Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 233 of 290
Found at i:75905773 original size:47 final size:47
Alignment explanation
Indices: 75905738--75906161 Score: 686
Period size: 47 Copynumber: 9.0 Consensus size: 47
75905728 TCGGCCTTGC
*
75905738 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
* *
75905785 CACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
1 CACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
* * *
75905832 CACACACATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTAT
1 CACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
* *
75905879 CACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCCTAT
1 CACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
* *
75905926 CACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCCTAT
1 CACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
* *
75905973 CACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTAT
1 CACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
75906020 CACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
** *
75906067 CACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTAT
1 CACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
*
75906114 CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 CAC--ACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
75906162 CTATCATTTC
Statistics
Matches: 359, Mismatches: 16, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 318 0.89
49 41 0.11
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
Found at i:75916091 original size:5 final size:5
Alignment explanation
Indices: 75916077--75916121 Score: 67
Period size: 5 Copynumber: 9.2 Consensus size: 5
75916067 ACAAAAATCT
75916077 AAAT- AAATA AAATA AAATA AAATA AAATA AAATA AACA-A AAATA A
1 AAATA AAATA AAATA AAATA AAATA AAATA AAATA AA-ATA AAATA A
75916122 GTTAATTCAA
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
4 5 0.13
5 32 0.84
6 1 0.03
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (5 bp):
AAATA
Found at i:75918816 original size:46 final size:47
Alignment explanation
Indices: 75918716--75918838 Score: 133
Period size: 46 Copynumber: 2.6 Consensus size: 47
75918706 GTGGTTTAAC
* * *
75918716 CACATATCTATTTTGGCAGCTTGACTTCAATTATAGTGGCTCGACCA
1 CACATATCTATTTTGGCAGCTTAACTGCAATTATAGTGGCTAGACCA
* *
75918763 CACATATCTGTTTTGGCATCTTAACTGCAA-TATAGTGGCTTAG-CCA
1 CACATATCTATTTTGGCAGCTTAACTGCAATTATAGTGGC-TAGACCA
* * * * *
75918809 CATATATCTAATCTAGCAGTTTAACTGCAA
1 CACATATCTATTTTGGCAGCTTAACTGCAA
75918839 CTCTGGTGGC
Statistics
Matches: 63, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
46 35 0.56
47 28 0.44
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.34
Consensus pattern (47 bp):
CACATATCTATTTTGGCAGCTTAACTGCAATTATAGTGGCTAGACCA
Found at i:75920922 original size:19 final size:20
Alignment explanation
Indices: 75920900--75920939 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
75920890 AATTTGAAAC
75920900 AAAACGT-AAAATTTTGGAA
1 AAAACGTGAAAATTTTGGAA
*
75920919 AAAACTTGAAAATTTTGGAA
1 AAAACGTGAAAATTTTGGAA
75920939 A
1 A
75920940 CAGGGGTTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.53, C:0.05, G:0.15, T:0.28
Consensus pattern (20 bp):
AAAACGTGAAAATTTTGGAA
Found at i:75921517 original size:661 final size:660
Alignment explanation
Indices: 75920217--75921520 Score: 2297
Period size: 661 Copynumber: 2.0 Consensus size: 660
75920207 TAGTTTGGGG
* *
75920217 ACATTCTAGGATCAATTTGAAACAAAACATAAAATTTTGGAAAAACTTGGAAATTTTGGAAACAG
1 ACATTCAAGGATCAATTTGAAACAAAACATAAAATTTTGGAAAAACTTGAAAATTTTGGAAACAG
*
75920282 GGGTTACACAACCGCGTGGCCAAGGCGTGTAACATAGCCCAAACCGTGTGGTCATTTGAAGTACG
66 GGGTTACACAACCGCGTGGCCAAGGCGTGTAACATAGCCCAAACCGTGTGGACATTTGAAGTACG
75920347 GACACACGGCCTTGTCCAAGCCCATGTGTTCACCCGTGTGGGTATTTGAAATAAGGCCAAGCGGT
131 GACACACGGCCTTGTCCAAGCCCATGTGTTCACCCGTGTGGGTATTTGAAATAAGGCCAAGCGGT
75920412 AGTGTCGTAGGTTGTGTGCTAGACCGTGTTACATACTGACTTGAGACACACAGCCGTATCGCAGG
196 AGTGTCGTAGGTTGTGTGCTAGACCGTGTTACATACTGACTTGAGACACACAGCCGTATCGCAGG
*
75920477 CCGTGTCTCAGACCGTGTGAAACCTGCACCTAAAATAATAGTGACACACAACTGTATAGAGTGGC
261 CCGTGTCTCAGACCGTGTGAAACCTGCACCTAAAATAATAATGACACACAACTGTATAGAGTGGC
* * * ** * *
75920542 TGTGTGTGGCACACGACTGTCTGATAGCCCGTGTCCCAAGCCGTGTTCTTTTTATATTGCCCCTA
326 TGTGTGTGGCACACGACTGTCTGATAGCCCGTGTCACAAGCAGTGTGCTTCATAAATTGCCCCCA
* *
75920607 AAACAAGTCATTTCAAACCCAATTCTTGCACACCAAGACACACCATTTTTATAAACATTCATATG
391 AAACAAGCCATTTCAAACCCAATTCTTGCACACCAAGACACACCATTTTTACAAACATTCATATG
*
75920672 ATCAAAACACATTTTAAACATACTTAAAACATACTAATTCCATCAACCTATAAGACTAACCAATG
456 ACCAAAACACATTTTAAACATACTTAAAACATACTAATTCCATCAACCTATAAGACTAACCAATG
*
75920737 TACCAGCAAAAGGTACCAAAATCACAAACCAAACATAATCTCATTCAACATTACAAGTTCATTCA
521 TACCAGAAAAAGGTACCAAAATCACAAACCAAACATAATCTCATTCAACATTACAAGTTCATTCA
75920802 ATAAACTTAGATCAAACATACCAACAACCTTTTCAAAAGCATACCATTCAACCATGACAAAACAT
586 ATAAACTTAGATCAAACATACCAACAACCTTTTCAAAAGCATACCATTCAACCATGACAAAACAT
75920867 AAAATTTGAA
651 AAAATTTGAA
*
75920877 ACATTCAAGGATCAATTTGAAACAAAACGTAAAATTTTGGAAAAAACTTGAAAATTTTGGAAACA
1 ACATTCAAGGATCAATTTGAAACAAAACATAAAATTTTGG-AAAAACTTGAAAATTTTGGAAACA
*
75920942 GGGGTTACACAACCGCGTGGCCAAGGCGTGTAGCATAGCCCAAACCGTGTGGACATTTGAAGTAC
65 GGGGTTACACAACCGCGTGGCCAAGGCGTGTAACATAGCCCAAACCGTGTGGACATTTGAAGTAC
* * * *
75921007 GGACACACGGCCTTGTCCAAGCTCGTGTGTTCACCCGTGTGGGTATTTGAAATAAGGCCAGGTGG
130 GGACACACGGCCTTGTCCAAGCCCATGTGTTCACCCGTGTGGGTATTTGAAATAAGGCCAAGCGG
* *
75921072 TAGTGTCGTAGGTTGTGTGCTAGACCGTGTTACATACTGACTTGAGACACA-TGACCGTGTCGCA
195 TAGTGTCGTAGGTTGTGTGCTAGACCGTGTTACATACTGACTTGAGACACACAG-CCGTATCGCA
* * *
75921136 GGCTGTGTCTCAGACCGTGTGAAACCTGCACCTACAATAATAATGACACACGACTGTATAGAGTG
259 GGCCGTGTCTCAGACCGTGTGAAACCTGCACCTAAAATAATAATGACACACAACTGTATAGAGTG
*
75921201 GCTGTGTGTGGCACACGACTGTCTGATATCCCGTGTCACAAGCAGTGTGCTTCATAAATTGCCCC
324 GCTGTGTGTGGCACACGACTGTCTGATAGCCCGTGTCACAAGCAGTGTGCTTCATAAATTG-CCC
75921266 CCAAAA-AAGCCATTTCAAACCCAATTCTTGCACACCAAGACACACCATTTTTACAAACATTCAT
388 CCAAAACAAGCCATTTCAAACCCAATTCTTGCACACCAAGACACACCATTTTTACAAACATTCAT
75921330 ATGACCAAAACACATTTTAAACATACTTAAAACATACTAATTCCATCAACCTATAAGACTAACCA
453 ATGACCAAAACACATTTTAAACATACTTAAAACATACTAATTCCATCAACCTATAAGACTAACCA
*
75921395 ATGTACCAGAAAAAGGTACCAAAATCACAAACCAAACATAATCTCATTCAACATTATAAGTTCAT
518 ATGTACCAGAAAAAGGTACCAAAATCACAAACCAAACATAATCTCATTCAACATTACAAGTTCAT
* *
75921460 TCAATAAACTTAGATCAAACATACCAACCACCTTTTCAAAGGCATACCATTCAACCATGAC
583 TCAATAAACTTAGATCAAACATACCAACAACCTTTTCAAAAGCATACCATTCAACCATGAC
75921521 TTACCTAATA
Statistics
Matches: 611, Mismatches: 30, Indels: 5
0.95 0.05 0.01
Matches are distributed among these distances:
660 39 0.06
661 564 0.92
662 8 0.01
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (660 bp):
ACATTCAAGGATCAATTTGAAACAAAACATAAAATTTTGGAAAAACTTGAAAATTTTGGAAACAG
GGGTTACACAACCGCGTGGCCAAGGCGTGTAACATAGCCCAAACCGTGTGGACATTTGAAGTACG
GACACACGGCCTTGTCCAAGCCCATGTGTTCACCCGTGTGGGTATTTGAAATAAGGCCAAGCGGT
AGTGTCGTAGGTTGTGTGCTAGACCGTGTTACATACTGACTTGAGACACACAGCCGTATCGCAGG
CCGTGTCTCAGACCGTGTGAAACCTGCACCTAAAATAATAATGACACACAACTGTATAGAGTGGC
TGTGTGTGGCACACGACTGTCTGATAGCCCGTGTCACAAGCAGTGTGCTTCATAAATTGCCCCCA
AAACAAGCCATTTCAAACCCAATTCTTGCACACCAAGACACACCATTTTTACAAACATTCATATG
ACCAAAACACATTTTAAACATACTTAAAACATACTAATTCCATCAACCTATAAGACTAACCAATG
TACCAGAAAAAGGTACCAAAATCACAAACCAAACATAATCTCATTCAACATTACAAGTTCATTCA
ATAAACTTAGATCAAACATACCAACAACCTTTTCAAAAGCATACCATTCAACCATGACAAAACAT
AAAATTTGAA
Found at i:75925689 original size:25 final size:25
Alignment explanation
Indices: 75925643--75925691 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
75925633 CGATATAAAA
* * *
75925643 TGTAAGAAATGTGTATTGTCTGTTG
1 TGTAAGAAATGGGTACTATCTGTTG
75925668 TGTAAGAAATGGGTACTATCTGTT
1 TGTAAGAAATGGGTACTATCTGTT
75925692 AGACTTAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.06, G:0.27, T:0.41
Consensus pattern (25 bp):
TGTAAGAAATGGGTACTATCTGTTG
Found at i:75927914 original size:24 final size:24
Alignment explanation
Indices: 75927885--75927941 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
75927875 GACTGCACGG
*
75927885 TGTGGTCAAACCAATC-ATTTACGT
1 TGTGGTCAAACCAATCAATAT-CGT
* * *
75927909 TGTGGTTAAGCCACTCAATATCGT
1 TGTGGTCAAACCAATCAATATCGT
75927933 TGTGGTCAA
1 TGTGGTCAA
75927942 GTCACTCGTT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 24 0.89
25 3 0.11
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.33
Consensus pattern (24 bp):
TGTGGTCAAACCAATCAATATCGT
Found at i:75929365 original size:20 final size:19
Alignment explanation
Indices: 75929336--75929377 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
75929326 GTATGGTAAG
75929336 GGGGAGAAAAATGGCAATA
1 GGGGAGAAAAATGGCAATA
75929355 GGGGAGAAAAATGGCAATA
1 GGGGAGAAAAATGGCAATA
75929374 GGGG
1 GGGG
75929378 GGACAAAGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.43, C:0.05, G:0.43, T:0.10
Consensus pattern (19 bp):
GGGGAGAAAAATGGCAATA
Found at i:75932327 original size:54 final size:55
Alignment explanation
Indices: 75932269--75932392 Score: 144
Period size: 55 Copynumber: 2.3 Consensus size: 55
75932259 TTTTTTTTTA
* * *
75932269 TTTTACAAGATGTTT-TAAAAAATTATCATATATA-TTTTTAATATTTTATTATAT
1 TTTTACAAAATATTTGT-AAAAATTATCATATACATTTTTTAATATTTTATTATAT
* * *
75932323 TTTTATAAAATATTTGTCAAAATTGTCATATACATTTTTTAATATTTTATTATAT
1 TTTTACAAAATATTTGTAAAAATTATCATATACATTTTTTAATATTTTATTATAT
* * *
75932378 TCTTATAGAATATTT
1 TTTTACAAAATATTT
75932393 ATCAATCTCC
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
54 26 0.43
55 34 0.57
ACGTcount: A:0.37, C:0.05, G:0.04, T:0.54
Consensus pattern (55 bp):
TTTTACAAAATATTTGTAAAAATTATCATATACATTTTTTAATATTTTATTATAT
Found at i:75932384 original size:55 final size:54
Alignment explanation
Indices: 75932287--75932397 Score: 168
Period size: 55 Copynumber: 2.0 Consensus size: 54
75932277 GATGTTTTAA
* * *
75932287 AAAATTATCATATATATTTTTAATATTTTATTATATTTTTATAAAATATTTGTC
1 AAAATTATCATATACATTTTTAATATTTTATTATATTCTTATAAAATATTTATC
* *
75932341 AAAATTGTCATATACATTTTTTAATATTTTATTATATTCTTATAGAATATTTATC
1 AAAATTATCATATACA-TTTTTAATATTTTATTATATTCTTATAAAATATTTATC
75932396 AA
1 AA
75932398 TCTCCTATTT
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
54 14 0.27
55 37 0.73
ACGTcount: A:0.39, C:0.05, G:0.03, T:0.53
Consensus pattern (54 bp):
AAAATTATCATATACATTTTTAATATTTTATTATATTCTTATAAAATATTTATC
Found at i:75944670 original size:20 final size:18
Alignment explanation
Indices: 75944645--75944683 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
75944635 ATATTTTTTA
*
75944645 ATTATTTTAATTTATAATAT
1 ATTA-TTTAATATA-AATAT
75944665 ATTATTTAATATAAATAT
1 ATTATTTAATATAAATAT
75944683 A
1 A
75944684 ATTTCAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 8 0.44
20 4 0.22
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
ATTATTTAATATAAATAT
Found at i:75947498 original size:8 final size:8
Alignment explanation
Indices: 75947487--75947518 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
75947477 AATTATAAAA
75947487 TATTTTAT
1 TATTTTAT
75947495 TATTTTAT
1 TATTTTAT
75947503 TATTTTAT
1 TATTTTAT
*
75947511 TATATTAT
1 TATTTTAT
75947519 AAATTAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (8 bp):
TATTTTAT
Found at i:75947541 original size:29 final size:29
Alignment explanation
Indices: 75947501--75947557 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
75947491 TTATTATTTT
*
75947501 ATTATTTTATTATATTAT-AAATTAAATTG
1 ATTATATTATTATATTATGAAA-TAAATTG
75947530 ATTATATTATTATATTATGAAATAAATT
1 ATTATATTATTATATTATGAAATAAATT
75947558 AAGAAAAGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 23 0.88
30 3 0.12
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (29 bp):
ATTATATTATTATATTATGAAATAAATTG
Found at i:75947543 original size:8 final size:8
Alignment explanation
Indices: 75947491--75947547 Score: 50
Period size: 8 Copynumber: 7.5 Consensus size: 8
75947481 ATAAAATATT
*
75947491 TTATTATT
1 TTATTATA
*
75947499 TTATTATT
1 TTATTATA
75947507 TTATTATA
1 TTATTATA
75947515 TTA-TA-A
1 TTATTATA
*
75947521 --ATTAAA
1 TTATTATA
75947527 TTGATTATA
1 TT-ATTATA
75947536 TTATTATA
1 TTATTATA
75947544 TTAT
1 TTAT
75947548 GAAATAAATT
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
4 1 0.02
5 2 0.05
6 2 0.05
7 2 0.05
8 28 0.67
9 7 0.17
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (8 bp):
TTATTATA
Found at i:75947660 original size:33 final size:31
Alignment explanation
Indices: 75947616--75947689 Score: 107
Period size: 33 Copynumber: 2.4 Consensus size: 31
75947606 AATTGAGTAC
75947616 ATTTTTATTATTTA-TATATAATTAGTAAAAAG
1 ATTTTTATTATTTATTAT-TAATTAGT-AAAAG
75947648 ATATTTTATTATTTATTATTAATTAGTAAAAG
1 AT-TTTTATTATTTATTATTAATTAGTAAAAG
75947680 ATTTTT-TTAT
1 ATTTTTATTAT
75947690 ATGATAAATA
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
30 4 0.10
31 4 0.10
32 9 0.22
33 20 0.50
34 3 0.08
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (31 bp):
ATTTTTATTATTTATTATTAATTAGTAAAAG
Found at i:75953923 original size:33 final size:32
Alignment explanation
Indices: 75953881--75953954 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 32
75953871 AAATGAGTAA
75953881 ATTTGTATTATTTA-TATATAATTAGTAAAAAGAT
1 ATTT-TATTATTTATTAT-TAATTAGT-AAAAGAT
75953915 ATTTTATTATTTATTATTAATTAGTAAAAGAT
1 ATTTTATTATTTATTATTAATTAGTAAAAGAT
75953947 -TTTT-TTAT
1 ATTTTATTAT
75953955 ATGATAAATA
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
30 4 0.10
31 4 0.10
32 7 0.18
33 17 0.44
34 7 0.18
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (32 bp):
ATTTTATTATTTATTATTAATTAGTAAAAGAT
Found at i:75954259 original size:21 final size:21
Alignment explanation
Indices: 75954216--75954264 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
75954206 TAAGAAATAA
* * *
75954216 TAATAAT-TATTAACTTAATG
1 TAATAATATAATAAATTAAAG
75954236 TAATAATATAATAAATTAAAG
1 TAATAATATAATAAATTAAAG
*
75954257 TAAAAATA
1 TAATAATA
75954265 AAAGATAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (21 bp):
TAATAATATAATAAATTAAAG
Found at i:75960561 original size:6 final size:6
Alignment explanation
Indices: 75960550--75960620 Score: 142
Period size: 6 Copynumber: 11.8 Consensus size: 6
75960540 AGGATTGCAA
75960550 ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC
1 ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC
75960598 ATTTTC ATTTTC ATTTTC ATTTT
1 ATTTTC ATTTTC ATTTTC ATTTT
75960621 TGAAAACTTA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 65 1.00
ACGTcount: A:0.17, C:0.15, G:0.00, T:0.68
Consensus pattern (6 bp):
ATTTTC
Found at i:75964205 original size:20 final size:21
Alignment explanation
Indices: 75964161--75964211 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
75964151 TTTGGTATAT
*
75964161 TTTTCAATGTCTTAGTTTTTA
1 TTTTCAATATCTTAGTTTTTA
* *
75964182 TTTTCAATATC-TATTTTTTC
1 TTTTCAATATCTTAGTTTTTA
*
75964202 TTTTCCATAT
1 TTTTCAATAT
75964212 TCCATTGATC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.20, C:0.14, G:0.04, T:0.63
Consensus pattern (21 bp):
TTTTCAATATCTTAGTTTTTA
Found at i:75966319 original size:21 final size:20
Alignment explanation
Indices: 75966283--75966336 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
75966273 CAGTTTCCAA
*
75966283 TGCCAACGTC-TTTTTTTA-
1 TGCCAATGTCTTTTTTTTAT
*
75966301 TGTCAATGTCCTTTTTTTTAT
1 TGCCAATGT-CTTTTTTTTAT
75966322 TGCCAATGTCTTTTT
1 TGCCAATGTCTTTTT
75966337 GGTGGAGCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 7 0.23
19 1 0.03
20 14 0.47
21 8 0.27
ACGTcount: A:0.15, C:0.19, G:0.11, T:0.56
Consensus pattern (20 bp):
TGCCAATGTCTTTTTTTTAT
Found at i:75967415 original size:24 final size:24
Alignment explanation
Indices: 75967383--75967437 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
75967373 AGGTGCATTT
*
75967383 ATACAAAGGACACAATAGTGGCAA
1 ATACAAAGGACACAATAATGGCAA
* *
75967407 ATACAAAGGACTCACTAATGGCAA
1 ATACAAAGGACACAATAATGGCAA
75967431 ATACAAA
1 ATACAAA
75967438 AATTAAAAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.51, C:0.18, G:0.16, T:0.15
Consensus pattern (24 bp):
ATACAAAGGACACAATAATGGCAA
Found at i:75972256 original size:13 final size:13
Alignment explanation
Indices: 75972238--75972263 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
75972228 AGTTCACATT
75972238 TTTCTTATATTTG
1 TTTCTTATATTTG
75972251 TTTCTTATATTTG
1 TTTCTTATATTTG
75972264 ACATCTTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.08, T:0.69
Consensus pattern (13 bp):
TTTCTTATATTTG
Found at i:75973786 original size:51 final size:51
Alignment explanation
Indices: 75973724--75973841 Score: 159
Period size: 51 Copynumber: 2.3 Consensus size: 51
75973714 CATTTCCAGG
* * *
75973724 TCATTT-TCATTTTCATTTTGGAGAAAACCATATTCATTTCTAAATGGTT-
1 TCATTTCTCATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATAGTTC
* *
75973773 TCATTTCTCCATTTTCATTTTGGAGAAAACCATAATCATTTCCATATATTTC
1 TCATTTCT-CATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATAGTTC
75973825 TCATTTCTTCATTTTCA
1 TCATTTC-TCATTTTCA
75973842 CCATTTCTAT
Statistics
Matches: 60, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
49 6 0.10
50 1 0.02
51 37 0.62
52 15 0.25
53 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.07, T:0.47
Consensus pattern (51 bp):
TCATTTCTCATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATAGTTC
Found at i:75982072 original size:31 final size:31
Alignment explanation
Indices: 75982036--75982100 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
75982026 TTTTTTTGTC
*
75982036 TAATTTAGTACGTAAATATGACAATTTTTCT
1 TAATTTAGTACCTAAATATGACAATTTTTCT
* * *
75982067 TAATTTAGTACCTAAATTTGATACTTTTTCT
1 TAATTTAGTACCTAAATATGACAATTTTTCT
75982098 TAA
1 TAA
75982101 GTTGATACTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.34, C:0.11, G:0.08, T:0.48
Consensus pattern (31 bp):
TAATTTAGTACCTAAATATGACAATTTTTCT
Found at i:75983447 original size:20 final size:23
Alignment explanation
Indices: 75983422--75983468 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
75983412 TTTTTAGATT
75983422 ATAATTA-AA-TT-AAGAAAAAA
1 ATAATTATAATTTAAAGAAAAAA
*
75983442 ATAATTATAATTTAAAGAAAAAC
1 ATAATTATAATTTAAAGAAAAAA
75983465 ATAA
1 ATAA
75983469 AATTGTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 7 0.30
21 2 0.09
22 2 0.09
23 12 0.52
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (23 bp):
ATAATTATAATTTAAAGAAAAAA
Found at i:75989106 original size:18 final size:18
Alignment explanation
Indices: 75989085--75989121 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
75989075 ATGTGTTTAG
*
75989085 TTATTTTTATTTAATTAA
1 TTATTTTAATTTAATTAA
*
75989103 TTATTTTAATTTATTTAA
1 TTATTTTAATTTAATTAA
75989121 T
1 T
75989122 AATATATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TTATTTTAATTTAATTAA
Found at i:75989115 original size:22 final size:22
Alignment explanation
Indices: 75989090--75989145 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
75989080 TTTAGTTATT
75989090 TTTATTTAATTAAT-TATTTTAA
1 TTTATTTAA-TAATATATTTTAA
*
75989112 TTTATTTAATAATATATTTTTA
1 TTTATTTAATAATATATTTTAA
*
75989134 TTTCATATAATA
1 TTT-ATTTAATA
75989146 TGAAATAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
21 4 0.13
22 19 0.63
23 7 0.23
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (22 bp):
TTTATTTAATAATATATTTTAA
Found at i:75989133 original size:18 final size:18
Alignment explanation
Indices: 75989086--75989146 Score: 59
Period size: 20 Copynumber: 3.1 Consensus size: 18
75989076 TGTGTTTAGT
75989086 TATTTTTATTTAATTAATTA
1 TATTTTTATTTAA-TAA-TA
*
75989106 TTTTAATTTATTTAATAATA
1 TATT--TTTATTTAATAATA
75989126 TATTTTTATTTCATATAATA
1 TATTTTTATTT-A-ATAATA
75989146 T
1 T
75989147 GAAATAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
18 7 0.20
19 1 0.03
20 15 0.43
21 3 0.09
22 9 0.26
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (18 bp):
TATTTTTATTTAATAATA
Found at i:75989187 original size:34 final size:36
Alignment explanation
Indices: 75989120--75989188 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
75989110 AATTTATTTA
*
75989120 ATAATATATTTTTATTTCATATAATATGAAATAATT
1 ATAATATATTTTTATCTCATATAATATGAAATAATT
*
75989156 ATAATATATTATTTATCT-ATA-AATTTG-AATAAT
1 ATAATATATT-TTTATCTCATATAATATGAAATAAT
75989189 ATTTTTGATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 6 0.20
35 5 0.17
36 13 0.43
37 6 0.20
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.49
Consensus pattern (36 bp):
ATAATATATTTTTATCTCATATAATATGAAATAATT
Found at i:75992581 original size:45 final size:45
Alignment explanation
Indices: 75992514--75992599 Score: 163
Period size: 45 Copynumber: 1.9 Consensus size: 45
75992504 GTGTCATAAA
75992514 ACAAATATATATACACAATGTTTTAGTACAACCACTAGTATATAT
1 ACAAATATATATACACAATGTTTTAGTACAACCACTAGTATATAT
*
75992559 ACAAATATATATACACATTGTTTTAGTACAACCACTAGTAT
1 ACAAATATATATACACAATGTTTTAGTACAACCACTAGTAT
75992600 CAATTGAAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.43, C:0.16, G:0.07, T:0.34
Consensus pattern (45 bp):
ACAAATATATATACACAATGTTTTAGTACAACCACTAGTATATAT
Found at i:75999953 original size:23 final size:23
Alignment explanation
Indices: 75999923--75999966 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
75999913 CAATAACTTA
75999923 AAATATATAAAAAATTTTAAAAT
1 AAATATATAAAAAATTTTAAAAT
* *
75999946 AAATATATAATAATTTTTAAA
1 AAATATATAAAAAATTTTAAA
75999967 GAATTATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (23 bp):
AAATATATAAAAAATTTTAAAAT
Found at i:75999974 original size:22 final size:22
Alignment explanation
Indices: 75999923--75999978 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
75999913 CAATAACTTA
* *
75999923 AAATATATAAAAAATTTTAAAAT
1 AAATATAT-AATAATTTTAAAAG
*
75999946 AAATATATAATAATTTTTAAAG
1 AAATATATAATAATTTTAAAAG
*
75999968 AATTATA-AATA
1 AAATATATAATA
75999979 TCTAAAAAGC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 4 0.14
22 17 0.59
23 8 0.28
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (22 bp):
AAATATATAATAATTTTAAAAG
Found at i:76001140 original size:33 final size:33
Alignment explanation
Indices: 76001098--76001195 Score: 178
Period size: 33 Copynumber: 3.0 Consensus size: 33
76001088 GGGGTGTCAG
76001098 ATGCGTGGAGCGTGGTGACCAAGGCTGAGGGGC
1 ATGCGTGGAGCGTGGTGACCAAGGCTGAGGGGC
76001131 ATGCGTGGAGCGTGGTGACCAAGGCTGAGGGGC
1 ATGCGTGGAGCGTGGTGACCAAGGCTGAGGGGC
* *
76001164 ATGCGTGGGGCGTGGTGGCCAAGGCTGAGGGG
1 ATGCGTGGAGCGTGGTGACCAAGGCTGAGGGG
76001196 TATGGTTGCT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 63 1.00
ACGTcount: A:0.16, C:0.17, G:0.51, T:0.15
Consensus pattern (33 bp):
ATGCGTGGAGCGTGGTGACCAAGGCTGAGGGGC
Found at i:76002164 original size:64 final size:64
Alignment explanation
Indices: 76002091--76002213 Score: 203
Period size: 64 Copynumber: 1.9 Consensus size: 64
76002081 ATTCATAACA
*
76002091 CATCTAGTTA-GGAGCATTTGATTCATTTCGATCATAACATCCTAATTATTTGACATAAGAATCG
1 CATCTAGTTACGG-GCATTTGATTCATTTCGAACATAACATCCTAATTATTTGACATAAGAATCG
* *
76002155 CATCTAGTTACGGGCATTTGATTCATTTCGAACATAGCATCCTAATTATTTGGCATAAG
1 CATCTAGTTACGGGCATTTGATTCATTTCGAACATAACATCCTAATTATTTGACATAAG
76002214 GATAGATACA
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
64 53 0.96
65 2 0.04
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (64 bp):
CATCTAGTTACGGGCATTTGATTCATTTCGAACATAACATCCTAATTATTTGACATAAGAATCG
Found at i:76002385 original size:44 final size:44
Alignment explanation
Indices: 76002330--76002584 Score: 162
Period size: 44 Copynumber: 5.7 Consensus size: 44
76002320 GATTACAAAC
76002330 CTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAGT-GTCAGGT
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAGTAG-CAGGT
* * ** *
76002374 CTTATCTCCCTGAAGTTGCAGTGGTGCAGACTGAAGATAG-AGAAT
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAG-TAGCAG-GT
* * * * * ** *
76002419 TTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATAAATAGAT
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAG-------T-AGCAGGT
* * * * * *
76002471 CTTATCTCTCTGAAGTTACAATAGAGCA-GAT-AA-TAGCAAGC
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAGTAGCAGGT
* *
76002512 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGT-GACAGGT
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAGTAG-CAGGT
*
76002556 CTTATTTCCCTGAAGTTGCAGTAGAGCAG
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAG
76002585 ACCAAAGACG
Statistics
Matches: 162, Mismatches: 34, Indels: 30
0.72 0.15 0.13
Matches are distributed among these distances:
41 26 0.16
42 3 0.02
43 3 0.02
44 65 0.40
45 33 0.20
46 1 0.01
50 2 0.01
51 3 0.02
52 24 0.15
53 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.29
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAGTAGCAGGT
Found at i:76002915 original size:44 final size:46
Alignment explanation
Indices: 76002866--76002985 Score: 136
Period size: 46 Copynumber: 2.7 Consensus size: 46
76002856 CGATTGTAGT
* ** * *
76002866 CTTATCTCCCTGAAGTTGCAATGGAGCA-GAT-CGAAGCCACAATC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGATAAAAAGACACAAAC
* * * *
76002910 TTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAATACACAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGATAAAAAGACACAAAC
*
76002956 CTTATCTCCCTGAAGTTGCAGTGGAACAGG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGG
76002986 TTGAAGTTAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
44 24 0.39
45 3 0.05
46 34 0.56
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (46 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGGATAAAAAGACACAAAC
Found at i:76006449 original size:21 final size:21
Alignment explanation
Indices: 76006402--76006450 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
76006392 CTCGAGATCA
*
76006402 TAAACCCAAGACCTTAGACTT
1 TAAACCCAAGACCTTAGAATT
* *
76006423 TGAACCCAAGATCTTA-AATAT
1 TAAACCCAAGACCTTAGAAT-T
76006444 TAAACCC
1 TAAACCC
76006451 TAAACTCGTG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 2 0.09
21 21 0.91
ACGTcount: A:0.41, C:0.27, G:0.08, T:0.24
Consensus pattern (21 bp):
TAAACCCAAGACCTTAGAATT
Found at i:76014778 original size:17 final size:18
Alignment explanation
Indices: 76014756--76014799 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
76014746 GCCAATCTGA
76014756 GCATGTGGGAC-ACACAG
1 GCATGTGGGACTACACAG
* *
76014773 GCATGTGGGCCTACACGG
1 GCATGTGGGACTACACAG
76014791 GCATGTGGG
1 GCATGTGGG
76014800 TCCATAATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 10 0.42
18 14 0.58
ACGTcount: A:0.20, C:0.23, G:0.41, T:0.16
Consensus pattern (18 bp):
GCATGTGGGACTACACAG
Found at i:76020990 original size:3 final size:3
Alignment explanation
Indices: 76020982--76021067 Score: 61
Period size: 3 Copynumber: 29.0 Consensus size: 3
76020972 TCATTATTGC
* *
76020982 TAT TAT TAT TAT T-T TCTT TAT TAT TAT TAT TTT TACT T-T TAT TAT
1 TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TA-T TAT TAT TAT
* * * * * *
76021027 TTT TAT TAT TAC TAT T-G TAT TAC TAC TAT TAT TAT CAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
76021068 ACTGTTTTCT
Statistics
Matches: 65, Mismatches: 13, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
2 5 0.08
3 56 0.86
4 4 0.06
ACGTcount: A:0.27, C:0.07, G:0.01, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:76021005 original size:18 final size:20
Alignment explanation
Indices: 76020982--76021039 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 20
76020972 TCATTATTGC
76020982 TATTATTATTATTTT-C-TT
1 TATTATTATTATTTTACTTT
76021000 TATTATTATTATTTTTACTTT
1 TATTATTATTA-TTTTACTTT
*
76021021 TATTATTTTTATTATTACT
1 TATTATTATTATT-TTACT
76021040 ATTGTATTAC
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
18 11 0.31
19 4 0.11
20 3 0.09
21 17 0.49
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (20 bp):
TATTATTATTATTTTACTTT
Found at i:76021016 original size:15 final size:15
Alignment explanation
Indices: 76020984--76021042 Score: 77
Period size: 15 Copynumber: 3.9 Consensus size: 15
76020974 ATTATTGCTA
76020984 TTATTATTATT-TTCT
1 TTATTATTATTATT-T
76020999 TTATTATTATTATTT
1 TTATTATTATTATTT
76021014 TTACTT-TTATTATTT
1 TTA-TTATTATTATTT
*
76021029 TTATTATTACTATT
1 TTATTATTATTATT
76021043 GTATTACTAC
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
14 2 0.05
15 34 0.85
16 4 0.10
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (15 bp):
TTATTATTATTATTT
Found at i:76027080 original size:6 final size:6
Alignment explanation
Indices: 76027052--76027116 Score: 62
Period size: 6 Copynumber: 10.7 Consensus size: 6
76027042 AGGGTTGGAT
* *
76027052 AAAA-A AAAAGA AAAA-A AAGAAGA AAAAGA AAAAGA ATAAGA ATAAGA
1 AAAAGA AAAAGA AAAAGA AA-AAGA AAAAGA AAAAGA AAAAGA AAAAGA
*
76027099 AGAAGAA ATAAAGA AAAA
1 AAAAG-A A-AAAGA AAAA
76027117 ACTTTCTAAA
Statistics
Matches: 52, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
5 7 0.13
6 35 0.67
7 7 0.13
8 3 0.06
ACGTcount: A:0.80, C:0.00, G:0.15, T:0.05
Consensus pattern (6 bp):
AAAAGA
Found at i:76027845 original size:44 final size:44
Alignment explanation
Indices: 76027709--76027938 Score: 135
Period size: 44 Copynumber: 5.2 Consensus size: 44
76027699 ACAAATATCT
* * * * *
76027709 TCTCCCTGAAATGGCATTGGAGCGGCTCGAAGCCATAGTTCATA
1 TCTCCTTGAAATGGCATTGGAGCGGATCGAAGCCACAATTCGTA
* ** ** ** * *
76027753 TCTCCTTGAAGTTCCAGAGGAGTAGATC-AAGGCTAAAAATCTC-T-
1 TCTCCTTGAAATGGCATTGGAGCGGATCGAA-GC-CACAAT-TCGTA
*
76027797 TCTCCTTGAAATGGCATTGGAGCGGATCGAAGCCACAGTTCGTA
1 TCTCCTTGAAATGGCATTGGAGCGGATCGAAGCCACAATTCGTA
* ** ** ** * ** * *
76027841 TCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGGAACAAATCCCT-
1 TCTCCTTGAAATGGCATTGGAGCGGATCGAAGCCAC-AATTCGTA
* *
76027885 TCTCCCTGAAATGGCATTGGAGCGGCTCGAAGCCACAATTCGTA
1 TCTCCTTGAAATGGCATTGGAGCGGATCGAAGCCACAATTCGTA
76027929 TCTCCTTGAA
1 TCTCCTTGAA
76027939 GTTCCAGTGG
Statistics
Matches: 128, Mismatches: 50, Indels: 16
0.66 0.26 0.08
Matches are distributed among these distances:
42 2 0.02
43 11 0.09
44 103 0.80
45 10 0.08
46 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (44 bp):
TCTCCTTGAAATGGCATTGGAGCGGATCGAAGCCACAATTCGTA
Found at i:76028197 original size:88 final size:88
Alignment explanation
Indices: 76027567--76028171 Score: 798
Period size: 88 Copynumber: 6.9 Consensus size: 88
76027557 GTTGAAATCA
* ** ** * *
76027567 ACAATTCTTATCTAATTGAAGTTTTAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCTCTAAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAA
*
76027632 TGGCATTGAAGCGGCTCGAAGCC
66 TGGCATTGGAGCGGCTCGAAGCC
* * * * * *
76027655 ACAGTTCATATCTCTTTGAAGTTCCAGCGGAGTAGATCAATGCTACAAATATCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAA
76027720 TGGCATTGGAGCGGCTCGAAGCC
66 TGGCATTGGAGCGGCTCGAAGCC
* * * * * * *
76027743 ATAGTTCATATCTCCTTGAAGTTCCAGAGGAGTAGATCAAGGCTAAAAATCTCTTCTCCTTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAA
*
76027808 TGGCATTGGAGCGGATCGAAGCC
66 TGGCATTGGAGCGGCTCGAAGCC
* ** *
76027831 ACAGTTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGGAACAAATCCCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAA
76027896 TGGCATTGGAGCGGCTCGAAGCC
66 TGGCATTGGAGCGGCTCGAAGCC
* * * *
76027919 ACAATTCGTATCTCCTTGAAGTTCCAGTGGAGAAAATCGAGGCTATAAATCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAA
* *
76027984 TGGCATTGGAACGGCTTGAAGCC
66 TGGCATTGGAGCGGCTCGAAGCC
** * * * *
76028007 ACAGCTCGTATCTTCTTGAAGTTCTAGCAGAGTAGATCGAGGCTACAAATCTCTTCTCCCTAAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAA
** *
76028072 TAACATTAGAGCGGCTCGAAGCC
66 TGGCATTGGAGCGGCTCGAAGCC
* *
76028095 ACAATCCGTATCTCCTTGAAATTCCAGCGGAGTAGATCG-GAGCTACAAATCTCTTCTCCCTGAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAG-GCTACAAATCTCTTCTCCCTGAA
*
76028159 ATGGTATTGGAGC
65 ATGGCATTGGAGC
76028172 AGACTAAAGA
Statistics
Matches: 449, Mismatches: 67, Indels: 2
0.87 0.13 0.00
Matches are distributed among these distances:
87 1 0.00
88 448 1.00
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (88 bp):
ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAA
TGGCATTGGAGCGGCTCGAAGCC
Found at i:76028238 original size:44 final size:44
Alignment explanation
Indices: 76028135--76028825 Score: 279
Period size: 44 Copynumber: 15.2 Consensus size: 44
76028125 AGTAGATCGG
* * * * *
76028135 AGCTACAAATCTCT-TCTCCCTGAAA-TGGTATTGGAGCAGACTAA
1 AGCTACAAATCT-TATCTCCCT-AAAGTTGCAGTGGAGCAGATTGA
* * * * *
76028179 AGATACCAATTTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAA
1 AGCTACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGA
* * * *
76028223 AGCTATAAACCTTATC-CCCTTGAAGTTGCAGTAGG-GCAGGTTGA
1 AGCTACAAATCTTATCTCCC-TAAAGTTGCAGT-GGAGCAGATTGA
* * * * * *
76028267 AGTTACGAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGA
1 AGCTACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGA
* * * *
76028311 AGATAGCGAATCTTATCTCCCTAAAGTTACAGTGGGGCAGATTGA
1 AGCTA-CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGA
* * * * * *
76028356 AGCTACAAACCACAAACTTTATCTTCCTGAAGTTGTAGTGGAGTAGGTTGA
1 AGCT----A-CA-AATC-TTATCTCCCTAAAGTTGCAGTGGAGCAGATTGA
* * * *
76028407 AGTTACAAGTCTTATCTCCCTAGAGTTGTAGTGGAGCAGATTGA
1 AGCTACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGA
* * * * * *
76028451 AGAC-AGCAAATCTCA-CTTCCTTAAAATTACAGTGGAACAGATTAA
1 AG-CTA-CAAATCTTATC-TCCCTAAAGTTGCAGTGGAGCAGATTGA
* *
76028496 AGCTACAAGTTACGAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAAACTGA
1 AGCTAC-A---A--A-TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGA
*** * * * * *
76028547 TTATAGCAAATCTTATCTCTCTGAAGTTGCAATAGAGCAGATTAA
1 AGCTA-CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGA
* * * * * **
76028592 AGCTATAAATCCTATAC-CTCTGAAGTTGCAGTAGG-TC-GAATCAA
1 AGCTACAAATCTTAT-CTCCCTAAAGTTGCAGT-GGAGCAG-ATTGA
* * * * * *
76028636 ATCTACCATGGTGAATCTTATCACCCTAAAGTTGTAGAGGAGTATATTGA
1 AGCTA-CA-----AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGA
* * * * *
76028686 AGCCACAAACCTTATCCCCCTGAAGTTGCAATGGAGCA-AGTTGA
1 AGCTACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGA-TTGA
* * * * * *
76028730 AGTTACAAGTCTTATTTCCTTGAAGTTGCAGTGGAGCAGACTGA
1 AGCTACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGA
* * * * * *
76028774 AGATAGCAAATCTTATCTCCTTGAAGTTGTAATGGAGCAGA-TCA
1 AGCTA-CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGA
76028818 AGCTACAA
1 AGCTACAA
76028826 TTGCAGAAGA
Statistics
Matches: 485, Mismatches: 121, Indels: 83
0.70 0.18 0.12
Matches are distributed among these distances:
43 14 0.03
44 229 0.47
45 142 0.29
46 3 0.01
47 1 0.00
48 2 0.00
49 7 0.01
50 28 0.06
51 57 0.12
52 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (44 bp):
AGCTACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGA
Found at i:76028426 original size:140 final size:134
Alignment explanation
Indices: 76028166--76028503 Score: 355
Period size: 140 Copynumber: 2.5 Consensus size: 134
76028156 GAAATGGTAT
* * * ** *
76028166 TGGAGCAGACTAAAGATA-CCAATTTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCTA-T
1 TGGAGCAGACTGAAGATAGCAAATCTTATCTCCCTAAAGTTACAGTGGAGCAGATTAAAGCTACA
*
76028229 AAACCTTATCCCCTTGAAGTTGCAGTAGGGCAGGTTGAAGTTACGAGTCTTATCTCCCT-GAAGT
66 AAACCTTATCCCCTTGAAGTTGCAGTAGGGCAGGTTGAAGTTACAAGTCTTATCTCCCTAG-AGT
76028293 TACAG
130 TACAG
* * *
76028298 TGGAGCAGACTGAAGATAGCGAATCTTATCTCCCTAAAGTTACAGTGGGGCAGATTGAAGCTACA
1 TGGAGCAGACTGAAGATAGCAAATCTTATCTCCCTAAAGTTACAGTGGAGCAGATTAAAGCTACA
* * *
76028363 AACCACAAACTTTATCTTCC-TGAAGTTGTAGT-GGAGTAGGTTGAAGTTACAAGTCTTATCTCC
66 AA--AC---C-TTATC-CCCTTGAAGTTGCAGTAGG-GCAGGTTGAAGTTACAAGTCTTATCTCC
**
76028426 CTAGAGTTGTAG
123 CTAGAGTTACAG
* * * * * *
76028438 TGGAGCAGATTGAAGACAGCAAATCTCA-CTTCCTTAAAATTACAGTGGAACAGATTAAAGCTAC
1 TGGAGCAGACTGAAGATAGCAAATCTTATC-TCCCTAAAGTTACAGTGGAGCAGATTAAAGCTAC
76028502 AA
65 AA
76028504 GTTACGAGTC
Statistics
Matches: 171, Mismatches: 23, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
132 17 0.10
133 38 0.22
134 2 0.01
136 2 0.01
139 4 0.02
140 105 0.61
141 3 0.02
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (134 bp):
TGGAGCAGACTGAAGATAGCAAATCTTATCTCCCTAAAGTTACAGTGGAGCAGATTAAAGCTACA
AAACCTTATCCCCTTGAAGTTGCAGTAGGGCAGGTTGAAGTTACAAGTCTTATCTCCCTAGAGTT
ACAG
Found at i:76028518 original size:140 final size:140
Alignment explanation
Indices: 76028229--76028540 Score: 346
Period size: 140 Copynumber: 2.2 Consensus size: 140
76028219 TTAAAGCTAT
* *
76028229 AAACCTTATC-CCCTTGAAGTTGCAGTAGG-GCAGGTTGAAGTTACGAGTCTTATCTCCCTGAAG
1 AAACTTTATCTCCC-TGAAGTTGCAGT-GGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAG
* * * * ** *
76028292 TTACAGTGGAGCAGACTGAAGATAGCGAATCTTATCTCCCTAAAGTTACAGTGGGGCAGATTGAA
64 TTACAGTGGAGCAGACTGAAGACAGCAAATCTCATCTCCCTAAAATTACAGTGGAACAGATTAAA
76028357 GCTACAAACCAC
129 GCTACAAACCAC
* * *
76028369 AAACTTTATCTTCCTGAAGTTGTAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTCCCT-AGAGT
1 AAACTTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGA-AGT
** * *
76028433 TGTAGTGGAGCAGATTGAAGACAGCAAATCTCA-CTTCCTTAAAATTACAGTGGAACAGATTAAA
65 TACAGTGGAGCAGACTGAAGACAGCAAATCTCATC-TCCCTAAAATTACAGTGGAACAGATTAAA
***
76028497 GCTACAAGTTAC
129 GCTACAAACCAC
* * *
76028509 -GAGTCTTATCTCCCTAAAGTTGCAGTGGAGCA
1 AAACT-TTATCTCCCTGAAGTTGCAGTGGAGCA
76028541 AACTGATTAT
Statistics
Matches: 142, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
139 6 0.04
140 134 0.94
141 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (140 bp):
AAACTTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTT
ACAGTGGAGCAGACTGAAGACAGCAAATCTCATCTCCCTAAAATTACAGTGGAACAGATTAAAGC
TACAAACCAC
Found at i:76030541 original size:3 final size:3
Alignment explanation
Indices: 76030533--76030593 Score: 54
Period size: 3 Copynumber: 20.3 Consensus size: 3
76030523 TCATTATTGC
* *
76030533 TAT TAT TAT TAT T-T TCTT TAT TAT TAT TAT TTT TACT T-T TAT TAT
1 TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TA-T TAT TAT TAT
* *
76030578 TTT TAT TAT TAC TAT T
1 TAT TAT TAT TAT TAT T
76030594 GTATTACTAC
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
2 4 0.09
3 39 0.83
4 4 0.09
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (3 bp):
TAT
Found at i:76030548 original size:24 final size:24
Alignment explanation
Indices: 76030521--76030593 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
76030511 CATATGCATG
**
76030521 TTTCATTATTGCTATTATTATTAT
1 TTTCATTATTATTATTATTATTAT
* *
76030545 TTTCTTTATTATTATTATTTTTACT
1 TTTCATTATTATTATTATTATTA-T
* *
76030570 TTT-ATTATTTTTATTATTACTAT
1 TTTCATTATTATTATTATTATTAT
76030593 T
1 T
76030594 GTATTACTAC
Statistics
Matches: 40, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
23 2 0.05
24 34 0.85
25 4 0.10
ACGTcount: A:0.23, C:0.07, G:0.01, T:0.68
Consensus pattern (24 bp):
TTTCATTATTATTATTATTATTAT
Found at i:76030556 original size:18 final size:20
Alignment explanation
Indices: 76030533--76030590 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 20
76030523 TCATTATTGC
76030533 TATTATTATTATTTT-C-TT
1 TATTATTATTATTTTACTTT
76030551 TATTATTATTATTTTTACTTT
1 TATTATTATTA-TTTTACTTT
*
76030572 TATTATTTTTATTATTACT
1 TATTATTATTATT-TTACT
76030591 ATTGTATTAC
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
18 11 0.31
19 4 0.11
20 3 0.09
21 17 0.49
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (20 bp):
TATTATTATTATTTTACTTT
Found at i:76030567 original size:15 final size:15
Alignment explanation
Indices: 76030535--76030593 Score: 77
Period size: 15 Copynumber: 3.9 Consensus size: 15
76030525 ATTATTGCTA
76030535 TTATTATTATT-TTCT
1 TTATTATTATTATT-T
76030550 TTATTATTATTATTT
1 TTATTATTATTATTT
76030565 TTACTT-TTATTATTT
1 TTA-TTATTATTATTT
*
76030580 TTATTATTACTATT
1 TTATTATTATTATT
76030594 GTATTACTAC
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
14 2 0.05
15 34 0.85
16 4 0.10
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (15 bp):
TTATTATTATTATTT
Found at i:76033641 original size:17 final size:18
Alignment explanation
Indices: 76033619--76033661 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 18
76033609 TTGTGTGGTT
76033619 GGCCGTGTGCAAGACA-A
1 GGCCGTGTGCAAGACATA
*
76033636 GGCCGTGCGCAAGACATA
1 GGCCGTGTGCAAGACATA
76033654 -GCCGTGTG
1 GGCCGTGTG
76033662 GTGCCATGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 22 0.96
18 1 0.04
ACGTcount: A:0.23, C:0.26, G:0.37, T:0.14
Consensus pattern (18 bp):
GGCCGTGTGCAAGACATA
Found at i:76041371 original size:13 final size:12
Alignment explanation
Indices: 76041348--76041377 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
76041338 GACTTAAATT
76041348 AGAAAAAAATAA
1 AGAAAAAAATAA
76041360 AGAAATAAAATAA
1 AGAAA-AAAATAA
76041373 AGAAA
1 AGAAA
76041378 GGGAACTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.80, C:0.00, G:0.10, T:0.10
Consensus pattern (12 bp):
AGAAAAAAATAA
Found at i:76046632 original size:40 final size:41
Alignment explanation
Indices: 76046587--76046687 Score: 150
Period size: 40 Copynumber: 2.4 Consensus size: 41
76046577 GCATTTGACG
76046587 CAGGTTAGAGCTGTATATATATATATATA-TATTTGGTACA
1 CAGGTTAGAGCTGTATATATATATATATATTATTTGGTACA
*
76046627 CAGGTTAGAGCTGTATATATATATATATATTTTTTTTTTGGTACA
1 CAGGTTAGAGCTGTATATATATATATATA----TTATTTGGTACA
76046672 CAGGTTAGAGCTGTAT
1 CAGGTTAGAGCTGTAT
76046688 TTTTTTTTGA
Statistics
Matches: 55, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
40 29 0.53
45 26 0.47
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.43
Consensus pattern (41 bp):
CAGGTTAGAGCTGTATATATATATATATATTATTTGGTACA
Found at i:76046693 original size:30 final size:30
Alignment explanation
Indices: 76046657--76046715 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
76046647 ATATATATAT
* *
76046657 TTTTTTTTTGGTACACAGGTTAGAGCTGTA
1 TTTTTTTTTGATACACAGGCTAGAGCTGTA
76046687 TTTTTTTTTGATACACAGGCTAGAGCTGT
1 TTTTTTTTTGATACACAGGCTAGAGCTGT
76046716 TCATAAGCTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.20, C:0.12, G:0.22, T:0.46
Consensus pattern (30 bp):
TTTTTTTTTGATACACAGGCTAGAGCTGTA
Found at i:76055840 original size:29 final size:29
Alignment explanation
Indices: 76055798--76055885 Score: 176
Period size: 29 Copynumber: 3.0 Consensus size: 29
76055788 AAAGATAAAC
76055798 TTGAAACATTGTTTGATGATAATTTCGAT
1 TTGAAACATTGTTTGATGATAATTTCGAT
76055827 TTGAAACATTGTTTGATGATAATTTCGAT
1 TTGAAACATTGTTTGATGATAATTTCGAT
76055856 TTGAAACATTGTTTGATGATAATTTCGAT
1 TTGAAACATTGTTTGATGATAATTTCGAT
76055885 T
1 T
76055886 CAGGATCTAT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 59 1.00
ACGTcount: A:0.31, C:0.07, G:0.17, T:0.45
Consensus pattern (29 bp):
TTGAAACATTGTTTGATGATAATTTCGAT
Found at i:76056310 original size:6 final size:6
Alignment explanation
Indices: 76056263--76056292 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
76056253 GGCAACCCAA
76056263 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
76056293 ATAAATTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTAT
Found at i:76059201 original size:25 final size:24
Alignment explanation
Indices: 76059143--76059262 Score: 82
Period size: 25 Copynumber: 4.7 Consensus size: 24
76059133 TTATTCTTAT
* *
76059143 TTATTTTATATATATATTTT-TCA
1 TTATTTTATTTATATATTTTAACA
*
76059166 TATATTGTTATTTATATTATTTTAACC
1 T-TATT-TTATTTATA-TATTTTAACA
* *
76059193 TTATTTTATATTATATATTATAAAA
1 TTATTTTAT-TTATATATTTTAACA
* *
76059218 TTATTTTATTATAAATATTATT-ATA
1 TTATTTTATT-TATATATT-TTAACA
76059243 TATATTATTATTTATTATAT
1 T-TATT-TTATTTA-TATAT
76059263 ATTATTTTTC
Statistics
Matches: 77, Mismatches: 10, Indels: 16
0.75 0.10 0.16
Matches are distributed among these distances:
23 1 0.01
24 5 0.06
25 38 0.49
26 22 0.29
27 11 0.14
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.61
Consensus pattern (24 bp):
TTATTTTATTTATATATTTTAACA
Found at i:76059209 original size:7 final size:7
Alignment explanation
Indices: 76059194--76059267 Score: 57
Period size: 7 Copynumber: 10.9 Consensus size: 7
76059184 ATTTTAACCT
*
76059194 TATTTTA
1 TATTATA
76059201 TATTATA
1 TATTATA
76059208 TATTATAA
1 TATTAT-A
* *
76059216 AATTATTT
1 TATTA-TA
76059224 TATTATA
1 TATTATA
*
76059231 -AATAT-
1 TATTATA
76059236 TATTATA
1 TATTATA
76059243 TA-TAT-
1 TATTATA
*
76059248 TATTATT
1 TATTATA
76059255 TATTATA
1 TATTATA
76059262 TATTAT
1 TATTAT
76059268 TTTTCTCAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
5 2 0.04
6 14 0.26
7 27 0.51
8 9 0.17
9 1 0.02
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
TATTATA
Found at i:76059239 original size:17 final size:16
Alignment explanation
Indices: 76059208--76059270 Score: 69
Period size: 15 Copynumber: 4.1 Consensus size: 16
76059198 TTATATTATA
*
76059208 TATTATAAAATTATTT
1 TATTATAATATTATTT
*
76059224 TATTATAAATATTATTA
1 TATTAT-AATATTATTT
*
76059241 TA-TATATTATTA-TT
1 TATTATAATATTATTT
76059255 TATTAT-ATATTATTT
1 TATTATAATATTATTT
76059270 T
1 T
76059271 TCTCAAATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
14 8 0.21
15 12 0.31
16 9 0.23
17 10 0.26
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
TATTATAATATTATTT
Found at i:76059240 original size:12 final size:12
Alignment explanation
Indices: 76059223--76059253 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
76059213 TAAAATTATT
76059223 TTATTATAAATA
1 TTATTATAAATA
*
76059235 TTATTATATATA
1 TTATTATAAATA
76059247 TTATTAT
1 TTATTAT
76059254 TTATTATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
TTATTATAAATA
Found at i:76059253 original size:32 final size:30
Alignment explanation
Indices: 76059193--76059268 Score: 84
Period size: 32 Copynumber: 2.5 Consensus size: 30
76059183 TATTTTAACC
*
76059193 TTATTTTATATTA-TATATTATAAAATTATT
1 TTATTATATATTATTATATTATAAAATTA-T
**
76059223 TTATTATAAATATTATTATA-TATATTATTAT
1 TTATTAT--ATATTATTATATTATAAAATTAT
76059254 TTATTATATATTATT
1 TTATTATATATTATT
76059269 TTTCTCAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
29 8 0.20
30 6 0.15
31 8 0.20
32 14 0.35
33 4 0.10
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (30 bp):
TTATTATATATTATTATATTATAAAATTAT
Found at i:76059319 original size:30 final size:28
Alignment explanation
Indices: 76059193--76059358 Score: 76
Period size: 28 Copynumber: 5.6 Consensus size: 28
76059183 TATTTTAACC
* **
76059193 TTATTTT-ATATTATATATTATAAAATTA
1 TTATTTTCATA-TATATTTTATATTATTA
*
76059221 TT-TTATT-ATAAATATTATTATATATATTA
1 TTATT-TTCATATATATT-TTATAT-TATTA
* *
76059250 TTATTTATTATATATTATTTTTCTCAAATTATTA
1 TTATTT-TCATATA-TA--TTT-T-ATATTATTA
76059284 TTATTTTACATCAT-T-TTTTATATTATTA
1 TTATTTT-CAT-ATATATTTTATATTATTA
*
76059312 CTATATTTTCATATATATTTTATATTTACTAA
1 -T-TATTTTCATATATATTTTATA-TTA-TTA
76059344 TTA-TTT-ATATATATT
1 TTATTTTCATATATATT
76059359 GTTTTCCATA
Statistics
Matches: 110, Mismatches: 9, Indels: 38
0.70 0.06 0.24
Matches are distributed among these distances:
27 6 0.05
28 31 0.28
29 16 0.15
30 21 0.19
31 8 0.07
32 4 0.04
33 3 0.03
34 16 0.15
35 5 0.05
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (28 bp):
TTATTTTCATATATATTTTATATTATTA
Found at i:76059353 original size:28 final size:30
Alignment explanation
Indices: 76059299--76059358 Score: 81
Period size: 28 Copynumber: 2.1 Consensus size: 30
76059289 TTACATCATT
76059299 TTTTATATTATTACTATATTTTCATATATA
1 TTTTATATTATTACTATATTTTCATATATA
*
76059329 TTTTATA-T-TTACTA-ATTATTTATATATA
1 TTTTATATTATTACTATATT-TTCATATATA
76059357 TT
1 TT
76059359 GTTTTCCATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
27 3 0.11
28 17 0.61
29 1 0.04
30 7 0.25
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (30 bp):
TTTTATATTATTACTATATTTTCATATATA
Found at i:76059641 original size:19 final size:19
Alignment explanation
Indices: 76059584--76059641 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 19
76059574 TTTAAACTCA
*
76059584 TATTATATACACATTTCA-T
1 TATTATATAC-TATTTCATT
* *
76059603 TATTATTTATTTATTT-ATT
1 TATTATATA-CTATTTCATT
76059622 TATTATATACTATTTCATT
1 TATTATATACTATTTCATT
76059641 T
1 T
76059642 TAAATTAATA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
18 6 0.19
19 25 0.81
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.60
Consensus pattern (19 bp):
TATTATATACTATTTCATT
Found at i:76068968 original size:10 final size:10
Alignment explanation
Indices: 76068928--76068961 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
76068918 TGTAATATAA
*
76068928 CATATCATAT
1 CATAGCATAT
*
76068938 CGTAGCATAT
1 CATAGCATAT
76068948 CATAGCATAT
1 CATAGCATAT
76068958 CATA
1 CATA
76068962 TCGTATCCTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (10 bp):
CATAGCATAT
Found at i:76069230 original size:7 final size:7
Alignment explanation
Indices: 76069204--76069238 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
76069194 CATATCTTAC
76069204 TCATATA
1 TCATATA
*
76069211 TCATACA
1 TCATATA
76069218 TACATATA
1 T-CATATA
76069226 TCATATA
1 TCATATA
76069233 TCATAT
1 TCATAT
76069239 GGCATGCATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 19 0.76
8 6 0.24
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (7 bp):
TCATATA
Found at i:76082367 original size:15 final size:15
Alignment explanation
Indices: 76082347--76082397 Score: 61
Period size: 15 Copynumber: 3.4 Consensus size: 15
76082337 AAAAAATTTA
76082347 ATAAATTTAAAATAT
1 ATAAATTTAAAATAT
*
76082362 ATAAATTATTAAATAT
1 ATAAATT-TAAAATAT
76082378 -TAAA-TTAAAATAAT
1 ATAAATTTAAAAT-AT
76082392 ATAAAT
1 ATAAAT
76082398 ATTTTTAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
13 5 0.17
14 3 0.10
15 15 0.50
16 7 0.23
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
ATAAATTTAAAATAT
Found at i:76082406 original size:32 final size:32
Alignment explanation
Indices: 76082348--76082426 Score: 85
Period size: 32 Copynumber: 2.5 Consensus size: 32
76082338 AAAAATTTAA
*
76082348 TAAATTTAAAAT-ATAT-AAATTATT-AAATAT
1 TAAA-TTAAAATAATATAAAATTATTAAAAAAT
*
76082378 TAAATTAAAATAATATAAATATTTTTAAAAAAT
1 TAAATTAAAATAATATAAA-ATTATTAAAAAAT
*
76082411 TAAA-AAAAATAATATA
1 TAAATTAAAATAATATA
76082427 GACGAACTTA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
29 7 0.17
30 8 0.19
31 2 0.05
32 16 0.38
33 9 0.21
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (32 bp):
TAAATTAAAATAATATAAAATTATTAAAAAAT
Found at i:76083829 original size:13 final size:13
Alignment explanation
Indices: 76083807--76083863 Score: 57
Period size: 12 Copynumber: 4.5 Consensus size: 13
76083797 AAATTAGCCA
76083807 ATTTTT-TATTTT
1 ATTTTTATATTTT
76083819 ATTTTTATATTTT
1 ATTTTTATATTTT
*
76083832 -TGTTTTA-ATTTA
1 AT-TTTTATATTTT
*
76083844 ATTTTTAGATTTT
1 ATTTTTATATTTT
76083857 AATTTTT
1 -ATTTTT
76083864 CTTTTGTTTG
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
12 16 0.42
13 16 0.42
14 6 0.16
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.74
Consensus pattern (13 bp):
ATTTTTATATTTT
Found at i:76083837 original size:25 final size:25
Alignment explanation
Indices: 76083809--76083856 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
76083799 ATTAGCCAAT
* * *
76083809 TTTTTATTTTATTTTTATATTTTTG
1 TTTTAATTTAATTTTTAGATTTTTG
76083834 TTTTAATTTAATTTTTAGATTTT
1 TTTTAATTTAATTTTTAGATTTT
76083857 AATTTTTCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.04, T:0.75
Consensus pattern (25 bp):
TTTTAATTTAATTTTTAGATTTTTG
Found at i:76083856 original size:19 final size:18
Alignment explanation
Indices: 76083822--76083861 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
76083812 TTATTTTATT
76083822 TTTATATTTTTGTTTTAA
1 TTTATATTTTTGTTTTAA
76083840 TTTA-ATTTTTAGATTTTAA
1 TTTATATTTTT-G-TTTTAA
76083859 TTT
1 TTT
76083862 TTCTTTTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 6 0.30
18 5 0.25
19 9 0.45
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (18 bp):
TTTATATTTTTGTTTTAA
Found at i:76083862 original size:25 final size:25
Alignment explanation
Indices: 76083809--76083862 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
76083799 ATTAGCCAAT
* * * **
76083809 TTTTTATTTTATTTTTATATTTTTG
1 TTTTAATTTAATTTTTAGATTTTAA
76083834 TTTTAATTTAATTTTTAGATTTTAA
1 TTTTAATTTAATTTTTAGATTTTAA
76083859 TTTT
1 TTTT
76083863 TCTTTTGTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.74
Consensus pattern (25 bp):
TTTTAATTTAATTTTTAGATTTTAA
Found at i:76090632 original size:5 final size:5
Alignment explanation
Indices: 76090622--76090715 Score: 61
Period size: 5 Copynumber: 18.2 Consensus size: 5
76090612 TTATTATTTA
*
76090622 TTATT TTATT TTATT TTATT CTT-TCT TTCTT TTATT TTATTT TTAGTAT
1 TTATT TTATT TTATT TTATT -TTAT-T TTATT TTATT TTA-TT TTA-T-T
* * *
76090671 TTATT CTACTT ATTA-T TTATC TTATT TTA-T TT-TG TTATT TTATT T
1 TTATT TTA-TT -TTATT TTATT TTATT TTATT TTATT TTATT TTATT T
76090716 AGCTTGATTA
Statistics
Matches: 71, Mismatches: 8, Indels: 20
0.72 0.08 0.20
Matches are distributed among these distances:
4 8 0.11
5 44 0.62
6 13 0.18
7 6 0.08
ACGTcount: A:0.18, C:0.06, G:0.02, T:0.73
Consensus pattern (5 bp):
TTATT
Found at i:76090677 original size:26 final size:25
Alignment explanation
Indices: 76090611--76090715 Score: 81
Period size: 26 Copynumber: 4.1 Consensus size: 25
76090601 ATTTACCCTA
*
76090611 TTTATTATTTATTATTTTATTTTAT
1 TTTATTATTTATTCTTTTATTTTAT
* *
76090636 TTTATTCTTTCTTTCTTTTATTTTATT
1 TTTATTATTT-ATTCTTTTATTTTA-T
* *
76090663 TTTAGTATTTATTCTACTTA--TTAT
1 TTTATTATTTATTCT-TTTATTTTAT
*
76090687 TTATCTTATTTTATT-TTGTTATTTTAT
1 TT-TATTA-TTTATTCTT-TTATTTTAT
76090714 TT
1 TT
76090716 AGCTTGATTA
Statistics
Matches: 62, Mismatches: 10, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
24 3 0.05
25 19 0.31
26 22 0.35
27 18 0.29
ACGTcount: A:0.19, C:0.06, G:0.02, T:0.73
Consensus pattern (25 bp):
TTTATTATTTATTCTTTTATTTTAT
Found at i:76098012 original size:31 final size:31
Alignment explanation
Indices: 76097974--76098043 Score: 95
Period size: 31 Copynumber: 2.3 Consensus size: 31
76097964 GTAAAATTTA
* *
76097974 AAAAAATATAGAGACTAAAATTAACCAACTG
1 AAAAAATATAGAAACTAAAATTAACCAAATG
* * *
76098005 AAAAAATATAGAAATTAAAATTAATCAAATT
1 AAAAAATATAGAAACTAAAATTAACCAAATG
76098036 AAAAAATA
1 AAAAAATA
76098044 ATTATAAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.64, C:0.07, G:0.06, T:0.23
Consensus pattern (31 bp):
AAAAAATATAGAAACTAAAATTAACCAAATG
Found at i:76099982 original size:20 final size:22
Alignment explanation
Indices: 76099945--76099988 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
76099935 TAAAATCACA
* *
76099945 TTTATTTTTTATATTAATT-TT
1 TTTATTTTATACATTAATTATT
76099966 TTTATTTTATACA-TAATTATT
1 TTTATTTTATACATTAATTATT
76099987 TT
1 TT
76099989 CACTTGCATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.70
Consensus pattern (22 bp):
TTTATTTTATACATTAATTATT
Found at i:76104000 original size:42 final size:42
Alignment explanation
Indices: 76103941--76104057 Score: 130
Period size: 42 Copynumber: 2.8 Consensus size: 42
76103931 AGCTCATAGA
*
76103941 ATGCCAAC-GTCCCAGACAAGGTCTTA-ATGTAATCAAATATCT
1 ATGCC-ACTGTCCCAGACAAGGTCTTACATGTAATCAAATA-CG
* * * *
76103983 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCATATACG
1 ATGCCACTGTCCCAGACAAGGTCTTACATGTAATCAAATACG
* * *
76104025 ATGTCAATGTCCCAGACATGGTCTTACATGTAA
1 ATGCCACTGTCCCAGACAAGGTCTTACATGTAA
76104058 ATCTCAAACC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
41 2 0.03
42 51 0.81
43 10 0.16
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (42 bp):
ATGCCACTGTCCCAGACAAGGTCTTACATGTAATCAAATACG
Found at i:76104093 original size:86 final size:84
Alignment explanation
Indices: 76103949--76104104 Score: 208
Period size: 86 Copynumber: 1.8 Consensus size: 84
76103939 GAATGCCAAC
* * *
76103949 GTCCCAGACAAGGTCTTAATGTAATCAAATATCTATGCCACTGTCCCAGACAGGGTCTTACACGA
1 GTCCCAGACAAGGTCTTAATGTAATCAAATACCGATGCCAATGTCCCAGACAGGGTCTTACACGA
76104014 AATCATATACGATGTCAAT
66 AATCATATACGATGTCAAT
* * *
76104033 GTCCCAGACATGGTCTTACATGTAAATCTCAA-ACCGATGCCAATGTCCTAGAC-GTGGTCTTAC
1 GTCCCAGACAAGGTCTTA-ATGT-AATC-AAATACCGATGCCAATGTCCCAGACAG-GGTCTTAC
76104096 ACGAAATCA
62 ACGAAATCA
76104105 CATATCGGAA
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
84 17 0.27
85 5 0.08
86 38 0.61
87 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (84 bp):
GTCCCAGACAAGGTCTTAATGTAATCAAATACCGATGCCAATGTCCCAGACAGGGTCTTACACGA
AATCATATACGATGTCAAT
Found at i:76115213 original size:44 final size:42
Alignment explanation
Indices: 76115152--76115316 Score: 154
Period size: 43 Copynumber: 3.9 Consensus size: 42
76115142 TTTCGATATG
* * *
76115152 TGATTTCATGTAAGACCACGTCTGGGACGTTGTCATCG-ATT
1 TGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGTATT
* *
76115193 TGAGATTTACGTGTAAGACCATGTCTAGGACATTGGCATCGTATT
1 T--GATTT-CGTGTAAGACCACGTCTGGGACATTGGCATCGTATT
* * * *
76115238 TGATTTCGTGTAAGACC-CTGTCTGGGATAGTGGCATTGATAGT
1 TGATTTCGTGTAAGACCAC-GTCTGGGACATTGGCATCG-TATT
* * * *
76115281 TGATTACATGTAAGACCAAGTCTGGGACGTTGGCAT
1 TGATTTCGTGTAAGACCACGTCTGGGACATTGGCAT
76115317 TGTAGAGCCT
Statistics
Matches: 100, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
41 1 0.01
42 26 0.26
43 42 0.42
44 27 0.27
45 4 0.04
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGTATT
Found at i:76121482 original size:18 final size:18
Alignment explanation
Indices: 76121432--76121482 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
76121422 ATAAATTTAA
76121432 AAATTTTTATAAATATTTT
1 AAATTTTTA-AAATATTTT
*
76121451 GAA-TTTTAAGAATATTTT
1 AAATTTTTAA-AATATTTT
76121469 AAATTTTTAAAATA
1 AAATTTTTAAAATA
76121483 AATTTTTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
17 1 0.04
18 19 0.68
19 8 0.29
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (18 bp):
AAATTTTTAAAATATTTT
Found at i:76122262 original size:61 final size:60
Alignment explanation
Indices: 76122184--76122358 Score: 166
Period size: 61 Copynumber: 2.9 Consensus size: 60
76122174 ATTGTTATTA
76122184 AATTTTAACA-AGATTATTATTAAATATATTTTAATAAAAATAATAATAAATAATTTAAT-C
1 AATTTTAACATA-ATTATTATTAAATATATTTTAATAAAAATAATAAT-AATAATTTAATAC
* *
76122244 ATATTTTAACATAATTATTATTAAAT-TCAATTTAAT-GAAATAAT-AT-ATAATTTAATAAC
1 A-ATTTTAACATAATTATTATTAAATAT-ATTTTAATAAAAATAATAATAATAATTTAAT-AC
* * * *
76122303 AATTTTAATATAAGTATTATTAAA-ATATGAATTAATAAAAAATCATAATATATAAT
1 AATTTTAACATAATTATTATTAAATATAT--TTTAAT-AAAAATAATAATA-ATAAT
76122359 ATTATAAAAA
Statistics
Matches: 94, Mismatches: 8, Indels: 22
0.76 0.06 0.18
Matches are distributed among these distances:
57 11 0.12
58 22 0.23
59 9 0.10
60 9 0.10
61 35 0.37
62 3 0.03
64 5 0.05
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (60 bp):
AATTTTAACATAATTATTATTAAATATATTTTAATAAAAATAATAATAATAATTTAATAC
Found at i:76134980 original size:19 final size:19
Alignment explanation
Indices: 76134948--76135010 Score: 67
Period size: 19 Copynumber: 3.4 Consensus size: 19
76134938 CCAAACTACT
**
76134948 TTAAAATATGTAAATATAA
1 TTAAAATAAATAAATATAA
*
76134967 TGT-AAATAAATAAATAAAA
1 T-TAAAATAAATAAATATAA
76134986 TTAAAATAAAT-AATATAA
1 TTAAAATAAATAAATATAA
*
76135004 TAAAAAT
1 TTAAAAT
76135011 GATATTAATT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
18 13 0.35
19 23 0.62
20 1 0.03
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (19 bp):
TTAAAATAAATAAATATAA
Found at i:76140747 original size:18 final size:18
Alignment explanation
Indices: 76140724--76140760 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
76140714 AATTTTAAAA
*
76140724 TTATGGGCCCACATGCCC
1 TTATGGGCCCACACGCCC
76140742 TTATGGGCCCACACGCCC
1 TTATGGGCCCACACGCCC
76140760 T
1 T
76140761 GACCCAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.16, C:0.41, G:0.22, T:0.22
Consensus pattern (18 bp):
TTATGGGCCCACACGCCC
Found at i:76145928 original size:15 final size:15
Alignment explanation
Indices: 76145894--76145928 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
76145884 GTCTCAAAGA
*
76145894 AATCCCAGTTCAGAC
1 AATCCCAGTTCAAAC
*
76145909 GATCCCAGTTCAAAC
1 AATCCCAGTTCAAAC
76145924 AATCC
1 AATCC
76145929 GGCTGCGTAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.34, G:0.11, T:0.20
Consensus pattern (15 bp):
AATCCCAGTTCAAAC
Found at i:76147988 original size:21 final size:22
Alignment explanation
Indices: 76147943--76147996 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
76147933 TGTAGGACTC
*
76147943 ACACGCCCGTGTGGTCCAAGGG
1 ACACGCCCGTGTGGACCAAGGG
**
76147965 ACACGCCCGTGT-GACCCTGGG
1 ACACGCCCGTGTGGACCAAGGG
*
76147986 ACATGCCCGTG
1 ACACGCCCGTG
76147997 CTACAGGTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 16 0.57
22 12 0.43
ACGTcount: A:0.17, C:0.35, G:0.33, T:0.15
Consensus pattern (22 bp):
ACACGCCCGTGTGGACCAAGGG
Found at i:76149813 original size:19 final size:20
Alignment explanation
Indices: 76149785--76149824 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
76149775 AGCACATGTA
*
76149785 TTCATAAAA-TTCAGAATTT
1 TTCATAAAATTTCACAATTT
*
76149804 TTCATCAAATTTCACAATTT
1 TTCATAAAATTTCACAATTT
76149824 T
1 T
76149825 ACATTTTAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.38, C:0.15, G:0.03, T:0.45
Consensus pattern (20 bp):
TTCATAAAATTTCACAATTT
Found at i:76152416 original size:43 final size:43
Alignment explanation
Indices: 76152368--76152531 Score: 151
Period size: 43 Copynumber: 3.8 Consensus size: 43
76152358 TTCGAGAGGA
* * *
76152368 GATTACTTGTAAAACCATGTCTGGGATATTGGCATTGTAT-TG
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTATATG
*
76152410 TGATTACGTGTAAGACCATGTCT-GGAGCATTGGTATCAT-TATATG
1 -GATTACGTGTAAGACCATGTCTGGGA-CATTGGCAT--TGTATATG
*
76152455 AATT-CGTGTAAGACCATGTCTGGGACATTGGCATTG-ATATG
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTATATG
* * * * *
76152496 AGATAACATGTAATACCATATCTGGGATA-TGGCATT
1 -GATTACGTGTAAGACCATGTCTGGGACATTGGCATT
76152532 ATTTGAGCTT
Statistics
Matches: 101, Mismatches: 12, Indels: 17
0.78 0.09 0.13
Matches are distributed among these distances:
41 6 0.06
42 12 0.12
43 71 0.70
44 9 0.09
45 3 0.03
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.34
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTATATG
Found at i:76156234 original size:389 final size:388
Alignment explanation
Indices: 76155528--76156272 Score: 927
Period size: 389 Copynumber: 1.9 Consensus size: 388
76155518 GTAATAGCTT
* * *
76155528 GTTTTTAGGTTAATCGGAACAGTGGTTTCGGGACCGCAATCTAAAGTCAAAATATTTATTTTATT
1 GTTTTTAGGTTAATCAGAACAGTGGTTTCGAGACCACAATCTAAAGTCAAAATATTTATTTTATT
* *
76155593 ATTTTATTAAGGTTTACAGTATGATAGAATGTTTCGTGTGAAAATTTCGTAAAGAAATTTTATCA
66 ATTTTATTAAGGTTTACAGTATGATAGAATGTTTCATGTGAAAATTTCGTAAAGAAATTTTACCA
* *
76155658 TTTGAATGGTTAATTCGGTAAAAAAGACTAAATCGCGTTAAGCGTAAAAGTTGAATTCTATAAGT
131 TTTGAATGGTTAATTCGGTAAAAAAGACTAAATCGCGTAAAGCGTAAAAGTCGAATTCTATAAGT
* * * * * * * * *
76155723 TAAAGGTATTAAATGGCTATGAAATTAAATAATGGGAGTCCTTAAGTGGTAGTTATCCCATAAAT
196 GAAAGGAATCAAATAGCTAAGAAATGAAATAATGGGAGTACTTAAGTGGTAGATATACCAT-AAT
* * * * * * * *
76155788 TTTGATAGTGGAATTCTATGCCTTGGTATTGTTGAAATTTATGATGCTATTAAAGGTTAGTTTTG
260 TTTAATAGTGGAATACTATGACATGGTATAGATGAAATTTATAATGCTATTAAAGGTTAGTTTAG
*
76155853 TAAATTGGTTAATAAAGATTA-AATAAATAAAATCAAAGTCATTATTTTGTATATGTAATATCCC
325 TAAAATGGTTAATAAAG-TTATAATAAATAAAATCAAAGTCATTATTTTGTATATGTAATATCCC
* *
76155917 GTTTTTAGGGTTAATCAGAATAGTGGTTTCGAGACCACAAT-TCGAAGTCAAAATATTTATTTTA
1 GTTTTTA-GGTTAATCAGAACAGTGGTTTCGAGACCACAATCT-AAAGTCAAAATATTTATTTTA
76155981 TTATTTTATTAAGGTTTACAGTATGATAGAAT-TTTCATGTGAAAATTTCGTAAAGAAATTTTAC
64 TTATTTTATTAAGGTTTACAGTATGATAGAATGTTTCATGTGAAAATTTCGTAAAGAAATTTTAC
* * *
76156045 CGTTTGAGTGGTTAATTCGGTAAAAAGGACTAAATCGCAG-AAAGCGTAAAAGTCGAATTCTATA
129 CATTTGAATGGTTAATTCGGTAAAAAAGACTAAATCGC-GTAAAGCGTAAAAGTCGAATTCTATA
* * * *
76156109 AGTGAAATGAATCAATTAGCTAAAGAAATGAAATGAT-GG-GTACTTGCA-TGGTAGATATACCA
193 AGTGAAAGGAATCAAATAGCT-AAGAAATGAAATAATGGGAGTACTT-AAGTGGTAGATATACCA
* * * * *
76156171 T-TTTTATAATGAGTGG-ATAACTTTGGACAT-GTATAAGATG-GATTTTTAATGTTAGTTAAAG
256 TAATTT-TAAT-AGTGGAAT-ACTAT-GACATGGTAT-AGATGAAATTTATAATGCTA-TTAAAG
* *
76156232 GTTAGTTTAGTAAAATGGTTATTAAAGTTATAATAGATAAA
315 GTTAGTTTAGTAAAATGGTTAATAAAGTTATAATAAATAAA
76156273 TAAAATAAAA
Statistics
Matches: 303, Mismatches: 41, Indels: 24
0.82 0.11 0.07
Matches are distributed among these distances:
386 3 0.01
387 5 0.02
388 43 0.14
389 158 0.52
390 94 0.31
ACGTcount: A:0.36, C:0.08, G:0.19, T:0.37
Consensus pattern (388 bp):
GTTTTTAGGTTAATCAGAACAGTGGTTTCGAGACCACAATCTAAAGTCAAAATATTTATTTTATT
ATTTTATTAAGGTTTACAGTATGATAGAATGTTTCATGTGAAAATTTCGTAAAGAAATTTTACCA
TTTGAATGGTTAATTCGGTAAAAAAGACTAAATCGCGTAAAGCGTAAAAGTCGAATTCTATAAGT
GAAAGGAATCAAATAGCTAAGAAATGAAATAATGGGAGTACTTAAGTGGTAGATATACCATAATT
TTAATAGTGGAATACTATGACATGGTATAGATGAAATTTATAATGCTATTAAAGGTTAGTTTAGT
AAAATGGTTAATAAAGTTATAATAAATAAAATCAAAGTCATTATTTTGTATATGTAATATCCC
Found at i:76157255 original size:43 final size:43
Alignment explanation
Indices: 76157171--76157344 Score: 135
Period size: 43 Copynumber: 4.1 Consensus size: 43
76157161 GATGTCATTA
* * *
76157171 CATGTAAGACCATGTCTGGAACATTGGCATTGTATTATGATTAT
1 CATGTAAGACCATGTCTGGGACATTGACATCGTATTATGATT-T
* *
76157215 -GTGTAAGACCATGTTTGGGACATTGACATCGTTATT-TGATTT
1 CATGTAAGACCATGTCTGGGACATTGACATCG-TATTATGATTT
* * * * * **
76157257 CATGTAAGACCCTGCCTGGGACAGTGACATC-AATATGTGATAA
1 CATGTAAGACCATGTCTGGGACATTGACATCGTAT-TATGATTT
* * * *
76157300 CATGTAAGACCATATCTGGGATA-TGGCATTGTATTA-GATTT
1 CATGTAAGACCATGTCTGGGACATTGACATCGTATTATGATTT
76157341 -ATGT
1 CATGT
76157345 GATATTCGAG
Statistics
Matches: 102, Mismatches: 23, Indels: 14
0.73 0.17 0.10
Matches are distributed among these distances:
40 4 0.04
41 5 0.05
42 8 0.08
43 81 0.79
44 4 0.04
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.34
Consensus pattern (43 bp):
CATGTAAGACCATGTCTGGGACATTGACATCGTATTATGATTT
Found at i:76158477 original size:21 final size:21
Alignment explanation
Indices: 76158447--76158486 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
76158437 ATGGTTGAAG
76158447 ATGAAATGGCATGATTTGTAT
1 ATGAAATGGCATGATTTGTAT
* *
76158468 ATGAATTGGCATGTTTTGT
1 ATGAAATGGCATGATTTGT
76158487 TTGCCTATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.05, G:0.25, T:0.42
Consensus pattern (21 bp):
ATGAAATGGCATGATTTGTAT
Found at i:76159972 original size:43 final size:44
Alignment explanation
Indices: 76159911--76160076 Score: 153
Period size: 43 Copynumber: 3.9 Consensus size: 44
76159901 GCCGGGACAA
* * *
76159911 GATTACAG-GTAAAACCATGTTTGGGATATTGGCATTGTAT-TGT
1 GATTAC-GTGTAAGACCATGTCTGGGACATTGGCATTGTATATGT
* * *
76159954 GATTACGTGTAAGACCATGTCTGGGACATTGGTATCGT-TATAT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTATATGT
** * *
76159997 GATTTTGTGTATGACCATGTCTGGGACATTGGCATTG-ATATGA
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTATATGT
* * * * *
76160040 GATAACATGTAAGACCATATCTAGGATA-TGGCATTGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGT
76160077 TTGAGCTTTA
Statistics
Matches: 98, Mismatches: 21, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
42 10 0.10
43 88 0.90
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.35
Consensus pattern (44 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTATATGT
Found at i:76167436 original size:46 final size:46
Alignment explanation
Indices: 76167370--76167689 Score: 507
Period size: 46 Copynumber: 7.0 Consensus size: 46
76167360 TTATCTTTGA
* * * * * *
76167370 CATGATGCCATAGTACCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATAT
* *
76167416 CATGTTGCCATGGTATCTTTCAACCATGGTCTTCTTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
76167462 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
76167508 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
* *
76167554 CATGTTGCCATGGTATCTGTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
*
76167600 CACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
**
76167646 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCAT
76167690 TTTAGAAAAC
Statistics
Matches: 257, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 4 0.02
46 253 0.98
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
Found at i:76170180 original size:30 final size:31
Alignment explanation
Indices: 76170113--76170171 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
76170103 CACTCTTAAA
** *
76170113 ATATTTACACTCTTAGTCCTTCAAATTTTTC
1 ATATTTACACTCTTAACCCCTCAAATTTTTC
76170144 ATATTTACACT-TTAACCCCTCAAATTTT
1 ATATTTACACTCTTAACCCCTCAAATTTT
76170172 GAGTATTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.29, C:0.24, G:0.02, T:0.46
Consensus pattern (31 bp):
ATATTTACACTCTTAACCCCTCAAATTTTTC
Found at i:76175493 original size:41 final size:41
Alignment explanation
Indices: 76175437--76175530 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
76175427 TTTTTTTTAG
*
76175437 AAAACGCTTCCAACTGGAAGCCTTTTCAAGTGATATGCAGA
1 AAAACGCTTCTAACTGGAAGCCTTTTCAAGTGATATGCAGA
*
76175478 AAAACGCTTCTAACTGGAAGCCTTTTCCAGTGATATGCAGA
1 AAAACGCTTCTAACTGGAAGCCTTTTCAAGTGATATGCAGA
76175519 AAAACGCTTCTA
1 AAAACGCTTCTA
76175531 GCAGAAAGCT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (41 bp):
AAAACGCTTCTAACTGGAAGCCTTTTCAAGTGATATGCAGA
Found at i:76175545 original size:41 final size:41
Alignment explanation
Indices: 76175437--76175545 Score: 146
Period size: 41 Copynumber: 2.7 Consensus size: 41
76175427 TTTTTTTTAG
* * *
76175437 AAAACGCTTCCAACTGGAAGCCTTTTCAAGTGATATGCAGA
1 AAAACGCTTCTAACAGAAAGCCTTTTCAAGTGATATGCAGA
* * *
76175478 AAAACGCTTCTAACTGGAAGCCTTTTCCAGTGATATGCAGA
1 AAAACGCTTCTAACAGAAAGCCTTTTCAAGTGATATGCAGA
* *
76175519 AAAACGCTTCTAGCAGAAAGCTTTTTC
1 AAAACGCTTCTAACAGAAAGCCTTTTC
76175546 TGCCATATTT
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 62 1.00
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (41 bp):
AAAACGCTTCTAACAGAAAGCCTTTTCAAGTGATATGCAGA
Found at i:76176595 original size:22 final size:22
Alignment explanation
Indices: 76176568--76176612 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
76176558 ACTATTTTGT
76176568 AAAGTGATTTTGGTTAATTTTA
1 AAAGTGATTTTGGTTAATTTTA
76176590 AAAGTGATTTTGGTTAATTTTA
1 AAAGTGATTTTGGTTAATTTTA
76176612 A
1 A
76176613 GTTTAAGGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49
Consensus pattern (22 bp):
AAAGTGATTTTGGTTAATTTTA
Found at i:76177133 original size:21 final size:21
Alignment explanation
Indices: 76177065--76177133 Score: 52
Period size: 21 Copynumber: 3.1 Consensus size: 21
76177055 TTGGCTTGAA
*
76177065 AAATGAATAAAACCATAGTTG
1 AAATGAATAAGACCATAGTTG
* *
76177086 AAA-GACACTATGGCACCATA-TCAG
1 AAATGA-A-TA-AG-ACCATAGT-TG
76177110 AAATGAATAAGACCATAGTTG
1 AAATGAATAAGACCATAGTTG
76177131 AAA
1 AAA
76177134 AACACTATTA
Statistics
Matches: 36, Mismatches: 5, Indels: 14
0.65 0.09 0.25
Matches are distributed among these distances:
20 2 0.06
21 14 0.39
22 4 0.11
23 3 0.08
24 11 0.31
25 2 0.06
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.20
Consensus pattern (21 bp):
AAATGAATAAGACCATAGTTG
Found at i:76177178 original size:46 final size:45
Alignment explanation
Indices: 76177065--76177370 Score: 357
Period size: 45 Copynumber: 6.8 Consensus size: 45
76177055 TTGGCTTGAA
* * *
76177065 AAATGAATAAAACCATAGTTGAAAGACACTATGGCACCATATCAG
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACCAG
* **
76177110 AAATGAATAAGACCATAGTTGAAAAACACTATTACACTATACCAG
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACCAG
* * * *
76177155 AAAACGAAAAAGACCATAGTTGAAA-AGCACTATGGCATTATACTAG
1 -AAATGAATAAGACCATAGTTGAAAGA-CACTATGGCACTATACCAG
* *
76177201 AAATGAATAAGACTATAGTTGAAAGACACTATGGCACTATACCGAA
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACC-AG
* * * *
76177247 AAATGAATAAGACAAGAGTTGAAAGACACTATGGCACTATGCCGG
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACCAG
** *
76177292 AAATGAATAAGACCATAGTTGAAAGACACTATGGCA-TCATGTCGG
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCACT-ATACCAG
* *
76177337 AAATAAATAAGACCAT-GTTTGAAAGACGCTATGG
1 AAATGAATAAGACCATAG-TTGAAAGACACTATGG
76177371 AATCCTTGAA
Statistics
Matches: 227, Mismatches: 28, Indels: 12
0.85 0.10 0.04
Matches are distributed among these distances:
44 2 0.01
45 146 0.64
46 79 0.35
ACGTcount: A:0.45, C:0.16, G:0.18, T:0.21
Consensus pattern (45 bp):
AAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACCAG
Found at i:76177325 original size:91 final size:91
Alignment explanation
Indices: 76177062--76177370 Score: 367
Period size: 91 Copynumber: 3.4 Consensus size: 91
76177052 TCATTGGCTT
* * *
76177062 GAAAAATGAATAAAACCATAGTTGAAAGACACTATGGCACCATATCAGAAATGAATAAGACCATA
1 GAAAAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACCAGAAATGAATAAGACCATA
* **
76177127 GTTGAAAAACACTATTACACTATACC
66 GTTGAAAGACACTATGGCACTATACC
* * * * *
76177153 -AGAAAACGAAAAAGACCATAGTTGAAA-AGCACTATGGCATTATACTAGAAATGAATAAGACTA
1 GA-AAAATGAATAAGACCATAGTTGAAAGA-CACTATGGCACTATACCAGAAATGAATAAGACCA
76177216 TAGTTGAAAGACACTATGGCACTATACC
64 TAGTTGAAAGACACTATGGCACTATACC
* * * *
76177244 GAAAAATGAATAAGACAAGAGTTGAAAGACACTATGGCACTATGCCGGAAATGAATAAGACCATA
1 GAAAAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACCAGAAATGAATAAGACCATA
**
76177309 GTTGAAAGACACTATGGCA-TCATGTC
66 GTTGAAAGACACTATGGCACT-ATACC
* * *
76177335 G-GAAATAAATAAGACCAT-GTTTGAAAGACGCTATGG
1 GAAAAATGAATAAGACCATAG-TTGAAAGACACTATGG
76177371 AATCCTTGAA
Statistics
Matches: 185, Mismatches: 27, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
89 1 0.01
90 31 0.17
91 151 0.82
92 2 0.01
ACGTcount: A:0.45, C:0.16, G:0.18, T:0.21
Consensus pattern (91 bp):
GAAAAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACCAGAAATGAATAAGACCATA
GTTGAAAGACACTATGGCACTATACC
Found at i:76177340 original size:136 final size:136
Alignment explanation
Indices: 76177065--76177370 Score: 377
Period size: 136 Copynumber: 2.2 Consensus size: 136
76177055 TTGGCTTGAA
* * * * *
76177065 AAATGAATAAAACCATAGTTGAAAGACACTATGGCACCATATCAGAAATGAATAAGACCATAGTT
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCACCATACCAAAAATGAATAAGACAAGAGTT
* *
76177130 GAAAAACACTATTACACTATACCAGAAAACGAAAAAGACCATAGTTGAAAAGCACTATGGCATTA
66 GAAAAACACTATGACACTATACCAGAAAACGAAAAAGACCATAGTTGAAAAGCACTATGGCATCA
76177195 TACTAG
131 TACTAG
* *
76177201 AAATGAATAAGACTATAGTTGAAAGACACTATGGCACTATACCGAAAAATGAATAAGACAAGAGT
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCACCATACC-AAAAATGAATAAGACAAGAGT
* * * * * *
76177266 TGAAAGACACTATGGCACTATGCC-GGAAATGAATAAGACCATAGTTG-AAAGACACTATGGCAT
65 TGAAAAACACTATGACACTATACCAGAAAACGAAAAAGACCATAGTTGAAAAG-CACTATGGCAT
* *
76177329 CAT-GTCGG
129 CATACT-AG
* *
76177337 AAATAAATAAGACCAT-GTTTGAAAGACGCTATGG
1 AAATGAATAAGACCATAG-TTGAAAGACACTATGG
76177371 AATCCTTGAA
Statistics
Matches: 146, Mismatches: 20, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
135 6 0.04
136 102 0.70
137 38 0.26
ACGTcount: A:0.45, C:0.16, G:0.18, T:0.21
Consensus pattern (136 bp):
AAATGAATAAGACCATAGTTGAAAGACACTATGGCACCATACCAAAAATGAATAAGACAAGAGTT
GAAAAACACTATGACACTATACCAGAAAACGAAAAAGACCATAGTTGAAAAGCACTATGGCATCA
TACTAG
Found at i:76177576 original size:13 final size:13
Alignment explanation
Indices: 76177560--76177593 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
76177550 GAAATGATTA
76177560 TACGAAATAGTTG
1 TACGAAATAGTTG
*
76177573 TACGAAATGGTTG
1 TACGAAATAGTTG
*
76177586 TACAAAAT
1 TACGAAAT
76177594 GATTAAATGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (13 bp):
TACGAAATAGTTG
Found at i:76178448 original size:24 final size:24
Alignment explanation
Indices: 76178421--76178469 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
76178411 CAAATGTAAA
*
76178421 TAACCATGTTGCGCATGTTTAACT
1 TAACCATGTTGCACATGTTTAACT
76178445 TAACCATGTTGCACATGTTTAACT
1 TAACCATGTTGCACATGTTTAACT
76178469 T
1 T
76178470 TATAAAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.39
Consensus pattern (24 bp):
TAACCATGTTGCACATGTTTAACT
Found at i:76182950 original size:43 final size:43
Alignment explanation
Indices: 76182813--76182980 Score: 144
Period size: 43 Copynumber: 3.9 Consensus size: 43
76182803 ACATAAGCTC
* * * * *
76182813 ATACAAAGCC-ATATCCCAGATATGGTCTTACATGTTATCAC-
1 ATACAATGCCAATATCCCAGACATGGTCTTACACGTAATCTCA
* * * ** *
76182854 ATATCGATGCCACTATCCCAGACAGGGTCTTACACAAAAT-TGA
1 ATA-CAATGCCAATATCCCAGACATGGTCTTACACGTAATCTCA
* * *
76182897 TTAACGATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCA
1 AT-ACAATGCCAATATCCCAGACATGGTCTTACACGTAATCTCA
* * *
76182941 ATACAATGCCAATGTCCCAAACATGGTCTTACATGTAATC
1 ATACAATGCCAATATCCCAGACATGGTCTTACACGTAATC
76182981 ACATCTCGAT
Statistics
Matches: 100, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
41 3 0.03
42 5 0.05
43 88 0.88
44 4 0.04
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (43 bp):
ATACAATGCCAATATCCCAGACATGGTCTTACACGTAATCTCA
Found at i:76191140 original size:18 final size:18
Alignment explanation
Indices: 76191119--76191167 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
76191109 TGCACATTAA
76191119 AAAATATAAAATAT-ATAT
1 AAAATATAAAA-ATCATAT
*
76191137 AAAATCTAAAAATCATAT
1 AAAATATAAAAATCATAT
*
76191155 AAATTATAAAAAT
1 AAAATATAAAAAT
76191168 ACAATAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 2 0.07
18 25 0.93
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (18 bp):
AAAATATAAAAATCATAT
Found at i:76191332 original size:20 final size:19
Alignment explanation
Indices: 76191289--76191325 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
76191279 TAGTATAAAA
76191289 ATTTTAATATTATGTTTAC
1 ATTTTAATATTATGTTTAC
76191308 ATTTTCAATATTAT-TTTA
1 ATTTT-AATATTATGTTTA
76191326 TTATTTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.59
Consensus pattern (19 bp):
ATTTTAATATTATGTTTAC
Found at i:76191381 original size:19 final size:19
Alignment explanation
Indices: 76191359--76191395 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
76191349 TTAAAAAAAA
76191359 TTATAGTTTTT-ATAATTTT
1 TTATA-TTTTTAATAATTTT
76191378 TTATATTTTTAATAATTT
1 TTATATTTTTAATAATTT
76191396 AATTTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (19 bp):
TTATATTTTTAATAATTTT
Found at i:76193692 original size:3 final size:3
Alignment explanation
Indices: 76193656--76193700 Score: 54
Period size: 3 Copynumber: 15.0 Consensus size: 3
76193646 TAGAGAGGGG
* * * *
76193656 TTA TTG TTA TTA TTG TTA TTG TTA TTA CTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
76193701 AAGTTTTCTT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:76196543 original size:24 final size:24
Alignment explanation
Indices: 76196515--76196562 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
76196505 TTAGTCCTTT
*
76196515 ATTTTTT-TTT-TGTTTTTCATAAA
1 ATTTTTTATTTAT-TTTTTCAGAAA
76196538 ATTTTTTATTTATTTTTTCAGAAA
1 ATTTTTTATTTATTTTTTCAGAAA
76196562 A
1 A
76196563 AATGAGTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 7 0.32
24 14 0.64
25 1 0.05
ACGTcount: A:0.27, C:0.04, G:0.04, T:0.65
Consensus pattern (24 bp):
ATTTTTTATTTATTTTTTCAGAAA
Found at i:76199253 original size:108 final size:108
Alignment explanation
Indices: 76199064--76199263 Score: 364
Period size: 108 Copynumber: 1.9 Consensus size: 108
76199054 GTAAACGGAG
* *
76199064 ATATTTTGCCATTATTAGTTTTCTTCATTGTTGTTTGTCTGAGGGAAAAGGACAATACTACTCTT
1 ATATTTTGCCATTATTAGTTTTCTTCATTGTTGATTGTCCGAGGGAAAAGGACAATACTACTCTT
76199129 CATGGCAGTGTCATTGTTGGTGTTTTGCCATTATTTTGCTTTT
66 CATGGCAGTGTCATTGTTGGTGTTTTGCCATTATTTTGCTTTT
* *
76199172 ATATTTTGCCATTATTAGTTTTCTTCATTGTTGATTGTCCGAGGGATAAGGACAGTACTACTCTT
1 ATATTTTGCCATTATTAGTTTTCTTCATTGTTGATTGTCCGAGGGAAAAGGACAATACTACTCTT
76199237 CATGGCAGTGTCATTGTTGGTGTTTTG
66 CATGGCAGTGTCATTGTTGGTGTTTTG
76199264 GAAAGTGACA
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
108 88 1.00
ACGTcount: A:0.20, C:0.14, G:0.21, T:0.46
Consensus pattern (108 bp):
ATATTTTGCCATTATTAGTTTTCTTCATTGTTGATTGTCCGAGGGAAAAGGACAATACTACTCTT
CATGGCAGTGTCATTGTTGGTGTTTTGCCATTATTTTGCTTTT
Found at i:76200855 original size:23 final size:24
Alignment explanation
Indices: 76200809--76200855 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
76200799 GGTTGATAAT
* *
76200809 TAAATTTAATTAAAAAGTAAAAAC
1 TAAATTTAATAAAAAAATAAAAAC
*
76200833 TAAA-TTAATAAAAAAATATAAAC
1 TAAATTTAATAAAAAAATAAAAAC
76200856 GTTAAAGTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.28
Consensus pattern (24 bp):
TAAATTTAATAAAAAAATAAAAAC
Found at i:76209824 original size:27 final size:27
Alignment explanation
Indices: 76209794--76209860 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
76209784 TTACTTAGTA
* * *
76209794 AAAATATTTTTAATTAAATTTAATTATA
1 AAAATATTTTTAATAAAAATTAA-TATT
*
76209822 AAAATA-TATTAATAAAAATTAATATT
1 AAAATATTTTTAATAAAAATTAATATT
76209848 AAAATATTTTTAA
1 AAAATATTTTTAA
76209861 CAATAATTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
26 9 0.27
27 18 0.55
28 6 0.18
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATTTTTAATAAAAATTAATATT
Found at i:76210439 original size:22 final size:22
Alignment explanation
Indices: 76210393--76210439 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
76210383 AATAACAACA
* *
76210393 AAATAGTAGCAATACAATGACG
1 AAATAGTAGCAAAACAATAACG
* *
76210415 AAATAGTAGCAAAACAGTAATG
1 AAATAGTAGCAAAACAATAACG
76210437 AAA
1 AAA
76210440 AGTTTATTCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.55, C:0.11, G:0.17, T:0.17
Consensus pattern (22 bp):
AAATAGTAGCAAAACAATAACG
Found at i:76214485 original size:31 final size:29
Alignment explanation
Indices: 76214450--76214507 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 29
76214440 AATAGTATTT
76214450 TATT-AATTTAATATTAAAGTGATTATCTTAA
1 TATTAAATTTAAT-TTAAAGT--TTATCTTAA
76214481 TATTAAATTTAATTTAAAGTTTATCTT
1 TATTAAATTTAATTTAAAGTTTATCTT
76214508 GTAGATAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 7 0.27
31 11 0.42
32 8 0.31
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.52
Consensus pattern (29 bp):
TATTAAATTTAATTTAAAGTTTATCTTAA
Found at i:76214593 original size:59 final size:62
Alignment explanation
Indices: 76214477--76214594 Score: 154
Period size: 62 Copynumber: 2.0 Consensus size: 62
76214467 AGTGATTATC
* * * **
76214477 TTAATATTAAATTTAATTTAAAGTTTATCTTGTAGATAAATATTCTATTATTTTAATAAGAA
1 TTAATATTAAATCTAATCTAAAGTTTATCTTGTAGATAAATATTATATTAACTTAATAAGAA
76214539 TTAATATTAAATCTAATCTAATA-TTTATC-T-T-GATAAATATTATATTAACTTAATAA
1 TTAATATTAAATCTAATCTAA-AGTTTATCTTGTAGATAAATATTATATTAACTTAATAA
76214595 AAAAATGATT
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
59 22 0.44
60 1 0.02
61 1 0.02
62 25 0.50
63 1 0.02
ACGTcount: A:0.43, C:0.05, G:0.04, T:0.47
Consensus pattern (62 bp):
TTAATATTAAATCTAATCTAAAGTTTATCTTGTAGATAAATATTATATTAACTTAATAAGAA
Found at i:76218068 original size:24 final size:24
Alignment explanation
Indices: 76218041--76218088 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
76218031 GTTAATATGA
*
76218041 ATTATGGTATTTAGATTAAGACAT
1 ATTATGGTATTTACATTAAGACAT
76218065 ATTATGGTATTTACATTAAGACAT
1 ATTATGGTATTTACATTAAGACAT
76218089 GTGCACTTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.38, C:0.06, G:0.15, T:0.42
Consensus pattern (24 bp):
ATTATGGTATTTACATTAAGACAT
Found at i:76224115 original size:12 final size:12
Alignment explanation
Indices: 76224093--76224124 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
76224083 GTTGATAAAG
76224093 AAAATTAAATAAT
1 AAAA-TAAATAAT
76224106 AAAATAAATAAT
1 AAAATAAATAAT
76224118 AAAATAA
1 AAAATAA
76224125 TAACAGAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 15 0.79
13 4 0.21
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (12 bp):
AAAATAAATAAT
Found at i:76224137 original size:20 final size:20
Alignment explanation
Indices: 76224099--76224138 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
76224089 AAAGAAAATT
*
76224099 AAATAATAAAATAAATAATA
1 AAATAATAAAAGAAATAATA
* *
76224119 AAATAATAACAGAATTAATA
1 AAATAATAAAAGAAATAATA
76224139 TTGCAAAACA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.25
Consensus pattern (20 bp):
AAATAATAAAAGAAATAATA
Found at i:76229172 original size:23 final size:23
Alignment explanation
Indices: 76229137--76229271 Score: 134
Period size: 23 Copynumber: 5.7 Consensus size: 23
76229127 AACTCATCAT
76229137 AGCTC-ATAAGAGCTTACTGTTTC
1 AGCTCAAT-AGAGCTTACTGTTTC
* * * *
76229160 AGCTCATTGGAGCTTACCGATTC
1 AGCTCAATAGAGCTTACTGTTTC
76229183 AGCTCGAA-AGAGCTTACTG-TTC
1 AGCTC-AATAGAGCTTACTGTTTC
76229205 AGCTCAATAGAGCTTACCAT-TTTC
1 AGCTCAATAGAGCTTA-C-TGTTTC
76229229 AGCTCAATAGAGCTTACTGTTTATC
1 AGCTCAATAGAGCTTACTG-TT-TC
*
76229254 AGCTCAGTAAGAGCTTAC
1 AGCTCAAT-AGAGCTTAC
76229272 CGACATGTCT
Statistics
Matches: 94, Mismatches: 8, Indels: 17
0.79 0.07 0.14
Matches are distributed among these distances:
21 2 0.02
22 17 0.18
23 33 0.35
24 24 0.26
25 9 0.10
26 9 0.10
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (23 bp):
AGCTCAATAGAGCTTACTGTTTC
Found at i:76229230 original size:46 final size:45
Alignment explanation
Indices: 76229137--76229274 Score: 163
Period size: 46 Copynumber: 2.9 Consensus size: 45
76229127 AACTCATCAT
* *
76229137 AGCTCATAAGAGCTTACTGTTTCAGCTCATTGGAGCTTACCGATTC
1 AGCTCA-AAGAGCTTACTGTTTCAGCTCAATAGAGCTTACCGATTC
76229183 AGCTCGAAAGAGCTTACTG-TTCAGCTCAATAGAGCTTACC-ATTTTC
1 AGCTC-AAAGAGCTTACTGTTTCAGCTCAATAGAGCTTACCGA--TTC
*
76229229 AGCTCAATAGAGCTTACTGTTTATCAGCTCAGTAAGAGCTTACCGA
1 AGCTCAA-AGAGCTTACTG-TT-TCAGCTCAAT-AGAGCTTACCGA
76229275 CATGTCTTGA
Statistics
Matches: 80, Mismatches: 3, Indels: 13
0.83 0.03 0.14
Matches are distributed among these distances:
44 1 0.01
45 21 0.26
46 36 0.45
47 1 0.01
48 1 0.01
49 9 0.11
50 10 0.12
51 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (45 bp):
AGCTCAAAGAGCTTACTGTTTCAGCTCAATAGAGCTTACCGATTC
Done.