Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 232 of 290
Found at i:75527908 original size:21 final size:21
Alignment explanation
Indices: 75527882--75527951 Score: 86
Period size: 21 Copynumber: 3.3 Consensus size: 21
75527872 CAGTACATGG
75527882 CCGTGTGATAGAGGCACACGC
1 CCGTGTGATAGAGGCACACGC
* ** * *
75527903 CCGTGTGGTTCAGGGACACGA
1 CCGTGTGATAGAGGCACACGC
75527924 CCGTGTGATAGAGGCACACGC
1 CCGTGTGATAGAGGCACACGC
*
75527945 TCGTGTG
1 CCGTGTG
75527952 GTTTAGGGAC
Statistics
Matches: 38, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.20, C:0.26, G:0.36, T:0.19
Consensus pattern (21 bp):
CCGTGTGATAGAGGCACACGC
Found at i:75527929 original size:42 final size:42
Alignment explanation
Indices: 75527882--75527970 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
75527872 CAGTACATGG
*
75527882 CCGTGTGATAGAGGCACACGCCCGTGTGGTTCAGGGACACGA
1 CCGTGTGATAGAGGCACACGCCCGTGTGGTTCAGGGACACAA
* *
75527924 CCGTGTGATAGAGGCACACGCTCGTGTGGTTTAGGGACACAA
1 CCGTGTGATAGAGGCACACGCCCGTGTGGTTCAGGGACACAA
75527966 CCGTG
1 CCGTG
75527971 AGAACAGGCC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.21, C:0.25, G:0.35, T:0.19
Consensus pattern (42 bp):
CCGTGTGATAGAGGCACACGCCCGTGTGGTTCAGGGACACAA
Found at i:75527963 original size:21 final size:20
Alignment explanation
Indices: 75527897--75527963 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 20
75527887 TGATAGAGGC
75527897 ACACGCCCGTGTGGTTCAGGG
1 ACACG-CCGTGTGGTTCAGGG
* ** *
75527918 ACACGACCGTGTGATAGAGGC
1 ACACG-CCGTGTGGTTCAGGG
*
75527939 ACACGCTCGTGTGGTTTAGGG
1 ACACGC-CGTGTGGTTCAGGG
75527960 ACAC
1 ACAC
75527964 AACCGTGAGA
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
20 1 0.03
21 35 0.97
ACGTcount: A:0.21, C:0.25, G:0.34, T:0.19
Consensus pattern (20 bp):
ACACGCCGTGTGGTTCAGGG
Found at i:75527970 original size:21 final size:20
Alignment explanation
Indices: 75527903--75527970 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 20
75527893 AGGCACACGC
75527903 CCGTGTGGTTCAGGGACACGA
1 CCGTGTGGTTCAGGGACAC-A
* ** * *
75527924 CCGTGTGATAGAGGCACACG
1 CCGTGTGGTTCAGGGACACA
*
75527944 CTCGTGTGGTTTAGGGACACAA
1 C-CGTGTGGTTCAGGGACAC-A
75527966 CCGTG
1 CCGTG
75527971 AGAACAGGCC
Statistics
Matches: 35, Mismatches: 10, Indels: 4
0.71 0.20 0.08
Matches are distributed among these distances:
20 1 0.03
21 33 0.94
22 1 0.03
ACGTcount: A:0.21, C:0.24, G:0.35, T:0.21
Consensus pattern (20 bp):
CCGTGTGGTTCAGGGACACA
Found at i:75528722 original size:25 final size:24
Alignment explanation
Indices: 75528674--75528722 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
75528664 AAAAACGTTC
*
75528674 TAGAAAAACAAAATAAAACCAAAA
1 TAGAAAAACAAAATAAAAACAAAA
* *
75528698 TAGAAAATACCAAATAAAAATAAAA
1 TAGAAAA-ACAAAATAAAAACAAAA
75528723 ATAAGGAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.73, C:0.10, G:0.04, T:0.12
Consensus pattern (24 bp):
TAGAAAAACAAAATAAAAACAAAA
Found at i:75533392 original size:14 final size:14
Alignment explanation
Indices: 75533373--75533402 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
75533363 TAGTCTCTTT
*
75533373 TTCTTTTTCTTTTA
1 TTCTTTTTATTTTA
75533387 TTCTTTTTATTTTA
1 TTCTTTTTATTTTA
75533401 TT
1 TT
75533403 ATTAAACAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.80
Consensus pattern (14 bp):
TTCTTTTTATTTTA
Found at i:75533574 original size:20 final size:21
Alignment explanation
Indices: 75533551--75533594 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
75533541 TATATATTTT
*
75533551 ATATTTATA-ATAATAATATA
1 ATATTAATATATAATAATATA
*
75533571 ATA-TAATATGTAATAATATA
1 ATATTAATATATAATAATATA
75533591 ATAT
1 ATAT
75533595 ATTTACTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (21 bp):
ATATTAATATATAATAATATA
Found at i:75536678 original size:13 final size:13
Alignment explanation
Indices: 75536660--75536684 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75536650 ATTTTCCAAG
75536660 TCATTTTCATTTA
1 TCATTTTCATTTA
75536673 TCATTTTCATTT
1 TCATTTTCATTT
75536685 TGGAGAAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.16, G:0.00, T:0.64
Consensus pattern (13 bp):
TCATTTTCATTTA
Found at i:75536782 original size:50 final size:51
Alignment explanation
Indices: 75536677--75536782 Score: 119
Period size: 50 Copynumber: 2.1 Consensus size: 51
75536667 CATTTATCAT
* ** *
75536677 TTTCATTTTGGAGAAAACCATATTCATTTCCAAATGATTTCATTTCTCCGT
1 TTTCATTTCGGAGAAAACCATAACCATTTCCAAATGATTTCATTTCTCCGA
* *
75536728 TTTCATTTCGGAG-AAACCTTAACCATTTTCAAATG-TTTCATATTTCTCC-A
1 TTTCATTTCGGAGAAAACCATAACCATTTCCAAATGATTTC--ATTTCTCCGA
75536778 TTTCA
1 TTTCA
75536783 CCATATCTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
49 4 0.09
50 23 0.49
51 20 0.43
ACGTcount: A:0.27, C:0.21, G:0.08, T:0.43
Consensus pattern (51 bp):
TTTCATTTCGGAGAAAACCATAACCATTTCCAAATGATTTCATTTCTCCGA
Found at i:75549403 original size:17 final size:18
Alignment explanation
Indices: 75549373--75549407 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
75549363 ATAAGAACTC
*
75549373 AAAAAAGAGAAGAAAAGA
1 AAAAAACAGAAGAAAAGA
75549391 AAAAAACAG-AGAAAAGA
1 AAAAAACAGAAGAAAAGA
75549408 TGGAGATGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.77, C:0.03, G:0.20, T:0.00
Consensus pattern (18 bp):
AAAAAACAGAAGAAAAGA
Found at i:75555975 original size:19 final size:20
Alignment explanation
Indices: 75555937--75555977 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
75555927 CATAAATTAG
*
75555937 ATCGAGCTGAATTTGAACTC
1 ATCGAGCTGAATTCGAACTC
*
75555957 ATCGAGTTG-ATTCGAACTC
1 ATCGAGCTGAATTCGAACTC
75555976 AT
1 AT
75555978 AAAGCTAAGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32
Consensus pattern (20 bp):
ATCGAGCTGAATTCGAACTC
Found at i:75558967 original size:15 final size:16
Alignment explanation
Indices: 75558947--75558985 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
75558937 TTTCTCACAT
75558947 TCTTTTTCTTTT-TCA
1 TCTTTTTCTTTTCTCA
75558962 TCTTTTTCTTTTCTCA
1 TCTTTTTCTTTTCTCA
*
75558978 TTTTTTTC
1 TCTTTTTC
75558986 ACTTTCTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.05, C:0.21, G:0.00, T:0.74
Consensus pattern (16 bp):
TCTTTTTCTTTTCTCA
Found at i:75562345 original size:67 final size:67
Alignment explanation
Indices: 75562273--75562405 Score: 203
Period size: 67 Copynumber: 2.0 Consensus size: 67
75562263 TACTTTTCAA
** *
75562273 AGAGCACACTCCTGCGAACCTCATTTCTTACAGTAGGATTACCAGTCCAAGCTAAATCCCCTGTA
1 AGAGCACACTCCCACGAACCTCATTTCTTACAGCAGGATTACCAGTCCAAGCTAAATCCCCTGTA
75562338 AG
66 AG
* * * *
75562340 AGAGCACACTCCCACGAACCTCATTTCTTACAGCGGGATTACCAGTCTAGGCTAAATTCCCTGTA
1 AGAGCACACTCCCACGAACCTCATTTCTTACAGCAGGATTACCAGTCCAAGCTAAATCCCCTGTA
75562405 A
66 A
75562406 CATATGCTCA
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
67 59 1.00
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (67 bp):
AGAGCACACTCCCACGAACCTCATTTCTTACAGCAGGATTACCAGTCCAAGCTAAATCCCCTGTA
AG
Found at i:75564273 original size:13 final size:13
Alignment explanation
Indices: 75564255--75564279 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75564245 CAAAACATTA
75564255 AAATTTTCTGACG
1 AAATTTTCTGACG
75564268 AAATTTTCTGAC
1 AAATTTTCTGAC
75564280 ACTCCGTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (13 bp):
AAATTTTCTGACG
Found at i:75565211 original size:27 final size:27
Alignment explanation
Indices: 75565164--75565235 Score: 108
Period size: 27 Copynumber: 2.6 Consensus size: 27
75565154 ATATTAAAAT
*
75565164 TATGTAATACGCTAAGACAAATTAATGA
1 TATGTATTA-GCTAAGACAAATTAATGA
75565192 TATGTATTAGCTAAGACAAATTAATGA
1 TATGTATTAGCTAAGACAAATTAATGA
* *
75565219 TGTGTATTAACTAAGAC
1 TATGTATTAGCTAAGAC
75565236 TTATTAAAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 33 0.80
28 8 0.20
ACGTcount: A:0.43, C:0.10, G:0.15, T:0.32
Consensus pattern (27 bp):
TATGTATTAGCTAAGACAAATTAATGA
Found at i:75565774 original size:26 final size:26
Alignment explanation
Indices: 75565729--75565800 Score: 74
Period size: 26 Copynumber: 2.8 Consensus size: 26
75565719 TATCTTCTGG
** *
75565729 AAATTTTACTAGAGGCAAAATCGCCA
1 AAATTTTACTAGAGATAAAATCACCA
* *
75565755 AAATTTTACTAGAGATAAAAGCATCA
1 AAATTTTACTAGAGATAAAATCACCA
* *
75565781 AAATTTTGCT-GGGATAAAAT
1 AAATTTTACTAGAGATAAAAT
75565801 AGGGATAAGA
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
25 8 0.21
26 30 0.79
ACGTcount: A:0.44, C:0.12, G:0.15, T:0.28
Consensus pattern (26 bp):
AAATTTTACTAGAGATAAAATCACCA
Found at i:75587021 original size:15 final size:14
Alignment explanation
Indices: 75587000--75587042 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
75586990 ACTTTTTCTA
75587000 CTCTTTTTCTTTT-
1 CTCTTTTTCTTTTG
*
75587013 CATTCTTTTTATTTTG
1 C--TCTTTTTCTTTTG
75587029 CTCTTTTTCTTTTG
1 CTCTTTTTCTTTTG
75587043 ATCTCTCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
13 1 0.04
14 12 0.48
15 11 0.44
16 1 0.04
ACGTcount: A:0.05, C:0.19, G:0.05, T:0.72
Consensus pattern (14 bp):
CTCTTTTTCTTTTG
Found at i:75590967 original size:10 final size:11
Alignment explanation
Indices: 75590952--75591010 Score: 63
Period size: 10 Copynumber: 5.7 Consensus size: 11
75590942 CCGAACAAAT
75590952 ATAAATAT-AA
1 ATAAATATAAA
*
75590962 ATAAATA-AAT
1 ATAAATATAAA
**
75590972 ATTTATATAAA
1 ATAAATATAAA
75590983 ATAAA-ATAAA
1 ATAAATATAAA
75590993 ATAAA-ATAAA
1 ATAAATATAAA
75591003 ATAAATAT
1 ATAAATAT
75591011 TATATTTAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
10 33 0.82
11 7 0.17
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (11 bp):
ATAAATATAAA
Found at i:75590988 original size:5 final size:5
Alignment explanation
Indices: 75590978--75591007 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
75590968 AAATATTTAT
75590978 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA
75591008 TATTATATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:75590995 original size:37 final size:39
Alignment explanation
Indices: 75590948--75591023 Score: 113
Period size: 37 Copynumber: 2.0 Consensus size: 39
75590938 GTTACCGAAC
75590948 AAATATAAATATAAAT-AAATAAATATT-TATATAAAATA
1 AAATATAAATA-AAATAAAATAAATATTATATATAAAATA
*
75590986 AAATA-AAATAAAATAAAATAAATATTATATTTAAAATA
1 AAATATAAATAAAATAAAATAAATATTATATATAAAATA
75591024 TAGATATGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
36 4 0.11
37 16 0.46
38 15 0.43
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (39 bp):
AAATATAAATAAAATAAAATAAATATTATATATAAAATA
Found at i:75591918 original size:7 final size:7
Alignment explanation
Indices: 75591906--75591990 Score: 52
Period size: 7 Copynumber: 12.4 Consensus size: 7
75591896 AATCCTGAAC
75591906 CCTTAAA
1 CCTTAAA
75591913 CCTTAAA
1 CCTTAAA
* *
75591920 -CATGAA
1 CCTTAAA
*
75591926 CCCTAAA
1 CCTTAAA
75591933 -CTCTAAA
1 CCT-TAAA
* *
75591940 TTCTTGAA
1 -CCTTAAA
75591948 CCTTAAA
1 CCTTAAA
75591955 -CTTAAA
1 CCTTAAA
75591961 CCTTAAA
1 CCTTAAA
*
75591968 TCTTAAA
1 CCTTAAA
* *
75591975 TCTCAAA
1 CCTTAAA
75591982 CC-TAAA
1 CCTTAAA
75591988 CCT
1 CCT
75591991 CAGGGGTTCA
Statistics
Matches: 60, Mismatches: 12, Indels: 12
0.71 0.14 0.14
Matches are distributed among these distances:
6 16 0.27
7 39 0.65
8 3 0.05
9 2 0.03
ACGTcount: A:0.41, C:0.27, G:0.02, T:0.29
Consensus pattern (7 bp):
CCTTAAA
Found at i:75591964 original size:13 final size:13
Alignment explanation
Indices: 75591946--75591990 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
75591936 TAAATTCTTG
75591946 AACCTTAAACTTA
1 AACCTTAAACTTA
75591959 AACCTTAAATCTTA
1 AACCTTAAA-CTTA
* * *
75591973 AATCTCAAACCTA
1 AACCTTAAACTTA
75591986 AACCT
1 AACCT
75591991 CAGGGGTTCA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (13 bp):
AACCTTAAACTTA
Found at i:75592315 original size:24 final size:24
Alignment explanation
Indices: 75592288--75592339 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
75592278 ATAATAATAC
75592288 TTTGTTATCTTTAAAATTTAATGA
1 TTTGTTATCTTTAAAATTTAATGA
75592312 TTTGTTATCTTTAAAATTTAATGA
1 TTTGTTATCTTTAAAATTTAATGA
75592336 TTTG
1 TTTG
75592340 ACACTATTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.31, C:0.04, G:0.10, T:0.56
Consensus pattern (24 bp):
TTTGTTATCTTTAAAATTTAATGA
Found at i:75600860 original size:39 final size:39
Alignment explanation
Indices: 75600806--75600881 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
75600796 CATGATAAAC
* *
75600806 TCTAGTCTTTTTAATAGGCAACAGTTTATTGAAATTAGT
1 TCTAGGCTTTTTAATAGGCAACACTTTATTGAAATTAGT
75600845 TCTAGGCTTTTTAATAGGCAACACTTTATTGAAATTA
1 TCTAGGCTTTTTAATAGGCAACACTTTATTGAAATTA
75600882 ATCATGCTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.42
Consensus pattern (39 bp):
TCTAGGCTTTTTAATAGGCAACACTTTATTGAAATTAGT
Found at i:75603226 original size:3 final size:3
Alignment explanation
Indices: 75603218--75603245 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
75603208 ATTTACTGTT
75603218 GCA GCA GCA GCA GCA GCA GCA GCA GCA G
1 GCA GCA GCA GCA GCA GCA GCA GCA GCA G
75603246 TCTGTTTCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.32, G:0.36, T:0.00
Consensus pattern (3 bp):
GCA
Found at i:75607992 original size:18 final size:18
Alignment explanation
Indices: 75607940--75607992 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
75607930 AAGCTTCAGT
*
75607940 AATGAAAAATGTTTTGGA
1 AATGAATAATGTTTTGGA
* * *
75607958 AACTGAATATTGATTTGTA
1 AA-TGAATAATGTTTTGGA
75607977 AATGAATAATGTTTTG
1 AATGAATAATGTTTTG
75607993 AAAAGGTATG
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
18 14 0.50
19 14 0.50
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.40
Consensus pattern (18 bp):
AATGAATAATGTTTTGGA
Found at i:75615705 original size:53 final size:54
Alignment explanation
Indices: 75615538--75615772 Score: 330
Period size: 53 Copynumber: 4.4 Consensus size: 54
75615528 TTTTACACTA
** * * *
75615538 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTCGATAATTTTACAAAT
* * * * **
75615592 CGAGTGTGTTTCAGTAATTTCACAAATTGAGGGTATTTCGGCAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTCGATAATTTTACAAAT
*
75615646 CGAGGGTATTTCAGTAATTTCA-AAATCGAGGGTATTTCGATAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTCGATAATTTTACAAAT
*
75615699 CAAGGGTATTTCAATAATTTCA-AAATCGAGGGTATTTCGATAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTCGATAATTTTACAAAT
*
75615752 CAAGGGTATTTCAATAATTTC
1 CAAGGGTATTTCAGTAATTTC
75615773 TCTTTATTAT
Statistics
Matches: 165, Mismatches: 16, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
53 100 0.61
54 65 0.39
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (54 bp):
CAAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTCGATAATTTTACAAAT
Found at i:75615771 original size:27 final size:27
Alignment explanation
Indices: 75615514--75615763 Score: 281
Period size: 27 Copynumber: 9.3 Consensus size: 27
75615504 TATCCTATAG
* * * *
75615514 GGGTATGTCGGTCATTTTAC-ACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CGA
* *
75615541 GGGTATTTTGGTAATTTTACAAATCAA
1 GGGTATTTCGGTAATTTTACAAATCGA
75615568 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * * * *
75615595 GTGTGTTTCAGTAATTTCACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
75615622 GGGTATTTCGGCAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
75615649 GGGTATTTCAGTAATTTCA-AAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
75615675 GGGTATTTCGATAATTTTACAAATCAA
1 GGGTATTTCGGTAATTTTACAAATCGA
** *
75615702 GGGTATTTCAATAATTTCA-AAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
75615728 GGGTATTTCGATAATTTTACAAATCAA
1 GGGTATTTCGGTAATTTTACAAATCGA
75615755 GGGTATTTC
1 GGGTATTTC
75615764 AATAATTTCT
Statistics
Matches: 190, Mismatches: 30, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
26 46 0.24
27 142 0.75
28 2 0.01
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.37
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCGA
Found at i:75616132 original size:28 final size:28
Alignment explanation
Indices: 75616088--75616151 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 28
75616078 TGGCCCCTTT
* *
75616088 AGGCCCAATCTCGTTCACATGACCCATC
1 AGGCCCAATCACATTCACATGACCCATC
** *
75616116 AGGCCCAATCACATTCATGTGGCCCATC
1 AGGCCCAATCACATTCACATGACCCATC
*
75616144 AAGCCCAA
1 AGGCCCAA
75616152 CTACTTCCCA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.28, C:0.38, G:0.16, T:0.19
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGACCCATC
Found at i:75617835 original size:18 final size:18
Alignment explanation
Indices: 75617783--75617835 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
75617773 AAGCTTCCGT
*
75617783 AATGAAAAATGTTTTGGA
1 AATGAATAATGTTTTGGA
* *
75617801 AACTGAAT-ATCGATTTGTA
1 AA-TGAATAAT-GTTTTGGA
75617820 AATGAATAATGTTTTG
1 AATGAATAATGTTTTG
75617836 AAAAGGTACG
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
18 14 0.50
19 14 0.50
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.38
Consensus pattern (18 bp):
AATGAATAATGTTTTGGA
Found at i:75620530 original size:6 final size:6
Alignment explanation
Indices: 75620521--75620565 Score: 90
Period size: 6 Copynumber: 7.5 Consensus size: 6
75620511 TAAGTCTAAG
75620521 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAA
75620566 CAAATGGACT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:75623199 original size:43 final size:45
Alignment explanation
Indices: 75623152--75623268 Score: 123
Period size: 45 Copynumber: 2.6 Consensus size: 45
75623142 AATGTCAACG
* * ** *
75623152 TCCCAGACGTGGTCTTACATG-TAA-TGACATATCAATGCCACTA
1 TCCCAGACGTGGTCTTACACGAGAACACACATATCAATGCCAATA
* * * *
75623195 TCCCACACAG-GGTCTTACACGAGAACACACATATCATTGCTAATG
1 TCCCAGAC-GTGGTCTTACACGAGAACACACATATCAATGCCAATA
75623240 TCCCAGACGTGGTCTTACACGAGAACACA
1 TCCCAGACGTGGTCTTACACGAGAACACA
75623269 TATCGGAAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
43 17 0.28
44 4 0.07
45 39 0.65
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (45 bp):
TCCCAGACGTGGTCTTACACGAGAACACACATATCAATGCCAATA
Found at i:75628081 original size:13 final size:13
Alignment explanation
Indices: 75628063--75628089 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
75628053 GAAGTAATCG
75628063 CACACGGGCGTGT
1 CACACGGGCGTGT
75628076 CACACGGGCGTGT
1 CACACGGGCGTGT
75628089 C
1 C
75628090 CCTACCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:75636470 original size:24 final size:22
Alignment explanation
Indices: 75636428--75636471 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
75636418 TTAAAGTGTA
75636428 AATATGAAAAATTTGAAGGACC
1 AATATGAAAAATTTGAAGGACC
*
75636450 AATAGTGAAAATATTTTAAGGA
1 AATA-TGAAAA-ATTTGAAGGA
75636472 TGGAATGATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 6 0.32
24 9 0.47
ACGTcount: A:0.50, C:0.05, G:0.18, T:0.27
Consensus pattern (22 bp):
AATATGAAAAATTTGAAGGACC
Found at i:75638923 original size:46 final size:45
Alignment explanation
Indices: 75638870--75639142 Score: 305
Period size: 46 Copynumber: 5.9 Consensus size: 45
75638860 TTTCTGAAAT
* * *
75638870 GAAATGTGTAAGGCCATGGTTGAAAGATACCATAGCAACATGATA
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATA
*
75638915 GAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATA
1 G-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATA
* * * *
75638961 TGAAATGTGTAAGACCATGGTTGAAAAATACCTTGGCAACGTGGCAT-
1 -GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACAT-G-ATA
* * **
75639008 GAAATGAATAAGACCATGGTTGAAAGATCCCATGGCAACATGACGGG
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGA--TA
* * *
75639055 GAAATGAATAAGACCTTGGTTGAAAGATACCATGGCAACATGACA
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATA
* * * *
75639100 GAAAACGAGTAAGACCATAGTTGAAAGATACTATGGCATCATG
1 G-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
75639143 TCGAAGATAA
Statistics
Matches: 198, Mismatches: 22, Indels: 15
0.84 0.09 0.06
Matches are distributed among these distances:
44 1 0.01
45 3 0.02
46 149 0.75
47 43 0.22
48 2 0.01
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.21
Consensus pattern (45 bp):
GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATA
Found at i:75639113 original size:93 final size:92
Alignment explanation
Indices: 75638878--75639142 Score: 325
Period size: 93 Copynumber: 2.9 Consensus size: 92
75638868 ATGAAATGTG
* * * *
75638878 TAAGGCCATGGTTGAAAGATACCATAGCAACATGATAGAAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATGGTTGAAAGA
* * **
75638943 TACCATGGCAACATGATATGAAATGTG
66 TACCATGGCAACATGAGAGGAAATGAA
* * * * *
75638970 TAAGACCATGGTTGAAAAATACCTTGGCAACGTGGCATG-AAATGAATAAGACCATGGTTGAAAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCATGGTTGAAAG
* *
75639034 ATCCCATGGCAACATGACGGGGAAATGAA
65 ATACCATGGCAACATGA-GAGGAAATGAA
* * *
75639063 TAAGACCTTGGTTGAAAGATACCATGGCAACATGACAGAAAACGAGTAAGACCATAGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATGGTTGAAAGA
* *
75639128 TACTATGGCATCATG
66 TACCATGGCAACATG
75639143 TCGAAGATAA
Statistics
Matches: 144, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
92 70 0.49
93 74 0.51
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (92 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATGGTTGAAAGA
TACCATGGCAACATGAGAGGAAATGAA
Found at i:75639258 original size:26 final size:26
Alignment explanation
Indices: 75639225--75639274 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
75639215 ACCAGATGAC
*
75639225 AAATGGTTATGTGAATTGGTTATACA
1 AAATGGTTATGTGAAATGGTTATACA
* *
75639251 AAATGGTTGTGTGAAATGTTTATA
1 AAATGGTTATGTGAAATGGTTATA
75639275 GGAATTGGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.34, C:0.02, G:0.24, T:0.40
Consensus pattern (26 bp):
AAATGGTTATGTGAAATGGTTATACA
Found at i:75642153 original size:15 final size:15
Alignment explanation
Indices: 75642134--75642173 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
75642124 ATGAATCTTA
*
75642134 AAAAATAAATAGAAAT
1 AAAAATAAAGA-AAAT
*
75642150 AAAAGTAAAGAAAAT
1 AAAAATAAAGAAAAT
75642165 AAAAATAAA
1 AAAAATAAA
75642174 ACGAGTTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (15 bp):
AAAAATAAAGAAAAT
Found at i:75642235 original size:13 final size:13
Alignment explanation
Indices: 75642217--75642243 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
75642207 AACACTGGTC
75642217 TCACACGGCTGTG
1 TCACACGGCTGTG
75642230 TCACACGGCTGTG
1 TCACACGGCTGTG
75642243 T
1 T
75642244 GGGTTACGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.30, G:0.30, T:0.26
Consensus pattern (13 bp):
TCACACGGCTGTG
Found at i:75646084 original size:10 final size:10
Alignment explanation
Indices: 75646069--75646110 Score: 59
Period size: 10 Copynumber: 4.2 Consensus size: 10
75646059 GCTCGTCAAC
75646069 CAATTTTACA
1 CAATTTTACA
75646079 CAA-TTTATCA
1 CAATTTTA-CA
75646089 CAATTTTACA
1 CAATTTTACA
*
75646099 CACTTTTACA
1 CAATTTTACA
75646109 CA
1 CA
75646111 CTTTGTCAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 4 0.14
10 21 0.72
11 4 0.14
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (10 bp):
CAATTTTACA
Found at i:75646980 original size:12 final size:12
Alignment explanation
Indices: 75646965--75646989 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
75646955 AACCAATAAT
75646965 AATAAAGAAATA
1 AATAAAGAAATA
75646977 AATAAAGAAATA
1 AATAAAGAAATA
75646989 A
1 A
75646990 TAATAATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (12 bp):
AATAAAGAAATA
Found at i:75656381 original size:26 final size:26
Alignment explanation
Indices: 75656352--75656402 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
75656342 ATCCAGAAAT
75656352 TCTGCTTGCGCAATCTTTATTAAAAC
1 TCTGCTTGCGCAATCTTTATTAAAAC
* *
75656378 TCTGCTTGCGCAGTTTTTATTAAAA
1 TCTGCTTGCGCAATCTTTATTAAAA
75656403 TAATAATAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.20, G:0.14, T:0.41
Consensus pattern (26 bp):
TCTGCTTGCGCAATCTTTATTAAAAC
Found at i:75665580 original size:43 final size:43
Alignment explanation
Indices: 75665440--75665589 Score: 162
Period size: 43 Copynumber: 3.5 Consensus size: 43
75665430 CGTACAATGA
*
75665440 CAACGTCCCAGACGTGGTCTTACATGTAATCACATATCGATGC
1 CAACGTCCCAGACATGGTCTTACATGTAATCACATATCGATGC
** * * ** * *
75665483 C-ACTGTCTTAGATAGGGTCTTACA-CAAATCAGATA-CGATGT
1 CAAC-GTCCCAGACATGGTCTTACATGTAATCACATATCGATGC
* * *
75665524 CGATGTCCTAGACATGGTCTTACATGTAATCACATATCGATGC
1 CAACGTCCCAGACATGGTCTTACATGTAATCACATATCGATGC
75665567 CAACGTCCCAGACATGGTCTTAC
1 CAACGTCCCAGACATGGTCTTAC
75665590 TTGAGAAAAC
Statistics
Matches: 83, Mismatches: 20, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
41 23 0.28
42 19 0.23
43 41 0.49
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (43 bp):
CAACGTCCCAGACATGGTCTTACATGTAATCACATATCGATGC
Found at i:75666220 original size:19 final size:19
Alignment explanation
Indices: 75666196--75666234 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
75666186 CCAATACAAA
75666196 ACATATCAATCCAAAACAT
1 ACATATCAATCCAAAACAT
*
75666215 ACATATCAATTCAAAACAT
1 ACATATCAATCCAAAACAT
75666234 A
1 A
75666235 TCTTTCATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.54, C:0.23, G:0.00, T:0.23
Consensus pattern (19 bp):
ACATATCAATCCAAAACAT
Found at i:75666938 original size:23 final size:22
Alignment explanation
Indices: 75666912--75666955 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
75666902 GTGATGAGGT
*
75666912 TATCTGGTAAATATGTATGAATC
1 TATCTGGAAAATATGT-TGAATC
*
75666935 TATCTTGAAAATATGTTGAAT
1 TATCTGGAAAATATGTTGAAT
75666956 TGGATTGGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.41
Consensus pattern (22 bp):
TATCTGGAAAATATGTTGAATC
Found at i:75677045 original size:187 final size:187
Alignment explanation
Indices: 75676730--75677096 Score: 617
Period size: 187 Copynumber: 2.0 Consensus size: 187
75676720 CATTTGTTGT
* * * * *
75676730 GGATTCTCTGTAGCTTGTGTGAGTAGCATCGTGAGTCAGTCAAAACTCTGAAATTAACTCGAATG
1 GGATTCTCTATAGCTTGTGTAAGTAGCATCATGAGCCAGTCAAAACTATGAAATTAACTCGAATG
* *
75676795 AATGATACTATCTGATTACTTGAGATTAGATCTTATTAATTCGACGATGGAGAATGTGATGTGAA
66 AATGATACTATCTGATTACCTGAGATTAGATCTTATTAATGCGACGATGGAGAATGTGATGTGAA
*
75676860 TTAATGCACTATGTAATTCTCACCTATTGTGAGTTATTATTGATAGGAATCTATTGC
131 TAAATGCACTATGTAATTCTCACCTATTGTGAGTTATTATTGATAGGAATCTATTGC
* *
75676917 GGATTCTTTATAGCTTGTGTAAGTAGCATCATGAGCCGGTCAAAACTATGAAATTAACTCGAATG
1 GGATTCTCTATAGCTTGTGTAAGTAGCATCATGAGCCAGTCAAAACTATGAAATTAACTCGAATG
*
75676982 AATGATACTATCTGATTACCTGAGATTAGATCTTATTAATGCGACGATTGAGAATGTGATGTGAA
66 AATGATACTATCTGATTACCTGAGATTAGATCTTATTAATGCGACGATGGAGAATGTGATGTGAA
* *
75677047 TAAATGCACTGTGTAATTCTCACCTATTGTGAGTTGTTATTGATAGGAAT
131 TAAATGCACTATGTAATTCTCACCTATTGTGAGTTATTATTGATAGGAAT
75677097 TCTGATAATA
Statistics
Matches: 167, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
187 167 1.00
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.35
Consensus pattern (187 bp):
GGATTCTCTATAGCTTGTGTAAGTAGCATCATGAGCCAGTCAAAACTATGAAATTAACTCGAATG
AATGATACTATCTGATTACCTGAGATTAGATCTTATTAATGCGACGATGGAGAATGTGATGTGAA
TAAATGCACTATGTAATTCTCACCTATTGTGAGTTATTATTGATAGGAATCTATTGC
Found at i:75696600 original size:14 final size:14
Alignment explanation
Indices: 75696583--75696611 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
75696573 ATAGGAGAAG
75696583 GGACAAGGATAAAA
1 GGACAAGGATAAAA
75696597 GGACAAGGATAAAA
1 GGACAAGGATAAAA
75696611 G
1 G
75696612 CTCTAGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.55, C:0.07, G:0.31, T:0.07
Consensus pattern (14 bp):
GGACAAGGATAAAA
Found at i:75702059 original size:22 final size:22
Alignment explanation
Indices: 75702029--75702074 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
75702019 TGTTACAAGG
*
75702029 CTATCCGTCATTTTGGTTTGCA
1 CTATCCGTCATTTTGATTTGCA
*
75702051 CTATTCGTCATTTTGATTTGCA
1 CTATCCGTCATTTTGATTTGCA
75702073 CT
1 CT
75702075 TTGGACTGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.15, C:0.22, G:0.15, T:0.48
Consensus pattern (22 bp):
CTATCCGTCATTTTGATTTGCA
Found at i:75704359 original size:28 final size:28
Alignment explanation
Indices: 75704328--75704412 Score: 107
Period size: 28 Copynumber: 3.0 Consensus size: 28
75704318 CTCCACTTTA
* * * *
75704328 GCTTGCACTGTCCATCATTTTGGCTTGT
1 GCTTGGACTATCCGTCATTTTGGCTTGC
75704356 GCTTTGGACTATCCGTCATTTTGGCTTGC
1 GC-TTGGACTATCCGTCATTTTGGCTTGC
* *
75704385 ACTTGGACTATCCGTCACTTTGGCTTGC
1 GCTTGGACTATCCGTCATTTTGGCTTGC
75704413 ATTGTCCACC
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
28 27 0.54
29 23 0.46
ACGTcount: A:0.12, C:0.26, G:0.22, T:0.40
Consensus pattern (28 bp):
GCTTGGACTATCCGTCATTTTGGCTTGC
Found at i:75704375 original size:29 final size:28
Alignment explanation
Indices: 75704342--75704413 Score: 108
Period size: 28 Copynumber: 2.5 Consensus size: 28
75704332 GCACTGTCCA
**
75704342 TCATTTTGGCTTGTGCTTTGGACTATCCG
1 TCATTTTGGCTTGCAC-TTGGACTATCCG
75704371 TCATTTTGGCTTGCACTTGGACTATCCG
1 TCATTTTGGCTTGCACTTGGACTATCCG
*
75704399 TCACTTTGGCTTGCA
1 TCATTTTGGCTTGCA
75704414 TTGTCCACCA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 26 0.65
29 14 0.35
ACGTcount: A:0.12, C:0.24, G:0.22, T:0.42
Consensus pattern (28 bp):
TCATTTTGGCTTGCACTTGGACTATCCG
Found at i:75704390 original size:79 final size:79
Alignment explanation
Indices: 75704250--75704438 Score: 211
Period size: 79 Copynumber: 2.4 Consensus size: 79
75704240 TTTGCAAATT
* * * * *
75704250 CTTGGACTGCCCACCATTTTGGCTTGCACTTTGAATTATCTGCCAATTTGACTTGCACTTGGATT
1 CTTGCACTGTCCACCATTTTGGCTTGCACTTTGAACTATCCGCCAATTTGACTTGCACTTGGACT
*
75704315 GTCC-TCCACTTTAG
66 ATCCGT-CACTTTAG
* ** * * * *
75704329 CTTGCACTGTCCATCATTTTGGCTTGTGCTTTGGACTATCCGTCATTTTGGCTTGCACTTGGACT
1 CTTGCACTGTCCACCATTTTGGCTTGCACTTTGAACTATCCGCCAATTTGACTTGCACTTGGACT
*
75704394 ATCCGTCACTTTGG
66 ATCCGTCACTTTAG
* *
75704408 CTTGCATTGTCCACCA-TTTGGCTTACACTTT
1 CTTGCACTGTCCACCATTTTGGCTTGCACTTT
75704439 TTCATCTCGT
Statistics
Matches: 90, Mismatches: 19, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
78 12 0.13
79 77 0.86
80 1 0.01
ACGTcount: A:0.15, C:0.26, G:0.19, T:0.40
Consensus pattern (79 bp):
CTTGCACTGTCCACCATTTTGGCTTGCACTTTGAACTATCCGCCAATTTGACTTGCACTTGGACT
ATCCGTCACTTTAG
Found at i:75705049 original size:24 final size:24
Alignment explanation
Indices: 75705019--75705068 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
75705009 ACTATCATTG
* *
75705019 TTAACCTTCTAATTTAGATAACCA
1 TTAACCTCCTAATCTAGATAACCA
75705043 TTAACCTCCTAATCTAGATAACCA
1 TTAACCTCCTAATCTAGATAACCA
75705067 TT
1 TT
75705069 CTCCTTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.36, C:0.24, G:0.04, T:0.36
Consensus pattern (24 bp):
TTAACCTCCTAATCTAGATAACCA
Found at i:75705081 original size:21 final size:22
Alignment explanation
Indices: 75705027--75705081 Score: 67
Period size: 24 Copynumber: 2.5 Consensus size: 22
75705017 TGTTAACCTT
75705027 CTAATTTAGATAACCATTAACCTC
1 CTAATTTAGATAACCATT-A-CTC
*
75705051 CTAATCTAGATAACCATT-CTC
1 CTAATTTAGATAACCATTACTC
*
75705072 CTTATTTAGA
1 CTAATTTAGA
75705082 AAAATGTTAG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 11 0.39
24 17 0.61
ACGTcount: A:0.35, C:0.24, G:0.05, T:0.36
Consensus pattern (22 bp):
CTAATTTAGATAACCATTACTC
Found at i:75706499 original size:12 final size:12
Alignment explanation
Indices: 75706482--75706514 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
75706472 CAGCCCGCCC
75706482 ATATTAATTTTT
1 ATATTAATTTTT
75706494 ATATT-ATTTTT
1 ATATTAATTTTT
75706505 ATA-TAATTTT
1 ATATTAATTTT
75706515 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:75706755 original size:22 final size:22
Alignment explanation
Indices: 75706730--75706772 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
75706720 TATCCAAACA
75706730 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* * *
75706752 ATAATAATAAAATGGTAGCAA
1 ATAACAACAAAATAGTAGCAA
75706773 AATAGTGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:75707124 original size:15 final size:15
Alignment explanation
Indices: 75707080--75707132 Score: 63
Period size: 15 Copynumber: 3.4 Consensus size: 15
75707070 GGGGTTTCTA
75707080 AATTTTTTAATAAAATT
1 AATTTTTT-ATAAAA-T
*
75707097 AATTAGTTT-TAAAAT
1 AATT-TTTTATAAAAT
75707112 AATTTTTTATAAAAT
1 AATTTTTTATAAAAT
75707127 AATTTT
1 AATTTT
75707133 AATTCTATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
14 3 0.09
15 17 0.53
16 5 0.16
17 4 0.12
18 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (15 bp):
AATTTTTTATAAAAT
Found at i:75717031 original size:11 final size:11
Alignment explanation
Indices: 75717017--75717090 Score: 78
Period size: 11 Copynumber: 6.5 Consensus size: 11
75717007 TTTTTATATA
75717017 TTTTATAATTT
1 TTTTATAATTT
75717028 TTTTATATATTAT
1 TTTTATA-ATT-T
*
75717041 TTTTATATATTA
1 TTTTATA-ATTT
*
75717053 TTTTA-ATTTT
1 TTTTATAATTT
75717063 TTTATATAATTT
1 TTT-TATAATTT
*
75717075 TTTTATAATTC
1 TTTTATAATTT
75717086 TTTTA
1 TTTTA
75717091 GATGTAAAGT
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
10 5 0.09
11 22 0.41
12 15 0.28
13 12 0.22
ACGTcount: A:0.28, C:0.01, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTATAATTT
Found at i:75717043 original size:13 final size:13
Alignment explanation
Indices: 75717006--75717056 Score: 67
Period size: 13 Copynumber: 4.3 Consensus size: 13
75716996 TTAGGGTTGG
75717006 TTTTT-TATA-TA
1 TTTTTATATATTA
75717017 -TTTTATA-ATT-
1 TTTTTATATATTA
75717027 TTTTTATATATTA
1 TTTTTATATATTA
75717040 TTTTTATATATTA
1 TTTTTATATATTA
75717053 TTTT
1 TTTT
75717057 AATTTTTTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
10 5 0.14
11 10 0.29
12 3 0.09
13 17 0.49
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTTTATATATTA
Found at i:75717060 original size:34 final size:33
Alignment explanation
Indices: 75717006--75717090 Score: 120
Period size: 34 Copynumber: 2.5 Consensus size: 33
75716996 TTAGGGTTGG
*
75717006 TTTTTTATATATTTTATAATTTTTTTATAT-AT
1 TTTTTTATATATTTTTTAATTTTTTTATATAAT
75717038 TATTTTTATATATTATTTTAATTTTTTTATATAAT
1 T-TTTTTATATATT-TTTTAATTTTTTTATATAAT
75717073 TTTTTTATA-ATTCTTTTA
1 TTTTTTATATATT-TTTTA
75717091 GATGTAAAGT
Statistics
Matches: 48, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
32 1 0.02
33 20 0.42
34 24 0.50
35 3 0.06
ACGTcount: A:0.28, C:0.01, G:0.00, T:0.71
Consensus pattern (33 bp):
TTTTTTATATATTTTTTAATTTTTTTATATAAT
Found at i:75717089 original size:13 final size:13
Alignment explanation
Indices: 75717020--75717081 Score: 64
Period size: 13 Copynumber: 5.2 Consensus size: 13
75717010 TTATATATTT
75717020 TATAATTTTTTTA
1 TATAATTTTTTTA
75717033 TAT-ATTATTTTTA
1 TATAATT-TTTTTA
*
75717046 TAT-A--TTATT-
1 TATAATTTTTTTA
75717055 T-TAATTTTTTTA
1 TATAATTTTTTTA
75717067 TATAATTTTTTTA
1 TATAATTTTTTTA
75717080 TA
1 TA
75717082 ATTCTTTTAG
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
8 1 0.02
9 2 0.05
10 4 0.10
11 4 0.10
12 4 0.10
13 26 0.63
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
TATAATTTTTTTA
Found at i:75720487 original size:23 final size:23
Alignment explanation
Indices: 75720461--75720535 Score: 95
Period size: 21 Copynumber: 3.4 Consensus size: 23
75720451 CAGACACTTT
75720461 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTATTTCAGGCACCTCG
75720484 TGTGTCGTA--TCAGGCACCTCG
1 TGTGTCGTATTTCAGGCACCTCG
* **
75720505 TGTGTCGT-TTT-AGGCACTTTA
1 TGTGTCGTATTTCAGGCACCTCG
75720526 TGTGTCGTAT
1 TGTGTCGTAT
75720536 ACTGATCAGG
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
21 35 0.76
22 2 0.04
23 9 0.20
ACGTcount: A:0.13, C:0.21, G:0.27, T:0.39
Consensus pattern (23 bp):
TGTGTCGTATTTCAGGCACCTCG
Found at i:75730627 original size:16 final size:16
Alignment explanation
Indices: 75730595--75730658 Score: 51
Period size: 16 Copynumber: 4.0 Consensus size: 16
75730585 GGGGATTGGG
* *
75730595 GAAAGAAAAAAATAGA
1 GAAAGAAAAAGAGAGA
75730611 GAAAGAAAAAGAGAGA
1 GAAAGAAAAAGAGAGA
* *
75730627 GGAAA-AAGAAG-GAAAA
1 -GAAAGAAAAAGAG-AGA
*
75730643 GAAAGAAACAGAGAGA
1 GAAAGAAAAAGAGAGA
75730659 AATCTAAAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
15 5 0.14
16 27 0.73
17 5 0.14
ACGTcount: A:0.69, C:0.02, G:0.28, T:0.02
Consensus pattern (16 bp):
GAAAGAAAAAGAGAGA
Found at i:75730752 original size:21 final size:21
Alignment explanation
Indices: 75730717--75730768 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
75730707 ATTTATTTTA
**
75730717 TATATTTTATTATTTTCATAT
1 TATATTTTAAAATTTTCATAT
* *
75730738 TATTTTTTAAAATTTTTATAT
1 TATATTTTAAAATTTTCATAT
*
75730759 TGTATTTTAA
1 TATATTTTAA
75730769 TATAAAAATA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (21 bp):
TATATTTTAAAATTTTCATAT
Found at i:75732349 original size:16 final size:16
Alignment explanation
Indices: 75732328--75732364 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
75732318 AGATAGAAAT
75732328 TTCATTTCATATAGTA
1 TTCATTTCATATAGTA
75732344 TTCATTTCATATAGTA
1 TTCATTTCATATAGTA
75732360 TTCAT
1 TTCAT
75732365 ATCAAAAGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.30, C:0.14, G:0.05, T:0.51
Consensus pattern (16 bp):
TTCATTTCATATAGTA
Found at i:75734038 original size:50 final size:49
Alignment explanation
Indices: 75733917--75734103 Score: 216
Period size: 50 Copynumber: 3.8 Consensus size: 49
75733907 TGAGGTCGCA
* * * *
75733917 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT-GATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGACTGTAGGTCACG
**
75733968 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT-AGGTCACG
* * *
75734018 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
* *
75734067 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
75734104 TAGCTTCGGC
Statistics
Matches: 119, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
47 1 0.01
48 4 0.03
49 40 0.34
50 43 0.36
51 31 0.26
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
Found at i:75735988 original size:14 final size:14
Alignment explanation
Indices: 75735948--75735977 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
75735938 TTAAATTGTT
75735948 TGGACTGAATTATG
1 TGGACTGAATTATG
75735962 TGGACTGAATTATG
1 TGGACTGAATTATG
75735976 TG
1 TG
75735978 ATTGTAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.07, G:0.30, T:0.37
Consensus pattern (14 bp):
TGGACTGAATTATG
Found at i:75737134 original size:15 final size:15
Alignment explanation
Indices: 75737114--75737178 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
75737104 GTATCTTGGG
75737114 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
75737129 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
75737144 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
75737159 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
75737173 TTTCTT
1 TTTCTT
75737179 GTTATCTTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 12 0.28
15 27 0.63
16 4 0.09
ACGTcount: A:0.09, C:0.14, G:0.14, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:75737146 original size:30 final size:31
Alignment explanation
Indices: 75737110--75737178 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
75737100 TATCGTATCT
75737110 TGGGTTTCTT-TAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCT-TGGATTTCTTTATTC
75737140 TGGGTTT-TTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCTTGGATTTCTTTATTC
*
75737170 -GGTTTTCTT
1 TGGGTTTCTT
75737179 GTTATCTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 7 0.20
30 27 0.77
31 1 0.03
ACGTcount: A:0.09, C:0.13, G:0.17, T:0.61
Consensus pattern (31 bp):
TGGGTTTCTTCTATCTTGGATTTCTTTATTC
Found at i:75755402 original size:26 final size:26
Alignment explanation
Indices: 75755354--75755418 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 26
75755344 CTCATAAGAG
* *
75755354 TTTAAATAGGAAGTTCACAAAGAACT
1 TTTAAACAGGAAGTTCACAAAGAACC
* ** *
75755380 TTTAACCAGGAAGTTCATGAAGAGCC
1 TTTAAACAGGAAGTTCACAAAGAACC
75755406 TTTAAACAGGAAG
1 TTTAAACAGGAAG
75755419 CTTATTGAGC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.42, C:0.14, G:0.20, T:0.25
Consensus pattern (26 bp):
TTTAAACAGGAAGTTCACAAAGAACC
Found at i:75767427 original size:26 final size:26
Alignment explanation
Indices: 75767379--75767443 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 26
75767369 CTCATAAGAG
* *
75767379 TTTAAATAGGAAGTTCACAAAGAACT
1 TTTAAACAGGAAGTTCACAAAGAACC
* ** *
75767405 TTTAACCAGGAAGTTCATGAAGAGCC
1 TTTAAACAGGAAGTTCACAAAGAACC
75767431 TTTAAACAGGAAG
1 TTTAAACAGGAAG
75767444 CTTATTGAGC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.42, C:0.14, G:0.20, T:0.25
Consensus pattern (26 bp):
TTTAAACAGGAAGTTCACAAAGAACC
Found at i:75771387 original size:79 final size:82
Alignment explanation
Indices: 75771276--75771460 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
75771266 GCTACTCGTT
* *
75771276 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
75771339 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
75771356 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
75771419 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
75771436 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75771461 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:75771460 original size:40 final size:40
Alignment explanation
Indices: 75771257--75771460 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
75771247 CGGAATTTAA
** *
75771257 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
75771297 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
75771337 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
75771376 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
75771416 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
75771456 CCGGA
1 CCGGA
75771461 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:75779283 original size:79 final size:82
Alignment explanation
Indices: 75779172--75779356 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
75779162 GCTACTCGTT
* * *
75779172 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
75779235 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
75779252 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
75779315 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
75779332 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75779357 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:75779356 original size:40 final size:40
Alignment explanation
Indices: 75779153--75779356 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
75779143 CGGAATTTAA
** *
75779153 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
75779193 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
75779233 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
75779272 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
75779312 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
75779352 CCGGA
1 CCGGA
75779357 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:75785409 original size:22 final size:21
Alignment explanation
Indices: 75785380--75785420 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
75785370 TAAAATTTCC
* *
75785380 TTTCCTCAATTTTCACGTTCT
1 TTTCCTCAACTTCCACGTTCT
75785401 TTTCTCTCAACTTCCACGTT
1 TTTC-CTCAACTTCCACGTT
75785421 TTCTTTCTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.15, C:0.32, G:0.05, T:0.49
Consensus pattern (21 bp):
TTTCCTCAACTTCCACGTTCT
Found at i:75789897 original size:15 final size:15
Alignment explanation
Indices: 75789877--75789924 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
75789867 GAAGGCTTTA
75789877 AATCAATTTGACTGG
1 AATCAATTTGACTGG
* * *
75789892 AATCAAATCT-AATTG
1 AATC-AATTTGACTGG
75789907 AATCAATTTGACTGG
1 AATCAATTTGACTGG
75789922 AAT
1 AAT
75789925 TATTATTTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
14 4 0.16
15 17 0.68
16 4 0.16
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (15 bp):
AATCAATTTGACTGG
Found at i:75796727 original size:23 final size:23
Alignment explanation
Indices: 75796695--75796738 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
75796685 AAAATTTCAC
* *
75796695 ACATGTAATTTCACATATAATAG
1 ACATGAAATTTAACATATAATAG
*
75796718 ACATGAAATTTAACATTTAAT
1 ACATGAAATTTAACATATAAT
75796739 TATTTTTGCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.36
Consensus pattern (23 bp):
ACATGAAATTTAACATATAATAG
Found at i:75808776 original size:14 final size:14
Alignment explanation
Indices: 75808757--75808785 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
75808747 TTGAACAAAC
75808757 TTTGTAATATAAAT
1 TTTGTAATATAAAT
75808771 TTTGTAATATAAAT
1 TTTGTAATATAAAT
75808785 T
1 T
75808786 AAATACATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (14 bp):
TTTGTAATATAAAT
Found at i:75815319 original size:48 final size:48
Alignment explanation
Indices: 75815214--75815425 Score: 213
Period size: 48 Copynumber: 4.5 Consensus size: 48
75815204 TATGTGTGCT
** * *
75815214 AGTGTAAGACATGTCTGGGACATGCATCGGCCA-T-A-TTATGA-GAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-AACATTGAGATAT-ACAAGCC
* *
75815260 AGTGTAAGACATGTTTGGGACATGCATCAACATTGAGATATACTAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAACATTGAGATATACAAGCC
* ** * *
75815308 AGTGTAAGACATGTCTGGGACATGCATCGACATTGAGA-CGA-GAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAACATTGAGATATACAAGCC
* * *
75815354 AGTGTAAGACATGTCTGGGACATGCATCAGGC-TCGAGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCA-ACATTGAGATATACAAGCC
*
75815402 AGTGTAAGACCTGTCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
75815426 GCGTCAGCTT
Statistics
Matches: 141, Mismatches: 18, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
45 2 0.01
46 64 0.45
47 5 0.04
48 70 0.50
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATCAACATTGAGATATACAAGCC
Found at i:75815363 original size:94 final size:94
Alignment explanation
Indices: 75815214--75815615 Score: 288
Period size: 94 Copynumber: 4.3 Consensus size: 94
75815204 TATGTGTGCT
* * * *
75815214 AGTGTAAGACATGTCTGGGACATGCATCGGCCATATTATGAGAGCCAGTGTAAGACATGTTTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGACATATGACGAGAGCCAGTGTAAGACATGTCTGGG
* *
75815279 ACATGCATCA-ACATTGAGATATACTAGCC
66 ACATGCATCAGAC-TCGAGATATACAAGCC
*
75815308 AGTGTAAGACATGTCTGGGACATGCATC-GACAT-TGAGACGAGAGCTAGTGTAAGACATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGACATAT--GACGAGAGCCAGTGTAAGACATGTCTG
* *
75815371 GGACATGCATCAGGCTCGAGATATACAAGCT
64 GGACATGCATCAGACTCGAGATATACAAGCC
* * * ** * * *
75815402 AGTGTAAGACCTGTCTGGGACATGGCGTCAG-C-T-TGTTGAGTGTCAGTGTAAGACCTGTCTGG
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGACATATGACGAGAGCCAGTGTAAGACATGTCTGG
* * * *
75815464 GACATGGCATC-GACACTGATAGATGA-GAGCC
65 GACAT-GCATCAGACTC-GAGATAT-ACAAGCC
* * * * ** *
75815495 AGTGTAAGACCTGTCTGGGATACA-GCATCGGCCTCGATAT-ATGAAAGTTAGTGTAAGACCTGT
1 AGTGTAAGACATGTCTGGG--ACATGCATCGG--AC-ATATGACGAGAGCCAGTGTAAGACATGT
** * * *
75815558 CTGGGACATGACATC-GACT-TTGATGTGCTAGCC
61 CTGGGACATG-CATCAGACTCGAGATATACAAGCC
*
75815591 AGTGTAAGACCATGTTTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
75815616 GCGTCGGCAT
Statistics
Matches: 249, Mismatches: 39, Indels: 38
0.76 0.12 0.12
Matches are distributed among these distances:
92 31 0.12
93 41 0.16
94 101 0.41
95 12 0.05
96 18 0.07
97 9 0.04
98 36 0.14
99 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGACATATGACGAGAGCCAGTGTAAGACATGTCTGGG
ACATGCATCAGACTCGAGATATACAAGCC
Found at i:75815523 original size:49 final size:49
Alignment explanation
Indices: 75815445--75815613 Score: 157
Period size: 49 Copynumber: 3.5 Consensus size: 49
75815435 TGTTGAGTGT
** *
75815445 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACT-GATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACACAGCATCGAC-CTCGATAGATGAAAGC
* * * *
75815494 CAGTGTAAGACCTGTCTGGGATACAGCATCGGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACACAGCATCGACCTCGATAGATGAAAGC
* * * * **
75815543 TAGTGTAAGACCTGTCTGGGACA-TGACATCGACTTTGAT-G-TGCTAGC
1 CAGTGTAAGACCTGTCTGGGACACAG-CATCGACCTCGATAGATGAAAGC
*
75815590 CAGTGTAAGACCATGTTTGGGACA
1 CAGTGTAAGACC-TGTCTGGGACA
75815614 TGGCGTCGGC
Statistics
Matches: 98, Mismatches: 19, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
47 15 0.15
48 13 0.13
49 70 0.71
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACACAGCATCGACCTCGATAGATGAAAGC
Found at i:75815531 original size:142 final size:138
Alignment explanation
Indices: 75815214--75815567 Score: 382
Period size: 142 Copynumber: 2.5 Consensus size: 138
75815204 TATGTGTGCT
* * * * *
75815214 AGTGTAAGACATGTCTGGGACATGCATC-GGC-C-ATATTATGAGAGCCAGTGTAAGACATGTTT
1 AGTGTAAGACATGTCTGGGACATGCATCAGGCTCGAGA-TATGAAAGCTAGTGTAAGACCTGTCT
* * * *
75815276 GGGACAT-GCATCAACATTGAGATAT-ACTAGCCAGTGTAAGACATGTCTGGGACATGCATCGAC
65 GGGACATGGCGTCAGC-TT--G-T-TGAGT-GTCAGTGTAAGACATGTCTGGGACATGCATCGAC
* *
75815339 ATTGAGACGAGAGCT
124 ACTGAGACGAGAGCC
75815354 AGTGTAAGACATGTCTGGGACATGCATCAGGCTCGAGATAT-ACAAGCTAGTGTAAGACCTGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGGCTCGAGATATGA-AAGCTAGTGTAAGACCTGTCT
*
75815418 GGGACATGGCGTCAGCTTGTTGAGTGTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACTGA
65 GGGACATGGCGTCAGCTTGTTGAGTGTCAGTGTAAGACATGTCTGGGACAT-GCATCGACACTG-
*
75815483 TAGATGAGAGCC
128 -AGACGAGAGCC
* * *
75815495 AGTGTAAGACCTGTCTGGGATACA-GCATC-GGCCTCGATATATGAAAGTTAGTGTAAGACCTGT
1 AGTGTAAGACATGTCTGGG--ACATGCATCAGG-CTCGAGATATGAAAGCTAGTGTAAGACCTGT
75815558 CTGGGACATG
63 CTGGGACATG
75815568 ACATCGACTT
Statistics
Matches: 185, Mismatches: 16, Indels: 24
0.82 0.07 0.11
Matches are distributed among these distances:
138 25 0.14
139 14 0.08
140 29 0.16
141 33 0.18
142 72 0.39
143 12 0.06
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (138 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGGCTCGAGATATGAAAGCTAGTGTAAGACCTGTCTG
GGACATGGCGTCAGCTTGTTGAGTGTCAGTGTAAGACATGTCTGGGACATGCATCGACACTGAGA
CGAGAGCC
Found at i:75816767 original size:28 final size:28
Alignment explanation
Indices: 75816727--75816781 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 28
75816717 CACGGGCTAA
75816727 GACACGGGC-GTGTCATGGCCGTGTGAGG
1 GACACGGGCGGTGTCA-GGCCGTGTGAGG
75816755 GACACGGGCGTGTGTCAGGCCGTGTGA
1 GACACGGGCG-GTGTCAGGCCGTGTGA
75816782 AAACCCCTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
28 9 0.36
29 10 0.40
30 6 0.24
ACGTcount: A:0.15, C:0.22, G:0.45, T:0.18
Consensus pattern (28 bp):
GACACGGGCGGTGTCAGGCCGTGTGAGG
Found at i:75818203 original size:21 final size:20
Alignment explanation
Indices: 75818179--75818220 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 20
75818169 GACTAAATCG
75818179 AAAAC-TCAAAGAATTTTTCAA
1 AAAACATCAAA-AA-TTTTCAA
*
75818200 AAAACATTAAAAATTTTCAA
1 AAAACATCAAAAATTTTCAA
75818220 A
1 A
75818221 GCTGCAGGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 8 0.42
21 7 0.37
22 4 0.21
ACGTcount: A:0.57, C:0.12, G:0.02, T:0.29
Consensus pattern (20 bp):
AAAACATCAAAAATTTTCAA
Found at i:75821277 original size:22 final size:22
Alignment explanation
Indices: 75821251--75821292 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
75821241 TTGCATTTTG
75821251 GATGA-AATAGAGTCAACATCAT
1 GATGAGAA-AGAGTCAACATCAT
75821273 GATGAGAAAGAGTCAACATC
1 GATGAGAAAGAGTCAACATC
75821293 TCGACGACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.45, C:0.14, G:0.21, T:0.19
Consensus pattern (22 bp):
GATGAGAAAGAGTCAACATCAT
Found at i:75822889 original size:20 final size:20
Alignment explanation
Indices: 75822858--75822910 Score: 81
Period size: 19 Copynumber: 2.6 Consensus size: 20
75822848 AAAAATATAA
*
75822858 ATTTTGGAATTTTTATAAATT
1 ATTTT-GAATTTTTAAAAATT
75822879 ATTTTGAA-TTTTAAAAATT
1 ATTTTGAATTTTTAAAAATT
75822898 ATTTTGAATTTTT
1 ATTTTGAATTTTT
75822911 TTAATTGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 18 0.60
20 7 0.23
21 5 0.17
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (20 bp):
ATTTTGAATTTTTAAAAATT
Found at i:75822916 original size:19 final size:19
Alignment explanation
Indices: 75822858--75822916 Score: 73
Period size: 19 Copynumber: 3.0 Consensus size: 19
75822848 AAAAATATAA
75822858 ATTTTGGAATTTTTATAAATT
1 ATTTT-GAATTTTT-TAAATT
**
75822879 ATTTTGAATTTTAAAAATT
1 ATTTTGAATTTTTTAAATT
*
75822898 ATTTTGAATTTTTTTAATT
1 ATTTTGAATTTTTTAAATT
75822917 GTTGTTGAGA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
19 21 0.64
20 7 0.21
21 5 0.15
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (19 bp):
ATTTTGAATTTTTTAAATT
Found at i:75835053 original size:9 final size:9
Alignment explanation
Indices: 75835039--75835155 Score: 108
Period size: 9 Copynumber: 12.3 Consensus size: 9
75835029 ATGTATTAGT
75835039 TAAGTTATG
1 TAAGTTATG
75835048 TAAGTTGTTATG
1 TAA---GTTATG
*
75835060 TACGTTATG
1 TAAGTTATG
*
75835069 TGAGTTATG
1 TAAGTTATG
*
75835078 TAAATTATG
1 TAAGTTATG
75835087 TAAGTTATG
1 TAAGTTATG
*
75835096 TGAGTTATG
1 TAAGTTATG
75835105 TAAGTTGTTATG
1 TAA---GTTATG
*
75835117 TAAATTATG
1 TAAGTTATG
*
75835126 TAAGTTATA
1 TAAGTTATG
* *
75835135 TGAGTTATA
1 TAAGTTATG
75835144 TAAGTTATG
1 TAAGTTATG
75835153 TAA
1 TAA
75835156 TTTTTTAAGA
Statistics
Matches: 88, Mismatches: 14, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
9 71 0.81
12 17 0.19
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:75835086 original size:39 final size:38
Alignment explanation
Indices: 75835043--75835155 Score: 110
Period size: 39 Copynumber: 3.0 Consensus size: 38
75835033 ATTAGTTAAG
75835043 TTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAA
1 TTATGTAAGTTGTTATGTA-GTTATGTGAGTTATGTAAA
*
75835082 TTATGTAA---GTTATGTGAGTTATGTAAGTTGTTATGTAAA
1 TTATGTAAGTTGTTATGT-AGTTATGT--G-AGTTATGTAAA
* * *
75835121 TTATGTAAGTT-ATATG-AGTTATATAAGTTATGTAA
1 TTATGTAAGTTGTTATGTAGTTATGTGAGTTATGTAA
75835156 TTTTTTAAGA
Statistics
Matches: 62, Mismatches: 5, Indels: 17
0.74 0.06 0.20
Matches are distributed among these distances:
36 23 0.37
37 1 0.02
38 1 0.02
39 33 0.53
41 4 0.06
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.46
Consensus pattern (38 bp):
TTATGTAAGTTGTTATGTAGTTATGTGAGTTATGTAAA
Found at i:75835132 original size:57 final size:57
Alignment explanation
Indices: 75835041--75835153 Score: 163
Period size: 57 Copynumber: 2.0 Consensus size: 57
75835031 GTATTAGTTA
** * * *
75835041 AGTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATGTG
1 AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATATAAGTTATGTG
* *
75835098 AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATGAGTTATATAAGTTATGT
1 AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATATAAGTTATGT
75835154 AATTTTTTAA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.46
Consensus pattern (57 bp):
AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATATAAGTTATGTG
Found at i:75836415 original size:17 final size:17
Alignment explanation
Indices: 75836393--75836434 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
75836383 CCTAACACAT
75836393 GAATTTAGATTTTTGTC
1 GAATTTAGATTTTTGTC
75836410 GAATTTAGATTTTTGTC
1 GAATTTAGATTTTTGTC
*
75836427 AAATTTAG
1 GAATTTAG
75836435 TACTTAAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.29, C:0.05, G:0.17, T:0.50
Consensus pattern (17 bp):
GAATTTAGATTTTTGTC
Found at i:75838240 original size:24 final size:24
Alignment explanation
Indices: 75838208--75838277 Score: 72
Period size: 24 Copynumber: 2.9 Consensus size: 24
75838198 CTAACCAAAG
75838208 CATATTATAATACAATTTTCATAA
1 CATATTATAATACAATTTTCATAA
**
75838232 CATATTATAAATA-AGATAGT-ATAA
1 CATATTAT-AATACA-ATTTTCATAA
*
75838256 CATTATTATAATACGATTTTCA
1 CA-TATTATAATACAATTTTCA
75838278 CAGTCACAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 9
0.72 0.10 0.18
Matches are distributed among these distances:
24 22 0.61
25 14 0.39
ACGTcount: A:0.46, C:0.10, G:0.04, T:0.40
Consensus pattern (24 bp):
CATATTATAATACAATTTTCATAA
Found at i:75838887 original size:24 final size:24
Alignment explanation
Indices: 75838855--75838900 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
75838845 TTGTATTTGT
75838855 AAACAGAGACTTAGAAATTAAAAG
1 AAACAGAGACTTAGAAATTAAAAG
75838879 AAACAGAGACTTAGAAATTAAA
1 AAACAGAGACTTAGAAATTAAA
75838901 GTTACCTGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.59, C:0.09, G:0.15, T:0.17
Consensus pattern (24 bp):
AAACAGAGACTTAGAAATTAAAAG
Found at i:75839633 original size:42 final size:41
Alignment explanation
Indices: 75839548--75839639 Score: 114
Period size: 42 Copynumber: 2.2 Consensus size: 41
75839538 AAATATTTAC
** *
75839548 GGCGTTTTTTTTTAAAACGCCGGTATAGGTCAACTTTTAGT
1 GGCGTTTTTTTTTAAAACGCCACTATAGCTCAACTTTTAGT
* *
75839589 GGCGTTTTTTTATTATAAACGCCACTATAGCTC-ATTTTTTGT
1 GGCGTTTTTTT-TTA-AAACGCCACTATAGCTCAACTTTTAGT
75839631 GGCGTTTTT
1 GGCGTTTTT
75839640 GAAAAAAACA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
41 11 0.25
42 19 0.43
43 14 0.32
ACGTcount: A:0.20, C:0.15, G:0.20, T:0.46
Consensus pattern (41 bp):
GGCGTTTTTTTTTAAAACGCCACTATAGCTCAACTTTTAGT
Found at i:75839865 original size:14 final size:14
Alignment explanation
Indices: 75839848--75839885 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
75839838 TCCAAATCCC
75839848 AAACCCCAAACTAT
1 AAACCCCAAACTAT
*
75839862 AAACCCCATACTAT
1 AAACCCCAAACTAT
*
75839876 AAACCACAAA
1 AAACCCCAAA
75839886 ACCCAATCCC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.53, C:0.34, G:0.00, T:0.13
Consensus pattern (14 bp):
AAACCCCAAACTAT
Found at i:75840281 original size:15 final size:14
Alignment explanation
Indices: 75840256--75840290 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
75840246 AACCATTAAC
75840256 CCTTAACCCCTAAA
1 CCTTAACCCCTAAA
*
75840270 CTCTTAATCCCTAAA
1 C-CTTAACCCCTAAA
75840285 CCTTAA
1 CCTTAA
75840291 ACCATTAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.34, C:0.37, G:0.00, T:0.29
Consensus pattern (14 bp):
CCTTAACCCCTAAA
Found at i:75840365 original size:14 final size:14
Alignment explanation
Indices: 75840330--75840359 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
75840320 AATATCTTAG
75840330 ACCCTAAATAATAA
1 ACCCTAAATAATAA
75840344 ACCCTAAATAATAA
1 ACCCTAAATAATAA
75840358 AC
1 AC
75840360 TTTAAAACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.57, C:0.23, G:0.00, T:0.20
Consensus pattern (14 bp):
ACCCTAAATAATAA
Found at i:75840566 original size:14 final size:13
Alignment explanation
Indices: 75840516--75840562 Score: 58
Period size: 14 Copynumber: 3.5 Consensus size: 13
75840506 ATAAACCTCA
75840516 AACCCTAAATCAT
1 AACCCTAAATCAT
* *
75840529 AAAACATAAATCAT
1 -AACCCTAAATCAT
75840543 CAACCCTAAATCAT
1 -AACCCTAAATCAT
75840557 AACCCT
1 AACCCT
75840563 TAAACCTATA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
13 6 0.21
14 22 0.79
ACGTcount: A:0.49, C:0.30, G:0.00, T:0.21
Consensus pattern (13 bp):
AACCCTAAATCAT
Found at i:75841712 original size:40 final size:41
Alignment explanation
Indices: 75841635--75841740 Score: 117
Period size: 40 Copynumber: 2.6 Consensus size: 41
75841625 GCGTTTTACT
* * * *
75841635 AAAACGCCGCTAAAGGTTGACCT-TTAGCGGCGCTTTTTCA
1 AAAACGCCGCTAAAGCTCGATCTATTAGCAGCGCTTTTTCA
* *
75841675 AAAACGCCGCTAAAGCTCGATCTATT-GCAGCGTTTTTTTA
1 AAAACGCCGCTAAAGCTCGATCTATTAGCAGCGCTTTTTCA
* * *
75841715 AAAACACCGCTAAAACTCCATCTATT
1 AAAACGCCGCTAAAGCTCGATCTATT
75841741 TGATTTTTTC
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
40 54 0.96
41 2 0.04
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.28
Consensus pattern (41 bp):
AAAACGCCGCTAAAGCTCGATCTATTAGCAGCGCTTTTTCA
Found at i:75842189 original size:20 final size:20
Alignment explanation
Indices: 75842160--75842209 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
75842150 TGTGTTTTTG
* *
75842160 GGTGATTATTCGATGTTGGT
1 GGTGAATATTCGATGTTGAT
75842180 GGTGAATATTCGATGTTGAT
1 GGTGAATATTCGATGTTGAT
75842200 GGTGAATATT
1 GGTGAATATT
75842210 ATGCTCCTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.22, C:0.04, G:0.32, T:0.42
Consensus pattern (20 bp):
GGTGAATATTCGATGTTGAT
Found at i:75847000 original size:18 final size:18
Alignment explanation
Indices: 75846977--75847011 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
75846967 ACTACAATGT
75846977 TAATGTATGTGTTGAATA
1 TAATGTATGTGTTGAATA
75846995 TAATGTATGTGTTGAAT
1 TAATGTATGTGTTGAAT
75847012 TTTACTTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (18 bp):
TAATGTATGTGTTGAATA
Found at i:75847286 original size:44 final size:44
Alignment explanation
Indices: 75847151--75847287 Score: 154
Period size: 46 Copynumber: 3.1 Consensus size: 44
75847141 TATTGTAAGC
* ***
75847151 TAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGTAAAC
1 TAGTGTAAGACATGTTTGGGACATGCATCGG-CTACGAGA--TATGT
* *
75847197 CAGTGTAAGACATGTTTGGGACATGCATCGGCTACGAGATGTGT
1 TAGTGTAAGACATGTTTGGGACATGCATCGGCTACGAGATATGT
75847241 TAGTGTAAGACCATGTTTGGGACATGGCATCGGC-AC-AGATATGT
1 TAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCTACGAGATATGT
75847285 TAG
1 TAG
75847288 AACTTGTGTA
Statistics
Matches: 80, Mismatches: 8, Indels: 8
0.83 0.08 0.08
Matches are distributed among these distances:
44 20 0.25
45 18 0.22
46 42 0.52
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.26
Consensus pattern (44 bp):
TAGTGTAAGACATGTTTGGGACATGCATCGGCTACGAGATATGT
Found at i:75855450 original size:30 final size:30
Alignment explanation
Indices: 75855392--75855450 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
75855382 ATTTTCGGGC
* **
75855392 CTAGGGGTAAAATGGTCATTTTGTCAAAGT
1 CTAGGGGCAAAATGGTCATTTTACCAAAGT
75855422 CTAGGGGCAAAATGGTCATTTTACCAAAG
1 CTAGGGGCAAAATGGTCATTTTACCAAAG
75855451 ATATGAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTCATTTTACCAAAGT
Found at i:75864061 original size:54 final size:55
Alignment explanation
Indices: 75863967--75864078 Score: 217
Period size: 54 Copynumber: 2.1 Consensus size: 55
75863957 ATTTGCTTCC
75863967 AATATCTGACACATTCAAAAAAAAACATATTAAATGTTGTTGGAAATAAAATTAA
1 AATATCTGACACATTCAAAAAAAAACATATTAAATGTTGTTGGAAATAAAATTAA
75864022 AATATCTGACACATTC-AAAAAAAACATATTAAATGTTGTTGGAAATAAAATTAA
1 AATATCTGACACATTCAAAAAAAAACATATTAAATGTTGTTGGAAATAAAATTAA
75864076 AAT
1 AAT
75864079 GCAAAAAAAA
Statistics
Matches: 57, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
54 41 0.72
55 16 0.28
ACGTcount: A:0.53, C:0.09, G:0.09, T:0.29
Consensus pattern (55 bp):
AATATCTGACACATTCAAAAAAAAACATATTAAATGTTGTTGGAAATAAAATTAA
Found at i:75864619 original size:50 final size:50
Alignment explanation
Indices: 75864562--75864658 Score: 194
Period size: 50 Copynumber: 1.9 Consensus size: 50
75864552 TCTTTTAATC
75864562 TTTTAATTTGTGTTATTTTTCAAATCGTTCAAAATGGATGAAAAAAGATT
1 TTTTAATTTGTGTTATTTTTCAAATCGTTCAAAATGGATGAAAAAAGATT
75864612 TTTTAATTTGTGTTATTTTTCAAATCGTTCAAAATGGATGAAAAAAG
1 TTTTAATTTGTGTTATTTTTCAAATCGTTCAAAATGGATGAAAAAAG
75864659 TTAAATGTTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.36, C:0.06, G:0.14, T:0.43
Consensus pattern (50 bp):
TTTTAATTTGTGTTATTTTTCAAATCGTTCAAAATGGATGAAAAAAGATT
Found at i:75871629 original size:13 final size:13
Alignment explanation
Indices: 75871611--75871635 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75871601 AAAATAAAAG
75871611 CTTGTAAAAAGTT
1 CTTGTAAAAAGTT
75871624 CTTGTAAAAAGT
1 CTTGTAAAAAGT
75871636 CCAAAAATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (13 bp):
CTTGTAAAAAGTT
Found at i:75873214 original size:15 final size:15
Alignment explanation
Indices: 75873196--75873236 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
75873186 CCTCTATTGT
*
75873196 TTCTTTCTCTAGAGC
1 TTCTTCCTCTAGAGC
75873211 TTCTTCCTCTAGAGC
1 TTCTTCCTCTAGAGC
75873226 TTCTTCCTCTA
1 TTCTTCCTCTA
75873237 TCTATTCTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.12, C:0.32, G:0.10, T:0.46
Consensus pattern (15 bp):
TTCTTCCTCTAGAGC
Found at i:75875342 original size:39 final size:39
Alignment explanation
Indices: 75875290--75875461 Score: 218
Period size: 39 Copynumber: 4.4 Consensus size: 39
75875280 TGTTTTTAAA
* *
75875290 TATTGTGACATATGCTTGAATGTTATGTGTTTATATGAG
1 TATTGTGATATATGCTTGAATGTTATGTGATTATATGAG
* *
75875329 TATTGCGATATATGCTTGAATGTTATGTGATCATATGAG
1 TATTGTGATATATGCTTGAATGTTATGTGATTATATGAG
* * ** * * *
75875368 TATTGTGACATGTGCTTGAACATTATGTAACTATATGGG
1 TATTGTGATATATGCTTGAATGTTATGTGATTATATGAG
* *
75875407 TATTGTGATATATGCTTAAATGTTATGTGATTATATGTG
1 TATTGTGATATATGCTTGAATGTTATGTGATTATATGAG
*
75875446 TAATGTGATATATGCT
1 TATTGTGATATATGCT
75875462 CAAAAGTGAA
Statistics
Matches: 111, Mismatches: 22, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 111 1.00
ACGTcount: A:0.28, C:0.06, G:0.22, T:0.44
Consensus pattern (39 bp):
TATTGTGATATATGCTTGAATGTTATGTGATTATATGAG
Found at i:75876546 original size:47 final size:47
Alignment explanation
Indices: 75876492--75876589 Score: 169
Period size: 47 Copynumber: 2.1 Consensus size: 47
75876482 ATCTTAATAT
*
75876492 TCAGGTTTGGCGACCTAGCTGGGTATAGTGTGTTACATTTGGTGGTA
1 TCAGGTTTAGCGACCTAGCTGGGTATAGTGTGTTACATTTGGTGGTA
* *
75876539 TCAGGTTTAGCGACTTGGCTGGGTATAGTGTGTTACATTTGGTGGTA
1 TCAGGTTTAGCGACCTAGCTGGGTATAGTGTGTTACATTTGGTGGTA
75876586 TCAG
1 TCAG
75876590 AGCCCTAGGT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.17, C:0.12, G:0.34, T:0.37
Consensus pattern (47 bp):
TCAGGTTTAGCGACCTAGCTGGGTATAGTGTGTTACATTTGGTGGTA
Found at i:75876586 original size:22 final size:22
Alignment explanation
Indices: 75876513--75876586 Score: 80
Period size: 22 Copynumber: 3.2 Consensus size: 22
75876503 GACCTAGCTG
75876513 GGTATAGTGTGTTACATTTGGT
1 GGTATAGTGTGTTACATTTGGT
*
75876535 GGTATCAG-GT-TTAGCGACTTGGCT
1 GGTAT-AGTGTGTTA-C-ATTTGG-T
75876559 GGGTATAGTGTGTTACATTTGGT
1 -GGTATAGTGTGTTACATTTGGT
75876582 GGTAT
1 GGTAT
75876587 CAGAGCCCTA
Statistics
Matches: 43, Mismatches: 2, Indels: 14
0.73 0.03 0.24
Matches are distributed among these distances:
21 3 0.07
22 13 0.30
23 8 0.19
24 8 0.19
25 8 0.19
26 3 0.07
ACGTcount: A:0.18, C:0.08, G:0.34, T:0.41
Consensus pattern (22 bp):
GGTATAGTGTGTTACATTTGGT
Found at i:75888888 original size:21 final size:21
Alignment explanation
Indices: 75888864--75888903 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
75888854 AACTTAACCA
75888864 ATAAA-AATAAAACCATAAATC
1 ATAAACAATAAAA-CATAAATC
*
75888885 ATAAACTATAAAACATAAA
1 ATAAACAATAAAACATAAA
75888904 AGTCCAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.20
Consensus pattern (21 bp):
ATAAACAATAAAACATAAATC
Found at i:75889105 original size:33 final size:33
Alignment explanation
Indices: 75889055--75889118 Score: 78
Period size: 32 Copynumber: 1.9 Consensus size: 33
75889045 CAATCATACA
* *
75889055 CAGTCTGGGCCTAAGCCCTTTTTAGTATTAGTGG
1 CAGTCTGGGCCTAAGCCC-ATTAAGTATTAGTGG
75889089 CAGT-TGGGCCCT-AGCCCATTAAGTATTAGT
1 CAGTCTGGG-CCTAAGCCCATTAAGTATTAGT
75889119 ATCAGTCATG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
32 11 0.41
33 9 0.33
34 7 0.26
ACGTcount: A:0.20, C:0.22, G:0.25, T:0.33
Consensus pattern (33 bp):
CAGTCTGGGCCTAAGCCCATTAAGTATTAGTGG
Found at i:75893567 original size:11 final size:11
Alignment explanation
Indices: 75893553--75893584 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
75893543 GTGTATGATG
75893553 TGTGAAATATA
1 TGTGAAATATA
75893564 TGTG-AA-ATA
1 TGTGAAATATA
75893573 TGTGAAATATA
1 TGTGAAATATA
75893584 T
1 T
75893585 TTGCGTGATC
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 7 0.37
10 4 0.21
11 8 0.42
ACGTcount: A:0.44, C:0.00, G:0.19, T:0.38
Consensus pattern (11 bp):
TGTGAAATATA
Found at i:75897047 original size:58 final size:58
Alignment explanation
Indices: 75896952--75897067 Score: 205
Period size: 58 Copynumber: 2.0 Consensus size: 58
75896942 AATTCAATTA
* *
75896952 AGTACTTATCTATTCTCTTCACTTAAACTTAACCTTTCTCTTTTCAATTTAAAGCTTT
1 AGTACTTACCTATTCTCTTCACTTAAACTTAACCTTTCTCTTTTCAATTCAAAGCTTT
*
75897010 AGTACTTACCTATTCTCTTCACTTAAACTTAATCTTTCTCTTTTCAATTCAAAGCTTT
1 AGTACTTACCTATTCTCTTCACTTAAACTTAACCTTTCTCTTTTCAATTCAAAGCTTT
75897068 CTTTTCCCTT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.26, C:0.23, G:0.03, T:0.47
Consensus pattern (58 bp):
AGTACTTACCTATTCTCTTCACTTAAACTTAACCTTTCTCTTTTCAATTCAAAGCTTT
Found at i:75897278 original size:16 final size:13
Alignment explanation
Indices: 75897251--75897292 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 13
75897241 GCATTAGAGA
75897251 TTTTCC-TTTCTT
1 TTTTCCTTTTCTT
75897263 TTTCTCTCTTTTTCTT
1 TTT-TC-C-TTTTCTT
75897279 TTTTCCTTTTCTT
1 TTTTCCTTTTCTT
75897292 T
1 T
75897293 CTTTTTTTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
12 3 0.12
13 10 0.38
14 2 0.08
15 2 0.08
16 9 0.35
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTCCTTTTCTT
Found at i:75897295 original size:33 final size:36
Alignment explanation
Indices: 75897251--75897323 Score: 98
Period size: 33 Copynumber: 2.1 Consensus size: 36
75897241 GCATTAGAGA
**
75897251 TTTTCCTTTCTTTTTCTCTCTTTTTCTTT-TTT-CC
1 TTTTCCTTTCTTTTTCTCTCCCTTTCTTTCTTTCCC
*
75897285 TTTT-CTTTCTTTTTTTCTCCCTTTCTTTCTTTCCC
1 TTTTCCTTTCTTTTTCTCTCCCTTTCTTTCTTTCCC
75897320 TTTT
1 TTTT
75897324 ATTTTTGCTA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 21 0.62
34 7 0.21
35 6 0.18
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (36 bp):
TTTTCCTTTCTTTTTCTCTCCCTTTCTTTCTTTCCC
Found at i:75897308 original size:16 final size:16
Alignment explanation
Indices: 75897255--75897317 Score: 54
Period size: 16 Copynumber: 3.9 Consensus size: 16
75897245 TAGAGATTTT
*
75897255 CCTTTCTTTTTCTCTC
1 CCTTTCTTTTTTTCTC
** * *
75897271 TTTTTCTTTTTTCCTTT
1 CCTTTCTTTTTTTC-TC
*
75897288 TCTTTCTTTTTTTCTC
1 CCTTTCTTTTTTTCTC
*
75897304 CCTTTCTTTCTTTC
1 CCTTTCTTTTTTTC
75897318 CCTTTTATTT
Statistics
Matches: 36, Mismatches: 10, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
16 23 0.64
17 13 0.36
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (16 bp):
CCTTTCTTTTTTTCTC
Found at i:75897309 original size:20 final size:19
Alignment explanation
Indices: 75897277--75897316 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
75897267 TCTCTTTTTC
*
75897277 TTTTTTCCTTTTCTTTCTT
1 TTTTTTCCCTTTCTTTCTT
75897296 TTTTTCTCCCTTTCTTTCTT
1 TTTTT-TCCCTTTCTTTCTT
75897316 T
1 T
75897317 CCCTTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTTTTCCCTTTCTTTCTT
Found at i:75898205 original size:35 final size:35
Alignment explanation
Indices: 75898163--75898233 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
75898153 AGCTTGGTCT
75898163 TCAATAGCCTCTCCAAGTTTATGATTATGCTTTGG
1 TCAATAGCCTCTCCAAGTTTATGATTATGCTTTGG
75898198 TCAATAGCCTCTCCAAGTTTATGATTATGCTTTGG
1 TCAATAGCCTCTCCAAGTTTATGATTATGCTTTGG
75898233 T
1 T
75898234 GGTGTTGTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.41
Consensus pattern (35 bp):
TCAATAGCCTCTCCAAGTTTATGATTATGCTTTGG
Found at i:75905539 original size:37 final size:37
Alignment explanation
Indices: 75905489--75905567 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
75905479 TTATTACGAA
* * *
75905489 GTCTTACCCGGACATAATCTCCACACGA-AGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACAC-ATAGTCATCGG
75905526 GTCTTACCCGGACAAAATCCCCACACATAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACATAGTCATCGG
75905563 GTCTT
1 GTCTT
75905568 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 1 0.03
37 37 0.97
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACATAGTCATCGG
Done.