Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 230 of 290
Found at i:74961752 original size:19 final size:18
Alignment explanation
Indices: 74961706--74961753 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 18
74961696 AATTCATTCG
*
74961706 ATAACAGTAACTTATCCGT
1 ATAACAGT-ACTTATCCAT
*
74961725 TTAATCAGTACTTCATCCAT
1 ATAA-CAGTACTT-ATCCAT
74961745 ATAACAGTA
1 ATAACAGTA
74961754 ATCTGTGTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (18 bp):
ATAACAGTACTTATCCAT
Found at i:74961987 original size:48 final size:49
Alignment explanation
Indices: 74961925--74962028 Score: 126
Period size: 48 Copynumber: 2.1 Consensus size: 49
74961915 GCTCCTCCTG
74961925 AGCTGATGAACAGTAAG-TTGTATCAAGCTG-GAA-ATAGTAAGCTCTGACA
1 AGCTGATGAACAGTAAGCTTGTAT-AAGCTGAGAACA-A-TAAGCTCTGACA
* * *
74961974 AGCTGA-GAACAGTAAGCTTTTATGAGCTGAGAACAATAAGCTCTTACA
1 AGCTGATGAACAGTAAGCTTGTATAAGCTGAGAACAATAAGCTCTGACA
74962022 AGCTGAT
1 AGCTGAT
74962029 ACATCGGTAA
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
48 32 0.67
49 15 0.31
50 1 0.02
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.25
Consensus pattern (49 bp):
AGCTGATGAACAGTAAGCTTGTATAAGCTGAGAACAATAAGCTCTGACA
Found at i:74962025 original size:24 final size:24
Alignment explanation
Indices: 74961962--74962027 Score: 87
Period size: 24 Copynumber: 2.8 Consensus size: 24
74961952 CTGGAAATAG
* *
74961962 TAAGCTCTGACAAGCTGAGAACAG
1 TAAGCTCTTACAAGCTGAGAACAA
* **
74961986 TAAGCTTTTATGAGCTGAGAACAA
1 TAAGCTCTTACAAGCTGAGAACAA
74962010 TAAGCTCTTACAAGCTGA
1 TAAGCTCTTACAAGCTGA
74962028 TACATCGGTA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.24
Consensus pattern (24 bp):
TAAGCTCTTACAAGCTGAGAACAA
Found at i:74962283 original size:17 final size:18
Alignment explanation
Indices: 74962261--74962296 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
74962251 CACATTGAAG
74962261 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
74962278 TGTTTTCATTGAAAACCT
1 TGTTTTCATCGAAAACCT
74962296 T
1 T
74962297 TCTTTAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.44
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:74963585 original size:28 final size:28
Alignment explanation
Indices: 74963541--74963643 Score: 134
Period size: 28 Copynumber: 3.7 Consensus size: 28
74963531 TGGCCCCTTT
* *
74963541 AGGCCCAATCTCATTCATATGGCCAATC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
74963569 GGGCTCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* * * *
74963597 AAGCCCAATCACTTTCATATGGCCCGTT
1 AGGCCCAATCACATTCATATGGCCCATC
74963625 AGGCCCAATCACATTCATA
1 AGGCCCAATCACATTCATA
74963644 GTCATGCAAT
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 63 1.00
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:74971573 original size:19 final size:19
Alignment explanation
Indices: 74971495--74971574 Score: 83
Period size: 19 Copynumber: 4.2 Consensus size: 19
74971485 CAATCATATA
*
74971495 AACAGTAATTCATTCG-AT
1 AACAGTAATTCATCCGTAT
*
74971513 AACAATAACTT-ATCCGTAT
1 AACAGTAA-TTCATCCGTAT
* *
74971532 AATCAGTATTTCATCCATAT
1 AA-CAGTAATTCATCCGTAT
*
74971552 AACAGTAATTCATCCGTGT
1 AACAGTAATTCATCCGTAT
74971571 AACA
1 AACA
74971575 CATAGCTTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
18 11 0.22
19 26 0.52
20 13 0.26
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33
Consensus pattern (19 bp):
AACAGTAATTCATCCGTAT
Found at i:74971826 original size:24 final size:24
Alignment explanation
Indices: 74971757--74971827 Score: 81
Period size: 24 Copynumber: 3.0 Consensus size: 24
74971747 TAAGCTCATC
* *
74971757 GAGCTG-GAAATAGTAAGCTCTGAT
1 GAGCTGAG-AATAGTAAACTCTTAT
* *
74971781 GGGCTGAGAATAGTAACCTCTTAT
1 GAGCTGAGAATAGTAAACTCTTAT
*
74971805 GAGCTGAGAATAATAAACTCTTA
1 GAGCTGAGAATAGTAAACTCTTA
74971828 CGAGTTGATA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
24 39 0.98
25 1 0.03
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (24 bp):
GAGCTGAGAATAGTAAACTCTTAT
Found at i:74981841 original size:49 final size:49
Alignment explanation
Indices: 74981746--74981977 Score: 239
Period size: 49 Copynumber: 4.7 Consensus size: 49
74981736 TCTATTGTGA
* *
74981746 GGTCACGTGTGTAGTACTAAGTGCAGGCTATTACGTGTACCGGATAATC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATC
* * * **
74981795 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTTGATAACTTC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA--TC
* * * * * * ** *
74981846 GATCACGTGTGTGGTACTCAGTGCAGGCTACTACGTGTATCAGATGGTTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGAT-AATC
* * * *
74981896 GGTCACGTGTGTAGTACTAACTGCAGGCTACTACATGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATC
* *
74981945 GGTCGCATGTGTATTACTAAGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
74981978 TGCATACCAG
Statistics
Matches: 146, Mismatches: 34, Indels: 6
0.78 0.18 0.03
Matches are distributed among these distances:
49 70 0.48
50 39 0.27
51 37 0.25
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATC
Found at i:74982020 original size:150 final size:150
Alignment explanation
Indices: 74981745--74982023 Score: 382
Period size: 150 Copynumber: 1.9 Consensus size: 150
74981735 ATCTATTGTG
* * *
74981745 AGGTCACGTGTGTAGTACTAAGTGCAGGCTATTACGTGTACCGGATAATCGGTCGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAACTGCAGGCTACTACATGTACCGGATAATCGGTCGCATGTGTAGT
* ** ** ** *
74981810 ACTAAGTGCAGGCTACTATGCGTACTTGATAACTTCGATCACGTGTGTGGTACTCAGTGCAGGCT
66 ACTAAGTGCAGGCTACTATGCATACCAGATAACTTCGATCACAAGTGTGAAAATCAGTGCAGGCT
74981875 ACTACGTGTATCAGATGGTT
131 ACTACGTGTATCAGATGGTT
* *
74981895 AGGTCACGTGTGTAGTACTAACTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTATT
1 AGGTCACGTGTGTAGTACTAACTGCAGGCTACTACATGTACCGGATAATCGGTCGCATGTGTAGT
* * *
74981960 ACTAAGTGCAGGCTACTATGCATACCAGATAGCTTTG-GCTACAAGTGTGAAAAT-ATGTGCAGG
66 ACTAAGTGCAGGCTACTATGCATACCAGATAACTTCGATC-ACAAGTGTGAAAATCA-GTGCAGG
74982023 C
129 C
74982024 AACTGAGTAT
Statistics
Matches: 111, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
149 2 0.02
150 109 0.98
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (150 bp):
AGGTCACGTGTGTAGTACTAACTGCAGGCTACTACATGTACCGGATAATCGGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTATGCATACCAGATAACTTCGATCACAAGTGTGAAAATCAGTGCAGGCT
ACTACGTGTATCAGATGGTT
Found at i:74994369 original size:17 final size:17
Alignment explanation
Indices: 74994347--74994380 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
74994337 AAATAGATAG
74994347 TAATATGGTGAAATAAT
1 TAATATGGTGAAATAAT
74994364 TAATATGGTGAAATAAT
1 TAATATGGTGAAATAAT
74994381 GGAAATTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.18, T:0.35
Consensus pattern (17 bp):
TAATATGGTGAAATAAT
Found at i:74994938 original size:48 final size:48
Alignment explanation
Indices: 74994866--74995035 Score: 159
Period size: 48 Copynumber: 3.6 Consensus size: 48
74994856 ACATTACAAG
* *
74994866 AGCTAGTGTAAGACTTGTCTGGGACATGCATTGGCCCCGAGATATACC
1 AGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCCCGAGATATACA
* * **** ** *
74994914 AGCCAGTGTAAGACATGT-TCGGGACATGCATCGGCTTTAAGA-CGA-G
1 AGCTAGTGTAAGACATGTCT-GGGACATGCATTGGCCCCGAGATATACA
* * *
74994960 AGCTAATGTAAGACATGTTTGGGACATGCATTAGCCTCCG-GATATACA
1 AGCTAGTGTAAGACATGTCTGGGACATGCATTGGCC-CCGAGATATACA
*
74995008 AGCTAGTGTAAGACCTGTCTGGGACATG
1 AGCTAGTGTAAGACATGTCTGGGACATG
74995036 GCGTCAGCTT
Statistics
Matches: 93, Mismatches: 24, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
46 31 0.33
47 4 0.04
48 58 0.62
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (48 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCCCGAGATATACA
Found at i:74994962 original size:94 final size:94
Alignment explanation
Indices: 74994864--74995035 Score: 249
Period size: 94 Copynumber: 1.8 Consensus size: 94
74994854 CCACATTACA
* * * *
74994864 AGAGCTAGTGTAAGACTTGTCTGGGACATGCATTGGCC-CCGAGATATACCAGCCAGTGTAAGAC
1 AGAGCTAATGTAAGACATGTCTGGGACATGCATTAGCCTCCG-GATATACAAGCCAGTGTAAGAC
74994928 ATGT-TCGGGACATGCATCGGCTTTAAGACG
65 ATGTCT-GGGACATGCATCGGCTTTAAGACG
* * *
74994958 AGAGCTAATGTAAGACATGTTTGGGACATGCATTAGCCTCCGGATATACAAGCTAGTGTAAGACC
1 AGAGCTAATGTAAGACATGTCTGGGACATGCATTAGCCTCCGGATATACAAGCCAGTGTAAGACA
74995023 TGTCTGGGACATG
66 TGTCTGGGACATG
74995036 GCGTCAGCTT
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
94 65 0.94
95 4 0.06
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (94 bp):
AGAGCTAATGTAAGACATGTCTGGGACATGCATTAGCCTCCGGATATACAAGCCAGTGTAAGACA
TGTCTGGGACATGCATCGGCTTTAAGACG
Found at i:74995114 original size:49 final size:49
Alignment explanation
Indices: 74995055--74995180 Score: 173
Period size: 49 Copynumber: 2.6 Consensus size: 49
74995045 TCTTATGTGT
74995055 CAGTGTAAGACCTGTTTGGGACATGGCATCGGCAC-CAATAGATGAAAGC
1 CAGTGTAAGACCTGTTTGGGACATGGCATCGGC-CTCAATAGATGAAAGC
* * * * *
74995104 CAGTGTAAGACCTGTCTGTGACACGGCATCGGCCTCGATATATGAAAGC
1 CAGTGTAAGACCTGTTTGGGACATGGCATCGGCCTCAATAGATGAAAGC
*
74995153 CAGTGTAATACCATGTTTGGGACATGGC
1 CAGTGTAAGACC-TGTTTGGGACATGGC
74995181 GTCGACATCT
Statistics
Matches: 66, Mismatches: 9, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
48 1 0.02
49 53 0.80
50 12 0.18
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACCTGTTTGGGACATGGCATCGGCCTCAATAGATGAAAGC
Found at i:74996779 original size:28 final size:28
Alignment explanation
Indices: 74996739--74996807 Score: 120
Period size: 28 Copynumber: 2.5 Consensus size: 28
74996729 CAGGGGATAC
*
74996739 AACACGAGCGTGTCACGGCAGTGTGGGG
1 AACACGGGCGTGTCACGGCAGTGTGGGG
*
74996767 AACACGGGCGTGTCACGGCCGTGTGGGG
1 AACACGGGCGTGTCACGGCAGTGTGGGG
74996795 AACACGGGCGTGT
1 AACACGGGCGTGT
74996808 GCTCAGCCAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.19, C:0.23, G:0.43, T:0.14
Consensus pattern (28 bp):
AACACGGGCGTGTCACGGCAGTGTGGGG
Found at i:75001019 original size:27 final size:27
Alignment explanation
Indices: 75000989--75001386 Score: 282
Period size: 27 Copynumber: 14.7 Consensus size: 27
75000979 AGGTATTTTG
* * *
75000989 GTCATTTTACCCTGTGAGGGTAAA-ATC
1 GTCATTTTACCATATAAGGG-AAATATC
*
75001016 GTCATTTTATCATATAAGGGAAATATC
1 GTCATTTTACCATATAAGGGAAATATC
* * * *
75001043 GTCATTTTATCACATAAGGGCAATATT
1 GTCATTTTACCATATAAGGGAAATATC
* * *
75001070 GTCATTTTATCACATAAGGGCAATATC
1 GTCATTTTACCATATAAGGGAAATATC
* * *
75001097 GTCATTTTATCACATAAGGGCAATATC
1 GTCATTTTACCATATAAGGGAAATATC
* *
75001124 GTCATTTTATC-TCATAAGGGCAATATC
1 GTCATTTTACCAT-ATAAGGGAAATATC
* * *
75001151 ATCATTTTATC-TCATAAGGGCAATATC
1 GTCATTTTACCAT-ATAAGGGAAATATC
* * * *
75001178 ATCATTTTATCACATAAGGGCAATATC
1 GTCATTTTACCATATAAGGGAAATATC
* * * *
75001205 ATCATTTTATCACATAAGGGAAATATT
1 GTCATTTTACCATATAAGGGAAATATC
* * * *
75001232 GTCGTTTTATCACATAAGGGCAATATC
1 GTCATTTTACCATATAAGGGAAATATC
* * * *
75001259 ATCATTTTATCACATAAGGGCAATATC
1 GTCATTTTACCATATAAGGGAAATATC
* * * * *
75001286 ATCATTTTATCACATAAAGGCAATATC
1 GTCATTTTACCATATAAGGGAAATATC
* * * * *
75001313 ATTATTTTATCACAAAAGGGCAAA-ATC
1 GTCATTTTACCATATAAGGG-AAATATC
* * *
75001340 GTCATTTTATCACATAAGGGAAAAATC
1 GTCATTTTACCATATAAGGGAAATATC
* *
75001367 GTCATTTTATCACATAAGGG
1 GTCATTTTACCATATAAGGG
75001387 TTCAAGTACG
Statistics
Matches: 339, Mismatches: 27, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
26 6 0.02
27 331 0.98
28 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCATATAAGGGAAATATC
Found at i:75001047 original size:54 final size:54
Alignment explanation
Indices: 75001013--75001386 Score: 577
Period size: 54 Copynumber: 6.9 Consensus size: 54
75001003 TGAGGGTAAA
* * *
75001013 ATCGTCATTTTATCATATAAGGGAAATATCGTCATTTTATCACATAAGGGCAAT
1 ATCGTCATTTTATCACATAAGGGCAATATCATCATTTTATCACATAAGGGCAAT
* *
75001067 ATTGTCATTTTATCACATAAGGGCAATATCGTCATTTTATCACATAAGGGCAAT
1 ATCGTCATTTTATCACATAAGGGCAATATCATCATTTTATCACATAAGGGCAAT
* *
75001121 ATCGTCATTTTATCTCATAAGGGCAATATCATCATTTTATCTCATAAGGGCAAT
1 ATCGTCATTTTATCACATAAGGGCAATATCATCATTTTATCACATAAGGGCAAT
* *
75001175 ATCATCATTTTATCACATAAGGGCAATATCATCATTTTATCACATAAGGGAAAT
1 ATCGTCATTTTATCACATAAGGGCAATATCATCATTTTATCACATAAGGGCAAT
* *
75001229 ATTGTCGTTTTATCACATAAGGGCAATATCATCATTTTATCACATAAGGGCAAT
1 ATCGTCATTTTATCACATAAGGGCAATATCATCATTTTATCACATAAGGGCAAT
* * * * *
75001283 ATCATCATTTTATCACATAAAGGCAATATCATTATTTTATCACAAAAGGGCAAA
1 ATCGTCATTTTATCACATAAGGGCAATATCATCATTTTATCACATAAGGGCAAT
* * *
75001337 ATCGTCATTTTATCACATAAGGGAAAAATCGTCATTTTATCACATAAGGG
1 ATCGTCATTTTATCACATAAGGGCAATATCATCATTTTATCACATAAGGG
75001387 TTCAAGTACG
Statistics
Matches: 291, Mismatches: 29, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 291 1.00
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (54 bp):
ATCGTCATTTTATCACATAAGGGCAATATCATCATTTTATCACATAAGGGCAAT
Found at i:75001074 original size:81 final size:81
Alignment explanation
Indices: 75001013--75001386 Score: 568
Period size: 81 Copynumber: 4.6 Consensus size: 81
75001003 TGAGGGTAAA
* * *
75001013 ATCGTCATTTTATCATATAAGGGAAATATCGTCATTTTATCACATAAGGGCAATATTGTCATTTT
1 ATCGTCATTTTATCACATAAGGGCAATATCGTCATTTTATCACATAAGGGCAATATCGTCATTTT
75001078 ATCACATAAGGGCAAT
66 ATCACATAAGGGCAAT
* *
75001094 ATCGTCATTTTATCACATAAGGGCAATATCGTCATTTTATCTCATAAGGGCAATATCATCATTTT
1 ATCGTCATTTTATCACATAAGGGCAATATCGTCATTTTATCACATAAGGGCAATATCGTCATTTT
*
75001159 ATCTCATAAGGGCAAT
66 ATCACATAAGGGCAAT
* * * * *
75001175 ATCATCATTTTATCACATAAGGGCAATATCATCATTTTATCACATAAGGGAAATATTGTCGTTTT
1 ATCGTCATTTTATCACATAAGGGCAATATCGTCATTTTATCACATAAGGGCAATATCGTCATTTT
75001240 ATCACATAAGGGCAAT
66 ATCACATAAGGGCAAT
* * * * *
75001256 ATCATCATTTTATCACATAAGGGCAATATCATCATTTTATCACATAAAGGCAATATCATTATTTT
1 ATCGTCATTTTATCACATAAGGGCAATATCGTCATTTTATCACATAAGGGCAATATCGTCATTTT
* *
75001321 ATCACAAAAGGGCAAA
66 ATCACATAAGGGCAAT
* *
75001337 ATCGTCATTTTATCACATAAGGGAAAAATCGTCATTTTATCACATAAGGG
1 ATCGTCATTTTATCACATAAGGGCAATATCGTCATTTTATCACATAAGGG
75001387 TTCAAGTACG
Statistics
Matches: 266, Mismatches: 27, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 266 1.00
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (81 bp):
ATCGTCATTTTATCACATAAGGGCAATATCGTCATTTTATCACATAAGGGCAATATCGTCATTTT
ATCACATAAGGGCAAT
Found at i:75006573 original size:46 final size:46
Alignment explanation
Indices: 75006412--75006579 Score: 167
Period size: 46 Copynumber: 3.6 Consensus size: 46
75006402 TACGTGTGTC
* * * * *
75006412 AGTGTAAGACATGTCTAGGACATGCATTGACCAC-ATTACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGAGAGCT
* ** * *
75006458 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATATACCAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA-CGA-GAGCT
* * * *
75006506 AGTGTAAGACATGCCTGGGACATGTATCGGCTTTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGAGAGCT
*
75006552 AGTGTAAGACATGTCTCGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
75006580 AACCTCAGGA
Statistics
Matches: 99, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
46 60 0.61
47 3 0.03
48 36 0.36
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGAGAGCT
Found at i:75006573 original size:94 final size:94
Alignment explanation
Indices: 75006449--75006623 Score: 253
Period size: 94 Copynumber: 1.9 Consensus size: 94
75006439 TGACCACATT
* *** *
75006449 ACGAGAGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTC-GAGATATACCAGCCAGTGTAA
1 ACGAGAGCTAGTGTAAGACATGTCTCGGACATGCATCAACCTCAG-GATATACAAGCCAGTGTAA
*
75006513 GACATGCCTGGGACATGTATCGGCTTTGAG
65 GACATACCTGGGACATGTATCGGCTTTGAG
*
75006543 ACGAGAGCTAGTGTAAGACATGTCTCGGACATGCATCAACCTCAGGATATACAAGCTAGTGTAAG
1 ACGAGAGCTAGTGTAAGACATGTCTCGGACATGCATCAACCTCAGGATATACAAGCCAGTGTAAG
* *
75006608 ACTTATCTGGGACATG
66 ACATACCTGGGACATG
75006624 GAGTCAGCTT
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
94 70 0.99
95 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.23
Consensus pattern (94 bp):
ACGAGAGCTAGTGTAAGACATGTCTCGGACATGCATCAACCTCAGGATATACAAGCCAGTGTAAG
ACATACCTGGGACATGTATCGGCTTTGAG
Found at i:75012549 original size:31 final size:31
Alignment explanation
Indices: 75012514--75012573 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
75012504 AAATGGGCTC
* *
75012514 ACACGCCCATGTGGCCTATCCATGTGGGCCA
1 ACACGCCCATGTGGCCTACCCATGCGGGCCA
*
75012545 ACACGCCCATGTGGGCTACCCATGCGGGC
1 ACACGCCCATGTGGCCTACCCATGCGGGC
75012574 TCACATGCCC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.18, C:0.37, G:0.28, T:0.17
Consensus pattern (31 bp):
ACACGCCCATGTGGCCTACCCATGCGGGCCA
Found at i:75014157 original size:19 final size:19
Alignment explanation
Indices: 75014135--75014198 Score: 60
Period size: 19 Copynumber: 3.3 Consensus size: 19
75014125 AATTCATTTG
75014135 ATAACAGTATCTCATCCAT
1 ATAACAGTATCTCATCCAT
* *
75014154 ATAAATAGTA-CTTTATCCAT
1 AT-AACAGTATC-TCATCCAT
75014174 ATAACAGTAAT-TCATCCAT
1 ATAACAGT-ATCTCATCCAT
*
75014193 GTAACA
1 ATAACA
75014199 CATAGCTTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
19 20 0.56
20 16 0.44
ACGTcount: A:0.41, C:0.20, G:0.06, T:0.33
Consensus pattern (19 bp):
ATAACAGTATCTCATCCAT
Found at i:75014408 original size:24 final size:24
Alignment explanation
Indices: 75014390--75014436 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
75014380 TTGAGTTGGA
75014390 AACAGAAAGCTCTGATGAGCTGAG
1 AACAGAAAGCTCTGATGAGCTGAG
* * *
75014414 AACAGTAAGCTCTTACGAGCTGA
1 AACAGAAAGCTCTGATGAGCTGA
75014437 TACATCGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.36, C:0.19, G:0.26, T:0.19
Consensus pattern (24 bp):
AACAGAAAGCTCTGATGAGCTGAG
Found at i:75016327 original size:41 final size:43
Alignment explanation
Indices: 75016239--75016362 Score: 121
Period size: 41 Copynumber: 2.9 Consensus size: 43
75016229 TCCCATACGT
* * *
75016239 GGTCTTACATGCT-ATCTCATATCGATGCCACTGTC-CTAGACAG
1 GGTCTTACACG-TAATCTCATATCGATGCCAATGTCTC-AAACAG
* *
75016282 GGTCTTACTCG-AATCTCATA-CGATGCCAATGTCTCAAACAT
1 GGTCTTACACGTAATCTCATATCGATGCCAATGTCTCAAACAG
* *
75016323 GGTCTTACACGTAACCACATATATCGATGCCAATGTCTCA
1 GGTCTTACACGTAATCTC--ATATCGATGCCAATGTCTCA
75016363 GACGTGCTCC
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
41 26 0.39
42 13 0.19
43 9 0.13
44 3 0.04
45 16 0.24
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (43 bp):
GGTCTTACACGTAATCTCATATCGATGCCAATGTCTCAAACAG
Found at i:75016354 original size:45 final size:45
Alignment explanation
Indices: 75016302--75016400 Score: 144
Period size: 45 Copynumber: 2.2 Consensus size: 45
75016292 GAATCTCATA
* * * *
75016302 CGATGCCAATGTCTCAAACATGGTCTTACACGTAACCACATATAT
1 CGATGCCAATGTCTCAAACATGCTCCTACACGAAAACACATATAT
* *
75016347 CGATGCCAATGTCTCAGACGTGCTCCTACACGAAAACACATATAT
1 CGATGCCAATGTCTCAAACATGCTCCTACACGAAAACACATATAT
75016392 CGATGCCAA
1 CGATGCCAA
75016401 CGTCCCAGAC
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.23
Consensus pattern (45 bp):
CGATGCCAATGTCTCAAACATGCTCCTACACGAAAACACATATAT
Found at i:75020712 original size:27 final size:26
Alignment explanation
Indices: 75020677--75020788 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
75020667 AGCATGGCTG
* *
75020677 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
75020703 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
75020731 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
75020758 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
75020785 CCAG
1 CCAG
75020789 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 54 0.71
28 16 0.21
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:75020741 original size:54 final size:54
Alignment explanation
Indices: 75020677--75020788 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
75020667 AGCATGGCTG
*
75020677 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAACCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAACCA
* * * *
75020731 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAACCA
75020785 CCAG
1 CCAG
75020789 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAACCA
Found at i:75022232 original size:24 final size:24
Alignment explanation
Indices: 75022205--75022251 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
75022195 CTAGATTTCC
**
75022205 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
75022229 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
75022252 CTCCTGACAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.38, G:0.02, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:75027803 original size:24 final size:26
Alignment explanation
Indices: 75027748--75027850 Score: 106
Period size: 25 Copynumber: 4.1 Consensus size: 26
75027738 GTGTAAAATA
*
75027748 AAATGGTTATACGTAATGGTTATATG
1 AAATGGTTATACGAAATGGTTATATG
*
75027774 AAATGGTTACACGAAATGG-TA-ATG
1 AAATGGTTATACGAAATGGTTATATG
* * *
75027798 AGATGGCTATACGAAATAGTTATAT-
1 AAATGGTTATACGAAATGGTTATATG
* *
75027823 AAATGAG-TATATGAAATGATTATATG
1 AAATG-GTTATACGAAATGGTTATATG
75027849 AA
1 AA
75027851 TCAGTTAAAT
Statistics
Matches: 63, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
24 18 0.29
25 23 0.37
26 22 0.35
ACGTcount: A:0.42, C:0.05, G:0.21, T:0.32
Consensus pattern (26 bp):
AAATGGTTATACGAAATGGTTATATG
Found at i:75027839 original size:13 final size:13
Alignment explanation
Indices: 75027748--75027850 Score: 88
Period size: 13 Copynumber: 8.2 Consensus size: 13
75027738 GTGTAAAATA
*
75027748 AAATGGTTATACG
1 AAATGGTTATATG
*
75027761 TAATGGTTATATG
1 AAATGGTTATATG
* *
75027774 AAATGGTTACACG
1 AAATGGTTATATG
75027787 AAATGG-TA-ATG
1 AAATGGTTATATG
* * *
75027798 AGATGGCTATACG
1 AAATGGTTATATG
*
75027811 AAATAGTTATAT-
1 AAATGGTTATATG
75027823 AAATGAG-TATATG
1 AAATG-GTTATATG
*
75027836 AAATGATTATATG
1 AAATGGTTATATG
75027849 AA
1 AA
75027851 TCAGTTAAAT
Statistics
Matches: 71, Mismatches: 14, Indels: 10
0.75 0.15 0.11
Matches are distributed among these distances:
11 7 0.10
12 13 0.18
13 51 0.72
ACGTcount: A:0.42, C:0.05, G:0.21, T:0.32
Consensus pattern (13 bp):
AAATGGTTATATG
Found at i:75027839 original size:25 final size:26
Alignment explanation
Indices: 75027805--75027874 Score: 63
Period size: 25 Copynumber: 2.7 Consensus size: 26
75027795 ATGAGATGGC
* *
75027805 TATACGAAATAGTTATATAAATGAG-
1 TATATGAAATAGTTATATAAATCAGT
*
75027830 TATATGAAAT-GATTATATGAATCAGT
1 TATATGAAATAG-TTATATAAATCAGT
* *
75027856 TAAATGGAAATATTTATAT
1 TATAT-GAAATAGTTATAT
75027875 GAAGTAATTA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
24 1 0.03
25 20 0.56
26 4 0.11
27 11 0.31
ACGTcount: A:0.46, C:0.03, G:0.14, T:0.37
Consensus pattern (26 bp):
TATATGAAATAGTTATATAAATCAGT
Found at i:75028579 original size:23 final size:22
Alignment explanation
Indices: 75028536--75028580 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
75028526 TTATGCATTA
*
75028536 CTGATATTGTACTGGATTGGGC
1 CTGATATTGTACTGGAATGGGC
75028558 CTGATATTGCTACT-GACATGGGC
1 CTGATATTG-TACTGGA-ATGGGC
75028581 TTAAGCCCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.20, C:0.18, G:0.29, T:0.33
Consensus pattern (22 bp):
CTGATATTGTACTGGAATGGGC
Found at i:75032822 original size:49 final size:47
Alignment explanation
Indices: 75032762--75033215 Score: 705
Period size: 47 Copynumber: 9.6 Consensus size: 47
75032752 GATAATTGTG
* * *
75032762 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75032809 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75032856 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75032905 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75032954 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75033003 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
75033050 ATGTGAAAGTGTATATATGTGATGAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75033097 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGA-GTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
75033143 ATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGATGTGATGA
*
75033190 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
75033216 TCCCGAAGGG
Statistics
Matches: 387, Mismatches: 15, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
45 2 0.01
46 39 0.10
47 200 0.52
48 2 0.01
49 144 0.37
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:75032869 original size:96 final size:96
Alignment explanation
Indices: 75032762--75033215 Score: 717
Period size: 96 Copynumber: 4.8 Consensus size: 96
75032752 GATAATTGTG
*
75032762 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
75032825 ATGTGATAAGGCCGAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
75032856 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
75032921 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
75032954 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
75033019 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
75033050 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
75033113 ATGTGATGAGGCCTAATGGCCGA-GTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
75033143 ATGTGAAAGTG--TATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 ATGTGAAAGTGTATATATATGTGATAAG-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
75033205 AATGTGATAAG
65 TATGTGATAAG
75033216 TCCCGAAGGG
Statistics
Matches: 341, Mismatches: 14, Indels: 11
0.93 0.04 0.03
Matches are distributed among these distances:
92 2 0.01
93 68 0.20
94 77 0.23
95 2 0.01
96 97 0.28
98 95 0.28
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:75038957 original size:53 final size:53
Alignment explanation
Indices: 75038774--75039028 Score: 252
Period size: 55 Copynumber: 4.8 Consensus size: 53
75038764 ATTAGGGTTT
*
75038774 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCATAAGGC
* * * * *
75038829 GAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * *
75038884 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* * * *
75038937 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT-TTAA--A
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* * * * *
75038987 AAGGATACCA-CTAGGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
75039029 GTTCCCGCAT
Statistics
Matches: 170, Mismatches: 25, Indels: 16
0.81 0.12 0.08
Matches are distributed among these distances:
49 28 0.16
50 10 0.06
52 9 0.05
53 44 0.26
54 8 0.05
55 68 0.40
56 3 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:75038980 original size:108 final size:110
Alignment explanation
Indices: 75038781--75038981 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
75038771 TTTAAGGATA
* *
75038781 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCGAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
75038846 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
75038891 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
75038953 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
75038982 TTAAAAAGGA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.56
109 7 0.08
110 27 0.32
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:75042451 original size:40 final size:40
Alignment explanation
Indices: 75042392--75042579 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
75042382 TCGAATGATG
75042392 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
* * *
75042432 TCCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTACA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACTATA
* ** * * *
75042475 CCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
* ** *
75042515 TCCGGGCTAAGACCCGAAGGCATTTGTGTGAGTTCCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
* *
75042555 TCC-GGCTAAATCCCGAAGACATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
75042580 GGTTTGGAAG
Statistics
Matches: 121, Mismatches: 24, Indels: 7
0.80 0.16 0.05
Matches are distributed among these distances:
39 19 0.16
40 68 0.56
41 1 0.01
43 33 0.27
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
Found at i:75042532 original size:83 final size:83
Alignment explanation
Indices: 75042393--75042547 Score: 238
Period size: 83 Copynumber: 1.9 Consensus size: 83
75042383 CGAATGATGT
** * * *
75042393 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCAGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCATGCAAGTGACCATATCCAGGCTAAGACCCGAAGGCATTTG
75042458 TGCGAGTAGTTGCTACAC
66 TGCGAGTAGTTGCTACAC
* *
75042476 CCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACCATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCATGCAAGTGACCATATCCAGGCTAAGACCCGAAGGCATTTG
*
75042541 TGTGAGT
66 TGCGAGT
75042548 TCCTATATCC
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
83 64 1.00
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.24
Consensus pattern (83 bp):
CCGGGCTAAGTCCCGAAGGCATTCATGCAAGTGACCATATCCAGGCTAAGACCCGAAGGCATTTG
TGCGAGTAGTTGCTACAC
Found at i:75050520 original size:40 final size:40
Alignment explanation
Indices: 75050462--75050689 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
75050452 TCGGATGATG
*
75050462 TCCGGGCTAAGTCTCGAAGGCATTTGTGCAAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
* *
75050502 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACTATA
* * *
75050545 CCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
** * *
75050585 TCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
* * *
75050625 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
* *
75050665 TCC-GGCTAAATCCCGAAGACATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
75050690 GGTTTGGAAG
Statistics
Matches: 165, Mismatches: 20, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 19 0.12
40 109 0.66
41 1 0.01
43 36 0.22
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
Found at i:75050602 original size:83 final size:80
Alignment explanation
Indices: 75050463--75050689 Score: 289
Period size: 83 Copynumber: 2.8 Consensus size: 80
75050453 CGGATGATGT
* * *
75050463 CCGGGCTAAGTCTCGAAGGCATTTGTGCAAGTTACTATATCCGGGATAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
75050528 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
* **
75050546 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
75050611 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * * *
75050626 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAGACATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAGGCATTT
75050689 G
65 G
75050690 GGTTTGGAAG
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
79 20 0.16
80 45 0.35
81 2 0.02
83 62 0.48
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCTAGTGACTATAC
Found at i:75057904 original size:55 final size:54
Alignment explanation
Indices: 75057836--75058091 Score: 260
Period size: 55 Copynumber: 4.8 Consensus size: 54
75057826 ATTACGGTTT
*
75057836 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * * *
75057891 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
75057946 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* * *
75057999 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTACGTTT-TAA--A
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * * *
75058049 AAGGATACCACGTAAGACCATGACAAGTCATGACAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
75058092 GTACCCGCGT
Statistics
Matches: 169, Mismatches: 25, Indels: 19
0.79 0.12 0.09
Matches are distributed among these distances:
50 38 0.22
52 8 0.05
53 40 0.24
54 11 0.07
55 68 0.40
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:75060118 original size:3 final size:3
Alignment explanation
Indices: 75060106--75060216 Score: 61
Period size: 3 Copynumber: 35.7 Consensus size: 3
75060096 TAATATGATT
* **
75060106 TTA TTA -TA TTA TTA TATA TTA TATA TTA TTT TTCA CAAA TTA TTA TTA
1 TTA TTA TTA TTA TTA T-TA TTA T-TA TTA TTA TT-A -TTA TTA TTA TTA
* *
75060154 TT- TTA -CA TTA TTA TTT TTA -TA TTA TTA TTA -TA TTA TATA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA -TTA
75060197 TTAA TTA TTTA TATA TTA TT
1 TT-A TTA -TTA T-TA TTA TT
75060217 CTTACATAAT
Statistics
Matches: 84, Mismatches: 10, Indels: 28
0.69 0.08 0.23
Matches are distributed among these distances:
2 9 0.11
3 54 0.64
4 20 0.24
5 1 0.01
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:75060178 original size:11 final size:11
Alignment explanation
Indices: 75060162--75060216 Score: 56
Period size: 11 Copynumber: 4.6 Consensus size: 11
75060152 TATTTTACAT
75060162 TATTATTTTTA
1 TATTATTTTTA
*
75060173 TATTATTATTA
1 TATTATTTTTA
75060184 TATTATATATTTA
1 TATTAT-T-TTTA
*
75060197 TTAATTATTTATA
1 -T-ATTATTTTTA
75060210 TATTATT
1 TATTATT
75060217 CTTACATAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
11 22 0.59
12 2 0.05
13 6 0.16
14 2 0.05
15 5 0.14
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TATTATTTTTA
Found at i:75060461 original size:15 final size:15
Alignment explanation
Indices: 75060443--75060493 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
75060433 TAATTATTTA
75060443 TTTATTATGTATTAT
1 TTTATTATGTATTAT
**
75060458 TTTAAAATGATATT-T
1 TTTATTATG-TATTAT
*
75060473 TTATATTATGTGTTAT
1 TT-TATTATGTATTAT
75060489 TTTAT
1 TTTAT
75060494 AAATTCTTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
15 16 0.57
16 12 0.43
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (15 bp):
TTTATTATGTATTAT
Found at i:75060480 original size:31 final size:32
Alignment explanation
Indices: 75060437--75060497 Score: 90
Period size: 31 Copynumber: 1.9 Consensus size: 32
75060427 AATTATTAAT
75060437 TATTTATTTATTATGTATTATTTTA-AAATGA
1 TATTTATTTATTATGTATTATTTTATAAATGA
*
75060468 TATTT-TTATATTATGTGTTATTTTATAAAT
1 TATTTATT-TATTATGTATTATTTTATAAAT
75060498 TCTTTTACAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 2 0.07
31 21 0.78
32 4 0.15
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.61
Consensus pattern (32 bp):
TATTTATTTATTATGTATTATTTTATAAATGA
Found at i:75060843 original size:33 final size:35
Alignment explanation
Indices: 75060782--75060853 Score: 96
Period size: 33 Copynumber: 2.1 Consensus size: 35
75060772 ATTGATATTG
*
75060782 TATTACTCTTTTTTGTATGTCATGCATTATGTAAAT
1 TATTACTCTTTTTTGTATATCATGCATTAT-TAAAT
*
75060818 TATTAC-C-TTTTT-TATATCATGCATTATTTAAT
1 TATTACTCTTTTTTGTATATCATGCATTATTAAAT
75060850 TATT
1 TATT
75060854 GCTTTGTATG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
32 8 0.24
33 14 0.41
34 5 0.15
35 1 0.03
36 6 0.18
ACGTcount: A:0.26, C:0.11, G:0.07, T:0.56
Consensus pattern (35 bp):
TATTACTCTTTTTTGTATATCATGCATTATTAAAT
Found at i:75065422 original size:104 final size:104
Alignment explanation
Indices: 75065242--75065465 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
75065232 TGTATATAAA
** * *
75065242 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
75065307 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
75065346 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
75065410 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
75065450 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
75065466 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:75065517 original size:71 final size:72
Alignment explanation
Indices: 75065384--75065535 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
75065374 TCATTGGTGG
* *
75065384 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
75065449 GAGGGGT
66 GAGGGGT
***
75065456 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
75065520 GAGGGGT
66 GAGGGGT
75065527 TGCTAAGTG
1 TGCTAAGTG
75065536 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:75072452 original size:26 final size:26
Alignment explanation
Indices: 75072417--75072467 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
75072407 AATGTGAAAG
*
75072417 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
75072443 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
75072468 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:75072479 original size:103 final size:104
Alignment explanation
Indices: 75072339--75072561 Score: 369
Period size: 103 Copynumber: 2.2 Consensus size: 104
75072329 TGTATATAAA
** * *
75072339 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
75072403 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
75072442 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTT
75072507 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
75072546 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
75072562 GATATCCATT
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 90 0.80
104 22 0.20
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:75072613 original size:71 final size:72
Alignment explanation
Indices: 75072480--75072631 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
75072470 TCATTGGTGG
* *
75072480 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
75072545 GAGGGGT
66 GAGGGGT
***
75072552 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
75072616 GAGGGGT
66 GAGGGGT
75072623 TGCTAAGTG
1 TGCTAAGTG
75072632 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:75080552 original size:24 final size:24
Alignment explanation
Indices: 75080524--75080570 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
75080514 CCCAAAATTT
* *
75080524 AATTTTTTTAATTAATAATTTTTC
1 AATTTATTGAATTAATAATTTTTC
**
75080548 AATTTATTGAATTGTTAATTTTT
1 AATTTATTGAATTAATAATTTTT
75080571 TATTTCTAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (24 bp):
AATTTATTGAATTAATAATTTTTC
Found at i:75085118 original size:38 final size:38
Alignment explanation
Indices: 75085076--75085366 Score: 136
Period size: 38 Copynumber: 6.9 Consensus size: 38
75085066 CTTCAAATTA
*
75085076 ACATGTATAATCGTGGCATATCCACTTAGCACCATGTT
1 ACATGTATAATCGTGGCATATCCACTTAGCACCACGTT
* * * * *
75085114 ACATGTTTAACCATGGTATATCCACTTAGCATCACGTT
1 ACATGTATAATCGTGGCATATCCACTTAGCACCACGTT
* *
75085152 A-ATGAATCAATATATGTAACCGTGGCATATCCACTTAACACCATGTT
1 ACATG--T--ATA-A--T---CGTGGCATATCCACTTAGCACCACGTT
* * * *
75085199 ACATGTTTAACCATGGTATATCCACTTAGCACCACGTT
1 ACATGTATAATCGTGGCATATCCACTTAGCACCACGTT
75085237 A-ATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATG--T--ATA-A--T---CGTGGCATATCCACTTAGCACCACGTT
*
75085284 ACATGTATCAATATGTGTAATCGTGGTATATCCACTTAGCACCACGTT
1 ACATG------TA----TAATCGTGGCATATCCACTTAGCACCACGTT
* ** * *
75085332 ATACATATAACCGTGGTATATCCACTTAGCACCAC
1 ACATGTATAATCGTGGCATATCCACTTAGCACCAC
75085367 ATTTTTTCAT
Statistics
Matches: 195, Mismatches: 28, Indels: 60
0.69 0.10 0.21
Matches are distributed among these distances:
37 6 0.03
38 84 0.43
39 2 0.01
41 4 0.02
42 4 0.02
43 1 0.01
44 2 0.01
46 1 0.01
47 49 0.25
48 34 0.17
50 1 0.01
51 1 0.01
52 3 0.02
53 1 0.01
54 2 0.01
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.31
Consensus pattern (38 bp):
ACATGTATAATCGTGGCATATCCACTTAGCACCACGTT
Found at i:75085180 original size:85 final size:85
Alignment explanation
Indices: 75085087--75085289 Score: 379
Period size: 85 Copynumber: 2.4 Consensus size: 85
75085077 CATGTATAAT
*
75085087 CGTGGCATATCCACTTAGCACCATGTTACATGTTTAACCATGGTATATCCACTTAGCATCACGTT
1 CGTGGCATATCCACTTAGCACCATGTTACATGTTTAACCATGGTATATCCACTTAGCACCACGTT
75085152 AATGAATCAATATATGTAAC
66 AATGAATCAATATATGTAAC
*
75085172 CGTGGCATATCCACTTAACACCATGTTACATGTTTAACCATGGTATATCCACTTAGCACCACGTT
1 CGTGGCATATCCACTTAGCACCATGTTACATGTTTAACCATGGTATATCCACTTAGCACCACGTT
75085237 AATGAATCAATATATGTAAC
66 AATGAATCAATATATGTAAC
*
75085257 CGTGGCATATCCACTTAGCACCACGTTACATGT
1 CGTGGCATATCCACTTAGCACCATGTTACATGT
75085290 ATCAATATGT
Statistics
Matches: 114, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 114 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (85 bp):
CGTGGCATATCCACTTAGCACCATGTTACATGTTTAACCATGGTATATCCACTTAGCACCACGTT
AATGAATCAATATATGTAAC
Found at i:75085315 original size:48 final size:47
Alignment explanation
Indices: 75085206--75085366 Score: 205
Period size: 48 Copynumber: 3.6 Consensus size: 47
75085196 GTTACATGTT
*
75085206 TAACCATGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * *
75085253 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
*
75085301 TAATCGTGGTATATCCACTTAGCACCACGTT-AT--A-C---ATA--
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
75085339 TAACCGTGGTATATCCACTTAGCACCAC
1 TAACCGTGGTATATCCACTTAGCACCAC
75085367 ATTTTTTCAT
Statistics
Matches: 105, Mismatches: 8, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
38 27 0.26
40 2 0.02
43 1 0.01
44 1 0.01
46 2 0.02
47 30 0.29
48 42 0.40
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (47 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:75085327 original size:133 final size:132
Alignment explanation
Indices: 75085121--75085366 Score: 357
Period size: 133 Copynumber: 1.9 Consensus size: 132
75085111 GTTACATGTT
* *
75085121 TAACCATGGTATATCCACTTAGCATCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
1 TAACCATGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
* ** *
75085186 TTAACACCATGTTACATGTTTAACCATGGTATATCCACTTAGCACCACGTTAATGAATCAATATA
66 TTAACACCACGTTACACATATAACCATGGTATATCCACTTAGCACCACGTTAATGAATCAATATA
75085251 TG
131 TG
* * * * *
75085253 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGTATATCCA
1 TAACCATGGCATATCCACTTAGCACCACGTTA-ATGAATCAATATATGTAACCGTGGCATATCCA
* * *
75085318 CTTAGCACCACGTTATACATATAACCGTGGTATATCCACTTAGCACCAC
65 CTTAACACCACGTTACACATATAACCATGGTATATCCACTTAGCACCAC
75085367 ATTTTTTCAT
Statistics
Matches: 99, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
132 29 0.29
133 70 0.71
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (132 bp):
TAACCATGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
TTAACACCACGTTACACATATAACCATGGTATATCCACTTAGCACCACGTTAATGAATCAATATA
TG
Found at i:75086413 original size:49 final size:49
Alignment explanation
Indices: 75086360--75086584 Score: 254
Period size: 49 Copynumber: 4.5 Consensus size: 49
75086350 CTGGTACGCA
* *
75086360 TAGTAGCCTGCAGTTAGTAATACACATGCAACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACACG
* * ** ** ***
75086409 TAGTAGCCTGTACTTAGTACTACACACGTGACCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCAACC-AATTATCCGGTACACG
* * * * *
75086459 TAGTAGCCTGCACTTAGTACTACACACGTG-ATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACA--TGCAACCAA-TTATCCGGTACACG
*
75086510 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACACG
75086559 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
75086585 CGTGACCTCA
Statistics
Matches: 142, Mismatches: 29, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
49 66 0.46
50 41 0.29
51 34 0.24
52 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACACG
Found at i:75086587 original size:100 final size:100
Alignment explanation
Indices: 75086360--75086589 Score: 286
Period size: 100 Copynumber: 2.3 Consensus size: 100
75086350 CTGGTACGCA
* * * *
75086360 TAGTAGCCTGCAGTTAGTAATACACA--TGCAACCAATTATCCGGTACACGTAGTAGCCTGTACT
1 TAGTAGCCTGCACTTAGTACTACACACGTG-AACCAATTATCCGGTACACATAGTAGCCTGCACT
* *
75086423 TAGTACTACACACGTGACCTAACCATCTAATACACG
65 TAGTACTACACACGCGACCTAACCATCCAATACACG
* * * *
75086459 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGAACCAA-TTATCCGGTACACATAGTAGCCTGCACT
* ** **
75086524 TAGTACTACACATGCGACC-AATTATCCGGTACACG
65 TAGTACTACACACGCGACCTAACCATCCAATACACG
75086559 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
75086590 CCTCACAATA
Statistics
Matches: 113, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
99 24 0.21
100 46 0.41
101 43 0.38
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGAACCAATTATCCGGTACACATAGTAGCCTGCACTT
AGTACTACACACGCGACCTAACCATCCAATACACG
Found at i:75092550 original size:30 final size:30
Alignment explanation
Indices: 75092484--75092574 Score: 92
Period size: 30 Copynumber: 2.9 Consensus size: 30
75092474 GTTGAAATTA
*
75092484 TTGATATAACTCTGATTGAATTGCATGGAATTTT
1 TTGAAATAA-TCTGATTGAATTGCAT-G--TTTT
* *
75092518 TTGAAATAATTTGATTAAATTGCATGTTTT
1 TTGAAATAATCTGATTGAATTGCATGTTTT
* * *
75092548 TTGGAATGATCTGGTTGAATTGCATGT
1 TTGAAATAATCTGATTGAATTGCATGT
75092575 GGGATAGGAA
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
30 26 0.53
32 1 0.02
33 14 0.29
34 8 0.16
ACGTcount: A:0.29, C:0.07, G:0.20, T:0.45
Consensus pattern (30 bp):
TTGAAATAATCTGATTGAATTGCATGTTTT
Found at i:75098062 original size:16 final size:16
Alignment explanation
Indices: 75098007--75098067 Score: 52
Period size: 16 Copynumber: 3.8 Consensus size: 16
75097997 TTTTAATAAG
75098007 ATTTAATATTAAATTA
1 ATTTAATATTAAATTA
* ** *
75098023 ATCTAATATTTATCTTG
1 ATTTAATA-TTAAATTA
* *
75098040 A-TAAATATTAGATTA
1 ATTTAATATTAAATTA
75098055 ATTTAATATTAAA
1 ATTTAATATTAAA
75098068 GTGATTAAGT
Statistics
Matches: 32, Mismatches: 11, Indels: 4
0.68 0.23 0.09
Matches are distributed among these distances:
15 6 0.19
16 20 0.62
17 6 0.19
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (16 bp):
ATTTAATATTAAATTA
Found at i:75100103 original size:43 final size:43
Alignment explanation
Indices: 75100055--75100252 Score: 333
Period size: 43 Copynumber: 4.6 Consensus size: 43
75100045 CCGGCATTAC
*
75100055 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
75100098 GCCTGCTAGGCATGAAGGCCCGAATACACATCACCGACACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
75100141 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGTACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
75100184 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
75100227 GCCTGCTAGGCACAAAGGCCCAAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
75100253 TAATACCAGC
Statistics
Matches: 145, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 145 1.00
ACGTcount: A:0.32, C:0.33, G:0.24, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:75100301 original size:38 final size:38
Alignment explanation
Indices: 75100250--75100390 Score: 219
Period size: 38 Copynumber: 3.7 Consensus size: 38
75100240 AAAGGCCCAA
* *
75100250 ATATAATACCAGCACTAGGCCTGCGGGATTTATCCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTATCCCGG
75100288 ATATAATACCAGCACGAAGCCTGCGGGATTTATCCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTATCCCGG
*
75100326 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTATCCCGG
** * *
75100364 ATATTTTACCAGTATGAAGCCTGCGGG
1 ATATAATACCAGCACGAAGCCTGCGGG
75100391 TCTTTAAGCC
Statistics
Matches: 96, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 96 1.00
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.23
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTATCCCGG
Found at i:75104544 original size:27 final size:27
Alignment explanation
Indices: 75104509--75104620 Score: 131
Period size: 27 Copynumber: 4.1 Consensus size: 27
75104499 AGCATGGCTG
* *
75104509 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
75104535 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
* *
75104563 CCA-AAACAGAAATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
*
75104590 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
75104617 CCAG
1 CCAG
75104621 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
26 6 0.08
27 52 0.70
28 16 0.22
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:75104609 original size:54 final size:54
Alignment explanation
Indices: 75104513--75104619 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 54
75104503 TGGCTGCCAG
* *
75104513 AACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCACCAA
1 AACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACCAA
* * *
75104567 AACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCA
1 AACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACCA
75104620 GGACGCTTCC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
54 29 0.62
55 18 0.38
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.16
Consensus pattern (54 bp):
AACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACCAA
Found at i:75106070 original size:24 final size:24
Alignment explanation
Indices: 75106040--75106110 Score: 97
Period size: 24 Copynumber: 3.0 Consensus size: 24
75106030 CTAGATTTCC
**
75106040 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
* *
75106064 TCTCTTATCAACTCCCAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
*
75106088 TCCCTTATCAATTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
75106111 CTCCTGACAG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.25, C:0.37, G:0.01, T:0.37
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:75110162 original size:30 final size:30
Alignment explanation
Indices: 75110100--75110162 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
75110090 ACTTATTTTA
* *
75110100 TTGTTAATTTTTTTATTATTTTAAAGGTAT
1 TTGTTAATTTTGTTATTATTTTAAAGGAAT
**
75110130 TTGTTAATTTTGTTATTATTTTAGCGGAAT
1 TTGTTAATTTTGTTATTATTTTAAAGGAAT
75110160 TTG
1 TTG
75110163 CTTGTTAAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.24, C:0.02, G:0.14, T:0.60
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGAAT
Found at i:75111035 original size:9 final size:9
Alignment explanation
Indices: 75111021--75111070 Score: 64
Period size: 9 Copynumber: 5.4 Consensus size: 9
75111011 AACATTTCTA
75111021 TTTTTTTAT
1 TTTTTTTAT
75111030 TTTTTTTAT
1 TTTTTTTAT
*
75111039 TTTTTATAT
1 TTTTTTTAT
*
75111048 TTTTTGTAAT
1 TTTTT-TTAT
*
75111058 TTTTTATAT
1 TTTTTTTAT
75111067 TTTT
1 TTTT
75111071 AGTAATTTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
9 28 0.80
10 7 0.20
ACGTcount: A:0.16, C:0.00, G:0.02, T:0.82
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:75111051 original size:19 final size:19
Alignment explanation
Indices: 75111019--75111070 Score: 81
Period size: 19 Copynumber: 2.8 Consensus size: 19
75111009 TTAACATTTC
75111019 TATTTTTT-TATTTTTT-T
1 TATTTTTTATATTTTTTGT
75111036 TATTTTTTATATTTTTTGT
1 TATTTTTTATATTTTTTGT
*
75111055 AATTTTTTATATTTTT
1 TATTTTTTATATTTTT
75111071 AGTAATTTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
17 8 0.25
18 8 0.25
19 16 0.50
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (19 bp):
TATTTTTTATATTTTTTGT
Found at i:75111075 original size:19 final size:18
Alignment explanation
Indices: 75111020--75111079 Score: 77
Period size: 19 Copynumber: 3.3 Consensus size: 18
75111010 TAACATTTCT
* *
75111020 ATTTTTT-TATTTTTTTT
1 ATTTTTTATATTTTTGTA
75111037 ATTTTTTATATTTTTTGTA
1 ATTTTTTATA-TTTTTGTA
75111056 ATTTTTTATATTTTTAGTA
1 ATTTTTTATATTTTT-GTA
75111075 ATTTT
1 ATTTT
75111080 ATAATTATAC
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
17 7 0.18
18 7 0.18
19 24 0.63
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (18 bp):
ATTTTTTATATTTTTGTA
Found at i:75114984 original size:156 final size:156
Alignment explanation
Indices: 75114695--75115002 Score: 607
Period size: 156 Copynumber: 2.0 Consensus size: 156
75114685 ATTTATTTTT
75114695 TTTACTTTTGAGATAGAACTAGCTTAATCTATTAATTAAGTAAAAGTTTAATTATAACTTTCAAC
1 TTTACTTTTGAGATAGAACTAGCTTAATCTATTAATTAAGTAAAAGTTTAATTATAACTTTCAAC
75114760 ATTTTGTAAAACAAGTCCTCCATTACTTCTAAAATTAAATTCTCAAAAGTATAGAAAGAAATAGA
66 ATTTTGTAAAACAAGTCCTCCATTACTTCTAAAATTAAATTCTCAAAAGTATAGAAAGAAATAGA
75114825 TTATTGCGTGAAATATCCAAATTAAA
131 TTATTGCGTGAAATATCCAAATTAAA
*
75114851 TTTATTTTTGAGATAGAACTAGCTTAATCTATTAATTAAGTAAAAGTTTAATTATAACTTTCAAC
1 TTTACTTTTGAGATAGAACTAGCTTAATCTATTAATTAAGTAAAAGTTTAATTATAACTTTCAAC
75114916 ATTTTGTAAAACAAGTCCTCCATTACTTCTAAAATTAAATTCTCAAAAGTATAGAAAGAAATAGA
66 ATTTTGTAAAACAAGTCCTCCATTACTTCTAAAATTAAATTCTCAAAAGTATAGAAAGAAATAGA
75114981 TTATTGCGTGAAATATCCAAAT
131 TTATTGCGTGAAATATCCAAAT
75115003 GTTTACGTGA
Statistics
Matches: 151, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
156 151 1.00
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.36
Consensus pattern (156 bp):
TTTACTTTTGAGATAGAACTAGCTTAATCTATTAATTAAGTAAAAGTTTAATTATAACTTTCAAC
ATTTTGTAAAACAAGTCCTCCATTACTTCTAAAATTAAATTCTCAAAAGTATAGAAAGAAATAGA
TTATTGCGTGAAATATCCAAATTAAA
Found at i:75115135 original size:3 final size:3
Alignment explanation
Indices: 75115112--75115153 Score: 63
Period size: 3 Copynumber: 15.0 Consensus size: 3
75115102 TCTGTGAAAA
75115112 AAT AA- AAT AA- AAT AA- AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
75115154 GAACACACAA
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
2 6 0.17
3 30 0.83
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:75122982 original size:68 final size:67
Alignment explanation
Indices: 75122910--75123059 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
75122900 CATCATGTGT
* * * *
75122910 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
75122972 ATGTAG
62 ATGTAG
** * *
75122978 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
75123043 AG
66 AG
75123045 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
75123060 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:75123015 original size:64 final size:64
Alignment explanation
Indices: 75122934--75123117 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
75122924 AGACATTATG
* *
75122934 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
75122998 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
75123063 AA
63 AA
* * * *
75123065 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
75123118 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:75124807 original size:22 final size:22
Alignment explanation
Indices: 75124781--75124825 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
75124771 AATGAACGCT
75124781 TTGAAATATGAATAAAATTTTA
1 TTGAAATATGAATAAAATTTTA
75124803 TTGAAATATGAATAAAATTTTA
1 TTGAAATATGAATAAAATTTTA
75124825 T
1 T
75124826 GGCTCGTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.42
Consensus pattern (22 bp):
TTGAAATATGAATAAAATTTTA
Found at i:75126135 original size:50 final size:50
Alignment explanation
Indices: 75126075--75126174 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
75126065 TTCAACCTAA
75126075 AACACATGGAAACCCTAGGAGAGAGAAAAGAAACTTTCAAGGCCTAATTG
1 AACACATGGAAACCCTAGGAGAGAGAAAAGAAACTTTCAAGGCCTAATTG
75126125 AACACATGGAAACCCTAGGAGAGAGAAAAGAAACTTTCAAGGCCTAATTG
1 AACACATGGAAACCCTAGGAGAGAGAAAAGAAACTTTCAAGGCCTAATTG
75126175 GGTAAGTTCT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.44, C:0.18, G:0.22, T:0.16
Consensus pattern (50 bp):
AACACATGGAAACCCTAGGAGAGAGAAAAGAAACTTTCAAGGCCTAATTG
Found at i:75127318 original size:19 final size:19
Alignment explanation
Indices: 75127277--75127318 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
75127267 TTCAACGGAC
**
75127277 ATGAAAATCTTGACATGGC
1 ATGAAAATCTTGACATGAA
*
75127296 ATGAAAATCTTGAGATGAA
1 ATGAAAATCTTGACATGAA
75127315 ATGA
1 ATGA
75127319 TAATGACTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.43, C:0.10, G:0.21, T:0.26
Consensus pattern (19 bp):
ATGAAAATCTTGACATGAA
Found at i:75133921 original size:39 final size:39
Alignment explanation
Indices: 75133867--75133952 Score: 156
Period size: 39 Copynumber: 2.2 Consensus size: 39
75133857 TGGTAGAAAC
*
75133867 TTTC-ATTAGGCATCATTTTAAAGTGGAAGCTTTTTAGT
1 TTTCAATTAGGAATCATTTTAAAGTGGAAGCTTTTTAGT
75133905 TTTCAATTAGGAATCATTTTAAAGTGGAAGCTTTTTAGT
1 TTTCAATTAGGAATCATTTTAAAGTGGAAGCTTTTTAGT
75133944 TTTCAATTA
1 TTTCAATTA
75133953 TTGTTTTATA
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
38 4 0.09
39 42 0.91
ACGTcount: A:0.29, C:0.09, G:0.16, T:0.45
Consensus pattern (39 bp):
TTTCAATTAGGAATCATTTTAAAGTGGAAGCTTTTTAGT
Found at i:75137414 original size:29 final size:29
Alignment explanation
Indices: 75137340--75137458 Score: 104
Period size: 29 Copynumber: 4.2 Consensus size: 29
75137330 TACATACATG
*
75137340 CATATGGCCTACTAGGCCCAA-TCTTATT
1 CATATGGCCTACTAGGCCCAATTCATATT
*
75137368 CAAATGG-CTGATCT-GGCCCAATTCATATT
1 CATATGGCCT-A-CTAGGCCCAATTCATATT
* * *
75137397 CTTATGGCCCACTAGGCCAAATTC-TCATT
1 CATATGGCCTACTAGGCCCAATTCAT-ATT
* * *
75137426 CATACGGCCTATTAGGCCCAAATCATATT
1 CATATGGCCTACTAGGCCCAATTCATATT
75137455 -ATAT
1 CATAT
75137459 TCATGCTCAC
Statistics
Matches: 71, Mismatches: 13, Indels: 14
0.72 0.13 0.14
Matches are distributed among these distances:
27 2 0.03
28 20 0.28
29 47 0.66
30 2 0.03
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (29 bp):
CATATGGCCTACTAGGCCCAATTCATATT
Found at i:75141908 original size:29 final size:29
Alignment explanation
Indices: 75141844--75141961 Score: 116
Period size: 29 Copynumber: 4.2 Consensus size: 29
75141834 TACATACATG
* *
75141844 CATATGGCCCACTAGG-CCAA-TCTTATT
1 CATATGGCCCATTAGGCCCAATTCATATT
* * *
75141871 CAAATGGCCCATTTGGCCCAGTTCATATT
1 CATATGGCCCATTAGGCCCAATTCATATT
* * * *
75141900 CTTATGGCCCACTAGGCCAAATTCTTATT
1 CATATGGCCCATTAGGCCCAATTCATATT
* *
75141929 CATATGGTCCATTAGGCCCAAATCATATT
1 CATATGGCCCATTAGGCCCAATTCATATT
75141958 -ATAT
1 CATAT
75141962 TCATGCTCAC
Statistics
Matches: 71, Mismatches: 18, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
27 13 0.18
28 7 0.10
29 51 0.72
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.32
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAATTCATATT
Found at i:75141912 original size:56 final size:58
Alignment explanation
Indices: 75141846--75141957 Score: 165
Period size: 58 Copynumber: 2.0 Consensus size: 58
75141836 CATACATGCA
* **
75141846 TATGGCCCACTAGGCC-AA-TCTTATTCAAATGGCCCATTTGGCCCAGTTCATATTCT
1 TATGGCCCACTAGGCCAAATTCTTATTCAAATGGCCCATTAGGCCCAAATCATATTCT
* *
75141902 TATGGCCCACTAGGCCAAATTCTTATTCATATGGTCCATTAGGCCCAAATCATATT
1 TATGGCCCACTAGGCCAAATTCTTATTCAAATGGCCCATTAGGCCCAAATCATATT
75141958 ATATTCATGC
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
56 16 0.33
57 2 0.04
58 31 0.63
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (58 bp):
TATGGCCCACTAGGCCAAATTCTTATTCAAATGGCCCATTAGGCCCAAATCATATTCT
Found at i:75151242 original size:49 final size:49
Alignment explanation
Indices: 75151168--75151796 Score: 1012
Period size: 49 Copynumber: 13.1 Consensus size: 49
75151158 CACTTCGGGA
* * * * *
75151168 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
75151215 CCTGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75151264 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
75151311 CCTATCACATGTATATACACTTTCACATTCGTCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75151360 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75151409 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75151456 CCTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75151503 CCTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75151552 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75151601 CTTATCAC--GTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75151648 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75151697 CGTATCAC--GTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75151744 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75151793 CTTA
1 CTTA
75151797 CTATCATTTC
Statistics
Matches: 544, Mismatches: 28, Indels: 18
0.92 0.05 0.03
Matches are distributed among these distances:
47 237 0.44
48 1 0.00
49 306 0.56
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.31
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75151332 original size:96 final size:96
Alignment explanation
Indices: 75151168--75151793 Score: 994
Period size: 96 Copynumber: 6.5 Consensus size: 96
75151158 CACTTCGGGA
* * * * * * * *
75151168 CTTATCAC-ATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATA
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACA-GTATATA
*
75151232 CACTTCCACATTCATCACATCGGCCATTAGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
75151264 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATGTATATA
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACA-GTATATA
*
75151328 CACTTTCACATTCGTCACATCGGCCATTAGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
*
75151360 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-TATATA
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAGTATATA
75151424 CACTTTCACATTCATCACATCGGCCATTAGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
* *
75151456 CCTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATA
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACA-GTATATA
*
75151520 CATTTTCACATTCATCACATCGGCCATTAGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
*
75151552 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-GTATATA
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAGTATATA
75151616 CACTTTCACATTCATCACATCGGCCATTAGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
*
75151648 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCGTATCAC-GTATATA
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAGTATATA
75151712 CACTTTCACATTCATCACATCGGCCATTAGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
*
75151744 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
75151794 TTACTATCAT
Statistics
Matches: 503, Mismatches: 21, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
94 47 0.09
96 363 0.72
98 93 0.18
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.31
Consensus pattern (96 bp):
CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAGTATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75156417 original size:23 final size:22
Alignment explanation
Indices: 75156394--75156436 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
75156384 TTTCCCTTGA
75156394 AACA-AGGTCACACGCCCGTGTG
1 AACATAGG-CACACGCCCGTGTG
*
75156416 AACATAGGGACACGCCCGTGT
1 AACATAGGCACACGCCCGTGT
75156437 ACCTTTGGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.28, C:0.30, G:0.28, T:0.14
Consensus pattern (22 bp):
AACATAGGCACACGCCCGTGTG
Found at i:75158439 original size:46 final size:46
Alignment explanation
Indices: 75158360--75158460 Score: 143
Period size: 46 Copynumber: 2.2 Consensus size: 46
75158350 AGACAGGTCC
* *
75158360 TACACTAGCTTGTATATCTAGAGGCCGATGCATGTCCCAAACATGTTT
1 TACACTAGCTTGTATATCTAAAGGCCGATGCATGTCCC--ACATGTCT
*
75158408 TACACTAGCTT-T-TATCTAAATGCCGATGCATGTCCCACATGTCT
1 TACACTAGCTTGTATATCTAAAGGCCGATGCATGTCCCACATGTCT
75158452 TACACTAGC
1 TACACTAGC
75158461 ACACATATCA
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
44 16 0.32
46 22 0.44
47 1 0.02
48 11 0.22
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.32
Consensus pattern (46 bp):
TACACTAGCTTGTATATCTAAAGGCCGATGCATGTCCCACATGTCT
Found at i:75164139 original size:33 final size:33
Alignment explanation
Indices: 75164097--75164165 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
75164087 TAAGCTTTGT
75164097 ATGTTATGCATATGAAACAGGTGAGGAAAGGTA
1 ATGTTATGCATATGAAACAGGTGAGGAAAGGTA
75164130 ATGTTATGCATATGAAACAGGTGAGGAAAGGTA
1 ATGTTATGCATATGAAACAGGTGAGGAAAGGTA
75164163 ATG
1 ATG
75164166 GTAAGTTCAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.39, C:0.06, G:0.30, T:0.25
Consensus pattern (33 bp):
ATGTTATGCATATGAAACAGGTGAGGAAAGGTA
Found at i:75169264 original size:20 final size:21
Alignment explanation
Indices: 75169221--75169266 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
75169211 ACTGTTTTTT
75169221 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
75169241 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
75169260 TATGGGC
1 TATGGGC
75169267 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:75180480 original size:32 final size:32
Alignment explanation
Indices: 75180444--75180508 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
75180434 TATATGCATT
75180444 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
75180476 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
75180508 T
1 T
75180509 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:75181997 original size:26 final size:26
Alignment explanation
Indices: 75181968--75182020 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
75181958 TTTACAATTT
75181968 TACCCCTAGGAGATAAATT-ACCAAAA
1 TACCCCTA-GAGATAAATTGACCAAAA
* *
75181994 TACCCCTAGAGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCAAAA
75182020 T
1 T
75182021 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.42, C:0.23, G:0.11, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCAAAA
Found at i:75188239 original size:32 final size:32
Alignment explanation
Indices: 75188203--75188267 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
75188193 TGTATGCATT
75188203 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
75188235 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
75188267 T
1 T
75188268 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:75189767 original size:26 final size:26
Alignment explanation
Indices: 75189737--75189789 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
75189727 TTTATAGTTT
75189737 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
75189763 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
75189789 T
1 T
75189790 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:75189840 original size:21 final size:21
Alignment explanation
Indices: 75189801--75189840 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
75189791 CATGTTTGAC
*
75189801 TGTTGTTTTTACTGCATGCCA
1 TGTTGTTATTACTGCATGCCA
75189822 TGTTGTTATTATCTG-ATGC
1 TGTTGTTATTA-CTGCATGC
75189841 ATGGGACTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.15, C:0.15, G:0.20, T:0.50
Consensus pattern (21 bp):
TGTTGTTATTACTGCATGCCA
Found at i:75192938 original size:28 final size:28
Alignment explanation
Indices: 75192906--75192963 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
75192896 TCGGTGATGG
75192906 ATACCGTACCAATGGCTTGAGATCCTGC
1 ATACCGTACCAATGGCTTGAGATCCTGC
75192934 ATACCGTACCAATGGCTTGAGATCCTGC
1 ATACCGTACCAATGGCTTGAGATCCTGC
75192962 AT
1 AT
75192964 GTGTTGTGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (28 bp):
ATACCGTACCAATGGCTTGAGATCCTGC
Found at i:75196922 original size:22 final size:23
Alignment explanation
Indices: 75196897--75196942 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
75196887 CAACCAAACC
75196897 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
75196919 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
75196942 A
1 A
75196943 CGTCATCATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:75196948 original size:23 final size:22
Alignment explanation
Indices: 75196904--75196953 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 22
75196894 ACCAATTCAA
*
75196904 CATATTTTCAAGATAAATTCAT
1 CATATTTTCAAGATAAAGTCAT
*
75196926 GCATATTTAT-AAGATAACGTCAT
1 -CATATTT-TCAAGATAAAGTCAT
75196949 CATAT
1 CATAT
75196954 ACCCAAAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 5 0.21
23 18 0.75
24 1 0.04
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.38
Consensus pattern (22 bp):
CATATTTTCAAGATAAAGTCAT
Found at i:75200508 original size:26 final size:26
Alignment explanation
Indices: 75200479--75200560 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
75200469 TGATAAAAAT
*
75200479 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75200505 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75200531 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75200557 TGAT
1 TGAT
75200561 GGGCATTTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.32, C:0.07, G:0.26, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:75201777 original size:76 final size:76
Alignment explanation
Indices: 75201651--75201799 Score: 298
Period size: 76 Copynumber: 2.0 Consensus size: 76
75201641 TAGTAATCCA
75201651 ATTGTAGGCAGTTCGTGTGTGGATCTCGTCAGCATATCGTCGCAAACAGGTGTGTAACTAACACC
1 ATTGTAGGCAGTTCGTGTGTGGATCTCGTCAGCATATCGTCGCAAACAGGTGTGTAACTAACACC
75201716 CTCTTATAGAC
66 CTCTTATAGAC
75201727 ATTGTAGGCAGTTCGTGTGTGGATCTCGTCAGCATATCGTCGCAAACAGGTGTGTAACTAACACC
1 ATTGTAGGCAGTTCGTGTGTGGATCTCGTCAGCATATCGTCGCAAACAGGTGTGTAACTAACACC
75201792 CTCTTATA
66 CTCTTATA
75201800 TATGTGTGAT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 73 1.00
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (76 bp):
ATTGTAGGCAGTTCGTGTGTGGATCTCGTCAGCATATCGTCGCAAACAGGTGTGTAACTAACACC
CTCTTATAGAC
Found at i:75201830 original size:22 final size:22
Alignment explanation
Indices: 75201804--75201902 Score: 103
Period size: 22 Copynumber: 4.4 Consensus size: 22
75201794 CTTATATATG
75201804 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
75201826 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * * *
75201848 TGTGATGAATG-TGAACAT-GCGTATG
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
75201873 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
75201895 TGTGATAA
1 TGTGATAA
75201903 ATGTGAACCC
Statistics
Matches: 62, Mismatches: 8, Indels: 14
0.74 0.10 0.17
Matches are distributed among these distances:
22 37 0.60
23 9 0.15
24 9 0.15
25 7 0.11
ACGTcount: A:0.31, C:0.14, G:0.31, T:0.23
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:75201878 original size:47 final size:47
Alignment explanation
Indices: 75201826--75202233 Score: 555
Period size: 47 Copynumber: 8.5 Consensus size: 47
75201816 GAATGGCCAA
*
75201826 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATG
* **
75201873 TGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAACCCGTATATATATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA--C--ATGCATATG
**
75201924 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATG
* * *
75201971 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG--CATATG
*
75202020 TGCATGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATG
1 TG--TGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATG
*
75202069 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATG
* * * *
75202116 TGTGATAAGTCTGAATGGCCAATGTGATGAAAGTGAACATGCATATA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATG
* * * *
75202163 TGAGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGTATATA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATG
* *
75202210 TGTGGTAAGGCCGAATGGCTAATG
1 TGTGATAAGGCCGAATGGCCAATG
75202234 CGAAATGTGT
Statistics
Matches: 325, Mismatches: 28, Indels: 16
0.88 0.08 0.04
Matches are distributed among these distances:
47 232 0.71
49 13 0.04
51 80 0.25
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATG
Found at i:75201943 original size:98 final size:96
Alignment explanation
Indices: 75201826--75202233 Score: 599
Period size: 98 Copynumber: 4.2 Consensus size: 96
75201816 GAATGGCCAA
75201826 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGG
*
75201891 CCAATGTGATAAATGTGAACCCGTATATATATG
66 CCAATGTGATGAATGTGAA--CGTATATATATG
*
75201924 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGG
75201989 CCAATGTGATGAATGTGAACCTGTATATATATG
66 CCAATGTGATGAATGTGAA-C-GTATATATATG
**
75202022 CATGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGG
***
75202087 CCAATGTGATGAATGTGAAC--ATGCGTATG
66 CCAATGTGATGAATGTGAACGTATATATATG
* * * * * *
75202116 TGTGATAAGTCTGAATGGCCAATGTGATGAAAGTGAACATGCATATATGAGATAAGGCCGAATGG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGG
* * *
75202181 CCAATGTGATGAATATGAACATGTATATATG
66 CCAATGTGATGAATGTGAACGTATATATATG
*
75202212 TG-G-TAAGGCCGAATGGCTAATG
1 TGTGATAAGGCCGAATGGCCAATG
75202234 CGAAATGTGT
Statistics
Matches: 283, Mismatches: 24, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
94 98 0.35
95 1 0.00
96 7 0.02
97 3 0.01
98 174 0.61
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.26
Consensus pattern (96 bp):
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGG
CCAATGTGATGAATGTGAACGTATATATATG
Found at i:75202051 original size:25 final size:25
Alignment explanation
Indices: 75202023--75202098 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
75202013 ATATATATGC
75202023 ATGATAAGGCCGAATGGCCAATGTG
1 ATGATAAGGCCGAATGGCCAATGTG
* * **
75202048 ATGA-ATGTG--AACAT-GCGTATGTG
1 ATGATAAG-GCCGA-ATGGCCAATGTG
75202071 -TGATAAGGCCGAATGGCCAATGTG
1 ATGATAAGGCCGAATGGCCAATGTG
75202095 ATGA
1 ATGA
75202099 ATGTGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.33
24 12 0.33
25 8 0.22
ACGTcount: A:0.32, C:0.13, G:0.32, T:0.24
Consensus pattern (25 bp):
ATGATAAGGCCGAATGGCCAATGTG
Found at i:75202069 original size:23 final size:23
Alignment explanation
Indices: 75202043--75202117 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
75202033 CGAATGGCCA
75202043 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
75202066 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
75202090 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
75202113 ATGTG
1 ATGTG
75202118 TGATAAGTCT
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:75202069 original size:145 final size:142
Alignment explanation
Indices: 75201826--75202233 Score: 595
Period size: 145 Copynumber: 2.8 Consensus size: 142
75201816 GAATGGCCAA
* *
75201826 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTG-TGATAAGGCCGAATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGATGATAAGGCCGAATG
* *
75201890 GCCAATGTGATAAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAA
66 GCCAATGTGATGAATGTGAA--C--ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAA
*
75201955 TGTGAACATGTGTATG
127 TGTGAACATGCGTATG
* *
75201971 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATGCATGATAAGGCCGA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG--CATATATG-ATGATAAGGCCGA
**
75202036 ATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
63 ATGGCCAATGTGATGAATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
75202101 GTGAACATGCGTATG
128 GTGAACATGCGTATG
* * *
75202116 TGTGATAAGTCTGAATGGCCAATGTGATGAAAGTGAACATGCATATATGA-GATAAGGCCGAATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGATGATAAGGCCGAATG
* * * *
75202180 GCCAATGTGATGAATATGAACATGTATATATGTGGTAAGGCCGAATGGCTAATG
66 GCCAATGTGATGAATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATG
75202234 CGAAATGTGT
Statistics
Matches: 239, Mismatches: 20, Indels: 12
0.88 0.07 0.04
Matches are distributed among these distances:
141 62 0.26
142 1 0.00
143 7 0.03
145 129 0.54
147 6 0.03
149 34 0.14
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.26
Consensus pattern (142 bp):
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGATGATAAGGCCGAATG
GCCAATGTGATGAATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
AACATGCGTATG
Found at i:75202152 original size:22 final size:22
Alignment explanation
Indices: 75202081--75202152 Score: 58
Period size: 24 Copynumber: 3.1 Consensus size: 22
75202071 TGATAAGGCC
*
75202081 GAATGGCCAATGTGATGAATGT
1 GAATGGCCAATGTGATGAAAGT
**
75202103 GAACAT-GCGTATGTG-TGATAAGTCT
1 G-A-ATGGCCAATGTGATGA-AAG--T
75202128 GAATGGCCAATGTGATGAAAGT
1 GAATGGCCAATGTGATGAAAGT
75202150 GAA
1 GAA
75202153 CATGCATATA
Statistics
Matches: 38, Mismatches: 5, Indels: 14
0.67 0.09 0.25
Matches are distributed among these distances:
22 8 0.21
23 12 0.32
24 13 0.34
25 5 0.13
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.26
Consensus pattern (22 bp):
GAATGGCCAATGTGATGAAAGT
Found at i:75202273 original size:46 final size:46
Alignment explanation
Indices: 75202207--75202296 Score: 135
Period size: 46 Copynumber: 2.0 Consensus size: 46
75202197 GAACATGTAT
* * *
75202207 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATAG
* *
75202253 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGAT
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGAT
75202297 GTGTATATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATAG
Found at i:75202586 original size:37 final size:37
Alignment explanation
Indices: 75202436--75202585 Score: 255
Period size: 37 Copynumber: 4.0 Consensus size: 37
75202426 CACTTGGAAA
75202436 TATATTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATA-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
75202474 TATATCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATATCCGGGTAAGACCCGATGACTACGTGTGGAGAT
75202511 TATATCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATATCCGGGTAAGACCCGATGACTACGTGTGGAGAT
* * * *
75202548 TTTGTCCGGGTAAGACCCGATAACTTCGTGTGGAGAT
1 TATATCCGGGTAAGACCCGATGACTACGTGTGGAGAT
75202585 T
1 T
75202586 TCGTCTGAGC
Statistics
Matches: 108, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
37 104 0.96
38 4 0.04
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (37 bp):
TATATCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:75218972 original size:30 final size:30
Alignment explanation
Indices: 75218938--75218998 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
75218928 TCCTTAACTC
75218938 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
75218968 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
75218998 A
1 A
75218999 GGCTCGGAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:75225612 original size:16 final size:17
Alignment explanation
Indices: 75225583--75225615 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
75225573 CCTAAATTTT
*
75225583 CCTTTTCTTTTTCTTTC
1 CCTTTTCTTCTTCTTTC
75225600 CCTTTT-TTCTTCTTTC
1 CCTTTTCTTCTTCTTTC
75225616 TTTCTCTGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (17 bp):
CCTTTTCTTCTTCTTTC
Found at i:75229147 original size:15 final size:15
Alignment explanation
Indices: 75229122--75229177 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
75229112 TGATATTTTC
* *
75229122 TTATAGATTTCTTTA
1 TTATGGATTTCTATA
75229137 TGT-TGGATTTCTATA
1 T-TATGGATTTCTATA
* *
75229152 TTATGGATTTCTCTG
1 TTATGGATTTCTATA
75229167 TTATGGATTTC
1 TTATGGATTTC
75229178 CTTATCTTGA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
14 1 0.03
15 33 0.94
16 1 0.03
ACGTcount: A:0.20, C:0.09, G:0.16, T:0.55
Consensus pattern (15 bp):
TTATGGATTTCTATA
Found at i:75239592 original size:27 final size:27
Alignment explanation
Indices: 75239547--75239635 Score: 81
Period size: 27 Copynumber: 3.3 Consensus size: 27
75239537 ATACATACAT
* * * *
75239547 GTTGTGCCTACCTGACAGGCTCAACTA
1 GTTGAGCCTATCTGGCAGGCACAACTA
*
75239574 GTTGAGCCTATCTGGCAGGCACGACTA
1 GTTGAGCCTATCTGGCAGGCACAACTA
* * *
75239601 GTTGTGCCT-TCTTGGTAGGCACAACTG
1 GTTGAGCCTATC-TGGCAGGCACAACTA
*
75239628 GTGGAGCC
1 GTTGAGCC
75239636 CACATGCTTA
Statistics
Matches: 50, Mismatches: 11, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
26 2 0.04
27 48 0.96
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (27 bp):
GTTGAGCCTATCTGGCAGGCACAACTA
Found at i:75245676 original size:21 final size:21
Alignment explanation
Indices: 75245635--75245676 Score: 50
Period size: 23 Copynumber: 2.0 Consensus size: 21
75245625 CTTATGTCAC
75245635 AAAAAAAATTTAATATCTTAAT
1 AAAAAAAATTTAATA-CTTAAT
*
75245657 AAAAAGAATTTTAATA-TTAA
1 AAAAA-AAATTTAATACTTAA
75245677 AATGATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 4 0.22
22 5 0.28
23 9 0.50
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (21 bp):
AAAAAAAATTTAATACTTAAT
Found at i:75247361 original size:28 final size:31
Alignment explanation
Indices: 75247318--75247384 Score: 88
Period size: 28 Copynumber: 2.3 Consensus size: 31
75247308 TAGCAAACAA
75247318 ATATAT-AAATATAAATAAA-TAAAT-ATTT
1 ATATATAAAATATAAATAAATTAAATAATTT
*
75247346 ATATATAAAATA-AAATAAATTGAATAATTT
1 ATATATAAAATATAAATAAATTAAATAATTT
*
75247376 ATATTTAAA
1 ATATATAAA
75247385 TTATCATATG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 13 0.38
29 9 0.26
30 12 0.35
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.39
Consensus pattern (31 bp):
ATATATAAAATATAAATAAATTAAATAATTT
Found at i:75249695 original size:25 final size:26
Alignment explanation
Indices: 75249667--75249715 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
75249657 CGAATTCTTC
75249667 TTTCTCTTCTCC-TCTCTTCTTCTAT
1 TTTCTCTTCTCCTTCTCTTCTTCTAT
* *
75249692 TTTCTTTTCTCCTTCTTTTCTTCT
1 TTTCTCTTCTCCTTCTCTTCTTCT
75249716 CTAGCCAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.02, C:0.33, G:0.00, T:0.65
Consensus pattern (26 bp):
TTTCTCTTCTCCTTCTCTTCTTCTAT
Found at i:75255544 original size:87 final size:88
Alignment explanation
Indices: 75255397--75255652 Score: 281
Period size: 87 Copynumber: 3.0 Consensus size: 88
75255387 TTAATTCTAT
** * * * * * * *
75255397 TTTGGAAACAAAAT--TGAAATTGAATAAAATCTGTTAAACGGCGGGAATAAATCCCAAAACAAA
1 TTTGGAAACAAAATCAAAAAATGGAATAAAATCTGTTGAACGGAGAGAATAAATTCCGAAACAGA
*
75255460 TTTTATTTAATTTTAATTTCTCG
66 TTTTATTTAATTTTAATTTCTCA
* *
75255483 TTTGGCAACAAAAT-AAAAAATGGAATAAAATCTGTTGAACGGAGAAAATAAATTCCGAAACAGA
1 TTTGGAAACAAAATCAAAAAATGGAATAAAATCTGTTGAACGGAGAGAATAAATTCCGAAACAGA
* *
75255547 TTTTATTT-ATTTTAAATACTCA
66 TTTTATTTAATTTTAATTTCTCA
* * *
75255569 TTTGGAAACAAAGTCAAAAAATGAAATAAAATCTGTTGAAC-GACAGGAATAAA-TCCTGAAACA
1 TTTGGAAACAAAATCAAAAAATGGAATAAAATCTGTTGAACGGAGA-GAATAAATTCC-GAAACA
* *
75255632 GATTTTATTCAATTTTTATTT
64 GATTTTATTTAATTTTAATTT
75255653 TTATTTTCAA
Statistics
Matches: 142, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
86 42 0.30
87 93 0.65
88 7 0.05
ACGTcount: A:0.44, C:0.11, G:0.13, T:0.32
Consensus pattern (88 bp):
TTTGGAAACAAAATCAAAAAATGGAATAAAATCTGTTGAACGGAGAGAATAAATTCCGAAACAGA
TTTTATTTAATTTTAATTTCTCA
Found at i:75273203 original size:29 final size:29
Alignment explanation
Indices: 75273143--75273221 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 29
75273133 AAAAATAATC
* * * * *
75273143 CATCTCGTCAAAATAATTTTTTTAGAATA
1 CATCACGTCAAAATTATTTTTTCAAAACA
*
75273172 CATCACGTCAAATTTATTTTTTCAAAACA
1 CATCACGTCAAAATTATTTTTTCAAAACA
*
75273201 CAT-ATTGTCAAAATTATTTTT
1 CATCA-CGTCAAAATTATTTTT
75273222 CCCATAACAA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
28 1 0.02
29 40 0.98
ACGTcount: A:0.37, C:0.15, G:0.05, T:0.43
Consensus pattern (29 bp):
CATCACGTCAAAATTATTTTTTCAAAACA
Found at i:75273354 original size:63 final size:65
Alignment explanation
Indices: 75273251--75273394 Score: 177
Period size: 64 Copynumber: 2.2 Consensus size: 65
75273241 ATAAAAAAAG
** *
75273251 CCCTAAAACCCTAAACAATTTAAAACCTAATACCCAAATTT-AATTTTTCCTAAACTCTA-TCAA
1 CCCTAAAACCCTAAACAATTTAAAAAATAATACCCAAATTTGAATTTTTCC-AAACCCTATTCAA
75273314 A
65 A
* * *
75273315 CCCTAAAACCCTAAATAA-TTAAAAAATAATACCCTAATTTGATTTTTTCCAAACCCTATTCAAA
1 CCCTAAAACCCTAAACAATTTAAAAAATAATACCCAAATTTGAATTTTTCCAAACCCTATTCAAA
* * *
75273379 CTCAAAAATCCTAAAC
1 CCCTAAAACCCTAAAC
75273395 CTAGGTCCTA
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
63 26 0.38
64 42 0.62
ACGTcount: A:0.44, C:0.26, G:0.01, T:0.29
Consensus pattern (65 bp):
CCCTAAAACCCTAAACAATTTAAAAAATAATACCCAAATTTGAATTTTTCCAAACCCTATTCAAA
Found at i:75273977 original size:49 final size:50
Alignment explanation
Indices: 75273901--75273996 Score: 135
Period size: 49 Copynumber: 1.9 Consensus size: 50
75273891 TAAAAAAAAT
75273901 TTAAAAATATATAAAAATATTTTTTAAA-AATAAAAA-TAATTAAATTTA
1 TTAAAAATATATAAAAATATTTTTTAAATAATAAAAATTAATTAAATTTA
**
75273949 TTAAAAAGTATA-AAAATATATTTTTTAAATTTTAAAAATTAATTAAAT
1 TTAAAAA-TATATAAAA-ATATTTTTTAAATAATAAAAATTAATTAAAT
75273997 GTTGACATGT
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
48 11 0.26
49 16 0.38
50 6 0.14
51 9 0.21
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (50 bp):
TTAAAAATATATAAAAATATTTTTTAAATAATAAAAATTAATTAAATTTA
Found at i:75283987 original size:26 final size:26
Alignment explanation
Indices: 75283951--75284004 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
75283941 GGAATGTAAG
75283951 TAAGATTATCAATTTGTCACAATTTA
1 TAAGATTATCAATTTGTCACAATTTA
75283977 TAAGATTATCAATTTGTCACAATTTA
1 TAAGATTATCAATTTGTCACAATTTA
75284003 TA
1 TA
75284005 TTGACATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.39, C:0.11, G:0.07, T:0.43
Consensus pattern (26 bp):
TAAGATTATCAATTTGTCACAATTTA
Found at i:75290103 original size:69 final size:68
Alignment explanation
Indices: 75290030--75290219 Score: 177
Period size: 69 Copynumber: 2.8 Consensus size: 68
75290020 AAAATTCTCA
* *
75290030 TGTTTACTGTCTCAGTG-GACTAACCTAGTTGTTATAGTCCAACCATGTTCTTACACAGTATATT
1 TGTTTACTGTC-CAG-GAGACTAACCTAGTTGTCATAGTCCAACCATGGTCTTACACAGTATATT
75290094 CCCCG
64 CCCCG
* *** * * *
75290099 TGTTTACTGTCCTGGCAGACTATTTTGGTTGTCATAGTCTAACCATGGTCTTACACCGTATATTC
1 TGTTTACTGTCCAGG-AGACTAACCTAGTTGTCATAGTCCAACCATGGTCTTACACAGTATATTC
**
75290164 CTTG
65 CCCG
* * * * *
75290168 TGTTTACTGTCCCGGTGAACTATCAT-GATTGCCATAGTCCAACCATGGTCTT
1 TGTTTACTGTCCAGGAG-ACTAACCTAG-TTGTCATAGTCCAACCATGGTCTT
75290220 TCCTAGTTGC
Statistics
Matches: 100, Mismatches: 17, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
67 1 0.01
68 4 0.04
69 95 0.95
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (68 bp):
TGTTTACTGTCCAGGAGACTAACCTAGTTGTCATAGTCCAACCATGGTCTTACACAGTATATTCC
CCG
Found at i:75290302 original size:99 final size:99
Alignment explanation
Indices: 75290126--75290315 Score: 283
Period size: 99 Copynumber: 1.9 Consensus size: 99
75290116 GACTATTTTG
* * ** * * *
75290126 GTTGTCATAGTCTAACCATGGTCTTACACCGTATATTCCTTGTGTTTACTGTCCCGGTGAACTAT
1 GTTGCCATAGTCCAACCATAATCTTACACAGTATATTCATCGTGTTTACTGTCCCGGTGAACTAT
75290191 CATGATTGCCATAGTCCAACCATGGTCTTTCCTA
66 CATGATTGCCATAGTCCAACCATGGTCTTTCCTA
75290225 GTTGCCATAGTCCAACCATAATCTTACACAGTATATTCATCGTGTTTACTGTCCCGGTGAACTAT
1 GTTGCCATAGTCCAACCATAATCTTACACAGTATATTCATCGTGTTTACTGTCCCGGTGAACTAT
* *
75290290 CCT-AGTTGCCATAGTCCAACCCTGGT
66 CATGA-TTGCCATAGTCCAACCATGGT
75290316 ATTATACTGT
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
98 1 0.01
99 80 0.99
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (99 bp):
GTTGCCATAGTCCAACCATAATCTTACACAGTATATTCATCGTGTTTACTGTCCCGGTGAACTAT
CATGATTGCCATAGTCCAACCATGGTCTTTCCTA
Found at i:75290340 original size:69 final size:69
Alignment explanation
Indices: 75290220--75290481 Score: 312
Period size: 69 Copynumber: 3.8 Consensus size: 69
75290210 CCATGGTCTT
** * * *
75290220 TCCTAGTTGCCATAGTCCAACCATAATCTTACACAGTATATTCATCGTGTTTACTGTCCCGGTGA
1 TCCTAGTTGCCATAGTCCAACCATGGTCTTACACCGTATATTCCTCGTGTTTACTGTCACGGTGA
75290285 ACTA
66 ACTA
* * * * * * * ** *
75290289 TCCTAGTTGCCATAGTCCAACCCTGGTATTATACTGTAAATTCCTCATGTTTACTATCATAG-CA
1 TCCTAGTTGCCATAGTCCAACCATGGTCTTACACCGTATATTCCTCGTGTTTACTGTCACGGTGA
75290353 GACTA
66 -ACTA
* * * *
75290358 TCCTGGTTGCCATAGTCCAACCATGGTTTTACACCGTATATTCC-CTGTGTTTACTGTCTCGATG
1 TCCTAGTTGCCATAGTCCAACCATGGTCTTACACCGTATATTCCTC-GTGTTTACTGTCACGGTG
75290422 AACTA
65 AACTA
*
75290427 TCCTAGTTGCCATAGTCCAACCATGGTCTTACACCGTATATTCCCCGTGTTTACT
1 TCCTAGTTGCCATAGTCCAACCATGGTCTTACACCGTATATTCCTCGTGTTTACT
75290482 CGGAGCTTCG
Statistics
Matches: 160, Mismatches: 29, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
68 2 0.01
69 156 0.98
70 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.15, T:0.35
Consensus pattern (69 bp):
TCCTAGTTGCCATAGTCCAACCATGGTCTTACACCGTATATTCCTCGTGTTTACTGTCACGGTGA
ACTA
Found at i:75290342 original size:168 final size:168
Alignment explanation
Indices: 75290053--75290384 Score: 389
Period size: 168 Copynumber: 2.0 Consensus size: 168
75290043 AGTGGACTAA
** ** * *
75290053 CCTAGTTGTTATAGTCCAACCATGTTCTTACACAGTATATTCCCCGTGTTTACTGTCCTGGCAGA
1 CCTAGTTGCCATAGTCCAACCATAATCTTACACAGTATATTCACCGTGTTTACTGTCCCGGCAGA
** * * * * * ** * *
75290118 CTATTTTGGTTGTCATAGTCTAACCATGGTCTTACACCGTATATTCCTTGTGTTTACTGTC-CCG
66 CTATCCTAGTTGCCATAGTCCAACCATGGTATTACACCGTAAATTCCTCATGTTTACTATCACAG
**
75290182 GTGAACTATCATGATTGCCATAGTCCAACCATGGTCTTT
131 CAG-ACTATCATGATTGCCATAGTCCAACCATGGTCTTT
* *
75290221 CCTAGTTGCCATAGTCCAACCATAATCTTACACAGTATATTCATCGTGTTTACTGTCCCGG-TGA
1 CCTAGTTGCCATAGTCCAACCATAATCTTACACAGTATATTCACCGTGTTTACTGTCCCGGCAG-
* * * *
75290285 ACTATCCTAGTTGCCATAGTCCAACCCTGGTATTATACTGTAAATTCCTCATGTTTACTATCATA
65 ACTATCCTAGTTGCCATAGTCCAACCATGGTATTACACCGTAAATTCCTCATGTTTACTATCACA
* *
75290350 GCAGACTATCCTGGTTGCCATAGTCCAACCATGGT
130 GCAGACTATCATGATTGCCATAGTCCAACCATGGT
75290385 TTTACACCGT
Statistics
Matches: 135, Mismatches: 27, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
167 1 0.01
168 132 0.98
169 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.35
Consensus pattern (168 bp):
CCTAGTTGCCATAGTCCAACCATAATCTTACACAGTATATTCACCGTGTTTACTGTCCCGGCAGA
CTATCCTAGTTGCCATAGTCCAACCATGGTATTACACCGTAAATTCCTCATGTTTACTATCACAG
CAGACTATCATGATTGCCATAGTCCAACCATGGTCTTT
Done.