Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 23 of 290
Found at i:7570462 original size:25 final size:25
Alignment explanation
Indices: 7570432--7570482 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
7570422 TCAACAATTC
7570432 AATTGTGCCTCACAAACAATGTGTT
1 AATTGTGCCTCACAAACAATGTGTT
*
7570457 AATTGTGCTTCACAAACAATGTGTT
1 AATTGTGCCTCACAAACAATGTGTT
7570482 A
1 A
7570483 CAGGAGGTGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (25 bp):
AATTGTGCCTCACAAACAATGTGTT
Found at i:7576746 original size:71 final size:71
Alignment explanation
Indices: 7576630--7576772 Score: 250
Period size: 71 Copynumber: 2.0 Consensus size: 71
7576620 CACTTCCACT
*
7576630 CAAGTCTGAGTAACATTGTTTTCCACAAAATAGGCTAGCCTTGCTTGAATTACTACAGTAACAGC
1 CAAGTCTGAGTAACATTGTTTTCCACAAAATAGGCTAGACTTGCTTGAATTACTACAGTAACAGC
7576695 TAAAGG
66 TAAAGG
* * *
7576701 CAAGTTTGAGTAACATTGTTTTCGACAAAATAGGCTAGACTTGCTTGAATTGCTACAGTAACAGC
1 CAAGTCTGAGTAACATTGTTTTCCACAAAATAGGCTAGACTTGCTTGAATTACTACAGTAACAGC
7576766 TAAAGG
66 TAAAGG
7576772 C
1 C
7576773 TAAAGCTGAC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 68 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.29
Consensus pattern (71 bp):
CAAGTCTGAGTAACATTGTTTTCCACAAAATAGGCTAGACTTGCTTGAATTACTACAGTAACAGC
TAAAGG
Found at i:7579073 original size:20 final size:20
Alignment explanation
Indices: 7579048--7579086 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
7579038 ATAGGGCACA
7579048 TTTCCCTGAATTGCCAAACG
1 TTTCCCTGAATTGCCAAACG
7579068 TTTCCCTGAATTGCCAAAC
1 TTTCCCTGAATTGCCAAAC
7579087 ATCGAATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.31
Consensus pattern (20 bp):
TTTCCCTGAATTGCCAAACG
Found at i:7579309 original size:131 final size:132
Alignment explanation
Indices: 7579075--7579516 Score: 525
Period size: 132 Copynumber: 3.4 Consensus size: 132
7579065 ACGTTTCCCT
* * ** * * *
7579075 GAATTGCCAAACATCGAATATTTCCTTTGTTTTGAAGAGTTTTTAGAAA-ACATGAGTGAAATTC
1 GAATTGCCAAATATCGAACATCACCTTCGTTTTAAAGAATTTTTA-AAAGACATGAGTGAAATTC
* * * * *
7579139 AAAAGGGACCTTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATAGGGCACGATTC
65 TAAAGGGATCTTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTC
*
7579204 CGT
130 CGC
* * * *
7579207 GAATTACCCAATATCGAACATCACCTTTG-TTTAAAGAATTTTTAAAAGACATG-GATGAAACTC
1 GAATTGCCAAATATCGAACATCACCTTCGTTTTAAAGAATTTTTAAAAGACATGAG-TGAAATTC
* *
7579270 TAAAGGGATCTTCAATTACTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTC
65 TAAAGGGATCTTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTC
7579335 CGC
130 CGC
* * * * * * *
7579338 GAATTGTCAAATATCGAACATCGCCCTCGTTTTAAAGGATTTTTAGAAGACATAAGTGAAATTTT
1 GAATTGCCAAATATCGAACATCACCTTCGTTTTAAAGAATTTTTAAAAGACATGAGTGAAATTCT
* * * *
7579403 GAAGGGATATTCGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGTACGATTCC
66 AAAGGGATCTTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCC
7579468 GC
131 GC
* *
7579470 AAATTGCCAAATATC-AA-ATCTCGTCTTCGTTTTAAAGAATTTTTAAA
1 GAATTGCCAAATATCGAACATCAC--CTTCGTTTTAAAGAATTTTTAAA
7579517 TGAATAGTTA
Statistics
Matches: 264, Mismatches: 40, Indels: 12
0.84 0.13 0.04
Matches are distributed among these distances:
130 8 0.03
131 110 0.42
132 145 0.55
133 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (132 bp):
GAATTGCCAAATATCGAACATCACCTTCGTTTTAAAGAATTTTTAAAAGACATGAGTGAAATTCT
AAAGGGATCTTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCC
GC
Found at i:7579876 original size:16 final size:16
Alignment explanation
Indices: 7579855--7579886 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7579845 AACAAGATAC
7579855 AAAAATAATGGACTAA
1 AAAAATAATGGACTAA
*
7579871 AAAAATGATGGACTAA
1 AAAAATAATGGACTAA
7579887 TAATCAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.06, G:0.16, T:0.19
Consensus pattern (16 bp):
AAAAATAATGGACTAA
Found at i:7580716 original size:18 final size:18
Alignment explanation
Indices: 7580675--7580721 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
7580665 TACGAAGTAC
*
7580675 ATATGTACATATATATAT
1 ATATGTATATATATATAT
7580693 ATATGTATATATATATAT
1 ATATGTATATATATATAT
7580711 -TAATGTATATA
1 AT-ATGTATATA
7580722 AAAAACTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 1 0.04
18 26 0.96
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (18 bp):
ATATGTATATATATATAT
Found at i:7580721 original size:14 final size:14
Alignment explanation
Indices: 7580684--7580710 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7580674 CATATGTACA
7580684 TATATATATATATG
1 TATATATATATATG
7580698 TATATATATATAT
1 TATATATATATAT
7580711 TAATGTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (14 bp):
TATATATATATATG
Found at i:7582634 original size:17 final size:16
Alignment explanation
Indices: 7582607--7582651 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
7582597 GAATTTAACC
*
7582607 TTTATATTTTTATTTTT
1 TTTA-ATTTTTATATTT
7582624 TCTTAATTTTTATATTT
1 T-TTAATTTTTATATTT
*
7582641 TTTAAATTTTA
1 TTTAATTTTTA
7582652 GTCTGCACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 9 0.36
17 13 0.52
18 3 0.12
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTAATTTTTATATTT
Found at i:7590818 original size:69 final size:68
Alignment explanation
Indices: 7590737--7590939 Score: 244
Period size: 71 Copynumber: 2.9 Consensus size: 68
7590727 ACTTAAATCG
* *
7590737 ACAATTCCAATCAGAATCAATAATTACAAGCACGAAATTGAATAACTCTACAACTAATTAACTTA
1 ACAATTCCAATCAGAATCAATAATTACAAGCACTAAATT-AATAATTCTACAACTAATTAACTTA
7590802 ACTA
65 ACTA
* * * * * * *
7590806 GCAATTACAATCAGAACCAATAATTACAAGCACTAAAATAAATAATTCTACAACCAGTTAACAAC
1 ACAATTCCAATCAGAATCAATAATTACAAGCACT-AAATTAATAATTCTACAACTAATTAAC--T
7590871 TAACTA
63 TAACTA
* * * *
7590877 ACAATTCCAATAAGAATCCATAATTACAAGCACTAAATTATATAATTCTACTATTAATTAACT
1 ACAATTCCAATCAGAATCAATAATTACAAGCACTAAATTA-ATAATTCTACAACTAATTAACT
7590940 ACCCAACTAA
Statistics
Matches: 110, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
69 49 0.45
70 9 0.08
71 52 0.47
ACGTcount: A:0.48, C:0.20, G:0.05, T:0.27
Consensus pattern (68 bp):
ACAATTCCAATCAGAATCAATAATTACAAGCACTAAATTAATAATTCTACAACTAATTAACTTAA
CTA
Found at i:7590907 original size:71 final size:69
Alignment explanation
Indices: 7590737--7590927 Score: 240
Period size: 69 Copynumber: 2.7 Consensus size: 69
7590727 ACTTAAATCG
* * * * * *
7590737 ACAATTCCAATCAGAATCAATAATTACAAGCACGAAATTGAATAACTCTACAACTAATTAACTTA
1 ACAATTCCAATCAGAATCCATAATTACAAGCACTAAATTAAATAATTCTACAACCAATTAACCTA
7590802 ACTA
66 ACTA
* * * *
7590806 GCAATTACAATCAGAA-CCAATAATTACAAGCACTAAAATAAATAATTCTACAACCAGTTAACAA
1 ACAATTCCAATCAGAATCC-ATAATTACAAGCACTAAATTAAATAATTCTACAACCAATTAAC--
7590870 CTAACTA
63 CTAACTA
* *
7590877 ACAATTCCAATAAGAATCCATAATTACAAGCACTAAATTATATAATTCTAC
1 ACAATTCCAATCAGAATCCATAATTACAAGCACTAAATTAAATAATTCTAC
7590928 TATTAATTAA
Statistics
Matches: 103, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
68 1 0.01
69 51 0.50
71 49 0.48
72 2 0.02
ACGTcount: A:0.49, C:0.20, G:0.05, T:0.26
Consensus pattern (69 bp):
ACAATTCCAATCAGAATCCATAATTACAAGCACTAAATTAAATAATTCTACAACCAATTAACCTA
ACTA
Found at i:7591824 original size:19 final size:19
Alignment explanation
Indices: 7591800--7591836 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
7591790 TTTCTTATAC
7591800 TTTCAT-TTTCAAGAATTTT
1 TTTCATATTTCAA-AATTTT
7591819 TTTCATATTTCAAAATTT
1 TTTCATATTTCAAAATTT
7591837 AGATCCAACC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.30, C:0.11, G:0.03, T:0.57
Consensus pattern (19 bp):
TTTCATATTTCAAAATTTT
Found at i:7594805 original size:21 final size:21
Alignment explanation
Indices: 7594781--7594832 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
7594771 AGTGTTTGCT
*
7594781 TTCAGTTTAGCTCTCATGAGC
1 TTCAGTTTAACTCTCATGAGC
* *
7594802 TTCAG-TTAACTCTTATGAGT
1 TTCAGTTTAACTCTCATGAGC
7594822 TTCAGTTTAAC
1 TTCAGTTTAAC
7594833 CCTAATTGGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 17 0.63
21 10 0.37
ACGTcount: A:0.23, C:0.19, G:0.15, T:0.42
Consensus pattern (21 bp):
TTCAGTTTAACTCTCATGAGC
Found at i:7594885 original size:42 final size:42
Alignment explanation
Indices: 7594809--7594933 Score: 160
Period size: 42 Copynumber: 3.0 Consensus size: 42
7594799 AGCTTCAGTT
* *
7594809 AACTCTTATGAGTTTCAGTTTAACCCTAATTGGGTTTCAGTCC
1 AACTCTTATGAGCTTCAGTTTAACCCTTA-TGGGTTTCAGTCC
* * * *
7594852 AGCTCTTTTGAGCTTCAGTTTAACCCTTATGGGTTTCCGTTC
1 AACTCTTATGAGCTTCAGTTTAACCCTTATGGGTTTCAGTCC
* * *
7594894 AACTCCTATGAGCTTCCGTTCAACCCTTATGGGTTTCAGT
1 AACTCTTATGAGCTTCAGTTTAACCCTTATGGGTTTCAGT
7594934 TTAACACTTA
Statistics
Matches: 70, Mismatches: 12, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
42 45 0.64
43 25 0.36
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.39
Consensus pattern (42 bp):
AACTCTTATGAGCTTCAGTTTAACCCTTATGGGTTTCAGTCC
Found at i:7594943 original size:21 final size:21
Alignment explanation
Indices: 7594780--7594950 Score: 112
Period size: 21 Copynumber: 8.1 Consensus size: 21
7594770 CAGTGTTTGC
* * *
7594780 TTTCAGTTTAGCTCTCATGAG
1 TTTCAGTTTAACCCTTATGAG
* *
7594801 CTTCAG-TTAACTCTTATGAG
1 TTTCAGTTTAACCCTTATGAG
* *
7594821 TTTCAGTTTAACCCTAATTGGG
1 TTTCAGTTTAACCCTTA-TGAG
** * * *
7594843 TTTCAGTCCAGCTCTTTTGAG
1 TTTCAGTTTAACCCTTATGAG
* *
7594864 CTTCAGTTTAACCCTTATGGG
1 TTTCAGTTTAACCCTTATGAG
* *
7594885 TTTCCGTTCAACTCC-TATGAG
1 TTTCAGTTTAAC-CCTTATGAG
* * * *
7594906 CTTCCGTTCAACCCTTATGGG
1 TTTCAGTTTAACCCTTATGAG
* *
7594927 TTTCAGTTTAACACTTATGTG
1 TTTCAGTTTAACCCTTATGAG
7594948 TTT
1 TTT
7594951 TAGTGTAGCC
Statistics
Matches: 114, Mismatches: 32, Indels: 8
0.74 0.21 0.05
Matches are distributed among these distances:
20 19 0.17
21 79 0.69
22 16 0.14
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.42
Consensus pattern (21 bp):
TTTCAGTTTAACCCTTATGAG
Found at i:7596445 original size:19 final size:19
Alignment explanation
Indices: 7596421--7596458 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
7596411 CAAACACACT
7596421 TCACACACTTATGAAACTA
1 TCACACACTTATGAAACTA
7596440 TCACACACTTATGAAACTA
1 TCACACACTTATGAAACTA
7596459 ACTCATGCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.26, G:0.05, T:0.26
Consensus pattern (19 bp):
TCACACACTTATGAAACTA
Found at i:7597410 original size:34 final size:34
Alignment explanation
Indices: 7597367--7597475 Score: 141
Period size: 34 Copynumber: 3.3 Consensus size: 34
7597357 TTTTTAAAAA
*
7597367 AAATTAATTAAATTAGGTTTTAAGGTTTTTAAGT
1 AAATTAATTAAATTAGGATTTAAGGTTTTTAAGT
** *
7597401 AAATTAATTAAATTAGGATTTAAAATTTTTAAGA
1 AAATTAATTAAATTAGGATTTAAGGTTTTTAAGT
* * *
7597435 AAATTAAATAAATTAGGGTTT-AGGTTTTTAAAT
1 AAATTAATTAAATTAGGATTTAAGGTTTTTAAGT
7597468 AAA-TAATT
1 AAATTAATT
7597476 TTGTGTTTAG
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
32 4 0.06
33 11 0.17
34 49 0.77
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.43
Consensus pattern (34 bp):
AAATTAATTAAATTAGGATTTAAGGTTTTTAAGT
Found at i:7597976 original size:14 final size:14
Alignment explanation
Indices: 7597945--7597991 Score: 67
Period size: 14 Copynumber: 3.3 Consensus size: 14
7597935 TTTTTTATAG
7597945 TAGTTATTGAAAAAA
1 TAGTT-TTGAAAAAA
* *
7597960 TAGTTTTGAGAAGA
1 TAGTTTTGAAAAAA
7597974 TAGTTTTGAAAAAA
1 TAGTTTTGAAAAAA
7597988 TAGT
1 TAGT
7597992 GTCAAAATCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
14 23 0.82
15 5 0.18
ACGTcount: A:0.45, C:0.00, G:0.19, T:0.36
Consensus pattern (14 bp):
TAGTTTTGAAAAAA
Found at i:7598063 original size:124 final size:126
Alignment explanation
Indices: 7597559--7598066 Score: 671
Period size: 125 Copynumber: 4.1 Consensus size: 126
7597549 GTTTTGTTTT
* *
7597559 TTTTTCTACAGTAGTT-TCT-AAAAAATTAATTTTGAGAAGAT-GATTCT-AAAAAGATAATGTT
1 TTTTTCTACAGTAGTTCT-TGAAAAAA-TAATTTTGAGAAGATAGATTCTGAAAAA-ATAGTGTC
* * *
7597620 AAAAACGCTTCAAGCAGGATGCACTGTCAGTATAAGTACTGAAAAAAGCTCCTACGTGGATGCTC
63 AAAAACGCTTCAAGCAGGATGCACTGTCAGTAAAATTACTGAAAAAAGCTCC-ACGTGGACGCTC
7597685 TTTTTCTACAGTAGTTCTT-AAAAAATAATTTTGAGAAGATAG-TTCTGAAAAAATAGTGTCAAA
1 TTTTTCTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGATAGATTCTGAAAAAATAGTGTCAAA
7597748 AACGCTTCAAGCAGGATGCACTGTCAGTAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
66 AACGCTTCAAGCAGGATGCACTGTCAGTAAAATTACTGAAAAAAGCT-CCACGTGGACGCTC
** * * *
7597810 TTTTTCTACAGTAGTTCTTGAAAAAATAATTTTGAGAAG-GCGCTTTTGAAAAAATAGTGTAAAA
1 TTTTTCTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGATAGATTCTGAAAAAATAGTGTCAAA
* * * *
7597874 AATGCTTCAAGCA-GATGCACTGTCAGCAAAATTACTGAAAAAAGCTCTCACGTGAACACT-
66 AACGCTTCAAGCAGGATGCACTGTCAGTAAAATTACTGAAAAAAGCTC-CACGTGGACGCTC
* * * * *
7597934 TTTTTTTATAGTAGTTATTGAAAAAATAGTTTTGAGAAGATAG-TTTTGAAAAAATAGTGTCAAA
1 TTTTTCTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGATAGATTCTGAAAAAATAGTGTCAAA
* *
7597998 ATCGCTTCAAGCAGGTTGCACTGTCAGTAAAATTACTG-AAAAAGCTTCCACGTAGG-CGCTC
66 AACGCTTCAAGCAGGATGCACTGTCAGTAAAATTACTGAAAAAAGC-TCCACGT-GGACGCTC
7598059 TTTTTCTA
1 TTTTTCTA
7598067 TAGTTTCGTG
Statistics
Matches: 343, Mismatches: 27, Indels: 25
0.87 0.07 0.06
Matches are distributed among these distances:
124 82 0.24
125 179 0.52
126 81 0.24
127 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (126 bp):
TTTTTCTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGATAGATTCTGAAAAAATAGTGTCAAA
AACGCTTCAAGCAGGATGCACTGTCAGTAAAATTACTGAAAAAAGCTCCACGTGGACGCTC
Found at i:7599540 original size:18 final size:18
Alignment explanation
Indices: 7599504--7599540 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7599494 GGAAAAGGAA
* *
7599504 ACATATAAGGGTTAGGAT
1 ACATATAAGGGCTAAGAT
7599522 ACATATAAGGGCTAAGAT
1 ACATATAAGGGCTAAGAT
7599540 A
1 A
7599541 TGAACCTGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.43, C:0.08, G:0.24, T:0.24
Consensus pattern (18 bp):
ACATATAAGGGCTAAGAT
Found at i:7601322 original size:379 final size:379
Alignment explanation
Indices: 7600618--7601376 Score: 1232
Period size: 379 Copynumber: 2.0 Consensus size: 379
7600608 CTTACAAGGT
7600618 TATACGAAACCTTAAAACACGCTTAATAGTGTATCGGGACTAAACCGATCACACATAAAAGCTTT
1 TATACGAAACCTTAAAACACGCTTAATAGTGTATCGGGACTAAACCGATCACACATAAAAGCTTT
*
7600683 CAGACACTTAGAAAAATTATACAATCACAGGTCACACGCCCGCGTGAACAGGCCGTGTGACTCAT
66 CAGACACTTAGAAAAATTATACAATCACAGGTCACACGCCCGCGTGAACAGCCCGTGTGACTCAT
* * ** *
7600748 ACGGATACCAAACACGCTTGTGTCATAGGCCGTGTGAAAACAAGGCATACATACTGACTTGTACC
131 ACAGATACCAAAAACGCCCGTATCATAGGCCGTGTGAAAACAAGGCATACATACTGACTTGTACC
* * *
7600813 ATACGGCCGAAGACATGCCCATGTGCCTTGACCGTGGTCAAAACTGACTTGGGTCACACGGCTAA
196 ACACAGCCGAAGACATGCCCATGTGCCTTGACCATGGTCAAAACTGACTTGGGTCACACGGCTAA
* * *
7600878 CCACACGCCCGTGTGTCTACCCCGCGTACCCTTTGAAATGGTCACACACGCCTATGTGCCAAGGC
261 CCACACGCCCGTGTGTCTACCCCACGTACCCTTTGAAATGGCCACACACGCCCATGTGCCAAGGC
7600943 TGTGTACCTCACACGGCCACCAGACACGCCCATGTGTCTAGGCCGTGCTCAAGA
326 TGTGTACCTCACACGGCCACCAGACACGCCCATGTGTCTAGGCCGTGCTCAAGA
* * *
7600997 TATAGGAAACCTTAAAACATGCTTAATAGTGGT-TCGGGACTAAACCGATCACATATAAAAGCTT
1 TATACGAAACCTTAAAACACGCTTAATAGT-GTATCGGGACTAAACCGATCACACATAAAAGCTT
* * *
7601061 TCGGACACTTAGAAAAATTATGCAATCACAGGTCACACGCCCGCTTGAACAGCCCGTGTGACTCA
65 TCAGACACTTAGAAAAATTATACAATCACAGGTCACACGCCCGCGTGAACAGCCCGTGTGACTCA
* * *
7601126 TACAGTTACCAAAAATGCCCGTATCATAGGTCGTGTGAAAACAAGGCATACATACTGACTTGTAC
130 TACAGATACCAAAAACGCCCGTATCATAGGCCGTGTGAAAACAAGGCATACATACTGACTTGTAC
* * *
7601191 CACACAGCCGGAGACATGCCCGTGTGCCTTGACCATGGTCGAAACTGACTTGGGTCACACGGCTA
195 CACACAGCCGAAGACATGCCCATGTGCCTTGACCATGGTCAAAACTGACTTGGGTCACACGGCTA
* * * *
7601256 ATCGCACGCCCTTGTGTCTAGCCCACGTACCCTTTGAAATGGCCACACACGCCCATGTGCCAAGG
260 ACCACACGCCCGTGTGTCTACCCCACGTACCCTTTGAAATGGCCACACACGCCCATGTGCCAAGG
* *
7601321 CTGTGTACCTCGCACGGCCACCAGACACGCCTATGTGTCTAGGCCGTGCTCAAGA
325 CTGTGTACCTCACACGGCCACCAGACACGCCCATGTGTCTAGGCCGTGCTCAAGA
7601376 T
1 T
7601377 TGACTTTAAA
Statistics
Matches: 349, Mismatches: 30, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
379 347 0.99
380 2 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (379 bp):
TATACGAAACCTTAAAACACGCTTAATAGTGTATCGGGACTAAACCGATCACACATAAAAGCTTT
CAGACACTTAGAAAAATTATACAATCACAGGTCACACGCCCGCGTGAACAGCCCGTGTGACTCAT
ACAGATACCAAAAACGCCCGTATCATAGGCCGTGTGAAAACAAGGCATACATACTGACTTGTACC
ACACAGCCGAAGACATGCCCATGTGCCTTGACCATGGTCAAAACTGACTTGGGTCACACGGCTAA
CCACACGCCCGTGTGTCTACCCCACGTACCCTTTGAAATGGCCACACACGCCCATGTGCCAAGGC
TGTGTACCTCACACGGCCACCAGACACGCCCATGTGTCTAGGCCGTGCTCAAGA
Found at i:7602293 original size:47 final size:47
Alignment explanation
Indices: 7602221--7602351 Score: 174
Period size: 47 Copynumber: 2.8 Consensus size: 47
7602211 CACAATCAAT
* *
7602221 AAGTACCTATACCATGGCCCGTAGCCAAATCAATGTAACTT-ATCCCA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAA-TTCATCACA
* * * * *
7602268 GAGTACCTATATCATGGCTCATAGCCAAATCAAGGTAATTCCTCACA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAATTCATCACA
*
7602315 AAGTACCTATACCATGGCCCGTAGCCAAATTAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
7602352 TTTATCGCTC
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
46 2 0.03
47 69 0.97
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAATTCATCACA
Found at i:7604242 original size:24 final size:24
Alignment explanation
Indices: 7604197--7604243 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
7604187 GTTATAAAAA
*
7604197 ATTATAAAATAAAAATTAATTAAT
1 ATTATAAAATAAAAAATAATTAAT
7604221 ATTATATAAATAAAAAAT-ATTAA
1 ATTATA-AAATAAAAAATAATTAA
7604244 ATAATATTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (24 bp):
ATTATAAAATAAAAAATAATTAAT
Found at i:7604251 original size:28 final size:26
Alignment explanation
Indices: 7604199--7604251 Score: 70
Period size: 28 Copynumber: 2.0 Consensus size: 26
7604189 TATAAAAAAT
* *
7604199 TATAAAATAAAAATTAATTAATATTA
1 TATAAAAAAAAAATTAAATAATATTA
7604225 TATAAATAAAAAATATTAAATAATATT
1 TATAAA-AAAAAA-ATTAAATAATATT
7604252 CAAAAATTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.26
27 5 0.22
28 12 0.52
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (26 bp):
TATAAAAAAAAAATTAAATAATATTA
Found at i:7609732 original size:13 final size:13
Alignment explanation
Indices: 7609710--7609742 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
7609700 TTGCTTTAGT
7609710 TTAG-TTAGTTAA
1 TTAGTTTAGTTAA
7609722 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
7609735 TTAGTTTA
1 TTAGTTTA
7609743 ATAAACAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (13 bp):
TTAGTTTAGTTAA
Found at i:7617818 original size:13 final size:13
Alignment explanation
Indices: 7617796--7617828 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
7617786 TTGCTTTAGT
7617796 TTAG-TTAGTTAA
1 TTAGTTTAGTTAA
7617808 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
7617821 TTAGTTTA
1 TTAGTTTA
7617829 ATAAATAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (13 bp):
TTAGTTTAGTTAA
Found at i:7637348 original size:39 final size:39
Alignment explanation
Indices: 7637294--7637374 Score: 144
Period size: 39 Copynumber: 2.1 Consensus size: 39
7637284 TGTGAATATA
*
7637294 TATATGCAAGAATTATATCCGGACTTTATGTCCGCAGGC
1 TATATGCAAGAATTATATCCGGACTTTAGGTCCGCAGGC
*
7637333 TATATGCGAGAATTATATCCGGACTTTAGGTCCGCAGGC
1 TATATGCAAGAATTATATCCGGACTTTAGGTCCGCAGGC
7637372 TAT
1 TAT
7637375 GCGCTGGACA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (39 bp):
TATATGCAAGAATTATATCCGGACTTTAGGTCCGCAGGC
Found at i:7645323 original size:65 final size:65
Alignment explanation
Indices: 7645219--7645348 Score: 251
Period size: 65 Copynumber: 2.0 Consensus size: 65
7645209 AAATATGTTA
7645219 GTTTTCAAGTATGAATTTAGCCAAAAGAATTATATTTGGGCTTGGGATAATATTCCGAGGATTTG
1 GTTTTCAAGTATGAATTTAGCCAAAAGAATTATATTTGGGCTTGGGATAATATTCCGAGGATTTG
*
7645284 GTTTTCAAGTATGAATTTAGCCAAAAGTATTATATTTGGGCTTGGGATAATATTCCGAGGATTTG
1 GTTTTCAAGTATGAATTTAGCCAAAAGAATTATATTTGGGCTTGGGATAATATTCCGAGGATTTG
7645349 AACTTGTTCC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.38
Consensus pattern (65 bp):
GTTTTCAAGTATGAATTTAGCCAAAAGAATTATATTTGGGCTTGGGATAATATTCCGAGGATTTG
Found at i:7646473 original size:12 final size:12
Alignment explanation
Indices: 7646458--7646492 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
7646448 AATTTAAATT
*
7646458 TTATTAGGATTA
1 TTATTAAGATTA
7646470 TTATTAAGATTA
1 TTATTAAGATTA
*
7646482 TTATTTAGATT
1 TTATTAAGATT
7646493 TAATTTTAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.54
Consensus pattern (12 bp):
TTATTAAGATTA
Found at i:7647230 original size:11 final size:12
Alignment explanation
Indices: 7647205--7647233 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
7647195 TTCATCCATA
7647205 TTTTTAATTATT
1 TTTTTAATTATT
7647217 TTTTTAATTATT
1 TTTTTAATTATT
7647229 TTTTT
1 TTTTT
7647234 CAAGTACGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTTAATTATT
Found at i:7648024 original size:25 final size:25
Alignment explanation
Indices: 7647990--7648041 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
7647980 ACTATTATTT
7647990 ACATACAAAATACTCTCCCAGTCTA
1 ACATACAAAATACTCTCCCAGTCTA
*
7648015 ACATACAAAATACTCTCCTAGTCTA
1 ACATACAAAATACTCTCCCAGTCTA
7648040 AC
1 AC
7648042 TCCGAGAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.40, C:0.31, G:0.04, T:0.25
Consensus pattern (25 bp):
ACATACAAAATACTCTCCCAGTCTA
Found at i:7649051 original size:16 final size:18
Alignment explanation
Indices: 7649023--7649056 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
7649013 TTAAAATTGG
7649023 ATTGAGAAAATT-ATTTA
1 ATTGAGAAAATTAATTTA
7649040 ATTGAG-AAATTAATTTA
1 ATTGAGAAAATTAATTTA
7649057 GTTAATTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.41
Consensus pattern (18 bp):
ATTGAGAAAATTAATTTA
Found at i:7649446 original size:19 final size:19
Alignment explanation
Indices: 7649418--7649454 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
7649408 AAGTAGTGAG
7649418 AATTTATTTTCT-AGAATA
1 AATTTATTTTCTAAGAATA
7649436 AATTATATTTTCTAAGAAT
1 AATT-TATTTTCTAAGAAT
7649455 TTCGATTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 8 0.47
20 5 0.29
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (19 bp):
AATTTATTTTCTAAGAATA
Found at i:7653014 original size:27 final size:26
Alignment explanation
Indices: 7652960--7653011 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
7652950 TTTGTGATAT
7652960 TTTCACCTAAAAAATTTTAAAATAAA
1 TTTCACCTAAAAAATTTTAAAATAAA
7652986 TTTCACCTAAAAAATTTTAAAATAAA
1 TTTCACCTAAAAAATTTTAAAATAAA
7653012 ATTATCAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.35
Consensus pattern (26 bp):
TTTCACCTAAAAAATTTTAAAATAAA
Found at i:7661768 original size:42 final size:41
Alignment explanation
Indices: 7661721--7661799 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
7661711 CTATGTACCT
*
7661721 GAAAAAATAAAAAATAAAATAGAATTAAACGTTTTGATCTTG
1 GAAAAAATAAAAAA-AAAATAGAATTAAAAGTTTTGATCTTG
* *
7661763 GAAAAAATAAAATAAAAATTGAATTAAAAGTTTTGAT
1 GAAAAAATAAAAAAAAAATAGAATTAAAAGTTTTGAT
7661800 TAAAATTTCG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
41 21 0.62
42 13 0.38
ACGTcount: A:0.57, C:0.03, G:0.11, T:0.29
Consensus pattern (41 bp):
GAAAAAATAAAAAAAAAATAGAATTAAAAGTTTTGATCTTG
Found at i:7662551 original size:10 final size:9
Alignment explanation
Indices: 7662535--7662583 Score: 53
Period size: 10 Copynumber: 5.0 Consensus size: 9
7662525 TTAATTTCTA
7662535 AAAATAAAT
1 AAAATAAAT
7662544 ACAAATAAAT
1 A-AAATAAAT
*
7662554 AAAGATAATT
1 AAA-ATAAAT
7662564 AAAGATAAAT
1 AAA-ATAAAT
7662574 AAAAATAAAT
1 -AAAATAAAT
7662584 CCTAAAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
9 3 0.09
10 29 0.83
11 3 0.09
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.22
Consensus pattern (9 bp):
AAAATAAAT
Found at i:7662561 original size:20 final size:20
Alignment explanation
Indices: 7662533--7662583 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
7662523 AATTAATTTC
7662533 TAAAAATAAATACAA-ATAAA
1 TAAAAATAAATA-AAGATAAA
* *
7662553 TAAAGATAATTAAAGATAAA
1 TAAAAATAAATAAAGATAAA
7662573 TAAAAATAAAT
1 TAAAAATAAAT
7662584 CCTAAAATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 2 0.08
20 24 0.92
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.24
Consensus pattern (20 bp):
TAAAAATAAATAAAGATAAA
Found at i:7663315 original size:96 final size:95
Alignment explanation
Indices: 7663187--7663368 Score: 260
Period size: 96 Copynumber: 1.9 Consensus size: 95
7663177 TTTTTTTTTC
* *
7663187 TTTTTTTTTGCTTAAGAATATACTGAACCTTTTGACGCGAAGAGA-ATTGACAGCCAAGCACCCC
1 TTTTTTTTTGCTTAAGAACATACTGAACCTTTTGACGCGAAGAGAGA-TGACAGCCAAACACCCC
*
7663251 ACCCCGGTTACTTAGCCCAACATTCTCCTAA
65 ACCCCGGTTACTCAGCCCAACATTCTCCTAA
* * *
7663282 TTTTTATTTTTCTTAAGAACATA-TCGAACCTTTTGACGTGAAGAGAGATGACAGCCAAACACCT
1 TTTTT-TTTTGCTTAAGAACATACT-GAACCTTTTGACGCGAAGAGAGATGACAGCCAAACACCC
*
7663346 CACCCTGGTTACTCAGCCCAACA
64 CACCCCGGTTACTCAGCCCAACA
7663369 CATTCTTAAA
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
95 6 0.08
96 70 0.91
97 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (95 bp):
TTTTTTTTTGCTTAAGAACATACTGAACCTTTTGACGCGAAGAGAGATGACAGCCAAACACCCCA
CCCCGGTTACTCAGCCCAACATTCTCCTAA
Found at i:7664576 original size:8 final size:8
Alignment explanation
Indices: 7664570--7664675 Score: 120
Period size: 8 Copynumber: 14.0 Consensus size: 8
7664560 AAAAATAAAG
7664570 TAATAA-A
1 TAATAATA
7664577 TAATAATA
1 TAATAATA
7664585 TAATAATA
1 TAATAATA
7664593 TAATAATA
1 TAATAATA
7664601 TAATAATA
1 TAATAATA
7664609 TAATAA-A
1 TAATAATA
7664616 TAATAA-A
1 TAATAATA
7664623 TAAT-ATA
1 TAATAATA
7664630 -ATATAATA
1 TA-ATAATA
7664638 TAAT-ATA
1 TAATAATA
7664645 -ATATAATA
1 TA-ATAATA
7664653 TAATAA-A
1 TAATAATA
*
7664660 TAATAAAA
1 TAATAATA
*
7664668 TAAAAATA
1 TAATAATA
7664676 AAGAATAATA
Statistics
Matches: 88, Mismatches: 2, Indels: 17
0.82 0.02 0.16
Matches are distributed among these distances:
6 3 0.03
7 33 0.38
8 50 0.57
9 2 0.02
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (8 bp):
TAATAATA
Found at i:7664583 original size:3 final size:3
Alignment explanation
Indices: 7664570--7664686 Score: 94
Period size: 3 Copynumber: 41.0 Consensus size: 3
7664560 AAAAATAAAG
7664570 TAA TAAA TAA TAA T-A TAA TAA T-A TAA TAA T-A TAA TAA T-A TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7664612 TAAA TAA TAAA TAA T-A TAA T-A TAA T-A TAA T-A TAA T-A TAA T-A
1 T-AA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
7664653 TAA TAAA TAA TAA -AA TAA AAA TAAA GAA TAA TAA
1 TAA T-AA TAA TAA TAA TAA TAA T-AA TAA TAA TAA
7664687 AAATTAGGTT
Statistics
Matches: 94, Mismatches: 4, Indels: 32
0.72 0.03 0.25
Matches are distributed among these distances:
2 22 0.23
3 58 0.62
4 14 0.15
ACGTcount: A:0.67, C:0.00, G:0.01, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:7664583 original size:10 final size:10
Alignment explanation
Indices: 7664570--7664687 Score: 97
Period size: 10 Copynumber: 11.7 Consensus size: 10
7664560 AAAAATAAAG
7664570 TAATAAATAA
1 TAATAAATAA
7664580 TAATATAATAATA
1 TAATA-AAT-A-A
7664593 TAATAATATAA
1 TAATAA-ATAA
7664604 TAATATAATAAA
1 TAATA-AAT-AA
7664616 TAATAAATAA
1 TAATAAATAA
7664626 T-AT-AAT-A
1 TAATAAATAA
7664633 TAATATAAT-A
1 TAATA-AATAA
7664643 TAATATAAT-A
1 TAATA-AATAA
7664653 TAATAAATAA
1 TAATAAATAA
7664663 T-A-AAATAA
1 TAATAAATAA
* *
7664671 AAATAAAGAA
1 TAATAAATAA
7664681 TAATAAA
1 TAATAAA
7664688 AATTAGGTTG
Statistics
Matches: 93, Mismatches: 3, Indels: 24
0.77 0.03 0.20
Matches are distributed among these distances:
7 2 0.02
8 11 0.12
9 7 0.08
10 40 0.43
11 14 0.15
12 11 0.12
13 8 0.09
ACGTcount: A:0.67, C:0.00, G:0.01, T:0.32
Consensus pattern (10 bp):
TAATAAATAA
Found at i:7664589 original size:5 final size:5
Alignment explanation
Indices: 7664570--7664661 Score: 99
Period size: 5 Copynumber: 19.0 Consensus size: 5
7664560 AAAAATAAAG
7664570 TAATA -AATAA TAATA T-A-A TAATA TAATA -ATATAA TAATA TAATA
1 TAATA TAAT-A TAATA TAATA TAATA TAATA TA-AT-A TAATA TAATA
7664614 -AATAA TAA-A TAATA TAATA TAATA TAATA TAATA TAATA TAATA -AATA
1 TAAT-A TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
7664662 ATAAAATAAA
Statistics
Matches: 77, Mismatches: 0, Indels: 21
0.79 0.00 0.21
Matches are distributed among these distances:
3 2 0.03
4 17 0.22
5 49 0.64
6 8 0.10
7 1 0.01
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (5 bp):
TAATA
Found at i:7668281 original size:10 final size:9
Alignment explanation
Indices: 7668267--7668305 Score: 51
Period size: 10 Copynumber: 4.0 Consensus size: 9
7668257 TAAATTCTAA
7668267 AAAATAAAT
1 AAAATAAAT
7668276 ACAAATAAAT
1 A-AAATAAAT
7668286 AAAGATAAAT
1 AAA-ATAAAT
7668296 GAAAATAAAT
1 -AAAATAAAT
7668306 CCTAAAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
9 3 0.11
10 21 0.78
11 3 0.11
ACGTcount: A:0.72, C:0.03, G:0.05, T:0.21
Consensus pattern (9 bp):
AAAATAAAT
Found at i:7671678 original size:46 final size:46
Alignment explanation
Indices: 7671611--7671827 Score: 283
Period size: 46 Copynumber: 4.7 Consensus size: 46
7671601 TGGCAACTTG
* *
7671611 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* * *
7671657 TGTGTAAGACCATAGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
*
7671703 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* ** * *
7671749 AGAATAAGACTATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG-AAA
* * * *
7671795 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
7671828 TCACGTCAAA
Statistics
Matches: 152, Mismatches: 18, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
45 1 0.01
46 151 0.99
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
Found at i:7671807 original size:138 final size:130
Alignment explanation
Indices: 7671562--7671827 Score: 354
Period size: 138 Copynumber: 2.0 Consensus size: 130
7671552 AGTGTGCTCT
* *
7671562 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACTTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGTGAGTAAGACCATGGT
* * * *
7671627 TGAAAGATACCATGGCAACCTAATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACATAACATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
*
7671692 CTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTG---TG---AG--TAAG
* *
7671757 ACTATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACAC
58 ACCATGGTTGAAAGATACCATGGCAACATAACATG-AAATGAGTAAGACCATAGTTGAAAGACAC
*
7671821 TATGGCA
122 CATGGCA
7671828 TCACGTCAAA
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
130 47 0.40
133 2 0.02
136 1 0.01
137 1 0.01
138 66 0.56
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.23
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGTGAGTAAGACCATGGT
TGAAAGATACCATGGCAACATAACATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
Found at i:7674979 original size:81 final size:81
Alignment explanation
Indices: 7674822--7674985 Score: 233
Period size: 81 Copynumber: 2.0 Consensus size: 81
7674812 TCCCTCTTTT
* * *
7674822 GTATCCAAGCTAACTTATTTGAGTAATAAAGATACTTTCACATTCTCTCAACTTTGGCATTATTC
1 GTATCCAAGCTAACTTATTTGAGTAATAAAGACACTTCCACATTCTCTCAACTTTGACATTATTC
* *
7674887 TTTTGTTCTAATCTAA
66 TCTTGTGCTAATCTAA
* *
7674903 GTATCCAAGCTAGCTTATTTGAGTAATAAAGACACTTCCACATTCTC-CTAACTCTT-ACATTCT
1 GTATCCAAGCTAACTTATTTGAGTAATAAAGACACTTCCACATTCTCTC-AACT-TTGACATTAT
7674966 TCTCTTGTGCTAATCTAA
64 TCTCTTGTGCTAATCTAA
7674984 GT
1 GT
7674986 TCCCTTTTCC
Statistics
Matches: 74, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 1 0.01
81 71 0.96
82 2 0.03
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (81 bp):
GTATCCAAGCTAACTTATTTGAGTAATAAAGACACTTCCACATTCTCTCAACTTTGACATTATTC
TCTTGTGCTAATCTAA
Found at i:7678670 original size:21 final size:21
Alignment explanation
Indices: 7678646--7678685 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
7678636 CTAGAAAAAT
7678646 GAAGAAAAGAA-AAGAGGAAGA
1 GAAGAAAA-AATAAGAGGAAGA
7678667 GAAGAAAAAATAAGAGGAA
1 GAAGAAAAAATAAGAGGAA
7678686 ACTAAAAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.03
Consensus pattern (21 bp):
GAAGAAAAAATAAGAGGAAGA
Found at i:7680270 original size:14 final size:14
Alignment explanation
Indices: 7680251--7680295 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
7680241 TTAATTTTTT
7680251 TAATATTTATATTA
1 TAATATTTATATTA
7680265 TAATATTATATATT-
1 TAATATT-TATATTA
7680279 T-A-ATTT-TATTA
1 TAATATTTATATTA
7680290 TAATAT
1 TAATAT
7680296 ATAAACATCA
Statistics
Matches: 27, Mismatches: 0, Indels: 9
0.75 0.00 0.25
Matches are distributed among these distances:
10 4 0.15
11 2 0.07
12 4 0.15
13 3 0.11
14 8 0.30
15 6 0.22
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
TAATATTTATATTA
Found at i:7680290 original size:17 final size:17
Alignment explanation
Indices: 7680241--7680291 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 17
7680231 TACAAACAAC
*
7680241 TTAATTTTTTTA-ATAT
1 TTAATTTTATTATATAT
7680257 TTATATTATAATATTATATAT
1 TTA-ATT-T--TATTATATAT
7680278 TTAATTTTATTATA
1 TTAATTTTATTATA
7680292 ATATATAAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 9
0.74 0.03 0.23
Matches are distributed among these distances:
16 3 0.10
17 10 0.34
18 1 0.03
19 1 0.03
20 7 0.24
21 7 0.24
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
TTAATTTTATTATATAT
Found at i:7680296 original size:22 final size:21
Alignment explanation
Indices: 7680253--7680298 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
7680243 AATTTTTTTA
*
7680253 ATATTTATATTATAATATTAT
1 ATATTTATATTATAATAATAT
* *
7680274 ATATTTAATTTTATTATAATAT
1 ATATTT-ATATTATAATAATAT
7680296 ATA
1 ATA
7680299 AACATCAAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
ATATTTATATTATAATAATAT
Found at i:7680387 original size:19 final size:19
Alignment explanation
Indices: 7680347--7680388 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
7680337 TTTTTAAATT
*
7680347 AATTTAATTTTATTATTCA
1 AATTTAATTTTATTATTAA
7680366 AATTTAATTTTATT-TTGAA
1 AATTTAATTTTATTATT-AA
7680385 AATT
1 AATT
7680389 AAACAAATTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 2 0.10
19 19 0.90
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (19 bp):
AATTTAATTTTATTATTAA
Found at i:7683301 original size:153 final size:153
Alignment explanation
Indices: 7683020--7683318 Score: 490
Period size: 153 Copynumber: 2.0 Consensus size: 153
7683010 GATCTATGGA
* * *
7683020 TTCTTTAGATTCCAACTTGGAGGCAGGTGTAACTAAGTTAGATTTACCGGAGGGGAGAACGAGGT
1 TTCTTTAGATTCCAACTTGGAGGCAGGTGTAAATAAGTTAGATATACCGGAGGGGAGAACAAGGT
* * * *
7683085 TGGAGAAGAGTTGTTCCAAAAGCAAGGATAGAAAAGATGATAATATCGAAAGTGAGATTCAGGCG
66 TGGAGAAGAGTTGTTCCAAAAGCAAGGATAGAAAAGATGATAATACCAAAAGTGAGATCCAGGCC
7683150 CTTGCTAAACTCAATCCAGGGCG
131 CTTGCTAAACTCAATCCAGGGCG
* *
7683173 TTCTTTGGATTCCAACTTGGAGGCAGGTGTAAATAAGTTAGATATACCGGAGGTGAGAACAAGGT
1 TTCTTTAGATTCCAACTTGGAGGCAGGTGTAAATAAGTTAGATATACCGGAGGGGAGAACAAGGT
* *
7683238 TGGAGAAGAGTTGTTCCAAAAGTAAGGATAGAAAAGATGATAATGCCAAAAGTGAGATCCAGGCC
66 TGGAGAAGAGTTGTTCCAAAAGCAAGGATAGAAAAGATGATAATACCAAAAGTGAGATCCAGGCC
*
7683303 CTTGTTAAACTCAATC
131 CTTGCTAAACTCAATC
7683319 TAAAGCTCCT
Statistics
Matches: 134, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
153 134 1.00
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.24
Consensus pattern (153 bp):
TTCTTTAGATTCCAACTTGGAGGCAGGTGTAAATAAGTTAGATATACCGGAGGGGAGAACAAGGT
TGGAGAAGAGTTGTTCCAAAAGCAAGGATAGAAAAGATGATAATACCAAAAGTGAGATCCAGGCC
CTTGCTAAACTCAATCCAGGGCG
Found at i:7690306 original size:3 final size:3
Alignment explanation
Indices: 7690298--7690329 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
7690288 AATCAACTGT
7690298 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7690330 CAAGATTCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:7698023 original size:4 final size:4
Alignment explanation
Indices: 7698014--7698046 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
7698004 GAACACCCAC
7698014 ACAA ACAA ACAA ACAA ACAA ACAA ACAA ACAA A
1 ACAA ACAA ACAA ACAA ACAA ACAA ACAA ACAA A
7698047 GTCCAGCAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.76, C:0.24, G:0.00, T:0.00
Consensus pattern (4 bp):
ACAA
Found at i:7699032 original size:15 final size:16
Alignment explanation
Indices: 7699012--7699044 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
7699002 ATAACCATAC
7699012 AAAAAAGAAAAAA-AA
1 AAAAAAGAAAAAAGAA
7699027 AAAAAAGAAAAAAGAA
1 AAAAAAGAAAAAAGAA
7699043 AA
1 AA
7699045 GCACTTGGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (16 bp):
AAAAAAGAAAAAAGAA
Found at i:7703496 original size:30 final size:30
Alignment explanation
Indices: 7703430--7703497 Score: 75
Period size: 31 Copynumber: 2.3 Consensus size: 30
7703420 ATATATAAAC
*
7703430 TTTAATTTGGTGCAATTATACACGTGAAAG
1 TTTAATTTGGTGCAAATATACACGTGAAAG
* * * *
7703460 TCTAATTGTGGTTCAAATATATACTTGAAA-
1 TTTAATT-TGGTGCAAATATACACGTGAAAG
7703490 TTTAATTT
1 TTTAATTT
7703498 TGATTTAATC
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
29 1 0.03
30 12 0.39
31 18 0.58
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.43
Consensus pattern (30 bp):
TTTAATTTGGTGCAAATATACACGTGAAAG
Found at i:7707430 original size:16 final size:16
Alignment explanation
Indices: 7707393--7707455 Score: 72
Period size: 16 Copynumber: 3.8 Consensus size: 16
7707383 TATTTTTTCA
*
7707393 TATTATTACTATTATCAT
1 TATTATTA-TTTTAT-AT
7707411 TATTATTATTTTATAT
1 TATTATTATTTTATAT
*
7707427 TATTATTATGTTATATT
1 TATTATTATTTTATA-T
*
7707444 TAGTATTATTTT
1 TATTATTATTTT
7707456 TTTATATTAC
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
16 16 0.40
17 16 0.40
18 8 0.20
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.63
Consensus pattern (16 bp):
TATTATTATTTTATAT
Found at i:7707453 original size:3 final size:3
Alignment explanation
Indices: 7707393--7707435 Score: 54
Period size: 3 Copynumber: 15.0 Consensus size: 3
7707383 TATTTTTTCA
* *
7707393 TAT TAT TAC TAT TAT CAT TAT TAT TAT T-T TA- TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7707436 GTTATATTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
2 4 0.12
3 30 0.88
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:7707464 original size:33 final size:34
Alignment explanation
Indices: 7707383--7707464 Score: 89
Period size: 33 Copynumber: 2.4 Consensus size: 34
7707373 TATATATTGC
* *
7707383 TATTTTTTCATATTATTACTATTATCATTATTAT
1 TATTTTTTTATATTATTACTATTATCATTAGTAT
* *
7707417 TA-TTTTATATTATTATTA-TGTTAT-ATTTAGTAT
1 TATTTTTTTA-TATTATTACTATTATCA-TTAGTAT
7707450 TATTTTTTTATATTA
1 TATTTTTTTATATTA
7707465 CATTTTTTAC
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
32 1 0.03
33 23 0.57
34 16 0.40
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (34 bp):
TATTTTTTTATATTATTACTATTATCATTAGTAT
Found at i:7708243 original size:20 final size:18
Alignment explanation
Indices: 7708218--7708256 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
7708208 CATATATGTA
7708218 TTTTTACATTATGTATATAT
1 TTTTTACA-TAT-TATATAT
*
7708238 TTTTTAGATATTATATAT
1 TTTTTACATATTATATAT
7708256 T
1 T
7708257 AAGTATTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 3 0.17
20 7 0.39
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.62
Consensus pattern (18 bp):
TTTTTACATATTATATAT
Found at i:7708720 original size:15 final size:14
Alignment explanation
Indices: 7708670--7708720 Score: 50
Period size: 15 Copynumber: 3.6 Consensus size: 14
7708660 TATATGTCTG
7708670 TTATATATG-TATA
1 TTATATATGTTATA
* *
7708683 TTGTATATGTTCATT
1 TTATATATGTT-ATA
*
7708698 TTAAATATGTTATA
1 TTATATATGTTATA
7708712 TATATATAT
1 T-TATATAT
7708721 ATATATTACG
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
13 8 0.28
14 4 0.14
15 17 0.59
ACGTcount: A:0.35, C:0.02, G:0.08, T:0.55
Consensus pattern (14 bp):
TTATATATGTTATA
Found at i:7712597 original size:50 final size:52
Alignment explanation
Indices: 7712473--7712722 Score: 269
Period size: 50 Copynumber: 4.8 Consensus size: 52
7712463 GATAATAACA
* * * * *
7712473 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA--TGTTCTCGTGATGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTTATCGT-ACGG
* *
7712524 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTTATC-T-CGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTTATCGTACGG
* * **
7712574 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTC-T-CGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTTATCGTACGG
* * *
7712624 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT--T-ATCGTACGG
* *
7712679 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCTT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTT
7712723 TACCCAAATG
Statistics
Matches: 169, Mismatches: 22, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
50 85 0.50
51 33 0.20
52 1 0.01
53 7 0.04
54 2 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.27
Consensus pattern (52 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTTATCGTACGG
Found at i:7712651 original size:100 final size:105
Alignment explanation
Indices: 7712472--7712721 Score: 359
Period size: 100 Copynumber: 2.4 Consensus size: 105
7712462 TGATAATAAC
**
7712472 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
7712537 TCCCAGACATGGTCTTATAGGGGACCTCT-T-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTATGATCTTAAGG
* *
7712574 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
7712637 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCT-ATGATCTTAAGG
* *
7712679 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
7712722 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 49 0.37
101 36 0.27
102 1 0.01
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (105 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTATGATCTTAAGG
Found at i:7712837 original size:13 final size:13
Alignment explanation
Indices: 7712816--7712847 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
7712806 ACTTGGATCA
*
7712816 TCATCAAATAAAT
1 TCATAAAATAAAT
7712829 TCATAAAATAAAT
1 TCATAAAATAAAT
7712842 TCATAA
1 TCATAA
7712848 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:7713095 original size:30 final size:30
Alignment explanation
Indices: 7713059--7713116 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
7713049 CCTCGACTCT
*
7713059 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
7713089 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
7713117 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:7713751 original size:13 final size:13
Alignment explanation
Indices: 7713681--7713753 Score: 52
Period size: 13 Copynumber: 5.9 Consensus size: 13
7713671 CTTTTGTTAT
7713681 ATATATATATATA
1 ATATATATATATA
7713694 ATA-ATATAATATA
1 ATATATAT-ATATA
*
7713707 AAATAT-TA-ATA
1 ATATATATATATA
7713718 ATA-ATCAT-TACT-
1 ATATAT-ATATA-TA
*
7713730 -TACATATATATA
1 ATATATATATATA
7713742 ATATATATATAT
1 ATATATATATAT
7713754 TAACTAGAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 20
0.67 0.04 0.29
Matches are distributed among these distances:
10 2 0.04
11 10 0.21
12 11 0.23
13 22 0.47
14 2 0.04
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.42
Consensus pattern (13 bp):
ATATATATATATA
Found at i:7715407 original size:19 final size:18
Alignment explanation
Indices: 7715385--7715425 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
7715375 GCTTATTATG
7715385 TTAATTAAGTTAGATTAA
1 TTAATTAAGTTAGATTAA
* *
7715403 CTTAATTAATTTAGGTTAA
1 -TTAATTAAGTTAGATTAA
7715422 TTAA
1 TTAA
7715426 AGATTATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.41, C:0.02, G:0.10, T:0.46
Consensus pattern (18 bp):
TTAATTAAGTTAGATTAA
Found at i:7719606 original size:32 final size:30
Alignment explanation
Indices: 7719570--7719641 Score: 101
Period size: 30 Copynumber: 2.3 Consensus size: 30
7719560 TCTACGTCAT
7719570 GACTAAAATTCCAAAAT-TTTAAAAAATATAAA
1 GACTAAAATT--AAAATGTTTAAAAAATA-AAA
7719602 GACTAAAATTAAAATGTTTAAAAAATAAAA
1 GACTAAAATTAAAATGTTTAAAAAATAAAA
*
7719632 AACTAAAATT
1 GACTAAAATT
7719642 GATCAAATAA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
30 17 0.45
31 11 0.29
32 10 0.26
ACGTcount: A:0.61, C:0.07, G:0.04, T:0.28
Consensus pattern (30 bp):
GACTAAAATTAAAATGTTTAAAAAATAAAA
Found at i:7726463 original size:2 final size:2
Alignment explanation
Indices: 7726456--7726486 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7726446 TTCCTTTTCA
7726456 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7726487 AACTAATAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7734635 original size:20 final size:22
Alignment explanation
Indices: 7734610--7734650 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
7734600 TAAATATATT
7734610 AATATATTAT-TTA-ATTATAA
1 AATATATTATATTATATTATAA
7734630 AATATATTATATTATATTATA
1 AATATATTATATTATATTATA
7734651 TTATTATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.53
21 3 0.16
22 6 0.32
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
AATATATTATATTATATTATAA
Found at i:7734648 original size:30 final size:28
Alignment explanation
Indices: 7734601--7734658 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 28
7734591 TTTATGTTTT
7734601 AAATATATTAATATATTAT-TTAATTATA
1 AAATATATTAATATATTATATT-ATTATA
7734629 AAATATATTATATTATATTATATTATTATA
1 AAATATATTA-A-TATATTATATTATTATA
7734659 TTATGTAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
28 10 0.37
29 1 0.04
30 14 0.52
31 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (28 bp):
AAATATATTAATATATTATATTATTATA
Found at i:7734898 original size:19 final size:19
Alignment explanation
Indices: 7734860--7734901 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
7734850 TGAACGAAAC
*
7734860 AAAGAAAGGAAAGAAGGAA
1 AAAGAAAGGAAAGAAAGAA
7734879 AAAGAAA-GAAAGAAAAGAA
1 AAAGAAAGGAAAG-AAAGAA
7734898 AAAG
1 AAAG
7734902 GGAGAATTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (19 bp):
AAAGAAAGGAAAGAAAGAA
Found at i:7735587 original size:18 final size:19
Alignment explanation
Indices: 7735552--7735590 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
7735542 TGAGTATTGA
7735552 TATTGAATTGAATGAAAATG
1 TATTGAATTG-ATGAAAATG
7735572 TATTGAATTG-TGAAAATG
1 TATTGAATTGATGAAAATG
7735590 T
1 T
7735591 GTGAATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.47
20 10 0.53
ACGTcount: A:0.41, C:0.00, G:0.21, T:0.38
Consensus pattern (19 bp):
TATTGAATTGATGAAAATG
Found at i:7737495 original size:10 final size:10
Alignment explanation
Indices: 7737480--7737535 Score: 71
Period size: 10 Copynumber: 5.6 Consensus size: 10
7737470 ATTCTAAACG
7737480 ATAAATACAA-
1 ATAAATA-AAT
7737490 ATAAATAAAT
1 ATAAATAAAT
7737500 ATAAATAAAT
1 ATAAATAAAT
*
7737510 ATAAATAAAG
1 ATAAATAAAT
7737520 ATAAATGAAA-
1 ATAAAT-AAAT
7737530 ATAAAT
1 ATAAAT
7737536 CCTAGAATTA
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
9 2 0.05
10 38 0.88
11 3 0.07
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.25
Consensus pattern (10 bp):
ATAAATAAAT
Found at i:7737503 original size:20 final size:19
Alignment explanation
Indices: 7737474--7737535 Score: 79
Period size: 20 Copynumber: 3.1 Consensus size: 19
7737464 AATGAAATTC
7737474 TAAACGATAAATACAAATAAA
1 TAAA-GATAAATA-AAATAAA
*
7737495 TAAATATAAATAAATATAAA
1 TAAAGATAAATAAA-ATAAA
7737515 TAAAGATAAATGAAAATAAA
1 TAAAGATAAAT-AAAATAAA
7737535 T
1 T
7737536 CCTAGAATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
19 2 0.05
20 28 0.76
21 7 0.19
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.24
Consensus pattern (19 bp):
TAAAGATAAATAAAATAAA
Found at i:7737518 original size:14 final size:14
Alignment explanation
Indices: 7737480--7737510 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
7737470 ATTCTAAACG
7737480 ATAAATACAAATAA
1 ATAAATACAAATAA
*
7737494 ATAAATATAAATAA
1 ATAAATACAAATAA
7737508 ATA
1 ATA
7737511 TAAATAAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (14 bp):
ATAAATACAAATAA
Found at i:7738534 original size:33 final size:32
Alignment explanation
Indices: 7738509--7738576 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 32
7738499 TCATTTCGGG
7738509 AAAGCACATTTATGCATTGAAATTCAATATTCA
1 AAAGCACATTTATGCATTGAAATTC-ATATTCA
7738542 AAAGCACATTTATGCATTGAAATTCAATATTCA
1 AAAGCACATTTATGCATTGAAATTC-ATATTCA
7738575 AA
1 AA
7738577 CGAGACTTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.44, C:0.15, G:0.09, T:0.32
Consensus pattern (32 bp):
AAAGCACATTTATGCATTGAAATTCATATTCA
Found at i:7753810 original size:15 final size:15
Alignment explanation
Indices: 7753790--7753819 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7753780 AACGTCGCTA
*
7753790 CCTTTCTTGATAATG
1 CCTTTCGTGATAATG
7753805 CCTTTCGTGATAATG
1 CCTTTCGTGATAATG
7753820 AGAGGCATTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.20, G:0.17, T:0.43
Consensus pattern (15 bp):
CCTTTCGTGATAATG
Found at i:7757180 original size:15 final size:16
Alignment explanation
Indices: 7757150--7757182 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
7757140 AAGCTGTGTA
*
7757150 AACACAAACGCAACAC
1 AACACAAACACAACAC
7757166 AACAC-AACACAACAC
1 AACACAAACACAACAC
7757181 AA
1 AA
7757183 ATGTGTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.61, C:0.36, G:0.03, T:0.00
Consensus pattern (16 bp):
AACACAAACACAACAC
Found at i:7766639 original size:15 final size:14
Alignment explanation
Indices: 7766617--7766648 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
7766607 CGGTTGAAAT
7766617 TTTAATTTTTATAA
1 TTTAATTTTTATAA
7766631 TTTATATTTTTATAA
1 TTTA-ATTTTTATAA
7766646 TTT
1 TTT
7766649 GTAAAGGACT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTAATTTTTATAA
Found at i:7767861 original size:18 final size:17
Alignment explanation
Indices: 7767840--7767876 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
7767830 AGAGGGAGAG
*
7767840 AGAGAGAAAAGAAGAAGA
1 AGAGAGAAAA-AAAAAGA
7767858 AGAGAGAAAAAAAAAGA
1 AGAGAGAAAAAAAAAGA
7767875 AG
1 AG
7767877 GACACAGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (17 bp):
AGAGAGAAAAAAAAAGA
Found at i:7767861 original size:20 final size:20
Alignment explanation
Indices: 7767838--7767876 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7767828 AGAGAGGGAG
* *
7767838 AGAGAGAGAAAAGAAGAAGA
1 AGAGAGAAAAAAAAAGAAGA
7767858 AGAGAGAAAAAAAAAGAAG
1 AGAGAGAAAAAAAAAGAAG
7767877 GACACAGATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (20 bp):
AGAGAGAAAAAAAAAGAAGA
Found at i:7767864 original size:2 final size:2
Alignment explanation
Indices: 7767804--7767846 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
7767794 AGAGTTATGA
*
7767804 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG GG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
7767846 A
1 A
7767847 AAAGAAGAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7767950 original size:3 final size:3
Alignment explanation
Indices: 7767938--7768030 Score: 134
Period size: 3 Copynumber: 31.3 Consensus size: 3
7767928 GTATCTCCAT
*
7767938 TTC TTC -TC TTC TTC TTC TTC TTT TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
* * * *
7767985 TTC TTC TTC TTC TTC ATC TTC ATC TTC ATC ATC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
7768031 ACCGCTCAGC
Statistics
Matches: 81, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
2 2 0.02
3 79 0.98
ACGTcount: A:0.04, C:0.32, G:0.00, T:0.63
Consensus pattern (3 bp):
TTC
Found at i:7768319 original size:30 final size:30
Alignment explanation
Indices: 7768243--7768328 Score: 86
Period size: 30 Copynumber: 2.9 Consensus size: 30
7768233 TTCAGCTCAC
*
7768243 GAGCTAAACCTTAGCTCAACTTCAGCTTAG
1 GAGCTAAACCTTAGCTCAACTTTAGCTTAG
* * * *
7768273 GAGTTTAATCTCAGCTCAACTTTAGCTTAAG
1 GAGCTAAACCTTAGCTCAACTTTAGCTT-AG
* *
7768304 G-GCTAAAGCTTAGCTC-ATTTTAGCT
1 GAGCTAAACCTTAGCTCAACTTTAGCT
7768329 CAAACCCGGT
Statistics
Matches: 45, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
29 8 0.18
30 34 0.76
31 3 0.07
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (30 bp):
GAGCTAAACCTTAGCTCAACTTTAGCTTAG
Found at i:7773357 original size:22 final size:22
Alignment explanation
Indices: 7773332--7773374 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
7773322 TATCCAAACA
7773332 ATAACAACAAAATAG-TAGCAAC
1 ATAACAACAAAAT-GTTAGCAAC
* *
7773354 ATAATAATAAAATGTTAGCAA
1 ATAACAACAAAATGTTAGCAA
7773375 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.06
22 17 0.94
ACGTcount: A:0.58, C:0.12, G:0.09, T:0.21
Consensus pattern (22 bp):
ATAACAACAAAATGTTAGCAAC
Found at i:7782530 original size:9 final size:9
Alignment explanation
Indices: 7782516--7782741 Score: 143
Period size: 9 Copynumber: 24.6 Consensus size: 9
7782506 TATTTAAGTA
7782516 TTATGTAAG
1 TTATGTAAG
*
7782525 TTATGTAAT
1 TTATGTAAG
*
7782534 TTATGATATG
1 TTATG-TAAG
* * *
7782544 ATATAT-AT
1 TTATGTAAG
*
7782552 TTATGTAAA
1 TTATGTAAG
* *
7782561 TTATAT-AT
1 TTATGTAAG
*
7782569 TTATCTAAG
1 TTATGTAAG
*
7782578 TTATATAAG
1 TTATGTAAG
7782587 TTATGTAAG
1 TTATGTAAG
*
7782596 TTATGTAAA
1 TTATGTAAG
*
7782605 TTATGATATAAAA
1 TTATG---T-AAG
*
7782618 TATATTTAAG
1 T-TATGTAAG
7782628 TATTATGTAAG
1 --TTATGTAAG
7782639 TTATGTAAG
1 TTATGTAAG
* *
7782648 TTATAT-AT
1 TTATGTAAG
*
7782656 TTATCTAAG
1 TTATGTAAG
*
7782665 TTATATAAG
1 TTATGTAAG
*
7782674 TTATATAAG
1 TTATGTAAG
*
7782683 TTATGTATG
1 TTATGTAAG
*
7782692 TTATATAAG
1 TTATGTAAG
7782701 TTATGTAAG
1 TTATGTAAG
* *
7782710 TTATATATG
1 TTATGTAAG
*
7782719 TTATATAAG
1 TTATGTAAG
*
7782728 TTATGTAAA
1 TTATGTAAG
7782737 TTATG
1 TTATG
7782742 ATATCAAATA
Statistics
Matches: 171, Mismatches: 35, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
8 16 0.09
9 131 0.77
10 7 0.04
11 8 0.05
12 2 0.01
13 4 0.02
14 3 0.02
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:7782595 original size:18 final size:18
Alignment explanation
Indices: 7782516--7782741 Score: 161
Period size: 18 Copynumber: 12.3 Consensus size: 18
7782506 TATTTAAGTA
* *
7782516 TTATGTAAGTTATGTAAT
1 TTATGTAAGTTATATAAG
* * *
7782534 TTATGATATGATATAT-AT
1 TTATG-TAAGTTATATAAG
* *
7782552 TTATGTAAATTATAT-AT
1 TTATGTAAGTTATATAAG
*
7782569 TTATCTAAGTTATATAAG
1 TTATGTAAGTTATATAAG
* *
7782587 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
* *
7782605 TTATGATATAAAATATATTTAAG
1 TTATG---T-AAGT-TATATAAG
*
7782628 TATTATGTAAGTTATGTAAG
1 --TTATGTAAGTTATATAAG
* * *
7782648 TTATAT-ATTTATCTAAG
1 TTATGTAAGTTATATAAG
*
7782665 TTATATAAGTTATATAAG
1 TTATGTAAGTTATATAAG
*
7782683 TTATGTATGTTATATAAG
1 TTATGTAAGTTATATAAG
*
7782701 TTATGTAAGTTATATATG
1 TTATGTAAGTTATATAAG
* * *
7782719 TTATATAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
7782737 TTATG
1 TTATG
7782742 ATATCAAATA
Statistics
Matches: 167, Mismatches: 31, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
17 37 0.22
18 97 0.58
19 7 0.04
20 7 0.04
21 4 0.02
22 4 0.02
23 6 0.04
25 5 0.03
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (18 bp):
TTATGTAAGTTATATAAG
Found at i:7782608 original size:27 final size:27
Alignment explanation
Indices: 7782569--7782741 Score: 159
Period size: 27 Copynumber: 6.2 Consensus size: 27
7782559 AATTATATAT
*
7782569 TTATCTAAGTTATATAAGTTATGTAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
* * *
7782596 TTATGTAAATTATGATATAAAATATATTTAAG
1 TTATGT-AAGT-T-ATAT-AAGT-TATGTAAG
* * *
7782628 TATTATGTAAGTTATGTAAGTTATAT-AT
1 --TTATGTAAGTTATATAAGTTATGTAAG
* *
7782656 TTATCTAAGTTATATAAGTTATATAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
*
7782683 TTATGTATGTTATATAAGTTATGTAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
* * *
7782710 TTATATATGTTATATAAGTTATGTAAA
1 TTATGTAAGTTATATAAGTTATGTAAG
7782737 TTATG
1 TTATG
7782742 ATATCAAATA
Statistics
Matches: 120, Mismatches: 18, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
26 22 0.18
27 59 0.49
28 4 0.03
29 5 0.04
30 7 0.06
31 6 0.05
32 8 0.07
33 3 0.03
34 6 0.05
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.47
Consensus pattern (27 bp):
TTATGTAAGTTATATAAGTTATGTAAG
Found at i:7782625 original size:114 final size:114
Alignment explanation
Indices: 7782492--7782713 Score: 313
Period size: 114 Copynumber: 1.9 Consensus size: 114
7782482 ACTCGTTATG
* * * *
7782492 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAATTTATGATATGATATAT-ATTTAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATAT-ATATATAAGTTAT
* *
7782556 GTAAATTATAT-ATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
64 ATAAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
* *
7782606 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATATATATAAGTTATAT
* * *
7782671 AAGTTATATAAGTTATGTATGTTATATAAGTTATGTAAGTTAT
66 AAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTAT
7782714 ATATGTTATA
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
112 4 0.04
113 18 0.19
114 73 0.77
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.48
Consensus pattern (114 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATATATATAAGTTATAT
AAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
Found at i:7783095 original size:24 final size:24
Alignment explanation
Indices: 7783063--7783130 Score: 111
Period size: 24 Copynumber: 2.8 Consensus size: 24
7783053 ACTTAAATGG
7783063 TAAAACGGACGATAATATTTGTGA
1 TAAAACGGACGATAATATTTGTGA
7783087 TAAAACGGA-GAATAATATTTGTGA
1 TAAAACGGACG-ATAATATTTGTGA
*
7783111 TAAAACGGACGAGAATATTT
1 TAAAACGGACGATAATATTT
7783131 CAATAATAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
23 1 0.02
24 39 0.95
25 1 0.02
ACGTcount: A:0.44, C:0.07, G:0.21, T:0.28
Consensus pattern (24 bp):
TAAAACGGACGATAATATTTGTGA
Found at i:7784071 original size:373 final size:371
Alignment explanation
Indices: 7783222--7784131 Score: 1739
Period size: 373 Copynumber: 2.4 Consensus size: 371
7783212 GAAACATACA
7783222 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
7783287 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
7783352 AGGTTGGAGAGAAGGTCAGGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAA
131 AGGTTGGAGAGAAGGTCA-GTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAA
7783417 TTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATATAATA
195 TTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATATAATA
*
7783482 AAATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAA
260 AAATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTAGAAATAAATTAAGGTTATATAAA
7783547 TATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
325 TATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
7783594 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
7783659 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
*
7783724 AGGTTTGAGAGAAGGTCATGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAA
131 AGGTTGGAGAGAAGGTCA-GTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAA
7783789 TTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATATAAT
195 TTTAAAAATATTAAATATTAAAATAAAACATTATTAATAT-AAAAAATAGTAATTTGAATATAAT
*
7783854 AATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTAGAAATAAATTAAGGTTATATAA
259 AAAATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTAGAAATAAATTAAGGTTATATAA
7783919 ATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
324 ATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
7783967 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
*
7784032 TCGATTTAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
*
7784097 AGGTTGGAGAGAAAGTCAGCTATTGTTGTAATTTT
131 AGGTTGGAGAGAAGGTCAG-TATTGTTGTAATTTT
7784132 AATGGACAAG
Statistics
Matches: 529, Mismatches: 7, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
372 234 0.44
373 295 0.56
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (371 bp):
AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
AGGTTGGAGAGAAGGTCAGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAAT
TTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATATAATAA
AATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTAGAAATAAATTAAGGTTATATAAAT
ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
Found at i:7795290 original size:22 final size:21
Alignment explanation
Indices: 7795260--7795306 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
7795250 TACAAATTAA
7795260 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
7795282 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
7795303 ATCT
1 ATCT
7795307 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:7795312 original size:19 final size:19
Alignment explanation
Indices: 7795277--7795355 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
7795267 AGATTACAAG
7795277 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
7795298 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
7795315 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
7795334 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
7795353 ATC
1 ATC
7795356 TTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
20 1 0.02
21 8 0.14
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:7795332 original size:36 final size:38
Alignment explanation
Indices: 7795277--7795349 Score: 132
Period size: 36 Copynumber: 2.0 Consensus size: 38
7795267 AGATTACAAG
7795277 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
7795315 ATCATATC-T-AAGATTGCATATCATATCTAAGATTG
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTG
7795350 CATATCTTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 26 0.74
37 1 0.03
38 8 0.23
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (38 bp):
ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
Found at i:7795364 original size:36 final size:35
Alignment explanation
Indices: 7795279--7795365 Score: 120
Period size: 36 Copynumber: 2.4 Consensus size: 35
7795269 ATTACAAGAT
*
7795279 CATATCTTCAAGATTGCATATCATATCTAAGATTG
1 CATATCTTTAAGATTGCATATCATATCTAAGATTG
* * *
7795314 TATCATATCTAAGATTGCATATCATATCTAAGATTG
1 CAT-ATCTTTAAGATTGCATATCATATCTAAGATTG
7795350 CATATCTTTAAAGATT
1 CATATCTTT-AAGATT
7795366 ATATTTCCAT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
35 6 0.14
36 37 0.86
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (35 bp):
CATATCTTTAAGATTGCATATCATATCTAAGATTG
Found at i:7797128 original size:18 final size:19
Alignment explanation
Indices: 7797087--7797131 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
7797077 AAAAAAAAGC
**
7797087 TAAAAAAAACAAAAATTTG
1 TAAAAAAAACAAAAAGCTG
*
7797106 AAAAAAAAAC-AAAAGCTG
1 TAAAAAAAACAAAAAGCTG
7797124 TAAAAAAA
1 TAAAAAAA
7797132 TGATGTGACA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 13 0.59
19 9 0.41
ACGTcount: A:0.73, C:0.07, G:0.07, T:0.13
Consensus pattern (19 bp):
TAAAAAAAACAAAAAGCTG
Found at i:7798061 original size:155 final size:152
Alignment explanation
Indices: 7797883--7798549 Score: 993
Period size: 150 Copynumber: 4.4 Consensus size: 152
7797873 TTTTACTAAA
* *
7797883 ATTTTAAAAAATAAAAT-TCGAAAATAAGCAAAATACCAACAAAGGGCTAAAATCAAAGTTTTTT
1 ATTTTAAAAAATAAAATCT-GAAAATAAGCAAAATACCAACAAAGGGCCAAAATC-AAG-GTTTT
* *
7797947 TTACTAAATTTATATAAAAAAAGGCACTAAAATAATACATTTGAAACATTATGTACTAAAATAAT
63 TTACTAAATTCATAT-AAAAAAGACACTAAAATAATACATTTGAAACATTATGTACTAAAATAAT
7798012 ATAAAAAATAAAATACGAAAATAGTAT
127 AT-AAAAATAAAATACGAAAATAGTAT
*
7798039 ATTTT-AAAAATAAAATCTGAAAATAAGCAAAATACCAACAAATGGCCAAAATCAAGGTTTTTTA
1 ATTTTAAAAAATAAAATCTGAAAATAAGCAAAATACCAACAAAGGGCCAAAATCAAGGTTTTTTA
* * **
7798103 CTAAATTTATATAAAAAAGACACTAAAATAATATATTTGAAACATTATGTAGAAAAATAATATAA
66 CTAAATTCATATAAAAAAGACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATAT--
7798168 AAAAATAAAATACGAAAATAGTAT
129 AAAAATAAAATACGAAAATAGTAT
* * * *
7798192 ATTTTTAAAAATAAAATCTGAAAATAAGCAAAATACCAACAAATGGCCAAAATTATGGTTTTCTT
1 ATTTTAAAAAATAAAATCTGAAAATAAGCAAAATACCAACAAAGGGCCAAAATCAAGGTTTT-TT
7798257 ACTAAATTCATATAAAAAAGACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATA
65 ACTAAATTCATATAAAAAAGACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATA
7798322 AAAATAAAATACGAAAATAGTAT
130 AAAATAAAATACGAAAATAGTAT
* ** * * *
7798345 ATTTTAAAAAACAAAATCCAAAAATAAGAAAAATACCAACAAA-GGCCAAAATC-AGGGTATTTA
1 ATTTTAAAAAATAAAATCTGAAAATAAGCAAAATACCAACAAAGGGCCAAAATCAAGGTTTTTTA
* * *
7798408 CTAAATTCATATGAAAAAA-ATACTAAAATAATACATTTGAAATATTATGTACTAAAATCATATA
66 CTAAATTCATAT-AAAAAAGACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATA
7798472 AAAATAAAATACGAAAATAGTAT
130 AAAATAAAATACGAAAATAGTAT
* **
7798495 ATTTTAAAAAATAAAATCGGAAAATAAAAAAAATACCAACAAAGGGCCAAAATCA
1 ATTTTAAAAAATAAAATCTGAAAATAAGCAAAATACCAACAAAGGGCCAAAATCA
7798550 CGGGAAAAAA
Statistics
Matches: 475, Mismatches: 29, Indels: 18
0.91 0.06 0.03
Matches are distributed among these distances:
150 119 0.25
151 20 0.04
152 56 0.12
153 111 0.23
154 57 0.12
155 106 0.22
156 6 0.01
ACGTcount: A:0.56, C:0.10, G:0.08, T:0.27
Consensus pattern (152 bp):
ATTTTAAAAAATAAAATCTGAAAATAAGCAAAATACCAACAAAGGGCCAAAATCAAGGTTTTTTA
CTAAATTCATATAAAAAAGACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAA
AAATAAAATACGAAAATAGTAT
Found at i:7803280 original size:82 final size:82
Alignment explanation
Indices: 7803168--7803333 Score: 323
Period size: 82 Copynumber: 2.0 Consensus size: 82
7803158 ATTGGGGTGC
7803168 ATTAACGCACTAATTGTTAATTTCAATATAGTCGAGTGGTTCCATAGGGATCAAGTACTACAACA
1 ATTAACGCACTAATTGTTAATTTCAATATAGTCGAGTGGTTCCATAGGGATCAAGTACTACAACA
7803233 GTTTGGTTGCATCCAGT
66 GTTTGGTTGCATCCAGT
7803250 ATTAACGCACTAATTGTTAATTTCAATATAGTCGAGTGGTTCCATAGGGATCAAGTACTACAACA
1 ATTAACGCACTAATTGTTAATTTCAATATAGTCGAGTGGTTCCATAGGGATCAAGTACTACAACA
*
7803315 GTTTGTTTGCATCCAGT
66 GTTTGGTTGCATCCAGT
7803332 AT
1 AT
7803334 ATCCCAGATC
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 83 1.00
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34
Consensus pattern (82 bp):
ATTAACGCACTAATTGTTAATTTCAATATAGTCGAGTGGTTCCATAGGGATCAAGTACTACAACA
GTTTGGTTGCATCCAGT
Found at i:7807702 original size:42 final size:42
Alignment explanation
Indices: 7807616--7807914 Score: 380
Period size: 42 Copynumber: 7.5 Consensus size: 42
7807606 ATAAATAAAA
* *
7807616 AATAATAACTAACTAACAATAATTAGGGTTTTTTACT-A-AA-
1 AATAATAACTAAC-AATAATAATAAGGGTTTTTTACTAACAAT
* **
7807656 AATAATAACCAACAATAATAATAATAGTTTTTTACTAACAAT
1 AATAATAACTAACAATAATAATAAGGGTTTTTTACTAACAAT
7807698 AATAATAACTAACAATAAT--TAA--GTTTTTTACTAAC---
1 AATAATAACTAACAATAATAATAAGGGTTTTTTACTAACAAT
*
7807733 AATAATAACCAACAATAATAAT-A--GTTTTTTACTAACAAT
1 AATAATAACTAACAATAATAATAAGGGTTTTTTACTAACAAT
7807772 AATAATAACTAACAATAATAATAAGGGTTTTTTACTAACAAT
1 AATAATAACTAACAATAATAATAAGGGTTTTTTACTAACAAT
*
7807814 AATAATAACTAACAATAATAATAAGGGTTTTTTACCAACAAT
1 AATAATAACTAACAATAATAATAAGGGTTTTTTACTAACAAT
* *
7807856 AATAAT---TAACAATAATAATAA-GGTCTTTTACTAAGAAT
1 AATAATAACTAACAATAATAATAAGGGTTTTTTACTAACAAT
*
7807894 AATAATAATTAACAATAATAA
1 AATAATAACTAACAATAATAA
7807915 CTAACAACAA
Statistics
Matches: 233, Mismatches: 12, Indels: 27
0.86 0.04 0.10
Matches are distributed among these distances:
35 18 0.08
36 14 0.06
37 1 0.00
38 33 0.14
39 55 0.24
40 17 0.07
41 14 0.06
42 81 0.35
ACGTcount: A:0.51, C:0.10, G:0.05, T:0.33
Consensus pattern (42 bp):
AATAATAACTAACAATAATAATAAGGGTTTTTTACTAACAAT
Found at i:7807710 original size:16 final size:16
Alignment explanation
Indices: 7807689--7807795 Score: 70
Period size: 16 Copynumber: 6.1 Consensus size: 16
7807679 ATAGTTTTTT
7807689 ACTAACAATAATAATA
1 ACTAACAATAATAATA
*
7807705 ACTAACAATAATTAAGTT
1 ACTAACAATAA-TAA-TA
** * *
7807723 TTTTACTAACAATAATA
1 ACTAAC-AATAATAATA
*
7807740 ACCAACAATAATAATA
1 ACTAACAATAATAATA
7807756 GTTTTTTACTAACAATAATAATA
1 -------ACTAACAATAATAATA
7807779 ACTAACAATAATAATA
1 ACTAACAATAATAATA
7807795 A
1 A
7807796 GGGTTTTTTA
Statistics
Matches: 69, Mismatches: 12, Indels: 20
0.68 0.12 0.20
Matches are distributed among these distances:
16 37 0.54
17 6 0.09
18 7 0.10
19 4 0.06
23 15 0.22
ACGTcount: A:0.54, C:0.12, G:0.02, T:0.32
Consensus pattern (16 bp):
ACTAACAATAATAATA
Found at i:7807826 original size:16 final size:16
Alignment explanation
Indices: 7807805--7807837 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
7807795 AGGGTTTTTT
7807805 ACTAACAATAATAATA
1 ACTAACAATAATAATA
7807821 ACTAACAATAATAATA
1 ACTAACAATAATAATA
7807837 A
1 A
7807838 GGGTTTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (16 bp):
ACTAACAATAATAATA
Found at i:7807868 original size:13 final size:13
Alignment explanation
Indices: 7807850--7807874 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7807840 GTTTTTTACC
7807850 AACAATAATAATT
1 AACAATAATAATT
7807863 AACAATAATAAT
1 AACAATAATAAT
7807875 AAGGTCTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (13 bp):
AACAATAATAATT
Found at i:7807912 original size:13 final size:12
Alignment explanation
Indices: 7807894--7807955 Score: 74
Period size: 13 Copynumber: 5.1 Consensus size: 12
7807884 TACTAAGAAT
7807894 AATAATAATTAAC
1 AATAATAA-TAAC
7807907 AATAATAACTAAC
1 AATAATAA-TAAC
*
7807920 AACAA-AA-AAC
1 AATAATAATAAC
7807930 AATAATAATCAAC
1 AATAATAAT-AAC
7807943 AATAATAATAAC
1 AATAATAATAAC
7807955 A
1 A
7807956 GCAAAAACAC
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
10 7 0.16
11 2 0.05
12 6 0.14
13 28 0.65
ACGTcount: A:0.66, C:0.13, G:0.00, T:0.21
Consensus pattern (12 bp):
AATAATAATAAC
Found at i:7807923 original size:16 final size:16
Alignment explanation
Indices: 7807891--7807953 Score: 56
Period size: 16 Copynumber: 3.7 Consensus size: 16
7807881 TTTTACTAAG
*
7807891 AATAATAATAATTAAC
1 AATAATAATAATCAAC
7807907 AATAATAACTAA-CAAC
1 AATAATAA-TAATCAAC
*
7807923 AAAAAACAATAATAATCAAC
1 ----AATAATAATAATCAAC
7807943 AATAATAATAA
1 AATAATAATAA
7807954 CAGCAAAAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 12
0.72 0.06 0.23
Matches are distributed among these distances:
16 21 0.55
17 3 0.08
19 3 0.08
20 11 0.29
ACGTcount: A:0.67, C:0.11, G:0.00, T:0.22
Consensus pattern (16 bp):
AATAATAATAATCAAC
Found at i:7807937 original size:36 final size:36
Alignment explanation
Indices: 7807894--7807970 Score: 120
Period size: 36 Copynumber: 2.1 Consensus size: 36
7807884 TACTAAGAAT
*
7807894 AATAATAATTAACAATAATAACTAACAACAAAAA-AC
1 AATAATAATCAACAATAATAA-TAACAACAAAAACAC
*
7807930 AATAATAATCAACAATAATAATAACAGCAAAAACAC
1 AATAATAATCAACAATAATAATAACAACAAAAACAC
7807966 AATAA
1 AATAA
7807971 CAATATAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
35 11 0.29
36 27 0.71
ACGTcount: A:0.66, C:0.14, G:0.01, T:0.18
Consensus pattern (36 bp):
AATAATAATCAACAATAATAATAACAACAAAAACAC
Found at i:7808060 original size:26 final size:26
Alignment explanation
Indices: 7808027--7808083 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
7808017 TATTTCTTTT
7808027 TCCTTTTCCTTCTTCTTCT-TCTCTTC
1 TCCTTTTCCTTCTTCTTCTCT-TCTTC
* *
7808053 TCCTTTTCTTTCTTTTTCTCTTCTTC
1 TCCTTTTCCTTCTTCTTCTCTTCTTC
7808079 TCCTT
1 TCCTT
7808084 GCTGCTGCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (26 bp):
TCCTTTTCCTTCTTCTTCTCTTCTTC
Found at i:7808061 original size:38 final size:37
Alignment explanation
Indices: 7808006--7808079 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 37
7807996 AAAATTGTAC
7808006 CTTCTCTTATCTATTTCTTTTTCCTTTTC-CTTCTTCTT
1 CTTCTCTTATCTATTTC--TTTCCTTTTCTCTTCTTCTT
* *
7808044 CTTCTCTTCTCCT-TTTCTTTCTTTTTCTCTTCTTCT
1 CTTCTCTTAT-CTATTTCTTTCCTTTTCTCTTCTTCT
7808080 CCTTGCTGCT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
36 9 0.28
37 8 0.25
38 13 0.41
39 2 0.06
ACGTcount: A:0.03, C:0.31, G:0.00, T:0.66
Consensus pattern (37 bp):
CTTCTCTTATCTATTTCTTTCCTTTTCTCTTCTTCTT
Found at i:7808183 original size:27 final size:27
Alignment explanation
Indices: 7808143--7808207 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
7808133 TATTGGTTAG
* *
7808143 GTGCCACCTATGCCAGAGGCACAACCA
1 GTGCCGCCTCTGCCAGAGGCACAACCA
* *
7808170 GTGCTGCCTCTGCCAGAGGCACAACCG
1 GTGCCGCCTCTGCCAGAGGCACAACCA
7808197 GTGCCGCCTCT
1 GTGCCGCCTCT
7808208 AGCACCCCCT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.20, C:0.38, G:0.26, T:0.15
Consensus pattern (27 bp):
GTGCCGCCTCTGCCAGAGGCACAACCA
Found at i:7809008 original size:15 final size:15
Alignment explanation
Indices: 7808964--7809041 Score: 56
Period size: 16 Copynumber: 5.3 Consensus size: 15
7808954 ATCCGTCTAC
* *
7808964 TTTAATTTTTTATATT
1 TTTAATTATTAATA-T
*
7808980 TTTGAATGATTAATAT
1 TTT-AATTATTAATAT
7808996 TTTAATTATTAATA-
1 TTTAATTATTAATAT
*
7809010 ATTAA--ATT-ATAT
1 TTTAATTATTAATAT
*
7809022 TTTATAATATTAATAT
1 TTTA-ATTATTAATAT
7809038 TTTA
1 TTTA
7809042 TTAAAATACC
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
11 3 0.06
12 6 0.12
13 1 0.02
14 4 0.08
15 13 0.26
16 15 0.30
17 8 0.16
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (15 bp):
TTTAATTATTAATAT
Found at i:7818547 original size:44 final size:45
Alignment explanation
Indices: 7818494--7818596 Score: 127
Period size: 44 Copynumber: 2.3 Consensus size: 45
7818484 TGTCTTTGAC
* * * *
7818494 ATGGACTTACATGAATTATTTCTGTCTCCAATGCCATA-TATAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
** *
7818538 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATA-TTATAAT
7818584 ATGGACTTACATG
1 ATGGACTTACATG
7818597 GCTCATTTCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 32 0.64
46 18 0.36
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (45 bp):
ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
Found at i:7818596 original size:46 final size:44
Alignment explanation
Indices: 7818515--7818601 Score: 138
Period size: 46 Copynumber: 1.9 Consensus size: 44
7818505 TGAATTATTT
*
7818515 CTGTCTCCAATGCCATATATAATATGGACTTACATGGCTCAATC
1 CTGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAATC
*
7818559 CTGTCTCCAAAGCCATATTTCTAATATGGACTTACATGGCTCA
1 CTGTCTCCAAAGCCATA--TATAATATGGACTTACATGGCTCA
7818602 TTTCTGTTCT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
44 16 0.41
46 23 0.59
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (44 bp):
CTGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAATC
Found at i:7825217 original size:14 final size:15
Alignment explanation
Indices: 7825195--7825224 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
7825185 GAATATCAAA
7825195 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
7825210 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
7825224 A
1 A
7825225 AGTCAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:7825472 original size:69 final size:69
Alignment explanation
Indices: 7825327--7825464 Score: 258
Period size: 69 Copynumber: 2.0 Consensus size: 69
7825317 TAGAAAGGTA
*
7825327 AACATCTTAGAAGAATAATGAATACAAAACATAAAGAAAAACCCAAAACTCCTGAAGGGAAATTA
1 AACATCTTAGAAGAATAATGAACACAAAACATAAAGAAAAACCCAAAACTCCTGAAGGGAAATTA
7825392 AGGG
66 AGGG
*
7825396 AACATCTTAGAAGAATAATGAACACAAAACATAAAGAAAAACCCAAAACTCCTGAAGGGAAATTG
1 AACATCTTAGAAGAATAATGAACACAAAACATAAAGAAAAACCCAAAACTCCTGAAGGGAAATTA
7825461 AGGG
66 AGGG
7825465 GAGATCTTCA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 67 1.00
ACGTcount: A:0.53, C:0.15, G:0.17, T:0.15
Consensus pattern (69 bp):
AACATCTTAGAAGAATAATGAACACAAAACATAAAGAAAAACCCAAAACTCCTGAAGGGAAATTA
AGGG
Found at i:7828286 original size:443 final size:443
Alignment explanation
Indices: 7827460--7828345 Score: 1531
Period size: 443 Copynumber: 2.0 Consensus size: 443
7827450 TATATAAATT
* *
7827460 TATCAATCTTAACAAGAACATCTTCAATGATGCCCCTAGAAAATCTAATGGTTTTTGTAGAAACC
1 TATCAATCTTAACAAGAACATCTTCAATGATACCCCTAGAAAATCTAATGGTTTTTATAGAAACC
* *
7827525 ATTTTTAAAAAAAAATAGAGGTCGACTTTAATTTTGAAAATGATAAACGAAAATTTGGAGTCGCC
66 ATTTTTAAAAAAAAACAGAGGTCGACTTTAATTTTGAAAATGATAAACAAAAATTTGGAGTCGCC
7827590 ACCAATCTTTTTTGTTTAGGTGTGATCGGATCACCAAGAAGTTTGGTCATTTTAATAAAACATTT
131 ACCAATCTTTTTTGTTTAGGTGTGATCGGATCACCAAGAAGTTTGGTCATTTTAATAAAACATTT
* *
7827655 TGGGTTTACTAAAACAACGATTTTGGTCTAAGAAATTTGAGAAAACGGGTTTCGGAGTCAATTAC
196 TAGGTTTACTAAAACAACGATTTTGGTCTAAGAAATTTGAGAAAACGAGTTTCGGAGTCAATTAC
* * *
7827720 GTGCAAGGAAGGATTAACACCCTCATAACACCCAAAATTGGTACCTAATTCATTAATTACTGTCC
261 GTACAAGGAAGGATTAACACCCTCATAACACCCAAAATTGGGACCTAATTCATTAATTAATGTCC
* *
7827785 TAATGTCGAAAATTGACAAGATTTAAAATAAATTTTGAAATACGATCCCTTTTTATGAATGTTTA
326 TAATGTCGAAAATTGAAAAGATTTAAAATAAATTTTGAAATACGATCCATTTTTATGAATGTTTA
7827850 GCTAACTTGAAGTGGATATTAAGATTCTCTTATTTCGAAGAAGTAAAATATCA
391 GCTAACTTGAAGTGGATATTAAGATTCTCTTATTTCGAAGAAGTAAAATATCA
* *
7827903 TATCAATCTTAACAAGAACATCTTCAATGATACCCCTAGGAAATCTCATGGTTTTTATCA-AAAC
1 TATCAATCTTAACAAGAACATCTTCAATGATACCCCTAGAAAATCTAATGGTTTTTAT-AGAAAC
***
7827967 CATTTTTTTTAAAAAACAGAGGTCGACTTTAATTTTGAAAATGATAAACAAAAATTTGGAGTCGC
65 CATTTTTAAAAAAAAACAGAGGTCGACTTTAATTTTGAAAATGATAAACAAAAATTTGGAGTCGC
*
7828032 CACCAATCTTTTTTGTTTAGGTGTGATCGGATCACCAAGAAGTTTGGTTATTTTAATAAAACATT
130 CACCAATCTTTTTTGTTTAGGTGTGATCGGATCACCAAGAAGTTTGGTCATTTTAATAAAACATT
* * **
7828097 TTAGGTTTACTAAAACAACGATTTTGGTCTACGAAATTTGAGAAAACGAGTTTGGGAGTCGGTTA
195 TTAGGTTTACTAAAACAACGATTTTGGTCTAAGAAATTTGAGAAAACGAGTTTCGGAGTCAATTA
* *
7828162 CGTACAAGGAAGGATTAACACCCTCATAACACCTAAAATTGGGACCTAATTGATTAATTAATGTC
260 CGTACAAGGAAGGATTAACACCCTCATAACACCCAAAATTGGGACCTAATTCATTAATTAATGTC
* *
7828227 CTAATGTTGAAATTTGAAAAGATTTAAAATAAATTTTGAAATACGATCCATTTTTATGAATGTTT
325 CTAATGTCGAAAATTGAAAAGATTTAAAATAAATTTTGAAATACGATCCATTTTTATGAATGTTT
7828292 AGCTAACTTGAAGTGGATATTAAGATTCTCTTATTTCGAAGAAGTAAAATATCA
390 AGCTAACTTGAAGTGGATATTAAGATTCTCTTATTTCGAAGAAGTAAAATATCA
7828346 CATCCAACAC
Statistics
Matches: 417, Mismatches: 25, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
443 416 1.00
444 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.34
Consensus pattern (443 bp):
TATCAATCTTAACAAGAACATCTTCAATGATACCCCTAGAAAATCTAATGGTTTTTATAGAAACC
ATTTTTAAAAAAAAACAGAGGTCGACTTTAATTTTGAAAATGATAAACAAAAATTTGGAGTCGCC
ACCAATCTTTTTTGTTTAGGTGTGATCGGATCACCAAGAAGTTTGGTCATTTTAATAAAACATTT
TAGGTTTACTAAAACAACGATTTTGGTCTAAGAAATTTGAGAAAACGAGTTTCGGAGTCAATTAC
GTACAAGGAAGGATTAACACCCTCATAACACCCAAAATTGGGACCTAATTCATTAATTAATGTCC
TAATGTCGAAAATTGAAAAGATTTAAAATAAATTTTGAAATACGATCCATTTTTATGAATGTTTA
GCTAACTTGAAGTGGATATTAAGATTCTCTTATTTCGAAGAAGTAAAATATCA
Found at i:7828682 original size:130 final size:127
Alignment explanation
Indices: 7828518--7828761 Score: 398
Period size: 130 Copynumber: 1.9 Consensus size: 127
7828508 ATGTTGAGCA
*
7828518 TTGCCTTGTTTTAGAATTTAGAAAACATGAGTGAAATTCTAAAGAAATATTCGATTATTTTGAAC
1 TTGCCTTGTTTTAGAATTTAGAAAACATGAGTGAAATTCCAAAGAAATATTCGATTATTTTGAAC
* *
7828583 AAGCGAGAAATTGCAACCCAGCACGATAGGGCACGATTCCCCGAATTTCCAAACTTCGAACG
66 AAACGAGAAATTGCAACCCAGCACGATAGGGCACGATACCCCGAATTTCCAAACTTCGAACG
** *
7828645 TTGCCTTCGTTTTAAAGAATTTTTAAAACATGAGTGAAATTCCAAAGGAATATTCGATTATTTTG
1 TTGCCTT-GTTTT--AGAATTTAGAAAACATGAGTGAAATTCCAAAGAAATATTCGATTATTTTG
*
7828710 AACAAACGAGAAATTGCAACCCAGCACGATAGGGCACGATACCTCGAATTTC
63 AACAAACGAGAAATTGCAACCCAGCACGATAGGGCACGATACCCCGAATTTC
7828762 TAAGCATCAA
Statistics
Matches: 107, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
127 7 0.07
128 5 0.05
130 95 0.89
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (127 bp):
TTGCCTTGTTTTAGAATTTAGAAAACATGAGTGAAATTCCAAAGAAATATTCGATTATTTTGAAC
AAACGAGAAATTGCAACCCAGCACGATAGGGCACGATACCCCGAATTTCCAAACTTCGAACG
Found at i:7828787 original size:130 final size:130
Alignment explanation
Indices: 7828523--7828789 Score: 385
Period size: 130 Copynumber: 2.1 Consensus size: 130
7828513 GAGCATTGCC
* *
7828523 TTGTTTT--AGAATTTAGAAAACATGAGTGAAATTCTAAAGAAATATTCGATTATTTTGAACAAG
1 TTGTTTTAAAGAATTTAGAAAACATGAGTGAAATTCCAAAGAAATATTCGATTATTTTGAACAAA
* * * * *
7828586 CGAGAAATTGCAACCCAGCACGATAGGGCACGATTCCCCGAATTTCCAAACTTCGAACGTTGCCT
66 CGAGAAATTGCAACCCAGCACGATAGGGCACGATACCCCGAATTTCCAAACATCAAACATCGCCT
* ** *
7828651 TCGTTTTAAAGAATTTTTAAAACATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAA
1 TTGTTTTAAAGAATTTAGAAAACATGAGTGAAATTCCAAAGAAATATTCGATTATTTTGAACAAA
* * * *
7828716 CGAGAAATTGCAACCCAGCACGATAGGGCACGATACCTCGAATTTCTAAGCATCAAACATCGCTT
66 CGAGAAATTGCAACCCAGCACGATAGGGCACGATACCCCGAATTTCCAAACATCAAACATCGCCT
7828781 TTGTTTTAA
1 TTGTTTTAA
7828790 GGTTTAGACA
Statistics
Matches: 121, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
128 6 0.05
130 115 0.95
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (130 bp):
TTGTTTTAAAGAATTTAGAAAACATGAGTGAAATTCCAAAGAAATATTCGATTATTTTGAACAAA
CGAGAAATTGCAACCCAGCACGATAGGGCACGATACCCCGAATTTCCAAACATCAAACATCGCCT
Found at i:7829296 original size:11 final size:12
Alignment explanation
Indices: 7829271--7829303 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7829261 AAATAGAATA
7829271 AATTAAAATAAT
1 AATTAAAATAAT
7829283 AATTAAAA-AAT
1 AATTAAAATAAT
7829294 AATTTAAAAT
1 AA-TTAAAAT
7829304 TGCGTATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.26
12 14 0.74
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AATTAAAATAAT
Found at i:7829738 original size:17 final size:18
Alignment explanation
Indices: 7829711--7829745 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
7829701 ATAGAAATAC
7829711 AATATATAGAAATATAAA
1 AATATATAGAAATATAAA
7829729 AATA-ATAGAAATATAAA
1 AATATATAGAAATATAAA
7829746 TAGACAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.26
Consensus pattern (18 bp):
AATATATAGAAATATAAA
Found at i:7829812 original size:3 final size:3
Alignment explanation
Indices: 7829804--7829848 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
7829794 TGTGGAAACG
7829804 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7829849 ATATACTAGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:7832382 original size:46 final size:46
Alignment explanation
Indices: 7832330--7832593 Score: 404
Period size: 46 Copynumber: 5.7 Consensus size: 46
7832320 TGTCATAGCG
* * * *
7832330 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTA
7832376 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
* * * *
7832422 TCTTTCGACCATGGTCTTACACATTTCATATCAGGTTACCATAGTG
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
7832468 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
* * *
7832514 TCTTTCAACCACGGTCTTACTCATTTCATATCAGGCTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
*
7832560 TCTTTCAACCATGGTCTTACACATTTCATTTCAG
1 TCTTTCAACCATGGTCTTACACATTTCATATCAG
7832594 AGAGCACACT
Statistics
Matches: 199, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.02
46 195 0.98
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.39
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
Done.