42
74932554 ATACCAATGC
* ** * * *
74932564 CATATCCCAGATATGGTATTACA-TGAGATCTCGTATCGATGC
1 CATATCCCAGATATGGTCTTACACAAAG-TCTCATATAGATGT
* * * * *
74932606 CAATAGCCCA-ACTATGGTCTTACACGAAGTCTCTTATCGATGC
1 C-ATATCCCAGA-TATGGTCTTACACAAAGTCTCATATAGATGT
74932649 CATATCCCAGATATGGTCTTACACAAAGTCTCATATAGATGT
1 CATATCCCAGATATGGTCTTACACAAAGTCTCATATAGATGT
* * *
74932691 CATATCCCAGATATGTTCTTACACATAGTCTTAGTGACCCTA-ATGT
1 CATATCCCAGATATGGTCTTACACAAAGTCTCA-T-A---TAGATGT
74932737 CATGATCCCAGATATGGTCTTACACAAAGTCTCATATAGATGT
1 CAT-ATCCCAGATATGGTCTTACACAAAGTCTCATATAGATGT
74932780 CATATCCCAGATAT
1 CATATCCCAGATAT
74932794 TTTTTTACAC
Statistics
Matches: 161, Mismatches: 16, Indels: 22
0.81 0.08 0.11
Matches are distributed among these distances:
42 79 0.49
43 41 0.25
44 3 0.02
45 1 0.01
46 8 0.05
47 29 0.18
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.31
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACAAAGTCTCATATAGATGT
Found at i:74934553 original size:6 final size:6
Alignment explanation
Indices: 74934523--74934597 Score: 82
Period size: 6 Copynumber: 12.3 Consensus size: 6
74934513 AAGAAACATT
* * *
74934523 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCA-A GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
74934572 ATCAGA ATCAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCAGA AT
74934598 AAAGCTTATA
Statistics
Matches: 58, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
5 3 0.05
6 50 0.86
7 3 0.05
8 2 0.03
ACGTcount: A:0.51, C:0.15, G:0.17, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:74934855 original size:28 final size:27
Alignment explanation
Indices: 74934763--74934871 Score: 130
Period size: 27 Copynumber: 4.0 Consensus size: 27
74934753 GGCTGCCAGG
* * * *
74934763 ACAGATATTGTGACAGAGTCACCAGAT
1 ACAGATATTGTGGCATAGCCACCAGAA
* *
74934790 ACAAATATTGTGGCAAAGCCACCAG-A
1 ACAGATATTGTGGCATAGCCACCAGAA
*
74934816 ACAGATATTTGTGGCATAGCCACTAGAA
1 ACAGATA-TTGTGGCATAGCCACCAGAA
74934844 ACAGATATTTGTGGCATAGCCACCAGAA
1 ACAGATA-TTGTGGCATAGCCACCAGAA
74934872 CGCTTCCTCC
Statistics
Matches: 71, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
26 6 0.08
27 37 0.52
28 28 0.39
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.21
Consensus pattern (27 bp):
ACAGATATTGTGGCATAGCCACCAGAA
Found at i:74935098 original size:27 final size:27
Alignment explanation
Indices: 74935068--74935182 Score: 133
Period size: 27 Copynumber: 4.3 Consensus size: 27
74935058 GGCAAAATGG
* *
74935068 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTTTACCCTACAAGGGTATTTCGA
* * *
74935095 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTTTACCCTACAAGGGTATTTCGA
*
74935122 T-ATTTCTACCCTACAAGGGTATTTCGG
1 TAATTT-TACCCTACAAGGGTATTTCGA
* * *
74935149 TAATTCTACCCTACATGGGTATTTCAA
1 TAATTTTACCCTACAAGGGTATTTCGA
74935176 TAATTTT
1 TAATTTT
74935183 GTAAATCAAG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
26 3 0.04
27 68 0.92
28 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.37
Consensus pattern (27 bp):
TAATTTTACCCTACAAGGGTATTTCGA
Found at i:74935113 original size:54 final size:54
Alignment explanation
Indices: 74935055--74935163 Score: 132
Period size: 54 Copynumber: 2.0 Consensus size: 54
74935045 TTAATACCCT
74935055 AGGGGCAAAAT-GGTAATTT-TACCCCACAAGGGTATCTCGATAATTCTACCCTAC
1 AGGGG-AAAATCGGT-ATTTCTACCCCACAAGGGTATCTCGATAATTCTACCCTAC
* ** * * *
74935109 AGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTAC
1 AGGGGAAAATCGGTATTTCTACCCCACAAGGGTATCTCGATAATTCTACCCTAC
74935163 A
1 A
74935164 TGGGTATTTC
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 6 0.13
54 41 0.87
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (54 bp):
AGGGGAAAATCGGTATTTCTACCCCACAAGGGTATCTCGATAATTCTACCCTAC
Found at i:74935169 original size:54 final size:53
Alignment explanation
Indices: 74935070--74935173 Score: 163
Period size: 54 Copynumber: 1.9 Consensus size: 53
74935060 CAAAATGGTA
74935070 ATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCGGT
1 ATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCGGT
* * * *
74935123 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACATGGGTATTTC
1 ATTT-TACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTC
74935174 AATAATTTTG
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
53 4 0.09
54 42 0.91
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (53 bp):
ATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCGGT
Found at i:74936389 original size:24 final size:22
Alignment explanation
Indices: 74936348--74936391 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
74936338 CATTATTCAA
*
74936348 ATTTCATATACATGTATCATAC
1 ATTTCATATACATATATCATAC
74936370 ATTTCATATATCAATATATCAT
1 ATTTCATATA-C-ATATATCAT
74936392 GTAACATCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 1 0.05
24 8 0.42
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.43
Consensus pattern (22 bp):
ATTTCATATACATATATCATAC
Found at i:74936603 original size:24 final size:25
Alignment explanation
Indices: 74936557--74936621 Score: 80
Period size: 24 Copynumber: 2.7 Consensus size: 25
74936547 TTCTGTACAT
*
74936557 GTAT-CTCATACGAGCTATAAATCG
1 GTATGCTCTTACGAGCTATAAATCG
74936581 GTATGCTCTTACGAGCTAT-AATCG
1 GTATGCTCTTACGAGCTATAAATCG
* * *
74936605 ATAAGCTCTTTCGAGCT
1 GTATGCTCTTACGAGCT
74936622 GAGTAATAGT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
24 23 0.64
25 13 0.36
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (25 bp):
GTATGCTCTTACGAGCTATAAATCG
Found at i:74936658 original size:25 final size:26
Alignment explanation
Indices: 74936563--74936687 Score: 77
Period size: 25 Copynumber: 5.0 Consensus size: 26
74936553 ACATGTATCT
* *
74936563 CATACGAGCT-ATAAATCGGTATGCT-
1 CATACGAGCTGA-GAATCGGTAAGCTC
* * *
74936588 CTTACGAGCT-ATAATCGATAAGCT-
1 CATACGAGCTGAGAATCGGTAAGCTC
* * *
74936612 CTTTCGAGCTGAGTAAT-AGTAAGCTC
1 CATACGAGCTGAG-AATCGGTAAGCTC
*
74936638 C-TGCGAGCTGA-ATATCGGTAAGC-C
1 CATACGAGCTGAGA-ATCGGTAAGCTC
*
74936662 CATATGAGCTGAGAATCGGTAAGCTC
1 CATACGAGCTGAGAATCGGTAAGCTC
74936688 TCATGAGATG
Statistics
Matches: 80, Mismatches: 12, Indels: 15
0.75 0.11 0.14
Matches are distributed among these distances:
23 1 0.01
24 23 0.29
25 50 0.62
26 6 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CATACGAGCTGAGAATCGGTAAGCTC
Found at i:74936693 original size:25 final size:24
Alignment explanation
Indices: 74936642--74936707 Score: 71
Period size: 25 Copynumber: 2.7 Consensus size: 24
74936632 AAGCTCCTGC
74936642 GAGCTGAATATCGGTAAGCCCATAT
1 GAGCTGAA-ATCGGTAAGCCCATAT
*
74936667 GAGCTGAGAATCGGTAAGCTC-TCAT
1 GAGCTGA-AATCGGTAAGCCCAT-AT
* *
74936692 GAGATGAAATCCGTAA
1 GAGCTGAAATCGGTAA
74936708 CCCTAATGAC
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
24 9 0.25
25 26 0.72
26 1 0.03
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (24 bp):
GAGCTGAAATCGGTAAGCCCATAT
Found at i:74942682 original size:37 final size:37
Alignment explanation
Indices: 74942629--74942731 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
74942619 CGAATAGTCC
*
74942629 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
74942666 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
74942703 CCACACGTAGTGATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
74942732 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:74942983 original size:95 final size:96
Alignment explanation
Indices: 74942872--74943064 Score: 280
Period size: 95 Copynumber: 2.0 Consensus size: 96
74942862 ATATACACAC
* *
74942872 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACATATATCA-ACATGTTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAAATATACATATATCATACATATTTCA
*
74942936 CATTAGCCATTCGGATTTACCACATATATAT
66 CATTAGCCATTCGGATTTACCACACATATAT
** * * * *
74942967 ATCTCATACATATTTCATGTTAGTCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAAATATACATATATCATACATATTTCA
* *
74943032 CATTAGCCATTTGGCTTTACCACACATATAT
66 CATTAGCCATTCGGATTTACCACACATATAT
74943063 AT
1 AT
74943065 ATTTATCTTG
Statistics
Matches: 86, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
95 48 0.56
96 38 0.44
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.38
Consensus pattern (96 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAAATATACATATATCATACATATTTCA
CATTAGCCATTCGGATTTACCACACATATAT
Found at i:74942997 original size:48 final size:48
Alignment explanation
Indices: 74942872--74943064 Score: 262
Period size: 48 Copynumber: 4.0 Consensus size: 48
74942862 ATATACACAC
* *
74942872 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * * *
74942920 ATATCA-ACATGTTTCACATTAGCCATTCGGATTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
** *
74942967 ATCTCATACATATTTCATGTTAGTCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * * *
74943015 ATCTCATATATATTTCACATTAGCCATTTGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
74943063 AT
1 AT
74943065 ATTTATCTTG
Statistics
Matches: 124, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
47 42 0.34
48 82 0.66
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.38
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:74950433 original size:22 final size:22
Alignment explanation
Indices: 74950407--74950450 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
74950397 CATATTTAGG
74950407 ATAAATTTTGATTGATTTATGA
1 ATAAATTTTGATTGATTTATGA
74950429 ATAAATTTTGATTGATTTATGA
1 ATAAATTTTGATTGATTTATGA
74950451 TTTTGATTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (22 bp):
ATAAATTTTGATTGATTTATGA
Found at i:74951986 original size:13 final size:13
Alignment explanation
Indices: 74951968--74951994 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
74951958 GAAGTAATCG
74951968 CACACGGGCGTGT
1 CACACGGGCGTGT
74951981 CACACGGGCGTGT
1 CACACGGGCGTGT
74951994 C
1 C
74951995 CCTACCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:74954010 original size:29 final size:29
Alignment explanation
Indices: 74953920--74954037 Score: 134
Period size: 29 Copynumber: 4.2 Consensus size: 29
74953910 TACATACATG
*
74953920 CATATGGCCCACTAGGCCCAA-TCTTATT
1 CATATGGCCCACTAGGCCCAATTCATATT
* * *
74953948 CAAATGGCCTACTA-GCCCAGTTCATATT
1 CATATGGCCCACTAGGCCCAATTCATATT
* * *
74953976 CTTATGGCCCACTAGGCCTAATTCAAATT
1 CATATGGCCCACTAGGCCCAATTCATATT
* *
74954005 CATATGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCACTAGGCCCAATTCATATT
74954034 -ATAT
1 CATAT
74954038 TCATGCTCAC
Statistics
Matches: 73, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
27 5 0.07
28 33 0.45
29 35 0.48
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.30
Consensus pattern (29 bp):
CATATGGCCCACTAGGCCCAATTCATATT
Found at i:74954270 original size:8 final size:8
Alignment explanation
Indices: 74954257--74954291 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
74954247 ACTTTTGGCT
74954257 TTTCGGCA
1 TTTCGGCA
74954265 TTTCGGCA
1 TTTCGGCA
*
74954273 TTTCGGCT
1 TTTCGGCA
*
74954281 TTTAGGCA
1 TTTCGGCA
74954289 TTT
1 TTT
74954292 TGGCTTTTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.11, C:0.20, G:0.23, T:0.46
Consensus pattern (8 bp):
TTTCGGCA
Found at i:74954296 original size:16 final size:16
Alignment explanation
Indices: 74954248--74954300 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
74954238 CGTAGCCCAA
74954248 CTTTT-GGC-TTTTCGG
1 CTTTTAGGCATTTT-GG
* * *
74954263 CATTTCGGCATTTCGG
1 CTTTTAGGCATTTTGG
74954279 CTTTTAGGCATTTTGG
1 CTTTTAGGCATTTTGG
74954295 CTTTTA
1 CTTTTA
74954301 CTGATTCATT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 4 0.13
16 24 0.77
17 3 0.10
ACGTcount: A:0.09, C:0.19, G:0.23, T:0.49
Consensus pattern (16 bp):
CTTTTAGGCATTTTGG
Found at i:74955935 original size:27 final size:27
Alignment explanation
Indices: 74955905--74956153 Score: 279
Period size: 27 Copynumber: 9.3 Consensus size: 27
74955895 TAGTTTACCA
**
74955905 AATTACCAAAATACCCCTGGT-TTGTAG
1 AATTACCAAAATACCCCT-GTAGGGTAG
** * *
74955932 AATTACTGAAATACCCCTGTAAGGCAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
74955959 AACTACCAAAATA-CCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
74955985 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
74956012 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
74956039 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
**
74956066 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * *
74956093 AATTACTAAAATACCCCTATAGGGTGG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * * * *
74956120 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCAAAATACCCCTGTAGGGTAG
74956146 AATTACCA
1 AATTACCA
74956154 TTTTGCCCCT
Statistics
Matches: 187, Mismatches: 33, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
26 39 0.21
27 148 0.79
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGTAGGGTAG
Found at i:74956023 original size:80 final size:81
Alignment explanation
Indices: 74955905--74956110 Score: 292
Period size: 80 Copynumber: 2.6 Consensus size: 81
74955895 TAGTTTACCA
* **
74955905 AATTACCAAAATACCCCTGGT-TTGTAGAATTACTGAAATACCCCTGTAAGGCAGAACTACCAAA
1 AATTACCGAAATACCCCT-GTAGGGTAGAATTACTGAAATACCCCTGTAAGGCAGAACTACCAAA
*
74955969 ATA-CCCTGTAGGGTAG
65 ATACCCCTATAGGGTAG
* * *
74955985 AATTACCGAAATACCCCTGTAGGGTAGAATTA-TCGAAATACCCCTGTAGGGTAGAATTACCAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACT-GAAATACCCCTGTAAGGCAGAACTACCAAA
74956049 ATACCCCTATAGGGTAG
65 ATACCCCTATAGGGTAG
* *
74956066 AATTACCGGAATACCCCTGTAGGGTAGAATTACTAAAATACCCCT
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCT
74956111 ATAGGGTGGA
Statistics
Matches: 113, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
79 3 0.03
80 56 0.50
81 53 0.47
82 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (81 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGCAGAACTACCAAAA
TACCCCTATAGGGTAG
Found at i:74956630 original size:22 final size:22
Alignment explanation
Indices: 74956578--74956642 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
74956568 TTAAAGCCTT
* *
74956578 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTATGTGCCAAC
* *
74956600 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTATGTGCCAAC
74956622 CTGATTATGGCTATGTGCCAA
1 CTGATTATGGCTATGTGCCAA
74956643 ATGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTATGTGCCAAC
Found at i:74956831 original size:27 final size:27
Alignment explanation
Indices: 74956801--74956902 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
74956791 ATTCTGTTAA
* *
74956801 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
74956828 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
74956855 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
74956882 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
74956903 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 8 0.12
27 52 0.78
28 7 0.10
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:74957072 original size:31 final size:31
Alignment explanation
Indices: 74957034--74957112 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
74957024 TTGTATTCAA
74957034 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
**
74957065 ATTCTGATTTTGATTCTGTTACCTGATTTTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
74957096 ATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
74957113 AGTTCTAATA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.52
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:74957073 original size:6 final size:6
Alignment explanation
Indices: 74957034--74957112 Score: 72
Period size: 6 Copynumber: 12.8 Consensus size: 6
74957024 TTGTATTCAA
* * *
74957034 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
74957083 -TTACCTG ATTTTG ATTCTG ATTCTG ATTCT
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCT
74957113 AGTTCTAATA
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
5 4 0.07
6 46 0.78
7 6 0.10
8 3 0.05
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.52
Consensus pattern (6 bp):
ATTCTG
Found at i:74957103 original size:25 final size:24
Alignment explanation
Indices: 74957037--74957109 Score: 85
Period size: 25 Copynumber: 3.0 Consensus size: 24
74957027 TATTCAAATT
74957037 CTGATTTTGATTCTG-TTACCTGATA
1 CTGATTTTGATTCTGATT--CTGATA
* * *
74957062 CTGATTCTGATTTTGATTCTGTTA
1 CTGATTTTGATTCTGATTCTGATA
74957086 CCTGATTTTGATTCTGATTCTGAT
1 -CTGATTTTGATTCTGATTCTGAT
74957110 TCTAGTTCTA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
24 5 0.12
25 33 0.82
26 2 0.05
ACGTcount: A:0.18, C:0.15, G:0.16, T:0.51
Consensus pattern (24 bp):
CTGATTTTGATTCTGATTCTGATA
Done.