Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 236 of 290
Found at i:76882766 original size:12 final size:12
Alignment explanation
Indices: 76882725--76882768 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
76882715 TAAACAAATT
*
76882725 AGAAGGAAAAGAA
1 AGAAAGAAAA-AA
*
76882738 AGAAAGAAAAAG
1 AGAAAGAAAAAA
*
76882750 CGAAAGAAAAAA
1 AGAAAGAAAAAA
76882762 AGAAAGA
1 AGAAAGA
76882769 GAACCCACAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
12 17 0.65
13 9 0.35
ACGTcount: A:0.73, C:0.02, G:0.25, T:0.00
Consensus pattern (12 bp):
AGAAAGAAAAAA
Found at i:76884568 original size:19 final size:21
Alignment explanation
Indices: 76884544--76884586 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
76884534 GTACCTAGGA
76884544 TGATTGT-TTTGA-CATGTTT
1 TGATTGTATTTGATCATGTTT
*
76884563 TGATTGTATTTGATCGTGTTT
1 TGATTGTATTTGATCATGTTT
76884584 TGA
1 TGA
76884587 ATTGGTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.33
20 5 0.24
21 9 0.43
ACGTcount: A:0.16, C:0.05, G:0.23, T:0.56
Consensus pattern (21 bp):
TGATTGTATTTGATCATGTTT
Found at i:76895796 original size:19 final size:19
Alignment explanation
Indices: 76895772--76895811 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
76895762 TCCATTCCTA
76895772 ATTAAGATAGTAAAAAATG
1 ATTAAGATAGTAAAAAATG
76895791 ATTAAGATAGTAAAAAATG
1 ATTAAGATAGTAAAAAATG
76895810 AT
1 AT
76895812 GTGCTAGCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.15, T:0.28
Consensus pattern (19 bp):
ATTAAGATAGTAAAAAATG
Found at i:76897277 original size:22 final size:19
Alignment explanation
Indices: 76897252--76897296 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 19
76897242 CCTAAGTTAT
76897252 TTTTGAGTAAATATTATATTAA
1 TTTTGAGT--ATATTAT-TTAA
*
76897274 TTTTGAGTTTATTATTTAA
1 TTTTGAGTATATTATTTAA
76897293 TTTT
1 TTTT
76897297 TGATTGGGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 8 0.36
20 6 0.27
22 8 0.36
ACGTcount: A:0.31, C:0.00, G:0.09, T:0.60
Consensus pattern (19 bp):
TTTTGAGTATATTATTTAA
Found at i:76900264 original size:105 final size:101
Alignment explanation
Indices: 76900137--76900332 Score: 259
Period size: 105 Copynumber: 1.9 Consensus size: 101
76900127 GAATCTCATA
* * *
76900137 GTGCCATAGCCCAGTTATGGTCTTTCCA-TTAGGATGCCATAGCCCAGCTATGGTCTTACACACA
1 GTGCCATAACCCAGTTATGGTCTTTCCACTGA-AATGCCATAGCCCAGCTATGGTCTT----ACA
76900201 TATATATACAGCCATGGTCCAACCATGGTCTAATGTTCACG
61 TATATATACAGCCATGGTCCAACCATGGTCTAATGTTCACG
* * * *
76900242 GTGCCATAACCTAGTTATGGTCTTTTCACTGAAATGCTATAGCCCAGCTATGGTCTTACATTTAT
1 GTGCCATAACCCAGTTATGGTCTTTCCACTGAAATGCCATAGCCCAGCTATGGTCTTACATATAT
**
76900307 ATATTGCCATGGTCCAACCATGGTCT
66 ATACAGCCATGGTCCAACCATGGTCT
76900333 TATCAGTCAA
Statistics
Matches: 81, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
101 31 0.38
105 48 0.59
106 2 0.02
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (101 bp):
GTGCCATAACCCAGTTATGGTCTTTCCACTGAAATGCCATAGCCCAGCTATGGTCTTACATATAT
ATACAGCCATGGTCCAACCATGGTCTAATGTTCACG
Found at i:76911925 original size:105 final size:105
Alignment explanation
Indices: 76911743--76911940 Score: 288
Period size: 105 Copynumber: 1.9 Consensus size: 105
76911733 AGGGGGAAGG
** * * * *
76911743 ATAGGATATTTATCTTGATTTTTGTTGTTGTTACTGTTGTTTATTTTGACCTAGTTGTTTTGTTT
1 ATAGGATATTTATCTTGATTGATGTTGTTATTACTGCTGTTTATTCTGACCTAGTTGTTTTGTTC
* *
76911808 ACATGCATCATTTATTTTTGTTATGCTTCACACCATACCT
66 ACATGCATCATTTATTTTGGCTATGCTTCACACCATACCT
** * *
76911848 ATAGGATATTTATCTTGATTGATGTTGTTATTTTTGCTGTTTATTCTGACTTGGTTGTTTTGTTC
1 ATAGGATATTTATCTTGATTGATGTTGTTATTACTGCTGTTTATTCTGACCTAGTTGTTTTGTTC
76911913 ACATGCATCATTTATTTTGGCTATGCTT
66 ACATGCATCATTTATTTTGGCTATGCTT
76911941 TGCATCATGT
Statistics
Matches: 81, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
105 81 1.00
ACGTcount: A:0.18, C:0.12, G:0.16, T:0.54
Consensus pattern (105 bp):
ATAGGATATTTATCTTGATTGATGTTGTTATTACTGCTGTTTATTCTGACCTAGTTGTTTTGTTC
ACATGCATCATTTATTTTGGCTATGCTTCACACCATACCT
Found at i:76913078 original size:22 final size:22
Alignment explanation
Indices: 76913053--76913098 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
76913043 GATTAAAGAC
76913053 TTAATAGAATTAAATATTTATA
1 TTAATAGAATTAAATATTTATA
76913075 TTAATAGAATTAAATATTTATA
1 TTAATAGAATTAAATATTTATA
76913097 TT
1 TT
76913099 TTAATATACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (22 bp):
TTAATAGAATTAAATATTTATA
Found at i:76915112 original size:16 final size:16
Alignment explanation
Indices: 76915101--76915135 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
76915091 GGAAAAGAAG
76915101 GAAGAAGAAAAAAAAA
1 GAAGAAGAAAAAAAAA
* *
76915117 TAAGAAGAAAAGAAAA
1 GAAGAAGAAAAAAAAA
76915133 GAA
1 GAA
76915136 AAAACTTAAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.03
Consensus pattern (16 bp):
GAAGAAGAAAAAAAAA
Found at i:76916641 original size:21 final size:21
Alignment explanation
Indices: 76916596--76916645 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
76916586 TCATAAAAAC
** *
76916596 TTAAAATTTTTAAAAAATATA
1 TTAAAATTTCAAAAAAATAAA
76916617 -TAAAATTTCAAAAAAATAAA
1 TTAAAATTTCAAAAAAATAAA
76916637 TTAAAATTT
1 TTAAAATTT
76916646 GAGATTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 17 0.68
21 8 0.32
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (21 bp):
TTAAAATTTCAAAAAAATAAA
Found at i:76916819 original size:55 final size:56
Alignment explanation
Indices: 76916758--76916876 Score: 154
Period size: 56 Copynumber: 2.1 Consensus size: 56
76916748 CCTACTCAAC
* *
76916758 TAATTATTAAT-AATTATTTTTGTCACC-TA-TTATGAAACGATATAAAATAATTACT
1 TAATTATTAATAAATT-TTTTTGTC-CCTTACTTATGAAAAGATATAAAATAATCACT
* *
76916813 TAATTATTAATAAATTTTTTTGTCCCTTACTTATGAAAAGTTATAAAATAGTCACT
1 TAATTATTAATAAATTTTTTTGTCCCTTACTTATGAAAAGATATAAAATAATCACT
*
76916869 CAATTATT
1 TAATTATT
76916877 CAATTTGTCT
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
54 2 0.04
55 21 0.38
56 33 0.59
ACGTcount: A:0.39, C:0.10, G:0.06, T:0.45
Consensus pattern (56 bp):
TAATTATTAATAAATTTTTTTGTCCCTTACTTATGAAAAGATATAAAATAATCACT
Found at i:76917601 original size:18 final size:16
Alignment explanation
Indices: 76917580--76917613 Score: 50
Period size: 18 Copynumber: 2.0 Consensus size: 16
76917570 AATTTATAAT
76917580 TTTAAAAAGATTAAAAAA
1 TTTAAAAA-A-TAAAAAA
76917598 TTTAAAAAATAAAAAA
1 TTTAAAAAATAAAAAA
76917614 GTGTGAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 1 0.06
18 8 0.50
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (16 bp):
TTTAAAAAATAAAAAA
Found at i:76917612 original size:26 final size:26
Alignment explanation
Indices: 76917564--76917614 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
76917554 ATGTTATAGG
* ** *
76917564 TTAAAAAATTTATAATTTTAAAAAGA
1 TTAAAAAATTTAAAAAATAAAAAAGA
76917590 TTAAAAAATTTAAAAAATAAAAAAG
1 TTAAAAAATTTAAAAAATAAAAAAG
76917615 TGTGAAAAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (26 bp):
TTAAAAAATTTAAAAAATAAAAAAGA
Found at i:76920210 original size:34 final size:35
Alignment explanation
Indices: 76920145--76920211 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
76920135 TCAAATAGAT
* * * *
76920145 CAATACGGTAGCATTTAATTATGCTTTTAACAGAA
1 CAATACGGTAACAATCAATTATGCTTATAACAGAA
76920180 CAATACGGTAACAATCAA-TATGCTTATAACAG
1 CAATACGGTAACAATCAATTATGCTTATAACAG
76920212 TTTAATACAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 13 0.46
35 15 0.54
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.30
Consensus pattern (35 bp):
CAATACGGTAACAATCAATTATGCTTATAACAGAA
Found at i:76921552 original size:3 final size:3
Alignment explanation
Indices: 76921544--76921568 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
76921534 TCTTTTTACC
76921544 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
76921569 ACATGAAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:76922489 original size:20 final size:19
Alignment explanation
Indices: 76922438--76922490 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
76922428 ATTGAAATTT
*
76922438 TTTTATAATAAATTATATA
1 TTTTATAATAAATTAAATA
76922457 TTTTATAATTAAATTAAAAGTA
1 TTTTATAA-TAAATT-AAA-TA
76922479 TTTTAT-ATAAAT
1 TTTTATAATAAAT
76922491 ACTAATTACA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 8 0.27
20 11 0.37
21 3 0.10
22 8 0.27
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (19 bp):
TTTTATAATAAATTAAATA
Found at i:76922752 original size:3 final size:3
Alignment explanation
Indices: 76922744--76922798 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
76922734 CATAACAAAT
76922744 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
76922792 TAA TAA T
1 TAA TAA T
76922799 TATTATTATA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:76922806 original size:6 final size:6
Alignment explanation
Indices: 76922741--76922823 Score: 69
Period size: 6 Copynumber: 13.8 Consensus size: 6
76922731 GTTCATAACA
* * * * * * *
76922741 AATTAAT AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT
1 AATT-AT AATTAT AATTAT AATTAT AATTAT AATTAT AATTAT AATTAT
* *
76922790 AATAAT AATTAT TATTAT AATTAT AATT-T AATTA
1 AATTAT AATTAT AATTAT AATTAT AATTAT AATTA
76922824 AACTTTGGAT
Statistics
Matches: 71, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
5 5 0.07
6 63 0.89
7 3 0.04
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (6 bp):
AATTAT
Found at i:76923104 original size:23 final size:24
Alignment explanation
Indices: 76923044--76923097 Score: 78
Period size: 23 Copynumber: 2.3 Consensus size: 24
76923034 TGATTTTTGC
76923044 TATTATTTGATATGTT--TAGTTAT
1 TATTATTTGATAT-TTGATAGTTAT
76923067 TATTATTTGATATTTGATAGTT-T
1 TATTATTTGATATTTGATAGTTAT
76923090 TATTATTT
1 TATTATTT
76923098 TTTATTTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
22 2 0.07
23 22 0.76
24 5 0.17
ACGTcount: A:0.26, C:0.00, G:0.11, T:0.63
Consensus pattern (24 bp):
TATTATTTGATATTTGATAGTTAT
Found at i:76925270 original size:40 final size:40
Alignment explanation
Indices: 76925182--76925327 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
76925172 ACTTGAATTT
* * * * *
76925182 TCGCACATTAAGTGCCAATACATAGCCAAAGTTGTCTCAAA
1 TCGCACACTAAGTGCC-ATACATAGCCGAAGCTATCTTAAA
* *
76925223 TCGCACACTAAGTGCCATTCATAGCCGAAGCTATCTTGAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTTAAA
* * * *
76925263 TCACACACTAAGTGCTATACATAACCGAAGCTATCTTCAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTTAAA
76925303 TCGCACACTAAGTGCCATACATAGC
1 TCGCACACTAAGTGCCATACATAGC
76925328 GAATTGTCAT
Statistics
Matches: 90, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
40 75 0.83
41 15 0.17
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.24
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTTAAA
Found at i:76934177 original size:25 final size:25
Alignment explanation
Indices: 76934148--76934195 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
76934138 TTATAATATG
* * *
76934148 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
76934173 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
76934196 GTTTATACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:76934246 original size:9 final size:9
Alignment explanation
Indices: 76934234--76934310 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
76934224 TTTGATAAAC
76934234 ATGATATGT
1 ATGATATGT
*
76934243 ATGATATGCAC
1 ATGATATG--T
76934254 ATGATATGT
1 ATGATATGT
*
76934263 ATGATATGCAC
1 ATGATATG--T
*
76934274 ATGACATGT
1 ATGATATGT
*
76934283 ATGATATGCAC
1 ATGATATG--T
76934294 ATGATATGT
1 ATGATATGT
76934303 ATGATATG
1 ATGATATG
76934311 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:76934259 original size:11 final size:11
Alignment explanation
Indices: 76934243--76934314 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
76934233 CATGATATGT
76934243 ATGATATGCAC
1 ATGATATGCAC
*
76934254 ATGATATG--T
1 ATGATATGCAC
76934263 ATGATATGCAC
1 ATGATATGCAC
* *
76934274 ATGACATG--T
1 ATGATATGCAC
76934283 ATGATATGCAC
1 ATGATATGCAC
*
76934294 ATGATATG--T
1 ATGATATGCAC
76934303 ATGATATGCAC
1 ATGATATGCAC
76934314 A
1 A
76934315 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:76934322 original size:20 final size:20
Alignment explanation
Indices: 76934232--76934314 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
76934222 ATTTTGATAA
76934232 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
76934252 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
76934272 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
76934292 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
76934312 ACA
1 ACA
76934315 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:76934448 original size:24 final size:24
Alignment explanation
Indices: 76934368--76934462 Score: 124
Period size: 23 Copynumber: 4.0 Consensus size: 24
76934358 GAGGAAGTGC
76934368 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
76934392 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
76934415 AAAAAGGGCTT-TGCCCTAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
*
76934439 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
76934463 ATGATAAAGC
Statistics
Matches: 63, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
23 29 0.46
24 18 0.29
25 16 0.25
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:76942271 original size:25 final size:25
Alignment explanation
Indices: 76942242--76942289 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
76942232 TTATAATATG
* *
76942242 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
76942267 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
76942290 GTTTATAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:76942339 original size:9 final size:9
Alignment explanation
Indices: 76942327--76942403 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
76942317 TTTGATAAAC
76942327 ATGATATGT
1 ATGATATGT
*
76942336 ATGATATGCAC
1 ATGATATG--T
76942347 ATGATATGT
1 ATGATATGT
*
76942356 ATGATATGCAC
1 ATGATATG--T
*
76942367 ATGACATGT
1 ATGATATGT
*
76942376 ATGATATGCAC
1 ATGATATG--T
76942387 ATGATATGT
1 ATGATATGT
76942396 ATGATATG
1 ATGATATG
76942404 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:76942352 original size:11 final size:11
Alignment explanation
Indices: 76942336--76942407 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
76942326 CATGATATGT
76942336 ATGATATGCAC
1 ATGATATGCAC
*
76942347 ATGATATG--T
1 ATGATATGCAC
76942356 ATGATATGCAC
1 ATGATATGCAC
* *
76942367 ATGACATG--T
1 ATGATATGCAC
76942376 ATGATATGCAC
1 ATGATATGCAC
*
76942387 ATGATATG--T
1 ATGATATGCAC
76942396 ATGATATGCAC
1 ATGATATGCAC
76942407 A
1 A
76942408 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:76942415 original size:20 final size:20
Alignment explanation
Indices: 76942325--76942407 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
76942315 ATTTTGATAA
76942325 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
76942345 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
76942365 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
76942385 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
76942405 ACA
1 ACA
76942408 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:76942489 original size:25 final size:24
Alignment explanation
Indices: 76942461--76942512 Score: 95
Period size: 24 Copynumber: 2.1 Consensus size: 24
76942451 GAGGAAGTGC
76942461 AAAAGGGCTTATGCCCCAGTTATTA
1 AAAAGGGCTT-TGCCCCAGTTATTA
76942486 AAAAGGGCTTTGCCCCAGTTATTA
1 AAAAGGGCTTTGCCCCAGTTATTA
76942510 AAA
1 AAA
76942513 GAGGCTAGGC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 17 0.63
25 10 0.37
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTATTA
Found at i:76942518 original size:24 final size:25
Alignment explanation
Indices: 76942461--76942518 Score: 86
Period size: 24 Copynumber: 2.4 Consensus size: 25
76942451 GAGGAAGTGC
76942461 AAAAG-GGCTTATGCCCCAGTTATT
1 AAAAGAGGCTTATGCCCCAGTTATT
76942485 AAAA-AGGGCTT-TGCCCCAGTTATT
1 AAAAGA-GGCTTATGCCCCAGTTATT
76942509 AAAAGAGGCT
1 AAAAGAGGCT
76942519 AGGCCTCCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
24 25 0.81
25 6 0.19
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (25 bp):
AAAAGAGGCTTATGCCCCAGTTATT
Found at i:76942758 original size:30 final size:31
Alignment explanation
Indices: 76942724--76942786 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
76942714 CGTTTACAGT
76942724 AAAGGCTTCGGCCCAGTAATATGAAAT-TGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
76942754 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
76942785 AA
1 AA
76942787 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:76943957 original size:40 final size:40
Alignment explanation
Indices: 76943857--76944045 Score: 245
Period size: 40 Copynumber: 4.7 Consensus size: 40
76943847 TTGAATTCTT
* *
76943857 GCACACTAAATGCCAATACATAGCCGAAGCTAT-TTTAATCCC
1 GCACACTAAGTGCC-ATACATAGCCGAAGCTATCTTGAAT--C
* * * *
76943899 GCACACTGAGTGCCATACATAGTCGAAGCTGTCTCGAATC
1 GCACACTAAGTGCCATACATAGCCGAAGCTATCTTGAATC
**
76943939 GCACACTAAGTGTAATACATAGCCGAAGCTATCTTGAATC
1 GCACACTAAGTGCCATACATAGCCGAAGCTATCTTGAATC
* * *
76943979 GCACACTAAGTGCCGTACACAACCGAAGCTATCTTGAATC
1 GCACACTAAGTGCCATACATAGCCGAAGCTATCTTGAATC
76944019 GCACACTAAGTGCCATACATAGCCGAA
1 GCACACTAAGTGCCATACATAGCCGAA
76944046 TTGTCGTCAA
Statistics
Matches: 126, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
40 94 0.75
41 16 0.13
42 16 0.13
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (40 bp):
GCACACTAAGTGCCATACATAGCCGAAGCTATCTTGAATC
Found at i:76948013 original size:31 final size:32
Alignment explanation
Indices: 76947975--76948034 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
76947965 GCATTAATAT
*
76947975 TTATATATTTATA-TAATTTAATTTAAATAAA
1 TTATATATTTAAATTAATTTAATTTAAATAAA
* *
76948006 TTATATATTTAAATTTATTTATTTTAAAT
1 TTATATATTTAAATTAATTTAATTTAAAT
76948035 GTAAATTGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 12 0.48
32 13 0.52
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (32 bp):
TTATATATTTAAATTAATTTAATTTAAATAAA
Found at i:76948661 original size:17 final size:17
Alignment explanation
Indices: 76948639--76948671 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
76948629 ACTATTACAA
76948639 ATATAA-ATACAATATAC
1 ATATAATATA-AATATAC
76948656 ATATAATATAAATATA
1 ATATAATATAAATATA
76948672 TATCTAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (17 bp):
ATATAATATAAATATAC
Found at i:76948670 original size:11 final size:11
Alignment explanation
Indices: 76948638--76948671 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
76948628 CACTATTACA
*
76948638 AATATAAATAC
1 AATATAAATAT
*
76948649 AATATACATAT
1 AATATAAATAT
76948660 AATATAAATAT
1 AATATAAATAT
76948671 A
1 A
76948672 TATCTAATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (11 bp):
AATATAAATAT
Found at i:76950098 original size:8 final size:8
Alignment explanation
Indices: 76950082--76950115 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
76950072 ATGTTTTGGC
76950082 AAAAA-AA
1 AAAAAGAA
76950089 AAAAAGAA
1 AAAAAGAA
76950097 AAAAAGAA
1 AAAAAGAA
*
76950105 AGAAAGAA
1 AAAAAGAA
76950113 AAA
1 AAA
76950116 GAAAATACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 5 0.21
8 19 0.79
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (8 bp):
AAAAAGAA
Found at i:76950110 original size:16 final size:14
Alignment explanation
Indices: 76950082--76950120 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 14
76950072 ATGTTTTGGC
76950082 AAAAAAAAAAAAGA
1 AAAAAAAAAAAAGA
76950096 AAAAAAGAAAGAAAGA
1 AAAAAA-AAA-AAAGA
76950112 AAAAGAAAA
1 AAAA-AAAA
76950121 TACATGATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 6 0.27
15 3 0.14
16 11 0.50
17 2 0.09
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAAGA
Found at i:76955166 original size:18 final size:19
Alignment explanation
Indices: 76955134--76955189 Score: 78
Period size: 18 Copynumber: 2.9 Consensus size: 19
76955124 CTACTGTGGA
* *
76955134 GAAAAAGAAATAAGAAAGC
1 GAAAAAAAAAAAAGAAAGC
76955153 -AAAAAAAAAAAAGAAAGC
1 GAAAAAAAAAAAAGAAAGC
76955171 GAAAAAAAAGAAAAGAAAG
1 GAAAAAAAA-AAAAGAAAG
76955190 AATAAGTAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
18 16 0.48
19 8 0.24
20 9 0.27
ACGTcount: A:0.77, C:0.04, G:0.18, T:0.02
Consensus pattern (19 bp):
GAAAAAAAAAAAAGAAAGC
Found at i:76963434 original size:56 final size:55
Alignment explanation
Indices: 76963332--76963471 Score: 158
Period size: 56 Copynumber: 2.5 Consensus size: 55
76963322 CTCATTATAG
* * * *
76963332 AAAGGATTTAGCTCGTACGGGTAATCCTGATATAAGCTCTCTAGCATATGTTACA-
1 AAAGGATTTAGCT-GGACTGGTAATCCTAATATAAGCTCTCTAGCATAAGTTACAT
* * *
76963387 ATTAGGATTTAGCTGGACTAGTAATCCTAAT-TGAGCTCTTCTGAGCATAAGTTACAT
1 A-AAGGATTTAGCTGGACTGGTAATCCTAATATAAGCTC-TCT-AGCATAAGTTACAT
76963444 AAAGGATTTAGCCTGGACTGGTAATCCT
1 AAAGGATTTAG-CTGGACTGGTAATCCT
76963472 CTAATATGAT
Statistics
Matches: 71, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
54 6 0.08
55 17 0.24
56 32 0.45
57 16 0.23
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (55 bp):
AAAGGATTTAGCTGGACTGGTAATCCTAATATAAGCTCTCTAGCATAAGTTACAT
Found at i:76965047 original size:30 final size:30
Alignment explanation
Indices: 76965007--76965068 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
76964997 ATAATTTGTG
* * *
76965007 ATAGTATGATGTTTCCTGATCTTTTTAAAT
1 ATAGTATGATGTCTCCTGATCATTTGAAAT
*
76965037 ATAGTGTGATGTCTCCTGATCATTTGAAAT
1 ATAGTATGATGTCTCCTGATCATTTGAAAT
76965067 AT
1 AT
76965069 GTTTTTCATA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.27, C:0.11, G:0.16, T:0.45
Consensus pattern (30 bp):
ATAGTATGATGTCTCCTGATCATTTGAAAT
Found at i:76968466 original size:41 final size:41
Alignment explanation
Indices: 76968421--76968514 Score: 93
Period size: 42 Copynumber: 2.3 Consensus size: 41
76968411 ATTATTTTAA
* * *
76968421 TTTTAATTTTTGAAATTT-C-AATCAAAACTTTCAATTCTGT
1 TTTTTATTTTT-AAATTTCCAAATCAAAACTTTAAATTCTAT
***
76968461 TTTTTATTTTATTTTTTTCCAAATCAAAACTTTAAATTCTATT
1 TTTTTATTTT-TAAATTTCCAAATCAAAACTTTAAATTCTA-T
76968504 TTTTTATTTTT
1 TTTTTATTTTT
76968515 TCCCAAGTAC
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
40 12 0.27
41 2 0.05
42 19 0.43
43 11 0.25
ACGTcount: A:0.29, C:0.11, G:0.02, T:0.59
Consensus pattern (41 bp):
TTTTTATTTTTAAATTTCCAAATCAAAACTTTAAATTCTAT
Found at i:76973914 original size:5 final size:5
Alignment explanation
Indices: 76973904--76973928 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
76973894 CTAATTTTTA
76973904 TTATT TTATT TTATT TTATT TTATT
1 TTATT TTATT TTATT TTATT TTATT
76973929 ATTTATTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:76975600 original size:10 final size:10
Alignment explanation
Indices: 76975585--76975634 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
76975575 TAATTTTAGG
76975585 ATTTAT-TTT
1 ATTTATCTTT
76975594 CATTTATCTTT
1 -ATTTATCTTT
*
76975605 AATTATCTTT
1 ATTTATCTTT
76975615 ATTTAT-TTGT
1 ATTTATCTT-T
*
76975625 AATTATCTTT
1 ATTTATCTTT
76975635 TAGAATTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 2 0.06
10 27 0.79
11 5 0.15
ACGTcount: A:0.24, C:0.08, G:0.02, T:0.66
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:76975618 original size:20 final size:20
Alignment explanation
Indices: 76975595--76975634 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
76975585 ATTTATTTTC
76975595 ATTTATCTT-TAATTATCTTT
1 ATTTAT-TTGTAATTATCTTT
76975615 ATTTATTTGTAATTATCTTT
1 ATTTATTTGTAATTATCTTT
76975635 TAGAATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.25, C:0.07, G:0.03, T:0.65
Consensus pattern (20 bp):
ATTTATTTGTAATTATCTTT
Found at i:76977150 original size:39 final size:39
Alignment explanation
Indices: 76977104--76977181 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
76977094 GTGTTAGTTC
76977104 AACCTAAATCGGGTAAGGAATTTATAATTTACAGTGATG
1 AACCTAAATCGGGTAAGGAATTTATAATTTACAGTGATG
*
76977143 AACCTAAATTGGGTAAGGAATTTATAATTTACAGTGATG
1 AACCTAAATCGGGTAAGGAATTTATAATTTACAGTGATG
76977182 CGTCATTAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.38, C:0.09, G:0.21, T:0.32
Consensus pattern (39 bp):
AACCTAAATCGGGTAAGGAATTTATAATTTACAGTGATG
Found at i:76991553 original size:34 final size:34
Alignment explanation
Indices: 76991500--76991588 Score: 90
Period size: 34 Copynumber: 2.6 Consensus size: 34
76991490 TACAGTGTTG
* **
76991500 ATCAGTCTGGGCCCAAGCCCA-TACCAGTAGCAAT
1 ATCAGTGTGGGCCTTAGCCCATTA-CAGTAGCAAT
* * * * *
76991534 ATTAGTGTGGGCTTTAGCCCATTACGGTAGTAGT
1 ATCAGTGTGGGCCTTAGCCCATTACAGTAGCAAT
76991568 ATCAGTGTGGGCCTTAGCCCA
1 ATCAGTGTGGGCCTTAGCCCA
76991589 ATTTAGTATA
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
34 42 0.95
35 2 0.05
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.26
Consensus pattern (34 bp):
ATCAGTGTGGGCCTTAGCCCATTACAGTAGCAAT
Found at i:77000065 original size:40 final size:40
Alignment explanation
Indices: 76999981--77000204 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
76999971 TTGAATGATG
* * * *
76999981 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
77000021 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
77000061 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
77000100 TCCGGGTTAA-TCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
77000139 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
77000180 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77000205 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
39 70 0.43
40 83 0.51
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:77000173 original size:79 final size:80
Alignment explanation
Indices: 76999981--77000204 Score: 271
Period size: 79 Copynumber: 2.8 Consensus size: 80
76999971 TTGAATGATG
* * * * * *
76999981 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGG-GTTAGATCCCGAAGGCAT
*
77000044 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
77000061 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTA-ATCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAGATCCCGAAGGCATTT
*
77000124 GTGCGAGTTACTAAA
66 GTGCGAGATACTAAA
* *
77000139 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTA-GATCCCGAAGGCAT
77000202 TTG
64 TTG
77000205 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
77 2 0.02
78 37 0.29
79 53 0.42
80 34 0.27
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAGATCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:77000226 original size:79 final size:79
Alignment explanation
Indices: 76999981--77000237 Score: 222
Period size: 79 Copynumber: 3.3 Consensus size: 79
76999971 TTGAATGATG
* * * * * * *
76999981 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGCT-A-ATCCCGAAGGCAT
** *
77000044 TTGTGCGAGAT-ACTAAT
63 TTGAACGAG-TGACTAAA
* *
77000061 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAATCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAATCCCGAAGGCATTTG
** *
77000125 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
77000139 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTA-ATCCCGAAGGCATT
*
77000203 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
77000219 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
77000238 TACGTGATTT
Statistics
Matches: 152, Mismatches: 18, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
77 3 0.02
78 35 0.23
79 69 0.45
80 45 0.30
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAATCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:77008053 original size:40 final size:40
Alignment explanation
Indices: 77007969--77008192 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
77007959 TTGAATGATG
* * * *
77007969 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
77008009 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
77008049 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
77008088 TCCGGGTTAA-TCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
77008127 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
77008168 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77008193 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
39 70 0.43
40 83 0.51
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:77008161 original size:79 final size:80
Alignment explanation
Indices: 77007969--77008192 Score: 271
Period size: 79 Copynumber: 2.8 Consensus size: 80
77007959 TTGAATGATG
* * * * * *
77007969 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGG-GTTAGATCCCGAAGGCAT
*
77008032 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
77008049 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTA-ATCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAGATCCCGAAGGCATTT
*
77008112 GTGCGAGTTACTAAA
66 GTGCGAGATACTAAA
* *
77008127 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTA-GATCCCGAAGGCAT
77008190 TTG
64 TTG
77008193 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
77 2 0.02
78 37 0.29
79 53 0.42
80 34 0.27
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAGATCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:77008214 original size:79 final size:79
Alignment explanation
Indices: 77007969--77008225 Score: 222
Period size: 79 Copynumber: 3.3 Consensus size: 79
77007959 TTGAATGATG
* * * * * * *
77007969 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGCT-A-ATCCCGAAGGCAT
** *
77008032 TTGTGCGAGAT-ACTAAT
63 TTGAACGAG-TGACTAAA
* *
77008049 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAATCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAATCCCGAAGGCATTTG
** *
77008113 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
77008127 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTA-ATCCCGAAGGCATT
*
77008191 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
77008207 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
77008226 TACGTGATTT
Statistics
Matches: 152, Mismatches: 18, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
77 3 0.02
78 35 0.23
79 69 0.45
80 45 0.30
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAATCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:77009913 original size:22 final size:21
Alignment explanation
Indices: 77009872--77009913 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
77009862 AGCTAGAATA
*
77009872 TTGATACATTAGGAAAATATT
1 TTGATACATTAGAAAAATATT
*
77009893 TTGATACCTTAAGAAAAATAT
1 TTGATACATT-AGAAAAATAT
77009914 CGATACCGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.36
Consensus pattern (21 bp):
TTGATACATTAGAAAAATATT
Found at i:77010237 original size:27 final size:27
Alignment explanation
Indices: 77010207--77010261 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
77010197 TAGTTTAATA
** *
77010207 GAAATAGAAGCCTTTGTGGTAATCTAT
1 GAAATAGAAAACTTTGTGGCAATCTAT
* *
77010234 GAAATGGAAAACTTTGTGGCGATCTAT
1 GAAATAGAAAACTTTGTGGCAATCTAT
77010261 G
1 G
77010262 GAAAGGAATG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.31
Consensus pattern (27 bp):
GAAATAGAAAACTTTGTGGCAATCTAT
Found at i:77010275 original size:27 final size:27
Alignment explanation
Indices: 77010218--77010269 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
77010208 AAATAGAAGC
*
77010218 CTTTGTGGTAATCTATGAAATGGAAAA
1 CTTTGTGGCAATCTATGAAATGGAAAA
*
77010245 CTTTGTGGCGATCTATGGAAA-GGAA
1 CTTTGTGGCAATCTAT-GAAATGGAA
77010270 TGCTTTTGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 18 0.82
28 4 0.18
ACGTcount: A:0.33, C:0.10, G:0.27, T:0.31
Consensus pattern (27 bp):
CTTTGTGGCAATCTATGAAATGGAAAA
Found at i:77012042 original size:27 final size:27
Alignment explanation
Indices: 77011975--77012069 Score: 82
Period size: 27 Copynumber: 3.5 Consensus size: 27
77011965 AACTTTGAAG
* * *
77011975 GAATAGTACACATGGAAAACTCTAAAA
1 GAATAGTACATATGGCAAACACTAAAA
* * * * *
77012002 GAACAATGCGTATGGCGAACACTAAAA
1 GAATAGTACATATGGCAAACACTAAAA
** * *
77012029 GAATAGTACATATGGCAAACTTTGAAG
1 GAATAGTACATATGGCAAACACTAAAA
77012056 GAATAGTACATATG
1 GAATAGTACATATG
77012070 ATGAACACTG
Statistics
Matches: 51, Mismatches: 17, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.45, C:0.14, G:0.20, T:0.21
Consensus pattern (27 bp):
GAATAGTACATATGGCAAACACTAAAA
Found at i:77028282 original size:49 final size:48
Alignment explanation
Indices: 77028223--77028442 Score: 222
Period size: 49 Copynumber: 4.6 Consensus size: 48
77028213 ATCTAAGTCA
77028223 ATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATACGTTGAGGCTG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATAC-TTGAGGCTG
* * *
77028272 ATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCACTTA-TCT-ATG-TCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACT-TC-CATACT-TGAGGCT-G
* * * **
77028321 ATGCCATGTCCCAGACAGGTCTTACACTGA----CACACCTCAAACTG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATACTTGAGGCTG
* *
77028365 ATGCCATGTCCCAGATAGGTCTTACACT-AGCTTGCATATCTTGAGGCTG
1 ATGCCATGTCCCAGACAGGTCTTACACTGA-CTTCCATA-CTTGAGGCTG
*
77028414 ATGCCATGTCCCAGATAGGTCTTACACTG
1 ATGCCATGTCCCAGACAGGTCTTACACTG
77028443 GCTCTCATCT
Statistics
Matches: 142, Mismatches: 15, Indels: 27
0.77 0.08 0.15
Matches are distributed among these distances:
43 4 0.03
44 29 0.20
45 1 0.01
48 4 0.03
49 98 0.69
50 3 0.02
51 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATACTTGAGGCTG
Found at i:77028417 original size:93 final size:93
Alignment explanation
Indices: 77028177--77028442 Score: 281
Period size: 93 Copynumber: 2.8 Consensus size: 93
77028167 CGATACCGAC
* * * *
77028177 GCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCTAAG-TCAATGCCATGTCCCAGACAG
1 GCCATGTCCCAGACA-GGTCTTACACTAGCTCTCATATCTAGGCT-GATGCCATGTCCCAGACAG
* * * **
77028241 GTCTTACACTGACTTCCATACGTTGAGGCTGAT
64 GTCTTACACTGA---CCACACGCTCAAACTGAT
* *
77028274 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCACTTATCTATG-TCGATGCCATGTCCCAGACA
1 GCCATGTCCCAGACAGGTCTTACACTAGCTCTCA--TATCTAGGCT-GATGCCATGTCCCAGACA
77028338 GGTCTTACACTGA-CACAC-CTCAAACTGAT
63 GGTCTTACACTGACCACACGCTCAAACTGAT
* *
77028367 GCCATGTCCCAGATAGGTCTTACACTAGCT-TGCATATCTTGAGGCTGATGCCATGTCCCAGATA
1 GCCATGTCCCAGACAGGTCTTACACTAGCTCT-CATATC-T-AGGCTGATGCCATGTCCCAGACA
77028431 GGTCTTACACTG
63 GGTCTTACACTG
77028443 GCTCTCATCT
Statistics
Matches: 149, Mismatches: 14, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
91 4 0.03
92 2 0.01
93 68 0.46
94 5 0.03
96 18 0.12
97 13 0.09
98 39 0.26
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (93 bp):
GCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATCTAGGCTGATGCCATGTCCCAGACAGGT
CTTACACTGACCACACGCTCAAACTGAT
Found at i:77028470 original size:49 final size:49
Alignment explanation
Indices: 77028223--77028490 Score: 200
Period size: 49 Copynumber: 5.6 Consensus size: 49
77028213 ATCTAAGTCA
* *
77028223 ATGCCATGTCCCAGACAGGTCTTACACTGACT-TCCATACGT-T-GAG-GCTG
1 ATGCCATGTCCCAGACAGGTCTTACACTGGCTCT-CAT-C-TATCG-GTGCCG
** *
77028272 ATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCA-CTTATCTATGTCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATC-TATCGGTGCCG
* * * * * *
77028321 ATGCCATGTCCCAGACAGGTCTTACACTGACACACCTCAAAC--T---G
1 ATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGGTGCCG
* * * * * *
77028365 ATGCCATGTCCCAGATAGGTCTTACACTAGCT-TGCATATCTTGAG-GCTG
1 ATGCCATGTCCCAGACAGGTCTTACACTGGCTCT-CATCTATCG-GTGCCG
*
77028414 ATGCCATGTCCCAGATAGGTCTTACACTGGCTCTCATCTATCGGTGCCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGGTGCCG
* * *
77028463 ATACCATGTCTCAAACAGGTCTTACACT
1 ATGCCATGTCCCAGACAGGTCTTACACT
77028491 ACCACACACA
Statistics
Matches: 173, Mismatches: 32, Indels: 28
0.74 0.14 0.12
Matches are distributed among these distances:
44 31 0.18
47 3 0.02
48 2 0.01
49 134 0.77
50 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (49 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGGTGCCG
Found at i:77028497 original size:142 final size:142
Alignment explanation
Indices: 77028223--77028490 Score: 407
Period size: 142 Copynumber: 1.9 Consensus size: 142
77028213 ATCTAAGTCA
77028223 ATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATACGTTGAGGCTGATGCCATGTCCCAGAC
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATACGTTGAGGCTGATGCCATGTCCCAGAC
* * * *
77028288 AGGTCTTACACTGGCTCTCACTTATCTATGTCGATGCCATGTCCCAGACAGGTCTTACACTGACA
66 AGGTCTTACACTGGCTCTCACTTATCGATGCCGATACCATGTCCCAAACAGGTCTTACACTGACA
77028353 CACCTCAAACTG
131 CACCTCAAACTG
* *
77028365 ATGCCATGTCCCAGATAGGTCTTACACT-AGCTTGCATATC-TTGAGGCTGATGCCATGTCCCAG
1 ATGCCATGTCCCAGACAGGTCTTACACTGA-CTTCCATA-CGTTGAGGCTGATGCCATGTCCCAG
* * *
77028428 ATAGGTCTTACACTGGCTCTCA-TCTATCGGTGCCGATACCATGTCTCAAACAGGTCTTACACT
64 ACAGGTCTTACACTGGCTCTCACT-TATCGATGCCGATACCATGTCCCAAACAGGTCTTACACT
77028491 ACCACACACA
Statistics
Matches: 114, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
141 2 0.02
142 111 0.97
143 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (142 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATACGTTGAGGCTGATGCCATGTCCCAGAC
AGGTCTTACACTGGCTCTCACTTATCGATGCCGATACCATGTCCCAAACAGGTCTTACACTGACA
CACCTCAAACTG
Found at i:77032029 original size:20 final size:20
Alignment explanation
Indices: 77032006--77032052 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
77031996 GGGTTAAGAT
*
77032006 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
77032026 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
77032046 TGAGCTG
1 TGAGCTG
77032053 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:77035004 original size:12 final size:12
Alignment explanation
Indices: 77034988--77035062 Score: 51
Period size: 12 Copynumber: 5.7 Consensus size: 12
77034978 TTTTTGCTCG
77034988 ATTTTTTTTTCA
1 ATTTTTTTTTCA
* *
77035000 CTTTTTTTTTGA
1 ATTTTTTTTTCA
77035012 ATTTTTTTTCAATCAA
1 ATTTTTTTT---TC-A
77035028 ATTTTTTTTTTTCGA
1 A--TTTTTTTTTC-A
**
77035043 ATTTTTTTTTTG
1 ATTTTTTTTTCA
77035055 ATTTTTTT
1 ATTTTTTT
77035063 GTTACTCCAA
Statistics
Matches: 50, Mismatches: 7, Indels: 12
0.72 0.10 0.17
Matches are distributed among these distances:
12 26 0.52
13 9 0.18
15 5 0.10
16 2 0.04
18 8 0.16
ACGTcount: A:0.16, C:0.07, G:0.04, T:0.73
Consensus pattern (12 bp):
ATTTTTTTTTCA
Found at i:77035019 original size:15 final size:15
Alignment explanation
Indices: 77035001--77035053 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
77034991 TTTTTTTCAC
77035001 TTTTTTTTT-GAATT
1 TTTTTTTTTCGAATT
** *
77035015 TTTTTTCAATCAAATT
1 TTTTTT-TTTCGAATT
77035031 TTTTTTTTTCGAATT
1 TTTTTTTTTCGAATT
77035046 TTTTTTTT
1 TTTTTTTT
77035054 GATTTTTTTG
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
14 6 0.19
15 15 0.48
16 10 0.32
ACGTcount: A:0.17, C:0.06, G:0.04, T:0.74
Consensus pattern (15 bp):
TTTTTTTTTCGAATT
Found at i:77036577 original size:20 final size:20
Alignment explanation
Indices: 77036554--77036600 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
77036544 GGGTTAAGAT
*
77036554 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
77036574 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
77036594 TGAGCTG
1 TGAGCTG
77036601 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:77042313 original size:27 final size:27
Alignment explanation
Indices: 77042282--77042354 Score: 112
Period size: 27 Copynumber: 2.7 Consensus size: 27
77042272 CACGCTGAAA
77042282 AAATGGAAG-CTGTTGTGGCAATATATG
1 AAATGGAAGACT-TTGTGGCAATATATG
*
77042309 AAATGGAAGACTTTGTGGCAATTTATG
1 AAATGGAAGACTTTGTGGCAATATATG
*
77042336 AAATGGAAGCCTTTGTGGC
1 AAATGGAAGACTTTGTGGC
77042355 GATCTATGGA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
27 41 0.95
28 2 0.05
ACGTcount: A:0.32, C:0.10, G:0.29, T:0.30
Consensus pattern (27 bp):
AAATGGAAGACTTTGTGGCAATATATG
Found at i:77042585 original size:27 final size:27
Alignment explanation
Indices: 77042505--77042591 Score: 95
Period size: 27 Copynumber: 3.2 Consensus size: 27
77042495 ATAAGTTTGC
* *
77042505 AAGAATAGTGCATATGGAGAACTCTAA
1 AAGAATAGTACATATGGAGAACTCTGA
* *
77042532 AAGAATA-CAGCATATGGAGAACACTGA
1 AAGAATAGTA-CATATGGAGAACTCTGA
* *
77042559 AAGAGTAGTACATATGGCGAACTCTGA
1 AAGAATAGTACATATGGAGAACTCTGA
*
77042586 AGGAAT
1 AAGAAT
77042592 GATACGTATG
Statistics
Matches: 48, Mismatches: 10, Indels: 4
0.77 0.16 0.06
Matches are distributed among these distances:
27 47 0.98
28 1 0.02
ACGTcount: A:0.44, C:0.13, G:0.24, T:0.20
Consensus pattern (27 bp):
AAGAATAGTACATATGGAGAACTCTGA
Found at i:77044835 original size:22 final size:22
Alignment explanation
Indices: 77044809--77044858 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 22
77044799 TCTTTTCCCC
77044809 TCCCCAAAATCCCCAAC-TTTTT
1 TCCCCAAAATCCCC-ACTTTTTT
*
77044831 TCCCC-AAATCCCCTCTTTTTT
1 TCCCCAAAATCCCCACTTTTTT
77044852 TCCCCAA
1 TCCCCAA
77044859 TGTTTGATGC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 1 0.04
21 18 0.72
22 6 0.24
ACGTcount: A:0.22, C:0.44, G:0.00, T:0.34
Consensus pattern (22 bp):
TCCCCAAAATCCCCACTTTTTT
Found at i:77044894 original size:25 final size:25
Alignment explanation
Indices: 77044866--77044926 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 25
77044856 CAATGTTTGA
77044866 TGCATCGCCGTCGACAATCCTCTA-C
1 TGCATCGCCGTCGACAATCCTC-AGC
* **
77044891 TGCATTGCCGTCGACGGTCCTCAGC
1 TGCATCGCCGTCGACAATCCTCAGC
77044916 TGCATCGCCGT
1 TGCATCGCCGT
77044927 GTAAGTTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 1 0.03
25 30 0.97
ACGTcount: A:0.15, C:0.38, G:0.23, T:0.25
Consensus pattern (25 bp):
TGCATCGCCGTCGACAATCCTCAGC
Found at i:77047049 original size:42 final size:42
Alignment explanation
Indices: 77047003--77047091 Score: 160
Period size: 42 Copynumber: 2.1 Consensus size: 42
77046993 ATCCTAATTG
*
77047003 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAATATAAAA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAA
77047045 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAA
*
77047087 TAAAA
1 GAAAA
77047092 AAATTCCTAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.52, C:0.13, G:0.06, T:0.29
Consensus pattern (42 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAA
Found at i:77047138 original size:19 final size:18
Alignment explanation
Indices: 77047116--77047155 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
77047106 TGAATAAAAC
77047116 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
77047135 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
77047153 TTA
1 TTA
77047156 AAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:77051051 original size:19 final size:18
Alignment explanation
Indices: 77051029--77051068 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
77051019 TGAATAAAAC
77051029 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
77051048 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
77051066 TTA
1 TTA
77051069 AAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:77056435 original size:36 final size:36
Alignment explanation
Indices: 77056395--77056468 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
77056385 AAGAAATGAG
77056395 AGGTATTACGTACTTCCAAATTCTTATAATTATTTT
1 AGGTATTACGTACTTCCAAATTCTTATAATTATTTT
77056431 AGGTATTACGTACTTCCAAATTCTTATAATTATTTT
1 AGGTATTACGTACTTCCAAATTCTTATAATTATTTT
77056467 AG
1 AG
77056469 TTTATAGTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.31, C:0.14, G:0.09, T:0.46
Consensus pattern (36 bp):
AGGTATTACGTACTTCCAAATTCTTATAATTATTTT
Found at i:77057316 original size:66 final size:65
Alignment explanation
Indices: 77057202--77057335 Score: 173
Period size: 66 Copynumber: 2.0 Consensus size: 65
77057192 TGAGCAAATT
* * * **
77057202 GCTTAACTTAAAGCGAAGGCGACATCGAGAGAAGCGGAGGCTCAAAGAAAATATGATGAACTCCA
1 GCTTAACTTAAAGCGAAGGCGACAGCGAGAGAAGCAGAGGCACAAAGAAAATATGACAAACTCCA
*
77057267 GCTTCAACTTAAAGCGAAGGC-AGCAGCGAGGGAAGCAGAGGCA-ACAAGAAAATATGACAAACT
1 GCTT-AACTTAAAGCGAAGGCGA-CAGCGAGAGAAGCAGAGGCACA-AAGAAAATATGACAAACT
77057330 CCA
63 CCA
77057333 GCT
1 GCT
77057336 ACAGGTTCAG
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
65 6 0.10
66 54 0.90
ACGTcount: A:0.40, C:0.20, G:0.26, T:0.13
Consensus pattern (65 bp):
GCTTAACTTAAAGCGAAGGCGACAGCGAGAGAAGCAGAGGCACAAAGAAAATATGACAAACTCCA
Found at i:77062042 original size:32 final size:32
Alignment explanation
Indices: 77062001--77062065 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
77061991 ATCTCCAACT
77062001 TCAAAACAAAAGATAATTTAATGGGGAATGAA
1 TCAAAACAAAAGATAATTTAATGGGGAATGAA
77062033 TCAAAACAAAAGATAATTTAATGGGGAATGAA
1 TCAAAACAAAAGATAATTTAATGGGGAATGAA
77062065 T
1 T
77062066 TGTTTAGTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.52, C:0.06, G:0.18, T:0.23
Consensus pattern (32 bp):
TCAAAACAAAAGATAATTTAATGGGGAATGAA
Found at i:77062342 original size:26 final size:27
Alignment explanation
Indices: 77062306--77062365 Score: 104
Period size: 26 Copynumber: 2.3 Consensus size: 27
77062296 AAAATATAAC
77062306 ATAATAACTATTTTTATAATTTATC-T
1 ATAATAACTATTTTTATAATTTATCGT
77062332 ATAATAACTATTTTTATAATTTATCGT
1 ATAATAACTATTTTTATAATTTATCGT
*
77062359 GTAATAA
1 ATAATAA
77062366 ATGTTGCAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 25 0.78
27 7 0.22
ACGTcount: A:0.40, C:0.07, G:0.03, T:0.50
Consensus pattern (27 bp):
ATAATAACTATTTTTATAATTTATCGT
Found at i:77076721 original size:60 final size:60
Alignment explanation
Indices: 77076653--77076767 Score: 160
Period size: 60 Copynumber: 1.9 Consensus size: 60
77076643 ATATTTTTTT
* * *
77076653 AATTTTTAGAATTAGAATTAAATTG-AAAATTATTGTAAATATTCAAGGCTAAATTTGTTA
1 AATTTTTAGAATTAGAACTAAAATGAAAAATT-TTGTAAACATTCAAGGCTAAATTTGTTA
* * *
77076713 AATTTTTAGAATTTGAACTAAAATGAAAAATTTTGTAAACATTGAGGGCTAAATT
1 AATTTTTAGAATTAGAACTAAAATGAAAAATTTTGTAAACATTCAAGGCTAAATT
77076768 CATCGATTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
60 42 0.88
61 6 0.12
ACGTcount: A:0.43, C:0.04, G:0.13, T:0.39
Consensus pattern (60 bp):
AATTTTTAGAATTAGAACTAAAATGAAAAATTTTGTAAACATTCAAGGCTAAATTTGTTA
Found at i:77077287 original size:27 final size:29
Alignment explanation
Indices: 77077234--77077308 Score: 86
Period size: 27 Copynumber: 2.7 Consensus size: 29
77077224 ATTCAGAGAA
**
77077234 ATAATATTTATAT-TTTTTTTATAAATTT-
1 ATAA-ATTTATATATTTTTAAATAAATTTC
77077262 ATAAATTTATATATTTTTAAAT-AATTTC
1 ATAAATTTATATATTTTTAAATAAATTTC
*
77077290 AT-ATTTTATATATTTTTAA
1 ATAAATTTATATATTTTTAA
77077309 TTTCAAAATA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
27 29 0.69
28 13 0.31
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (29 bp):
ATAAATTTATATATTTTTAAATAAATTTC
Found at i:77085772 original size:50 final size:49
Alignment explanation
Indices: 77085604--77085846 Score: 297
Period size: 49 Copynumber: 4.9 Consensus size: 49
77085594 TATTGTGAGG
* * *
77085604 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGA
* * * * * *
77085653 TCGCATGTGTAGTACTAAATGCAGGCTACTATGCGTACCCGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GA
* **
77085704 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GA
* *
77085754 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATAATTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGA
* * * *
77085803 TCACATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
77085847 GCTTTGGCTA
Statistics
Matches: 164, Mismatches: 28, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
49 78 0.48
50 49 0.30
51 37 0.23
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (49 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGA
Found at i:77085876 original size:150 final size:150
Alignment explanation
Indices: 77085604--77085884 Score: 395
Period size: 150 Copynumber: 1.9 Consensus size: 150
77085594 TATTGTGAGG
* * * *
77085604 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATAATTGGTCACATGTGTAGTACT
* * * * *
77085669 AAATGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACT
66 AAATGCAGGCTACTATGCGTACCAGATAACTTCGATCAAGTGTGTAGAAATAAGTGCAGGCAACT
77085734 ACGTGTATCAGATGGTTAGA
131 ACGTGTATCAGATGGTTAGA
77085754 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATAATTGGTCACATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATAATTGGTCACATGTGTAGTACT
* * * * * *
77085819 AAGTGTAGGCTACTATGCGTACCAGATAGCTTTGGCTACAAGTGTG-A-AAATATGTGCAGGCAA
66 AAATGCAGGCTACTATGCGTACCAGATAAC-TTCGAT-CAAGTGTGTAGAAATAAGTGCAGGCAA
77085882 CTA
129 CTA
77085885 AGTATCAGTT
Statistics
Matches: 114, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
150 102 0.89
151 5 0.04
152 7 0.06
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (150 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATAATTGGTCACATGTGTAGTACT
AAATGCAGGCTACTATGCGTACCAGATAACTTCGATCAAGTGTGTAGAAATAAGTGCAGGCAACT
ACGTGTATCAGATGGTTAGA
Found at i:77090314 original size:50 final size:50
Alignment explanation
Indices: 77090239--77090339 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
77090229 AGGGTATCCT
*
77090239 AAGATCACTAAGATACTTAGTGCCTATAAATACAACTCTTATTCCATGAA
1 AAGATCACTAAGATACTTAGTGCCTATAAATACAACCCTTATTCCATGAA
77090289 AAGATCACTAAGATACTTAGTGCCTATAAATACAACCCTTATTCCATGAA
1 AAGATCACTAAGATACTTAGTGCCTATAAATACAACCCTTATTCCATGAA
77090339 A
1 A
77090340 GAAATTCTCT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.29
Consensus pattern (50 bp):
AAGATCACTAAGATACTTAGTGCCTATAAATACAACCCTTATTCCATGAA
Found at i:77090789 original size:13 final size:13
Alignment explanation
Indices: 77090756--77090803 Score: 60
Period size: 13 Copynumber: 3.7 Consensus size: 13
77090746 GTTCTAATAC
*
77090756 TATGTTTTCAAGA
1 TATGTTTTAAAGA
* * *
77090769 TATATTTTTAAGC
1 TATGTTTTAAAGA
77090782 TATGTTTTAAAGA
1 TATGTTTTAAAGA
77090795 TATGTTTTA
1 TATGTTTTA
77090804 CATATACTCC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.31, C:0.04, G:0.12, T:0.52
Consensus pattern (13 bp):
TATGTTTTAAAGA
Found at i:77091865 original size:16 final size:16
Alignment explanation
Indices: 77091844--77091880 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
77091834 TAACATCATA
77091844 TGCAAGCCAATTTTAT
1 TGCAAGCCAATTTTAT
*
77091860 TGCAAGCTAATTTTAT
1 TGCAAGCCAATTTTAT
77091876 TGCAA
1 TGCAA
77091881 AGTATTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (16 bp):
TGCAAGCCAATTTTAT
Found at i:77096034 original size:47 final size:47
Alignment explanation
Indices: 77095958--77096076 Score: 148
Period size: 47 Copynumber: 2.5 Consensus size: 47
77095948 CTTCGAGACT
* * * *
77095958 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* * * *
77096005 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* *
77096052 TATCACATATATATACATTCACATC
1 TATCACATATATACACTTTCACATC
77096077 ACAATTATCC
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 60 1.00
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
Found at i:77100320 original size:56 final size:55
Alignment explanation
Indices: 77100255--77100362 Score: 180
Period size: 56 Copynumber: 1.9 Consensus size: 55
77100245 TTATAGATTG
*
77100255 CAAATTAATTATTCATGAGCACTATTCAAATTAAAAGTGATGATTTATCATCTTA
1 CAAATTAATTATTCATAAGCACTATTCAAATTAAAAGTGATGATTTATCATCTTA
* *
77100310 CAAATTTAATTATTCATAAGTATTATTCAAATTAAAAGTGATGATTTATCATC
1 CAAA-TTAATTATTCATAAGCACTATTCAAATTAAAAGTGATGATTTATCATC
77100363 CAATGGATAC
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
55 4 0.08
56 45 0.92
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.40
Consensus pattern (55 bp):
CAAATTAATTATTCATAAGCACTATTCAAATTAAAAGTGATGATTTATCATCTTA
Found at i:77109584 original size:22 final size:21
Alignment explanation
Indices: 77109525--77109611 Score: 92
Period size: 22 Copynumber: 4.2 Consensus size: 21
77109515 AATAATTAAT
* *
77109525 TAATTTTTAAAAATTTAAAAA
1 TAATTTTTATAAATTTTAAAA
77109546 TATATTTTTATAAATTTTAAAA
1 TA-ATTTTTATAAATTTTAAAA
*
77109568 TAATTTTTATAATATTTT-GAA
1 TAATTTTTATAA-ATTTTAAAA
*
77109589 T-TTTTTTA-AAATTTTAAAA
1 TAATTTTTATAAATTTTAAAA
77109608 -AATT
1 TAATT
77109612 AATTAATTAA
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
18 5 0.09
19 6 0.11
20 6 0.11
21 15 0.27
22 24 0.43
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (21 bp):
TAATTTTTATAAATTTTAAAA
Found at i:77109592 original size:18 final size:18
Alignment explanation
Indices: 77109569--77109603 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
77109559 ATTTTAAAAT
*
77109569 AATTTTTATAATATTTTG
1 AATTTTTATAAAATTTTG
*
77109587 AATTTTTTTAAAATTTT
1 AATTTTTATAAAATTTT
77109604 AAAAAATTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (18 bp):
AATTTTTATAAAATTTTG
Found at i:77115892 original size:28 final size:28
Alignment explanation
Indices: 77115829--77115926 Score: 117
Period size: 27 Copynumber: 3.5 Consensus size: 28
77115819 ATATTAAGTC
*
77115829 CGCACACTCAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
77115856 CGTACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * * *
77115884 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATA-AAATCAAACT
77115913 CGCACACTTAGTGC
1 CGCACACTTAGTGC
77115927 CGAAATCAAC
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
27 20 0.33
28 20 0.33
29 20 0.33
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:77115920 original size:29 final size:28
Alignment explanation
Indices: 77115828--77115926 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
77115818 TATATTAAGT
* *
77115828 CCGCACACTCAGTGCTATAAAATC-AAC
1 CCGCACACTTAGTGCTATACAATCAAAC
* * *
77115855 TCGTACACTTAGTGCTATATAATCAAAC
1 CCGCACACTTAGTGCTATACAATCAAAC
* * *
77115883 TCGCACACTTAGTGCTGTACAATTTAAAC
1 CCGCACACTTAGTGCTATACAA-TCAAAC
77115912 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
77115927 CGAAATCAAC
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 20 0.33
28 22 0.36
29 19 0.31
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CCGCACACTTAGTGCTATACAATCAAAC
Found at i:77127600 original size:19 final size:19
Alignment explanation
Indices: 77127569--77127606 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
77127559 TAAAAATCGG
*
77127569 TAAATAATATTTTGGAAAA
1 TAAATAATATTTTAGAAAA
77127588 TAAA-AATATTTTTAGAAAA
1 TAAATAATA-TTTTAGAAAA
77127607 ATTAATTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.55, C:0.00, G:0.08, T:0.37
Consensus pattern (19 bp):
TAAATAATATTTTAGAAAA
Found at i:77138840 original size:21 final size:21
Alignment explanation
Indices: 77138816--77138885 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
77138806 CATCATGATG
77138816 GAAATGAATAAGACCATAGTT
1 GAAATGAATAAGACCATAGTT
* * *
77138837 GAAA-GACACTATGGCAACAT-GAT
1 GAAATGA-A-TA-AG-ACCATAGTT
77138860 GAAAATGAATAAGACCATAGTT
1 G-AAATGAATAAGACCATAGTT
77138882 GAAA
1 GAAA
77138886 GACACTATGG
Statistics
Matches: 36, Mismatches: 6, Indels: 14
0.64 0.11 0.25
Matches are distributed among these distances:
20 2 0.06
21 12 0.33
22 6 0.17
23 6 0.17
24 8 0.22
25 2 0.06
ACGTcount: A:0.49, C:0.11, G:0.20, T:0.20
Consensus pattern (21 bp):
GAAATGAATAAGACCATAGTT
Found at i:77138849 original size:45 final size:45
Alignment explanation
Indices: 77138779--77138943 Score: 233
Period size: 45 Copynumber: 3.7 Consensus size: 45
77138769 AGAAAACGAG
**
77138779 TAAGACCATAGTTGAAAGATGCTATGGCATCATGATGGAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCATCATGATGGAAATGAA
* *
77138824 TAAGACCATAGTTGAAAGACACTATGGCAACATGATGAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCATCATGATGGAAATGAA
* * *
77138869 TAAGACCATAGTTGAAAGACACTATGGAATCATGTTAGG-AATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCATCATGAT-GGAAATGAA
* *
77138914 TAAGATCATAGTTGAAAGAAACTATGGCAT
1 TAAGACCATAGTTGAAAGACACTATGGCAT
77138944 TATATCAGAA
Statistics
Matches: 107, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
45 106 0.99
46 1 0.01
ACGTcount: A:0.44, C:0.12, G:0.21, T:0.24
Consensus pattern (45 bp):
TAAGACCATAGTTGAAAGACACTATGGCATCATGATGGAAATGAA
Found at i:77144063 original size:31 final size:31
Alignment explanation
Indices: 77144028--77144088 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
77144018 TCGGGACTAT
77144028 AAATCTGACACAGTAAAATTTGTTTTATTAC
1 AAATCTGACACAGTAAAATTTGTTTTATTAC
*
77144059 AAATCTGACACAGTAAAATTTTTTTTATTA
1 AAATCTGACACAGTAAAATTTGTTTTATTA
77144089 TATTTTTATG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.41
Consensus pattern (31 bp):
AAATCTGACACAGTAAAATTTGTTTTATTAC
Found at i:77149173 original size:19 final size:20
Alignment explanation
Indices: 77149140--77149184 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
77149130 TGATTCAACG
77149140 GACAT-AAAACTCTTGACAT
1 GACATGAAAACTCTTGACAT
*
77149159 GACATGAAAAC-CTTGAGAT
1 GACATGAAAACTCTTGACAT
*
77149178 GAAATGA
1 GACATGA
77149185 TAATGACTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 18 0.78
20 5 0.22
ACGTcount: A:0.44, C:0.16, G:0.18, T:0.22
Consensus pattern (20 bp):
GACATGAAAACTCTTGACAT
Found at i:77154932 original size:6 final size:6
Alignment explanation
Indices: 77154921--77154965 Score: 54
Period size: 6 Copynumber: 7.3 Consensus size: 6
77154911 GTACTTAATT
* * *
77154921 AATAAA AATAAA GATAAA AGTGAA AATAAA AATAAAA AATAAA AA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AAT-AAA AATAAA AA
77154966 GTTTTTAAAC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
6 26 0.81
7 6 0.19
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.16
Consensus pattern (6 bp):
AATAAA
Found at i:77156977 original size:27 final size:27
Alignment explanation
Indices: 77156936--77156989 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
77156926 TGTCATGTGA
* *
77156936 AATTGAATGGAAAATTATTGTTACATG
1 AATTGAATGGAAAATTACTATTACATG
**
77156963 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGAAAATTACTATTACATG
77156990 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGAAAATTACTATTACATG
Found at i:77157315 original size:49 final size:49
Alignment explanation
Indices: 77157243--77157419 Score: 237
Period size: 49 Copynumber: 3.6 Consensus size: 49
77157233 TGAGGTCACG
* *
77157243 TGTGTAGTACTAAGTGCATGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCA
** * * *
77157292 TGTGTAGTACTAAGTGCAGGCTACTATACGTACCCGATAACTTCGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-TT-GGTCGCA
* *
77157343 TGTGTAGTACTAAGTGCAAGCTACTATGTGTACCGGATAATTGGTCGCT
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCA
* *
77157392 TGTGCAGTACTAAGTGCAGGATACTATG
1 TGTGTAGTACTAAGTGCAGGCTACTATG
77157420 CATACCAAAT
Statistics
Matches: 109, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 64 0.59
50 4 0.04
51 41 0.38
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCA
Found at i:77157417 original size:100 final size:100
Alignment explanation
Indices: 77157238--77157418 Score: 308
Period size: 100 Copynumber: 1.8 Consensus size: 100
77157228 TATTGTGAGG
* * *
77157238 TCACGTGTGTAGTACTAAGTGCATGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCGCATGTGCAGTACT
*
77157303 AAGTGCAGGCTACTATACGTACCCGATAACTTCGA
66 AAGTGCAGGATACTATACGTACCCGATAACTTCGA
* *
77157338 TCACATGTGTAGTACTAAGTGCAAGCTACTATGTGTACCGGATAATTGGTCGCTTGTGCAGTACT
1 TCACATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCGCATGTGCAGTACT
77157403 AAGTGCAGGATACTAT
66 AAGTGCAGGATACTAT
77157419 GCATACCAAA
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 75 1.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCGCATGTGCAGTACT
AAGTGCAGGATACTATACGTACCCGATAACTTCGA
Found at i:77161943 original size:33 final size:33
Alignment explanation
Indices: 77161901--77161966 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
77161891 GTTGGCACAG
77161901 GTGAACTCACACCCGTGTGGGAGACGAAACAAT
1 GTGAACTCACACCCGTGTGGGAGACGAAACAAT
77161934 GTGAACTCACACCCGTGTGGGAGACGAAACAAT
1 GTGAACTCACACCCGTGTGGGAGACGAAACAAT
77161967 CACCTTTCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.33, C:0.24, G:0.27, T:0.15
Consensus pattern (33 bp):
GTGAACTCACACCCGTGTGGGAGACGAAACAAT
Found at i:77168240 original size:34 final size:34
Alignment explanation
Indices: 77168197--77168265 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
77168187 TACCGTAAGA
77168197 GGAATTTCTTCATTAGGTTCAGGAGTGGCAATGC
1 GGAATTTCTTCATTAGGTTCAGGAGTGGCAATGC
77168231 GGAATTTCTTCATTAGGTTCAGGAGTGGCAATGC
1 GGAATTTCTTCATTAGGTTCAGGAGTGGCAATGC
77168265 G
1 G
77168266 AGGATCTGCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.23, C:0.14, G:0.30, T:0.32
Consensus pattern (34 bp):
GGAATTTCTTCATTAGGTTCAGGAGTGGCAATGC
Found at i:77173606 original size:19 final size:19
Alignment explanation
Indices: 77173574--77173611 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
77173564 ATTTCGTACG
77173574 TTGGCCCAGTTTCTCCGTTT
1 TTGGCCCAGTTTCT-CGTTT
77173594 TTGGCCC-GTTTCTCGTTT
1 TTGGCCCAGTTTCTCGTTT
77173612 CTTTCGCTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.28
19 6 0.33
20 7 0.39
ACGTcount: A:0.03, C:0.29, G:0.21, T:0.47
Consensus pattern (19 bp):
TTGGCCCAGTTTCTCGTTT
Found at i:77184947 original size:19 final size:20
Alignment explanation
Indices: 77184913--77184957 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
77184903 TGATTCAACG
77184913 GACAT-AAAACTCTTGACAT
1 GACATGAAAACTCTTGACAT
*
77184932 GACATGAAAACT-TTGAGAT
1 GACATGAAAACTCTTGACAT
*
77184951 GAAATGA
1 GACATGA
77184958 TAATGAATTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.44, C:0.13, G:0.18, T:0.24
Consensus pattern (20 bp):
GACATGAAAACTCTTGACAT
Found at i:77186977 original size:40 final size:40
Alignment explanation
Indices: 77186893--77187180 Score: 303
Period size: 40 Copynumber: 7.5 Consensus size: 40
77186883 AAGCCAAGTA
* * * *
77186893 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATA-ATAACTCGCACAAATG
* ** * *
77186931 CCTTCGGGACATAGCCCATATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
* *
77186971 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
* * *
77187011 CCCTCGGGACTTAGTCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
* *
77187051 CCTTCGGGACTTAGCCCGGATATATTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
* *
77187091 CCCTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
* *
77187131 ----C----CTT-GCCCGGATGTAATAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
77187162 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77187181 TTATCATCCG
Statistics
Matches: 211, Mismatches: 27, Indels: 22
0.81 0.10 0.08
Matches are distributed among these distances:
31 26 0.12
32 3 0.01
35 1 0.00
36 1 0.00
38 12 0.06
39 17 0.08
40 151 0.72
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
Found at i:77187040 original size:80 final size:80
Alignment explanation
Indices: 77186893--77187134 Score: 346
Period size: 80 Copynumber: 3.0 Consensus size: 80
77186883 AAGCCAAGTA
* * * * * ** *
77186893 CCTTCGGGATTTA-ACCGGATATAGCTA-CTCGCTC-AATGCCTTCGGGACATAGCCCATATATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAGCTCGCACAAATGCCCTCGGGACTTAGCCCGGATGTA
* *
77186955 GTAACTCGCACCAATG
65 ATAACTCGCACAAATG
*
77186971 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATGCCCTCGGGACTTAGTCCGGATGTAA
1 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATGCCCTCGGGACTTAGCCCGGATGTAA
77187036 TAACTCGCACAAATG
66 TAACTCGCACAAATG
*
77187051 CCTTCGGGACTTAGCCCGGATATATTAGCTCGCACAAATGCCCTCGGGACTTAGCCCGGATGTAA
1 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATGCCCTCGGGACTTAGCCCGGATGTAA
77187116 TAACTCGCACAAATG
66 TAACTCGCACAAATG
77187131 CCTT
1 CCTT
77187135 GCCCGGATGT
Statistics
Matches: 148, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
78 14 0.09
79 16 0.11
80 118 0.80
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATGCCCTCGGGACTTAGCCCGGATGTAA
TAACTCGCACAAATG
Found at i:77187142 original size:31 final size:31
Alignment explanation
Indices: 77187104--77187165 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
77187094 TCGGGACTTA
77187104 GCCCGGATGTAATAACTCGCACAAATGCCTT
1 GCCCGGATGTAATAACTCGCACAAATGCCTT
*
77187135 GCCCGGATGTAATAACTTGCACAAATGCCTT
1 GCCCGGATGTAATAACTCGCACAAATGCCTT
77187166 CGGGACTTAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.24
Consensus pattern (31 bp):
GCCCGGATGTAATAACTCGCACAAATGCCTT
Found at i:77195141 original size:40 final size:40
Alignment explanation
Indices: 77195057--77195233 Score: 216
Period size: 40 Copynumber: 4.5 Consensus size: 40
77195047 AAGCCAATTA
* * * *
77195057 CCTTCGGGATTTAACCGA-ATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCAGATATAG-TAACTCGCACAAATG
* *
77195095 CCTTCGGGACATAGCCCAGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
* *
77195135 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
* * * *
77195175 CCCTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
77195215 CCTTCGGGACTTAGCCCAG
1 CCTTCGGGACTTAGCCCAG
77195234 TTATCATCTG
Statistics
Matches: 121, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
38 15 0.12
39 13 0.11
40 93 0.77
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
Found at i:77197665 original size:10 final size:10
Alignment explanation
Indices: 77197650--77197677 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
77197640 TCCACATCTC
77197650 TTTTCTTTTT
1 TTTTCTTTTT
77197660 TTTTCTTTTT
1 TTTTCTTTTT
77197670 TTTTCTTT
1 TTTTCTTT
77197678 CGATTTCGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (10 bp):
TTTTCTTTTT
Found at i:77197881 original size:33 final size:33
Alignment explanation
Indices: 77197844--77197906 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 33
77197834 TCCCCTCCTT
* * *
77197844 TTTTATTTTTATTATAATAATTATTTTTAGTAG
1 TTTTATTATTATTAGAATAATTATTATTAGTAG
* *
77197877 TTTTATTATTGTTAGAATTATTATTATTAG
1 TTTTATTATTATTAGAATAATTATTATTAG
77197907 ATTTAGTTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.08, T:0.62
Consensus pattern (33 bp):
TTTTATTATTATTAGAATAATTATTATTAGTAG
Found at i:77197897 original size:15 final size:15
Alignment explanation
Indices: 77197879--77197919 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
77197869 TTTAGTAGTT
*
77197879 TTATTATTGTTAGAA
1 TTATTATTATTAGAA
*
77197894 TTATTATTATTAGAT
1 TTATTATTATTAGAA
77197909 TTAGTTATTAT
1 TTA-TTATTAT
77197920 ATTATTATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 16 0.70
16 7 0.30
ACGTcount: A:0.32, C:0.00, G:0.10, T:0.59
Consensus pattern (15 bp):
TTATTATTATTAGAA
Found at i:77202345 original size:3 final size:3
Alignment explanation
Indices: 77202337--77202365 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
77202327 AAGTAAATCT
77202337 GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
77202366 CATTAGTACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:77206594 original size:13 final size:13
Alignment explanation
Indices: 77206578--77206611 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
77206568 ATTGGAGATA
*
77206578 AAAAAAGAAAATG
1 AAAAAAGAAAAAG
77206591 -AAAAAGAAAAAG
1 AAAAAAGAAAAAG
77206603 AAAAAAGAA
1 AAAAAAGAA
77206612 GTATAAGAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (13 bp):
AAAAAAGAAAAAG
Found at i:77207633 original size:50 final size:50
Alignment explanation
Indices: 77207529--77207634 Score: 126
Period size: 50 Copynumber: 2.1 Consensus size: 50
77207519 ATAAAAGAGT
* * *
77207529 TATTAATTAAAAAGATGAATTAAAAATAAAAAAATTGAAAACAATATATT
1 TATTAATTAAAAACATGAATTAAAAATAAAAAAATTGAAAACAATAAATA
* * *
77207579 TATTAATTATAAACATTAATTAAATATAAAAAAATATGAAATA-AA-AAATA
1 TATTAATTAAAAACATGAATTAAAAATAAAAAAAT-TGAAA-ACAATAAATA
77207629 TATTAA
1 TATTAA
77207635 AATACTTATA
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
50 40 0.83
51 7 0.15
52 1 0.02
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (50 bp):
TATTAATTAAAAACATGAATTAAAAATAAAAAAATTGAAAACAATAAATA
Found at i:77207637 original size:17 final size:16
Alignment explanation
Indices: 77207597--77207638 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
77207587 ATAAACATTA
77207597 ATTAAATATAAAAAAAT
1 ATTAAA-ATAAAAAAAT
*
77207614 A-TGAAATAAAAAATAT
1 ATTAAAATAAAAAA-AT
77207630 ATTAAAATA
1 ATTAAAATA
77207639 CTTATAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
15 8 0.38
16 6 0.29
17 7 0.33
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (16 bp):
ATTAAAATAAAAAAAT
Found at i:77210475 original size:16 final size:16
Alignment explanation
Indices: 77210442--77210489 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 16
77210432 TTTAATATTT
*
77210442 TAATTTTATTATAATAA
1 TAATTTTA-AATAATAA
77210459 TAAATTTTAAA-AATAA
1 T-AATTTTAAATAATAA
77210475 TAATTTTAAATAATA
1 TAATTTTAAATAATA
77210490 TTATTCACAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
15 9 0.32
16 10 0.36
17 2 0.07
18 7 0.25
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
TAATTTTAAATAATAA
Found at i:77213481 original size:31 final size:31
Alignment explanation
Indices: 77213443--77213504 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
77213433 GATCACAATG
77213443 CCAATGTATCTATTTATACACACAATCATTC
1 CCAATGTATCTATTTATACACACAATCATTC
77213474 CCAATGTATCTATTTATACACACAATCATTC
1 CCAATGTATCTATTTATACACACAATCATTC
77213505 ATTATTTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.35, C:0.26, G:0.03, T:0.35
Consensus pattern (31 bp):
CCAATGTATCTATTTATACACACAATCATTC
Found at i:77222983 original size:47 final size:47
Alignment explanation
Indices: 77222888--77223375 Score: 843
Period size: 47 Copynumber: 10.4 Consensus size: 47
77222878 CAGCCAAGAC
77222888 AGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
77222934 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
77222981 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
77223028 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
77223075 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
77223122 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
77223169 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
77223216 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
77223263 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
77223310 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
77223357 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
77223376 TCCCGAAGGG
Statistics
Matches: 422, Mismatches: 19, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
46 26 0.06
47 396 0.94
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:77223550 original size:37 final size:37
Alignment explanation
Indices: 77223494--77223572 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
77223484 CCGAGCTCTA
* *
77223494 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
77223531 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
77223568 AAGAC
1 AAGAC
77223573 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:77225490 original size:43 final size:44
Alignment explanation
Indices: 77225442--77225545 Score: 201
Period size: 44 Copynumber: 2.4 Consensus size: 44
77225432 TTGGTTTTCA
77225442 GCACTAAGTGTGCGGGCAATAAGTGTTCA-CGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACCGGTTGTGAGATTG
77225485 GCACTAAGTGTGCGGGCAATAAGTGTTCACCGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACCGGTTGTGAGATTG
77225529 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
77225546 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
43 29 0.48
44 31 0.52
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (44 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACCGGTTGTGAGATTG
Found at i:77225559 original size:29 final size:29
Alignment explanation
Indices: 77225527--77225600 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
77225517 GTTGTGAGAT
* *
77225527 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
77225556 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
77225585 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
77225601 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:77225974 original size:40 final size:41
Alignment explanation
Indices: 77225917--77226067 Score: 186
Period size: 40 Copynumber: 3.8 Consensus size: 41
77225907 TTGAATGATG
* * * *
77225917 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAAGTGA-TATA
*
77225957 TCCGGACTAAGTTCCGAAGAGCATTCGTGCT-AGTGATGTA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAAGTGATATA
77225997 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAAGTGATATA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAAGTGATATA
**
77226038 TCCGTG-CTAA-ACCCGAAGAGCATTCGTGCT
1 TCCG-GACTAAGTTCCGAAGAGCATTCGTGCT
77226068 GGTGTTATAT
Statistics
Matches: 99, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
40 68 0.69
41 23 0.23
42 8 0.08
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (41 bp):
TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAAGTGATATA
Found at i:77226098 original size:82 final size:82
Alignment explanation
Indices: 77225917--77226101 Score: 218
Period size: 80 Copynumber: 2.3 Consensus size: 82
77225907 TTGAATGATG
* **
77225917 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGTTCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAAGTGACCATATCCGGACTAAGACCCGAAGAGCA
*
77225980 TTCGTGCTAGTGATGTA
66 TTCGTGCTAGTGATATA
* * *
77225997 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAAGTGA-TATATCCGTG-CTAA-ACCCGAAGAGC
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAAGTGACCATATCCG-GACTAAGACCCGAAGAGC
* *
77226059 ATTCGTGCTGGTGTTATA
65 ATTCGTGCTAGTGATATA
*
77226077 TCTCGGGCTATGGTCCCGAAGAGCA
1 TC-CGGGCTA-AGTCCCGAAGAGCA
77226102 ATCATGCTGG
Statistics
Matches: 88, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
80 43 0.49
81 19 0.22
82 26 0.30
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAAGTGACCATATCCGGACTAAGACCCGAAGAGCA
TTCGTGCTAGTGATATA
Done.