Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 237 of 290
Found at i:77229680 original size:47 final size:47
Alignment explanation
Indices: 77229622--77230065 Score: 744
Period size: 47 Copynumber: 9.4 Consensus size: 47
77229612 CAGCCAAGAC
*
77229622 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
77229669 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
77229716 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
77229763 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
77229810 AGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
77229859 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
77229906 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
77229953 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
77230000 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
77230047 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
77230066 TCCCGAAGGG
Statistics
Matches: 377, Mismatches: 18, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 331 0.88
49 46 0.12
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:77229949 original size:190 final size:188
Alignment explanation
Indices: 77229622--77230065 Score: 753
Period size: 190 Copynumber: 2.4 Consensus size: 188
77229612 CAGCCAAGAC
77229622 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
77229687 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTG
66 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
77229752 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
131 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
77229810 AGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
*
77229875 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
64 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
77229940 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
129 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * * * *
77230000 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
77230065 G
66 G
77230066 TCCCGAAGGG
Statistics
Matches: 241, Mismatches: 13, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
188 56 0.23
190 185 0.77
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (188 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:77230240 original size:37 final size:37
Alignment explanation
Indices: 77230184--77230262 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
77230174 CCGAGCTCTA
* *
77230184 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
77230221 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
77230258 AAGAC
1 AAGAC
77230263 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:77246032 original size:17 final size:17
Alignment explanation
Indices: 77246010--77246042 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
77246000 AATTAAGTTA
*
77246010 TTTTTAAAGTATTTTAT
1 TTTTTAAAATATTTTAT
77246027 TTTTTAAAATATTTTA
1 TTTTTAAAATATTTTA
77246043 AAATATTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (17 bp):
TTTTTAAAATATTTTAT
Found at i:77249029 original size:10 final size:10
Alignment explanation
Indices: 77249014--77249063 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
77249004 TAATTTTAGG
77249014 ATTTAT-TTT
1 ATTTATCTTT
77249023 CATTTATCTTT
1 -ATTTATCTTT
*
77249034 AATTATCTTT
1 ATTTATCTTT
77249044 ATTTAT-TTGT
1 ATTTATCTT-T
77249054 ATTTATCTTT
1 ATTTATCTTT
77249064 TAGAATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:77249793 original size:17 final size:18
Alignment explanation
Indices: 77249762--77249795 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
77249752 TATTCTCTAT
*
77249762 TTTAATTTTCTCAATTTA
1 TTTAATTTTCACAATTTA
77249780 TTTAA-TTTCACAATTT
1 TTTAATTTTCACAATTT
77249796 CAATACGACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.29, C:0.12, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTAATTTTCACAATTTA
Found at i:77252788 original size:21 final size:23
Alignment explanation
Indices: 77252752--77252817 Score: 77
Period size: 21 Copynumber: 3.0 Consensus size: 23
77252742 GCAACCCAAT
*
77252752 TTTTATTTCTCTTTATTTTTTTA
1 TTTTATTTCTCTTTATTATTTTA
77252775 TTTT-TTTC-CTTTATTATTTTA
1 TTTTATTTCTCTTTATTATTTTA
* *
77252796 TTTTA-AT-TATTTATTATTTTA
1 TTTTATTTCTCTTTATTATTTTA
77252817 T
1 T
77252818 CTTAATGATT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
21 30 0.79
22 4 0.11
23 4 0.11
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (23 bp):
TTTTATTTCTCTTTATTATTTTA
Found at i:77252822 original size:21 final size:21
Alignment explanation
Indices: 77252784--77252832 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
77252774 ATTTTTTTCC
* *
77252784 TTTATTATTTTATTTTAATTA
1 TTTATTATTTTATCTTAATGA
77252805 TTTATTATTTTATCTTAATGA
1 TTTATTATTTTATCTTAATGA
77252826 TTTATTA
1 TTTATTA
77252833 CTTAATTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (21 bp):
TTTATTATTTTATCTTAATGA
Found at i:77254595 original size:20 final size:20
Alignment explanation
Indices: 77254572--77254611 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
77254562 ATTTATTTTC
77254572 ATTTATATT-TAATTATCTTT
1 ATTTAT-TTGTAATTATCTTT
*
77254592 ATTTATTTGTATTTATCTTT
1 ATTTATTTGTAATTATCTTT
77254612 TAGAATTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.68
Consensus pattern (20 bp):
ATTTATTTGTAATTATCTTT
Found at i:77255361 original size:17 final size:18
Alignment explanation
Indices: 77255330--77255363 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
77255320 TATTCTCTAT
*
77255330 TTTAATTTTCTCAATTTA
1 TTTAATTTTCACAATTTA
77255348 TTTAA-TTTCACAATTT
1 TTTAATTTTCACAATTT
77255364 CAATACGACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.29, C:0.12, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTAATTTTCACAATTTA
Found at i:77259227 original size:48 final size:48
Alignment explanation
Indices: 77259153--77259440 Score: 499
Period size: 48 Copynumber: 6.0 Consensus size: 48
77259143 CAAGATAAAT
* *
77259153 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
77259201 ATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
77259249 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
77259297 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
77259345 ATATGTATATGTGGTAAAG-C-AATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
77259391 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
77259439 AT
1 AT
77259441 GTGTGTATAT
Statistics
Matches: 227, Mismatches: 11, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
46 44 0.19
47 2 0.01
48 181 0.80
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:77259668 original size:36 final size:37
Alignment explanation
Indices: 77259581--77259682 Score: 170
Period size: 36 Copynumber: 2.8 Consensus size: 37
77259571 GGAAATATAT
77259581 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
77259618 TCCGGGTAAGACCCGATGACTACGTGTGGA-ATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
77259654 TCTGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
77259683 GGACTATTCG
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
36 32 0.52
37 30 0.48
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:77262275 original size:20 final size:20
Alignment explanation
Indices: 77262247--77262286 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
77262237 TGACATAAGA
*
77262247 ACATTATTTAATCAATTTGG
1 ACATAATTTAATCAATTTGG
77262267 ACATAATTTAATCAATTTGG
1 ACATAATTTAATCAATTTGG
77262287 TACCCATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.42
Consensus pattern (20 bp):
ACATAATTTAATCAATTTGG
Found at i:77273497 original size:17 final size:17
Alignment explanation
Indices: 77273475--77273509 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
77273465 CAGGGGAAAG
*
77273475 AAAGAAGGAAGGAAAAA
1 AAAGAAAGAAGGAAAAA
77273492 AAAGAAAGAAGGAAAAA
1 AAAGAAAGAAGGAAAAA
77273509 A
1 A
77273510 GGAAAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (17 bp):
AAAGAAAGAAGGAAAAA
Found at i:77273515 original size:21 final size:20
Alignment explanation
Indices: 77273471--77273509 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
77273461 AGAGCAGGGG
77273471 AAAGAAAGAAGGAAGGAAAAA
1 AAAGAAAGAAGGAA-GAAAAA
77273492 AAAGAAAGAAGGAA-AAAA
1 AAAGAAAGAAGGAAGAAAA
77273510 GGAAAAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
21 14 0.78
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (20 bp):
AAAGAAAGAAGGAAGAAAAA
Found at i:77275663 original size:25 final size:25
Alignment explanation
Indices: 77275635--77275685 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
77275625 CATGGCAACC
77275635 TGATATGAAATGTGTAAGACCATGG
1 TGATATGAAATGTGTAAGACCATGG
77275660 TGATATGAAATGTGTAAGACCATGG
1 TGATATGAAATGTGTAAGACCATGG
77275685 T
1 T
77275686 TGAAAGATAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.29
Consensus pattern (25 bp):
TGATATGAAATGTGTAAGACCATGG
Found at i:77275705 original size:71 final size:71
Alignment explanation
Indices: 77275589--77275731 Score: 277
Period size: 71 Copynumber: 2.0 Consensus size: 71
77275579 GTGTGCTCTC
*
77275589 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAATATGAAATGTGTAAGA
77275654 CCATGG
66 CCATGG
77275660 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAATATGAAATGTGTAAGA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAATATGAAATGTGTAAGA
77275725 CCATGG
66 CCATGG
77275731 T
1 T
77275732 TGAAAGATAC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 71 1.00
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.26
Consensus pattern (71 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAATATGAAATGTGTAAGA
CCATGG
Found at i:77275712 original size:46 final size:46
Alignment explanation
Indices: 77275660--77275972 Score: 399
Period size: 46 Copynumber: 7.0 Consensus size: 46
77275650 AAGACCATGG
**
77275660 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACC
* **
77275706 TAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACC
* ** *
77275752 TAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACC
*
77275798 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACC
* * * *
77275844 TGACATGAAAAGAATAAGACCATGATTAAAAGATACCATGGCAACC
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACC
* **
77275890 --AT-T----T-CATAAGACCATGGTTGAAAGATACCATGGCAATG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACC
* *
77275928 TGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
77275973 ATGACAGAAA
Statistics
Matches: 238, Mismatches: 21, Indels: 16
0.87 0.08 0.06
Matches are distributed among these distances:
38 29 0.12
40 1 0.00
41 1 0.00
43 1 0.00
44 1 0.00
46 205 0.86
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACC
Found at i:77275960 original size:84 final size:84
Alignment explanation
Indices: 77275811--77275972 Score: 297
Period size: 84 Copynumber: 1.9 Consensus size: 84
77275801 TATGAAATGA
77275811 ATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGATTAAAAG
1 ATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGATTAAAAG
77275876 ATACCATGGCAACCATTTC
66 ATACCATGGCAACCATTTC
* * *
77275895 ATAAGACCATGGTTGAAAGATACCATGGCAATGTGACATGAAAAGAATAAGACCATGGTTGAAAG
1 ATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGATTAAAAG
77275960 ATACCATGGCAAC
66 ATACCATGGCAAC
77275973 ATGACAGAAA
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
84 75 1.00
ACGTcount: A:0.43, C:0.17, G:0.21, T:0.20
Consensus pattern (84 bp):
ATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGATTAAAAG
ATACCATGGCAACCATTTC
Found at i:77275967 original size:130 final size:134
Alignment explanation
Indices: 77275674--77275988 Score: 424
Period size: 130 Copynumber: 2.4 Consensus size: 134
77275664 ATGAAATGTG
* * * * ** * *
77275674 TAAGACCATGGTTGAAAGATACCATGGCAACCTAATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAATAAGACCATGATTAAAAGA
** *
77275739 TACCATGGCAACCTAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATAT
66 TACCATGGCAACC-AATAT---ATGCATAAGACCATGGTTGAAAGATACCATGGCAACGTGACAT
*
77275804 GAAATGAA
127 GAAAAGAA
*
77275812 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGATTAAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAATAAGACCATGATTAAAAGA
*
77275877 TACCATGGCAACC-AT-T-T-CATAAGACCATGGTTGAAAGATACCATGGCAATGTGACATGAAA
66 TACCATGGCAACCAATATATGCATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
77275938 AGAA
131 AGAA
77275942 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAAT
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAA-GAAT
77275989 GAGTAAGACC
Statistics
Matches: 162, Mismatches: 14, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
129 5 0.03
130 83 0.51
131 1 0.01
135 1 0.01
136 2 0.01
138 70 0.43
ACGTcount: A:0.42, C:0.15, G:0.22, T:0.21
Consensus pattern (134 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAATAAGACCATGATTAAAAGA
TACCATGGCAACCAATATATGCATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
AGAA
Found at i:77275978 original size:46 final size:48
Alignment explanation
Indices: 77275895--77276025 Score: 160
Period size: 46 Copynumber: 2.7 Consensus size: 48
77275885 CAACCATTTC
**
77275895 ATAAGACCATGGTTGAAAGATACCATGGCAATGTGACATGAAAA-G-A-
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAAG
77275941 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAATG
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAA-G
* * * *
77275990 AGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 A-TAAGACCATGGTTGAAAGATACCATGGCAACATG
77276026 TCAAAGATAA
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
45 5 0.07
46 37 0.50
47 1 0.01
49 1 0.01
50 30 0.41
ACGTcount: A:0.43, C:0.15, G:0.23, T:0.20
Consensus pattern (48 bp):
ATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAAG
Found at i:77279013 original size:46 final size:45
Alignment explanation
Indices: 77278960--77279135 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 45
77278950 TATTTGGGCA
77278960 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
77279006 TCCGAACTCATTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCATTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
77279053 TCC-AAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAA-CTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
77279099 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
77279136 GTGGGTTACA
Statistics
Matches: 106, Mismatches: 14, Indels: 20
0.76 0.10 0.14
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 64 0.60
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:77279115 original size:93 final size:93
Alignment explanation
Indices: 77278956--77279127 Score: 258
Period size: 93 Copynumber: 1.8 Consensus size: 93
77278946 AGGATATTTG
*
77278956 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAG
*
77279021 TTGAGTCTGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
77279049 GGCATCC-AAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTG
1 GGCATCCGAA-CTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCATTG
77279112 AGTTGAGTCCGAGTTC
64 AGTTGAGTCCGAGTTC
77279128 ACTTATGGGT
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
92 4 0.06
93 67 0.94
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:77280983 original size:177 final size:177
Alignment explanation
Indices: 77280670--77281803 Score: 1292
Period size: 177 Copynumber: 6.5 Consensus size: 177
77280660 AATTCACAGG
* * * * *
77280670 TCTTGTCTCCCTAAGCAA-TAGTGGAACAGATCAAAGACGACAAATCTTATCTCCATGTATCGGC
1 TCTTATCTCCCTAAG-AAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCATGTATCGGC
* * * * * * * * * * *
77280734 AATGTAGCAGATTTAAGTCACCAGCCTTATCTCCCTGAAGTTGTAGTGGAA-TAGGCT--CAATA
65 AATGGAGCAGATTTAAGCCACTAGCCTTATCTCTCTGAGGTAGCA-AGAAAGCAGGTTGGCAAT-
** * * * *
77280796 TACAAGTCTTATCTCCCTGAGGTTG-TAGTGGAGCAGACTGAAAATT-ACAGA
128 T-GTAGTCTTATCTTCCTGAGGTAGCAAG-GAAGCAGACTGAAAATTGA-AGA
* *
77280847 TCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCAGCA
1 TCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCATGTATCGGCA
* * * *
77280912 ATGGAGCAGATTTAAGCCACCAGCCTTATCTTTTTGAGGTAGCAAGAGAGCAGGTTGGCAATTGT
66 ATGGAGCAGATTTAAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGAAAGCAGGTTGGCAATTGT
*
77280977 AGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAAATTGAAGA
131 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTGAAGA
* *
77281024 TCTTATCTCCCTAAGCAA-TAGTGGAGTAGATCGAAGATGGCAAATCTTATCTCCATGTATCGAC
1 TCTTATCTCCCTAAG-AAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCATGTATCGGC
* * * * *
77281088 AATAGAGAAGATTTAAGCCACTAGTCTTATCTCTCTGAGGTAGCAAAAAAGCAGGTTGGCGATTG
65 AATGGAGCAGATTTAAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGAAAGCAGGTTGGCAATTG
* *
77281153 TAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAGATTGAAGA
130 TAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTGAAGA
* * * * ** *
77281201 TCTTATCTCCCTAGGCAGTTGTAGAGCAGATC----ATGGTGAATCTTATCTCCATGTATTGGCA
1 TCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCATGTATCGGCA
* * * * *
77281262 ATGGAGCATATTTTAGCCACTAGCCTTATCTCTCTGAAGTAGCAAGAAAACAGGCTGGCAATTGT
66 ATGGAGCAGATTTAAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGAAAGCAGGTTGGCAATTGT
*
77281327 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACT-AAAGGTTGAAGA
131 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAA-ATTGAAGA
* * *
77281374 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTCCATGTATTGGCA
1 TCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCATGTATCGGCA
* * * * *
77281439 ATAGAGCATATTTAAGCCACTAGTCTTATCTCTCTAAGGTAGCAAGAAAGCAGGTTGGCGATTGT
66 ATGGAGCAGATTTAAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGAAAGCAGGTTGGCAATTGT
* * *
77281504 AGTCTTATCTTCCTGAGGTAGTAAGGAAGCAAACTGAAGATTGAAGA
131 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTGAAGA
* ** * * * *
77281551 TCTTATCTCCCTAGGCGGTTGTGGAGCAGATC----ATGGCGAATCTTATCTCTATGTATCGGTA
1 TCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCATGTATCGGCA
* ** * * *
77281612 ATGGAGCAGATTTTAGCCACTAGTTTTATCTCTCTGAGATAGCAAGAGAGCAGGTTGGCGATTGT
66 ATGGAGCAGATTTAAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGAAAGCAGGTTGGCAATTGT
* * ** *
77281677 AGTTTTGTCTTCCTGAGGTAGCAAGGAAGCAGACCAAAAATTGCAGA
131 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTGAAGA
* * * ** * *
77281724 TATTATCTCCCTAAGTAGTAGTGAAGCAGATCGAAGACAGTAAATCTTATCTCCATGTATCGGTA
1 TCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCATGTATCGGCA
*
77281789 ATAGAGCAGATTTAA
66 ATGGAGCAGATTTAA
77281804 AGATGCAGTG
Statistics
Matches: 822, Mismatches: 117, Indels: 36
0.84 0.12 0.04
Matches are distributed among these distances:
172 2 0.00
173 298 0.36
176 5 0.01
177 505 0.61
178 8 0.01
179 4 0.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (177 bp):
TCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCATGTATCGGCA
ATGGAGCAGATTTAAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGAAAGCAGGTTGGCAATTGT
AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTGAAGA
Found at i:77281383 original size:350 final size:349
Alignment explanation
Indices: 77280670--77281803 Score: 1431
Period size: 350 Copynumber: 3.2 Consensus size: 349
77280660 AATTCACAGG
* * * * * *
77280670 TCTTGTCTCCCTAAGCAATAGTGGAACAGATCAAAGACGACAAATCTTATCTCCATGTATCGGCA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCATGTATCGGCA
* * * * *** * * *
77280735 AT-GTAGCAGATTTAAGTCACCAGCCTTATCTCCCTGAAGTTGTAG--TGGAA-TAGGCT--CAA
66 ATAG-AGCAGATTTAAGCCACTAGTCTTATCTCTCT-AAG--GTAGCAAAAAAGCAGGTTGGCGA
** * * * * *
77280794 TATACAAGTCTTATCTCCCTGAGGTTG-TAGTGGAGCAGACTGAAAATT-ACAGATCTTATCTCC
127 T-T-GTAGTCTTATCTTCCTGAGGTAGCAAG-GAAGCAGACTGAAGATTGA-AGATCTTATCTCC
* * * *
77280857 CTAAGAAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCAGCAATGGAGCAGA
188 CTAGGCAGTTGTGGAGCAGATC----ATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGA
* * * * *
77280922 TTTAAGCCACCAGCCTTATCTTTTTGAGGTAGCAAGAGAGCAGGTTGGCAATTGTAGTCTTATCT
249 TTTTAGCCACTAGCCTTATCTCTCTGAAGTAGCAAGAGAGCAGGTTGGCAATTGTAGTCTTATCT
*
77280987 TCCTAAGGTAGCAAGGAAGCAGACTGAAAATTGAAGA
314 TCCTGAGGTAGCAAGGAAGCAGACT-AAAATTGAAGA
* * *
77281024 TCTTATCTCCCTAAGCAATAGTGGAGTAGATCGAAGATGGCAAATCTTATCTCCATGTATCGACA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCATGTATCGGCA
* *
77281089 ATAGAGAAGATTTAAGCCACTAGTCTTATCTCTCTGAGGTAGCAAAAAAGCAGGTTGGCGATTGT
66 ATAGAGCAGATTTAAGCCACTAGTCTTATCTCTCTAAGGTAGCAAAAAAGCAGGTTGGCGATTGT
*
77281154 AGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAGATTGAAGATCTTATCTCCCTAGGCAG
131 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAGGCAG
* * * *
77281219 TTGTAGAGCAGATCATGGTGAATCTTATCTCCATGTATTGGCAATGGAGCATATTTTAGCCACTA
196 TTGTGGAGCAGATCATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACTA
* * *
77281284 GCCTTATCTCTCTGAAGTAGCAAGAAAACAGGCTGGCAATTGTAGTCTTATCTTCCTGAGGTAGC
261 GCCTTATCTCTCTGAAGTAGCAAGAGAGCAGGTTGGCAATTGTAGTCTTATCTTCCTGAGGTAGC
*
77281349 AAGGAAGCAGACTAAAGGTTGAAGA
326 AAGGAAGCAGACTAAA-ATTGAAGA
* *
77281374 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTCCATGTATTGGCA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCATGTATCGGCA
* *
77281439 ATAGAGCATATTTAAGCCACTAGTCTTATCTCTCTAAGGTAGCAAGAAAGCAGGTTGGCGATTGT
66 ATAGAGCAGATTTAAGCCACTAGTCTTATCTCTCTAAGGTAGCAAAAAAGCAGGTTGGCGATTGT
* * *
77281504 AGTCTTATCTTCCTGAGGTAGTAAGGAAGCAAACTGAAGATTGAAGATCTTATCTCCCTAGGCGG
131 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAGGCAG
* *
77281569 TTGTGGAGCAGATCATGGCGAATCTTATCTCTATGTATCGGTAATGGAGCAGATTTTAGCCACTA
196 TTGTGGAGCAGATCATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACTA
** * * *
77281634 GTTTTATCTCTCTG-AGATAGCAAGAGAGCAGGTTGGCGATTGTAGTTTTGTCTTCCTGAGGTAG
261 GCCTTATCTCTCTGAAG-TAGCAAGAGAGCAGGTTGGCAATTGTAGTCTTATCTTCCTGAGGTAG
* *
77281698 CAAGGAAGCAGACCAAAAATTGCAGA
325 CAAGGAAGCAGA-CTAAAATTGAAGA
* * * ** * *
77281724 TATTATCTCCCTAAGTAGTAGTGAAGCAGATCGAAGACAGTAAATCTTATCTCCATGTATCGGTA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCATGTATCGGCA
77281789 ATAGAGCAGATTTAA
66 ATAGAGCAGATTTAA
77281804 AGATGCAGTG
Statistics
Matches: 684, Mismatches: 85, Indels: 26
0.86 0.11 0.03
Matches are distributed among these distances:
349 5 0.01
350 505 0.74
351 8 0.01
353 4 0.01
354 154 0.23
355 5 0.01
356 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (349 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCATGTATCGGCA
ATAGAGCAGATTTAAGCCACTAGTCTTATCTCTCTAAGGTAGCAAAAAAGCAGGTTGGCGATTGT
AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAGGCAG
TTGTGGAGCAGATCATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACTA
GCCTTATCTCTCTGAAGTAGCAAGAGAGCAGGTTGGCAATTGTAGTCTTATCTTCCTGAGGTAGC
AAGGAAGCAGACTAAAATTGAAGA
Found at i:77284950 original size:21 final size:21
Alignment explanation
Indices: 77284929--77285006 Score: 63
Period size: 21 Copynumber: 3.7 Consensus size: 21
77284919 CTTAAAATAA
*
77284929 TATAAATGTATTAATATCTAAT
1 TATAAATAT-TTAATATCTAAT
77284951 TATAAATATTTAATAGT-TATAT
1 TATAAATATTTAATA-TCTA-AT
* *
77284973 T-TAAATATTTAAAATATAAT
1 TATAAATATTTAATATCTAAT
*
77284993 T-TATATATTCTAAT
1 TATAAATATT-TAAT
77285007 TAAATTTTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
20 11 0.23
21 25 0.52
22 12 0.25
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (21 bp):
TATAAATATTTAATATCTAAT
Found at i:77298370 original size:48 final size:48
Alignment explanation
Indices: 77298297--77298579 Score: 288
Period size: 48 Copynumber: 5.9 Consensus size: 48
77298287 GACATTTGGG
* * * *
77298297 TGATATGTGTGCTACTGTAAGACCATGTCTGGGACATGGCGTCGACCA
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCA
* * ***
77298345 TGATATGAGAGCTAGTGTAAAACCATGTCTGGTACATGGCATCGATGT
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCA
* *
77298393 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCA
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCA
* * *
77298441 T-ATCATGAGAGCCAGTGTAAGACTATGTCTGGGACATGGCATC-AACA
1 TGAT-ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCA
* * *
77298488 TTGAGAAGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATC-AGCC-
1 -TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CCA
* * * * *
77298536 TCGACATGTGAG-TCAATGTAAGACCATGTTTGGAACATGGCATC
1 T-GATATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATC
77298580 TGCAATTCGC
Statistics
Matches: 197, Mismatches: 32, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
47 7 0.04
48 188 0.95
49 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (48 bp):
TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCA
Found at i:77298469 original size:96 final size:96
Alignment explanation
Indices: 77298297--77298579 Score: 320
Period size: 96 Copynumber: 2.9 Consensus size: 96
77298287 GACATTTGGG
* * * *
77298297 TGATATGTGTGCTACTGTAAGACCATGTCTGGGACATGGCGTCGACCATGATATGAGAGCTAGTG
1 TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCATGATATGAGAGCCAGTG
* * **
77298362 TAAAACCATGTCTGGTACATGGCATCGATGT
66 TAAAACCATGTCTGGGACATGGCATCAACAT
*
77298393 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCAT-ATCATGAGAGCCAGT
1 TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCATGAT-ATGAGAGCCAGT
* *
77298457 GTAAGACTATGTCTGGGACATGGCATCAACAT
65 GTAAAACCATGTCTGGGACATGGCATCAACAT
* * * * * * * *
77298489 TGAGAAGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATC-AGCC-TCGACATGTGAGTCAA
1 TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CCAT-GATATGAGAGCCAG
* * *
77298552 TGTAAGACCATGTTTGGAACATGGCATC
64 TGTAAAACCATGTCTGGGACATGGCATC
77298580 TGCAATTCGC
Statistics
Matches: 161, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
95 4 0.02
96 156 0.97
97 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (96 bp):
TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCATGATATGAGAGCCAGTG
TAAAACCATGTCTGGGACATGGCATCAACAT
Found at i:77298574 original size:144 final size:144
Alignment explanation
Indices: 77298312--77298579 Score: 346
Period size: 144 Copynumber: 1.9 Consensus size: 144
77298302 TGTGTGCTAC
* * * *
77298312 TGTAAGACCATGTCTGGGACATGGCGTCGACCATGATATGAGAGCTAGTGTAAAACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGAACATGAGAAGAGAGCTAGTGTAAAACCATGTCTGG
* * * * * *
77298377 TACATGGCATCGATGTTGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCAT
66 GACATGGCATCGATGTCGACATGTGAGCTAATGTAAGACCATGTCTGGAACATGGCATCGACCAT
77298442 ATCATGAGAGCCAG
131 ATCATGAGAGCCAG
* * *
77298456 TGTAAGACTATGTCTGGGACATGGCATC-AACATTGAGAAGAGAGCTAGTGTAAGACCATGTTTG
1 TGTAAGACCATGTCTGGGACATGGCATCGAACA-TGAGAAGAGAGCTAGTGTAAAACCATGTCTG
*
77298520 GGACATGGCATC-A-GCCTCGACATGTGAG-TCAATGTAAGACCATGTTTGGAACATGGCATC
65 GGACATGGCATCGATG--TCGACATGTGAGCT-AATGTAAGACCATGTCTGGAACATGGCATC
77298580 TGCAATTCGC
Statistics
Matches: 106, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
142 1 0.01
143 5 0.05
144 100 0.94
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (144 bp):
TGTAAGACCATGTCTGGGACATGGCATCGAACATGAGAAGAGAGCTAGTGTAAAACCATGTCTGG
GACATGGCATCGATGTCGACATGTGAGCTAATGTAAGACCATGTCTGGAACATGGCATCGACCAT
ATCATGAGAGCCAG
Found at i:77302133 original size:101 final size:102
Alignment explanation
Indices: 77301996--77302282 Score: 283
Period size: 101 Copynumber: 2.8 Consensus size: 102
77301986 TGGTTTTAGG
* * *
77301996 TCACATGTGTGGTACTAAGTGCAGGCTACTACGTGTACCAGATGG-TTAGGTCGCATGTGTAGTA
1 TCACATGTGTGGTACTAAGTGCAGGCCACTACGTGTAACAGATGGTTTAGGTCACATGTGTAGTA
77302060 CTAAGTGCAGGCTACTATGCGTACCCGATAGCATTGA
66 CTAAGTGCAGGCTACTATGCGTACCCGATAGCATTGA
* * * * *
77302097 TCACATGTGTGGTACTAAGTGTAGGCCAGTATGTGTAAGAGATGGTTTTAGGTCACGTGTGTAGT
1 TCACATGTGTGGTACTAAGTGCAGGCCACTACGTGTAACAGATGG-TTTAGGTCACATGTGTAGT
* * ** * *
77302162 ACTAAGTGCAGGCTACTACGTGTACCAAAT-G-GTTAGG
65 ACTAAGTGCAGGCTACTATGCGTACCCGATAGCATT-GA
* * * * * * * * * * * * *
77302199 TCGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCGATAGCTTCGATCACATGTGTGGTA
1 TCACATGTGTGGTACTAAGTGCAGGCCACTACGTGTAACAGATGGTTTAGGTCACATGTGTAGTA
*
77302264 CTAAGTGCAGGCCACTATG
66 CTAAGTGCAGGCTACTATG
77302283 TGTAAGAGAT
Statistics
Matches: 151, Mismatches: 32, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
101 73 0.48
102 36 0.24
103 42 0.28
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (102 bp):
TCACATGTGTGGTACTAAGTGCAGGCCACTACGTGTAACAGATGGTTTAGGTCACATGTGTAGTA
CTAAGTGCAGGCTACTATGCGTACCCGATAGCATTGA
Found at i:77302227 original size:153 final size:152
Alignment explanation
Indices: 77301945--77302325 Score: 592
Period size: 153 Copynumber: 2.5 Consensus size: 152
77301935 GTTGTGAGAA
* * * *
77301945 CACATGTGTAGTACTACGTGTAGGCTACTATGTGTTTAA-A-ATGGTTTTAGGTCACATGTGTGG
1 CACATGTGTGGTACTAAGTGTAGGCCACTATGTG--TAAGAGATGGTTTTAGGTCACGTGTGT-G
* *
77302008 TACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCT
63 TACTAAGTGCAGGCTACTACGTGTACCAAATGGTTAGGTCGCATGTGTAGTACTAAGTGCAAGCT
77302073 ACTATGCGTACCCGATAGCATT-GAT
128 ACTATGCGTACCCGATAGC-TTCGAT
*
77302098 CACATGTGTGGTACTAAGTGTAGGCCAGTATGTGTAAGAGATGGTTTTAGGTCACGTGTGTAGTA
1 CACATGTGTGGTACTAAGTGTAGGCCACTATGTGTAAGAGATGGTTTTAGGTCACGTGTGT-GTA
77302163 CTAAGTGCAGGCTACTACGTGTACCAAATGGTTAGGTCGCATGTGTAGTACTAAGTGCAAGCTAC
65 CTAAGTGCAGGCTACTACGTGTACCAAATGGTTAGGTCGCATGTGTAGTACTAAGTGCAAGCTAC
77302228 TATGCGTACCCGATAGCTTCGAT
130 TATGCGTACCCGATAGCTTCGAT
*
77302251 CACATGTGTGGTACTAAGTGCAGGCCACTATGTGTAAGAGATGGTTTT-GGTCACAGATGTG-GT
1 CACATGTGTGGTACTAAGTGTAGGCCACTATGTGTAAGAGATGGTTTTAGGTCAC-G-TGTGTGT
77302314 ACTAAGTGCAGG
64 ACTAAGTGCAGG
77302326 TATATGTGTG
Statistics
Matches: 213, Mismatches: 10, Indels: 11
0.91 0.04 0.05
Matches are distributed among these distances:
151 3 0.01
152 23 0.11
153 183 0.86
154 4 0.02
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (152 bp):
CACATGTGTGGTACTAAGTGTAGGCCACTATGTGTAAGAGATGGTTTTAGGTCACGTGTGTGTAC
TAAGTGCAGGCTACTACGTGTACCAAATGGTTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACT
ATGCGTACCCGATAGCTTCGAT
Found at i:77302305 original size:51 final size:51
Alignment explanation
Indices: 77301945--77302334 Score: 367
Period size: 51 Copynumber: 7.7 Consensus size: 51
77301935 GTTGTGAGAA
* * *** *
77301945 CACATGTGTAGTACTACGTGTAGGCTACTATGTGTTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTTT-GGT
* * *
77301997 CACATGTGTGGTACTAAGTGCAGGCTACTACGTGTACCAGATGG-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTTTGGT
* * * * ** *
77302047 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGCATTGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTTTGGT
* * * * **
77302098 CACATGTGTGGTACTAAGTGTAGGCCAGTATGTGTAAGAGATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTTT-GGT
* * * *
77302150 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGG-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTTTGGT
* * * * * * * *
77302200 CGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCGATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTTTGGT
* * **
77302251 CACATGTGTGGTACTAAGTGCAGGCCACTATGTGTAAGAGATGGTTTTGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTTTGGT
*
77302302 CACA-GATGTGGTACTAAGTGCAGG-TA-TATGTGT
1 CACATG-TGTAGTACTAAGTGCAGGCTACTATGTGT
77302335 GTGAAAATTT
Statistics
Matches: 270, Mismatches: 64, Indels: 11
0.78 0.19 0.03
Matches are distributed among these distances:
49 7 0.03
50 82 0.30
51 108 0.40
52 73 0.27
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (51 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTTTGGT
Found at i:77306436 original size:18 final size:17
Alignment explanation
Indices: 77306403--77306441 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
77306393 TTGTATAAAT
77306403 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
77306421 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
77306438 TGTG
1 TGTG
77306442 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:77306694 original size:23 final size:23
Alignment explanation
Indices: 77306667--77306764 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
77306657 AGTGTTATTG
77306667 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
77306690 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
77306713 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
77306735 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
77306758 ATCAGTG
1 ATCAGTG
77306765 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:77306733 original size:45 final size:45
Alignment explanation
Indices: 77306669--77306757 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
77306659 TGTTATTGAT
* *
77306669 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
77306714 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
77306758 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:77313799 original size:18 final size:17
Alignment explanation
Indices: 77313766--77313804 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
77313756 TTGTATAAAT
77313766 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
77313784 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
77313801 TGTG
1 TGTG
77313805 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:77314057 original size:23 final size:23
Alignment explanation
Indices: 77314030--77314127 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
77314020 AGTGTTATTG
77314030 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
77314053 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
77314076 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
77314098 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
77314121 ATCAGTG
1 ATCAGTG
77314128 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:77314096 original size:45 final size:45
Alignment explanation
Indices: 77314032--77314120 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
77314022 TGTTATTGAT
* *
77314032 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
77314077 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
77314121 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:77319043 original size:17 final size:17
Alignment explanation
Indices: 77319021--77319053 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
77319011 TGAAACTACT
77319021 ATGCTACCTAACTTATA
1 ATGCTACCTAACTTATA
77319038 ATGCTACCTAACTTAT
1 ATGCTACCTAACTTAT
77319054 CTCTTAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.33, C:0.24, G:0.06, T:0.36
Consensus pattern (17 bp):
ATGCTACCTAACTTATA
Found at i:77323955 original size:20 final size:20
Alignment explanation
Indices: 77323932--77323990 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
77323922 TAAACATGGT
77323932 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
* *
77323952 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAC
77323972 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
77323991 GGTATTCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:77324072 original size:23 final size:23
Alignment explanation
Indices: 77324042--77324090 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
77324032 AGGAAGTGCA
77324042 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77324065 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77324088 AAA
1 AAA
77324091 AGAGGCTAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:77324107 original size:25 final size:23
Alignment explanation
Indices: 77324042--77324111 Score: 88
Period size: 23 Copynumber: 3.0 Consensus size: 23
77324032 AGGAAGTGCA
*
77324042 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTAGGCCCCAGTTATT
*
77324065 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTAGGCCCCAGTTATT
77324088 AAAAGAGGC-TAGGCCTCCAGTTAT
1 -AAAG-GGCTTAGGCC-CCAGTTAT
77324112 ACGATAAAGC
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
23 23 0.53
24 9 0.21
25 11 0.26
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (23 bp):
AAAGGGCTTAGGCCCCAGTTATT
Found at i:77324337 original size:31 final size:31
Alignment explanation
Indices: 77324302--77324364 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
77324292 CGTTTACAGT
*
77324302 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
**
77324333 AAAGGCTTCAGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
77324364 A
1 A
77324365 CTATGAAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:77335895 original size:24 final size:24
Alignment explanation
Indices: 77335855--77335921 Score: 61
Period size: 23 Copynumber: 2.9 Consensus size: 24
77335845 ATTTAATTAG
* *
77335855 ATAAATTAATTAA-ATTTATTTGAA
1 ATAAA-TAAATAATATTTATTGGAA
*
77335879 ATAAATAAATAATATTT-TGGGAA
1 ATAAATAAATAATATTTATTGGAA
*
77335902 ATAGA-AAA-AATATTTATTGG
1 ATAAATAAATAATATTTATTGG
77335922 GTTGGATGAA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
21 7 0.19
22 6 0.17
23 14 0.39
24 9 0.25
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (24 bp):
ATAAATAAATAATATTTATTGGAA
Found at i:77345454 original size:7 final size:7
Alignment explanation
Indices: 77345442--77345488 Score: 55
Period size: 7 Copynumber: 7.1 Consensus size: 7
77345432 TTGAAGACTT
77345442 TTATTTA
1 TTATTTA
77345449 TTATTTA
1 TTATTTA
77345456 TTATTTA
1 TTATTTA
77345463 TTATTT-
1 TTATTTA
*
77345469 TTACTT-
1 TTATTTA
*
77345475 TTATCT-
1 TTATTTA
77345481 TTATTTA
1 TTATTTA
77345488 T
1 T
77345489 CTTTTTTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
6 14 0.40
7 21 0.60
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.72
Consensus pattern (7 bp):
TTATTTA
Found at i:77345461 original size:14 final size:13
Alignment explanation
Indices: 77345440--77345488 Score: 64
Period size: 14 Copynumber: 3.8 Consensus size: 13
77345430 TTTTGAAGAC
77345440 TTTTATTTATTAT
1 TTTTATTTATTAT
77345453 TTATTATTTATTAT
1 TT-TTATTTATTAT
*
77345467 TTTTACTT-TTAT
1 TTTTATTTATTAT
*
77345479 CTTTATTTAT
1 TTTTATTTAT
77345489 CTTTTTTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
12 10 0.32
13 8 0.26
14 13 0.42
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTTATTTATTAT
Found at i:77350731 original size:23 final size:23
Alignment explanation
Indices: 77350655--77350731 Score: 86
Period size: 22 Copynumber: 3.3 Consensus size: 23
77350645 TTGATAAACA
* *
77350655 GTAAGCTCTATTGAGCAGAAAACG
1 GTAAGCTCTATTGAGCTG-AATCG
*
77350679 GTAAGCTCTATTGAGCTGAAT-A
1 GTAAGCTCTATTGAGCTGAATCG
*
77350701 GTAAGCTCT-TTCGAGTTGAATCG
1 GTAAGCTCTATT-GAGCTGAATCG
77350724 GTAAGCTC
1 GTAAGCTC
77350732 CGATGAGCTG
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.04
22 17 0.37
23 10 0.22
24 17 0.37
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.29
Consensus pattern (23 bp):
GTAAGCTCTATTGAGCTGAATCG
Found at i:77352947 original size:36 final size:36
Alignment explanation
Indices: 77352900--77352971 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
77352890 ATTTCCCATA
*
77352900 TTTCTTACCTTTCACC-AGGAGCTTTCACTATTCACC
1 TTTCTTACCTTTCACCAAGGA-CTTTCACTATCCACC
77352936 TTTCTTACCTTTCACCAAGGACTTTCACTATCCACC
1 TTTCTTACCTTTCACCAAGGACTTTCACTATCCACC
77352972 ACTTTTCTTG
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 30 0.88
37 4 0.12
ACGTcount: A:0.21, C:0.35, G:0.07, T:0.38
Consensus pattern (36 bp):
TTTCTTACCTTTCACCAAGGACTTTCACTATCCACC
Found at i:77359283 original size:9 final size:9
Alignment explanation
Indices: 77359271--77359325 Score: 56
Period size: 9 Copynumber: 5.7 Consensus size: 9
77359261 ATAAGAAAAG
77359271 TAAATTAAA
1 TAAATTAAA
*
77359280 TAAATTTAA
1 TAAATTAAA
*
77359289 TAAATTTTATCAG
1 TAAA--TTA--AA
77359302 TAAATTAAA
1 TAAATTAAA
77359311 TAAATTAAA
1 TAAATTAAA
77359320 TAAATT
1 TAAATT
77359326 TTATCCCTCC
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 28 0.74
11 5 0.13
13 5 0.13
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (9 bp):
TAAATTAAA
Found at i:77359304 original size:31 final size:31
Alignment explanation
Indices: 77359269--77359330 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
77359259 AAATAAGAAA
*
77359269 AGTAAATTAAATAAATTTAATAAATTTTATC
1 AGTAAATTAAATAAATTAAATAAATTTTATC
77359300 AGTAAATTAAATAAATTAAATAAATTTTATC
1 AGTAAATTAAATAAATTAAATAAATTTTATC
77359331 CCTCCAAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.40
Consensus pattern (31 bp):
AGTAAATTAAATAAATTAAATAAATTTTATC
Found at i:77377778 original size:47 final size:47
Alignment explanation
Indices: 77377697--77377860 Score: 158
Period size: 47 Copynumber: 3.5 Consensus size: 47
77377687 GCCGATGCCG
* * *
77377697 TGTCCCAGACACGGTCTTACACAGGCTTAT-ATCTCAAGTTGAAGCCA
1 TGTCCCAGACATGGTCTTACACTGAC-TATCATCTCAAGTTGAAGCCA
* * * *
77377744 TGTCCAAGACATGGTCTTACACTGACTATCATCTCTTAGTCGACG-CA
1 TGTCCCAGACATGGTCTTACACTGACTATCATCTC-AAGTTGAAGCCA
* *
77377791 TGTCCCAGACAT-GTCTTACACT-AGC-ACTCGTCTCAATGTTGATGCCA
1 TGTCCCAGACATGGTCTTACACTGA-CTA-TCATCTCAA-GTTGAAGCCA
*
77377838 TGTCCTAGACATGGTCTTACACT
1 TGTCCCAGACATGGTCTTACACT
77377861 AGCTCTCACA
Statistics
Matches: 97, Mismatches: 13, Indels: 13
0.79 0.11 0.11
Matches are distributed among these distances:
45 3 0.03
46 25 0.26
47 53 0.55
48 16 0.16
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (47 bp):
TGTCCCAGACATGGTCTTACACTGACTATCATCTCAAGTTGAAGCCA
Found at i:77388745 original size:37 final size:37
Alignment explanation
Indices: 77388695--77388777 Score: 139
Period size: 37 Copynumber: 2.2 Consensus size: 37
77388685 CAGCCACAAT
* *
77388695 AAACAATATTCCATTTGTGTATTTTACTCATCTATGA
1 AAACAACATTCCATTTGTGCATTTTACTCATCTATGA
77388732 AAACAACATTCCATTTGTGCATTTTACTCATCTATGA
1 AAACAACATTCCATTTGTGCATTTTACTCATCTATGA
*
77388769 AAATAACAT
1 AAACAACAT
77388778 CTTGGTATAT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.39
Consensus pattern (37 bp):
AAACAACATTCCATTTGTGCATTTTACTCATCTATGA
Found at i:77391619 original size:72 final size:71
Alignment explanation
Indices: 77391484--77391614 Score: 187
Period size: 72 Copynumber: 1.9 Consensus size: 71
77391474 AGCCAATTTA
* * *
77391484 TCCCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACATT
1 TCCCGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATT
77391549 TATCCTC
65 TATCCTC
*
77391556 TCCCGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGCGACCTAGCTAC
1 TCCCGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
77391615 TACATAGTAT
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
69 24 0.44
70 1 0.02
71 1 0.02
72 28 0.52
ACGTcount: A:0.21, C:0.32, G:0.16, T:0.31
Consensus pattern (71 bp):
TCCCGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTT
ATCCTC
Found at i:77395357 original size:39 final size:40
Alignment explanation
Indices: 77395119--77395420 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
77395109 TTGAATGCTG
* * * * * *
77395119 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
77395159 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
77395199 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
77395239 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
77395279 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
77395319 TCCGGGTTAAGTCCCGAAGGCA-TCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
77395358 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
77395397 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
77395421 TGAACGAGGA
Statistics
Matches: 239, Mismatches: 19, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
39 72 0.30
40 159 0.67
41 8 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:77403135 original size:40 final size:40
Alignment explanation
Indices: 77403059--77403354 Score: 391
Period size: 40 Copynumber: 7.4 Consensus size: 40
77403049 GCTGTCCGGC
* * * * * *
77403059 TAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGAT
1 TAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGT
* * * *
77403099 TAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGT
1 TAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
77403139 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
77403179 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
77403219 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
* *
77403259 TAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAATCCGGGT
1 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
* * * * *
77403299 TATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGC
1 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
*
77403338 TATGTCCCGAAGGCATT
1 TAAGTCCCGAAGGCATT
77403355 TGAACGAGGA
Statistics
Matches: 234, Mismatches: 19, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 35 0.15
40 191 0.82
41 8 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
Found at i:77410222 original size:72 final size:71
Alignment explanation
Indices: 77410086--77410244 Score: 180
Period size: 72 Copynumber: 2.3 Consensus size: 71
77410076 CTAGCCAATT
* * * * *
77410086 TATCCCGTAGCTCTCTTGTCTACATGGTATCCTTCACTTGGAATCACACATGTGACCTAGCTACA
1 TATCCCGTAGCTCTCTTGTCTACATGGGATACATCAC-TCGAATCACACATGCGACCTAGCTACA
77410151 TTTATCC
65 TTTATCC
* *
77410158 TATCCCGTAGCTCTCTTGTCTACATGGGATACATC-C-CGTATCTCACATGCGACCTAGCTAC-T
1 TATCCCGTAGCTCTCTTGTCTACATGGGATACATCACTCGAATCACACATGCGACCTAGCTACAT
** **
77410220 ACATAG
66 TTATCC
*
77410226 TATCTCGTAGCTCTCTTGT
1 TATCCCGTAGCTCTCTTGT
77410245 ACACATGATG
Statistics
Matches: 75, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
68 21 0.28
69 21 0.28
71 1 0.01
72 32 0.43
ACGTcount: A:0.21, C:0.30, G:0.15, T:0.34
Consensus pattern (71 bp):
TATCCCGTAGCTCTCTTGTCTACATGGGATACATCACTCGAATCACACATGCGACCTAGCTACAT
TTATCC
Found at i:77422103 original size:43 final size:42
Alignment explanation
Indices: 77422044--77422135 Score: 114
Period size: 42 Copynumber: 2.2 Consensus size: 42
77422034 TTTCAGACGT
* *
77422044 GGTCTTACATGTAATCAAACATCGATA-CCACTGTCCCAGACAA
1 GGTCTTACATGAAATCAAACA-CGA-AGCCAATGTCCCAGACAA
* * *
77422087 GGTCTTACATGAAATCATATACGAAGCCAATGTCCCAGACAT
1 GGTCTTACATGAAATCAAACACGAAGCCAATGTCCCAGACAA
77422129 GGTCTTA
1 GGTCTTA
77422136 TATGTAAAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
41 1 0.02
42 24 0.56
43 18 0.42
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (42 bp):
GGTCTTACATGAAATCAAACACGAAGCCAATGTCCCAGACAA
Found at i:77422133 original size:42 final size:43
Alignment explanation
Indices: 77422037--77422179 Score: 123
Period size: 44 Copynumber: 3.3 Consensus size: 43
77422027 GCCAACTTTT
* * *
77422037 CAGACGTGGTCTTACATGTAATCAAACATCGATACCACTGTCC
1 CAGACATGGTCTTACATGAAATCAAACATCGATACCAATGTCC
* * *
77422080 CAGACAAGGTCTTACATGAAATCATATA-CGA-AGCCAATGTCC
1 CAGACATGGTCTTACATGAAATCAAACATCGATA-CCAATGTCC
* * * *
77422122 CAGACATGGTCTTATATGTAAAAT-AGAA-GTTGATGCCAATGTCC
1 CAGACATGGTCTTACATG--AAATCA-AACATCGATACCAATGTCC
*
77422166 CAGACGTGGTCTTA
1 CAGACATGGTCTTA
77422180 TACGTAAAAC
Statistics
Matches: 81, Mismatches: 13, Indels: 11
0.77 0.12 0.10
Matches are distributed among these distances:
41 1 0.01
42 27 0.33
43 24 0.30
44 29 0.36
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (43 bp):
CAGACATGGTCTTACATGAAATCAAACATCGATACCAATGTCC
Found at i:77424712 original size:12 final size:12
Alignment explanation
Indices: 77424689--77424729 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
77424679 GTCAGGCTTT
77424689 ACACGG-CTAGC
1 ACACGGCCTAGC
77424700 ACACGGCCTAGC
1 ACACGGCCTAGC
*
77424712 ACACGGCCTAAC
1 ACACGGCCTAGC
77424724 ACACGG
1 ACACGG
77424730 GATTGTGAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
11 6 0.21
12 22 0.79
ACGTcount: A:0.29, C:0.39, G:0.24, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:77433910 original size:29 final size:29
Alignment explanation
Indices: 77433877--77433951 Score: 132
Period size: 29 Copynumber: 2.6 Consensus size: 29
77433867 TCATATTACA
77433877 TTTTAGTCACTTATGTTTGAAATGCTATG
1 TTTTAGTCACTTATGTTTGAAATGCTATG
*
77433906 TTTTAGTCACTTATGTTTGAAATGTTATG
1 TTTTAGTCACTTATGTTTGAAATGCTATG
*
77433935 ATTTAGTCACTTATGTT
1 TTTTAGTCACTTATGTT
77433952 ATCGTTTTAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.24, C:0.09, G:0.16, T:0.51
Consensus pattern (29 bp):
TTTTAGTCACTTATGTTTGAAATGCTATG
Found at i:77447163 original size:23 final size:23
Alignment explanation
Indices: 77447137--77447181 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
77447127 TGGGTATGTG
* * *
77447137 ATGACGTTATTTTATAAATATGC
1 ATGAAGTTATCTTAAAAATATGC
*
77447160 ATGAATTTATCTTAAAAATATG
1 ATGAAGTTATCTTAAAAATATG
77447182 TTGAATTGGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.42
Consensus pattern (23 bp):
ATGAAGTTATCTTAAAAATATGC
Found at i:77452040 original size:18 final size:19
Alignment explanation
Indices: 77452013--77452063 Score: 59
Period size: 21 Copynumber: 2.6 Consensus size: 19
77452003 GTCGAAAATT
77452013 GTATCGATACTTACT-CAA
1 GTATCGATACTTACTACAA
* *
77452031 GTATCAATACATTTCTACCAA
1 GTATCGATAC-TTACTA-CAA
77452052 GTATCGATACTT
1 GTATCGATACTT
77452064 TTGTATTTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 9 0.33
19 4 0.15
20 2 0.07
21 12 0.44
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.35
Consensus pattern (19 bp):
GTATCGATACTTACTACAA
Found at i:77457634 original size:18 final size:19
Alignment explanation
Indices: 77457591--77457634 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
77457581 TTAGTGATTC
*
77457591 AATATAATATATAATTATT
1 AATATAATATATAATAATT
*
77457610 -ATTTAATATAT-ATAATT
1 AATATAATATATAATAATT
77457627 AATATAAT
1 AATATAAT
77457635 TAGTTTTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
AATATAATATATAATAATT
Found at i:77458831 original size:33 final size:33
Alignment explanation
Indices: 77458789--77458854 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
77458779 TGTTTTGGTG
77458789 CAAGTAAACTTAAACCATTTATACACAAAATGA
1 CAAGTAAACTTAAACCATTTATACACAAAATGA
* *
77458822 CAAGTAAACTTAAACCATTTGTGCACAAAATGA
1 CAAGTAAACTTAAACCATTTATACACAAAATGA
77458855 AGTTTGTGTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.48, C:0.18, G:0.09, T:0.24
Consensus pattern (33 bp):
CAAGTAAACTTAAACCATTTATACACAAAATGA
Found at i:77460341 original size:14 final size:15
Alignment explanation
Indices: 77460322--77460351 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
77460312 TGGAAAATTT
77460322 AATAATTTTAA-AAA
1 AATAATTTTAATAAA
77460336 AATAATTTTAATAAA
1 AATAATTTTAATAAA
77460351 A
1 A
77460352 GTTCAATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
AATAATTTTAATAAA
Found at i:77463832 original size:39 final size:39
Alignment explanation
Indices: 77463789--77463869 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
77463779 TATAAACTTG
77463789 ATTAGCCATTCCAATATCTAATCATTTTCAAACATTTCC
1 ATTAGCCATTCCAATATCTAATCATTTTCAAACATTTCC
77463828 ATTAGCCATTCCAATATCTAATCATTTTCAAACATTTCC
1 ATTAGCCATTCCAATATCTAATCATTTTCAAACATTTCC
77463867 ATT
1 ATT
77463870 CCATCCATGG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.33, C:0.25, G:0.02, T:0.40
Consensus pattern (39 bp):
ATTAGCCATTCCAATATCTAATCATTTTCAAACATTTCC
Found at i:77467118 original size:27 final size:27
Alignment explanation
Indices: 77467065--77467118 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
77467055 GCTGAAGACT
* * * *
77467065 GACTTGCTATAGAAGAAACTCTTGCTG
1 GACTTGCCAAAGAAGAAACCCTGGCTG
77467092 GACTTGCCAAAGAAGAAACCCTGGCTG
1 GACTTGCCAAAGAAGAAACCCTGGCTG
77467119 AAGCTGATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.22
Consensus pattern (27 bp):
GACTTGCCAAAGAAGAAACCCTGGCTG
Found at i:77482302 original size:15 final size:15
Alignment explanation
Indices: 77482282--77482311 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
77482272 CTTAATTTAC
77482282 CCACTTTTTTAAGAA
1 CCACTTTTTTAAGAA
77482297 CCACTTTTTTAAGAA
1 CCACTTTTTTAAGAA
77482312 TGATTATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.20, G:0.07, T:0.40
Consensus pattern (15 bp):
CCACTTTTTTAAGAA
Found at i:77486527 original size:11 final size:11
Alignment explanation
Indices: 77486502--77486536 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
77486492 GGTAAAACGG
77486502 TAAATAAATAAT
1 TAAATAAA-AAT
*
77486514 TAAATATAAAT
1 TAAATAAAAAT
77486525 TAAATAAAAAT
1 TAAATAAAAAT
77486536 T
1 T
77486537 TAGTTGTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 14 0.67
12 7 0.33
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
TAAATAAAAAT
Found at i:77490220 original size:68 final size:69
Alignment explanation
Indices: 77490096--77490230 Score: 173
Period size: 68 Copynumber: 2.0 Consensus size: 69
77490086 TGATTAAACT
** * * * * *
77490096 TAATCACTTTAATATTAAATTAATATAATATTTATCAAGATAAATGTTAAATTAAATTTAATATT
1 TAATCACTTTAATATTAAAAGAAAAAAATATCTATCAAGATAAATATTAAATTAAATTAAATATT
77490161 AAGA
66 AAGA
* * *
77490165 TAATCACTTTGATATTAAAAGAAAAAAATA-CTATTAAGATAAGTATTAAATTAAATTAAATATT
1 TAATCACTTTAATATTAAAAGAAAAAAATATCTATCAAGATAAATATTAAATTAAATTAAATATT
77490229 AA
66 AA
77490231 ACTATTAAAA
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
68 31 0.55
69 25 0.45
ACGTcount: A:0.52, C:0.04, G:0.05, T:0.39
Consensus pattern (69 bp):
TAATCACTTTAATATTAAAAGAAAAAAATATCTATCAAGATAAATATTAAATTAAATTAAATATT
AAGA
Found at i:77493375 original size:79 final size:81
Alignment explanation
Indices: 77493266--77493448 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
77493256 TACTCGTTCA
* * *
77493266 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACACGCACAAATGCCTTC-GGATCTTAACCCGG
* *
77493329 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
77493346 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACACGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACACGCACAAATGCCTTCGGATCTTAACCCGGA
* *
77493409 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
77493425 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
77493449 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACACGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:77493383 original size:39 final size:40
Alignment explanation
Indices: 77493264--77493448 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
77493254 GCTACTCGTT
*
77493264 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
77493304 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
77493344 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACACGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
77493383 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
77493424 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77493449 CATCATTCGA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 79 0.63
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:77499214 original size:39 final size:39
Alignment explanation
Indices: 77499140--77499322 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 39
77499130 GCTACTCGTT
*
77499140 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCA
*
77499180 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
* *
77499219 C-AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
77499257 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
77499298 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
77499323 CATCATTCGA
Statistics
Matches: 125, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
38 35 0.28
39 35 0.28
40 44 0.35
41 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:77499255 original size:77 final size:81
Alignment explanation
Indices: 77499142--77499322 Score: 246
Period size: 77 Copynumber: 2.3 Consensus size: 81
77499132 TACTCGTTCA
* *
77499142 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGA-CTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
77499205 TTTAGTAAC-TCGCAC
66 TATAGTAACTTAGCAC
**
77499220 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
77499283 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
77499299 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
77499323 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
77 35 0.39
78 28 0.31
79 16 0.18
80 11 0.12
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:77513575 original size:29 final size:29
Alignment explanation
Indices: 77513542--77513615 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
77513532 GTTGTGAGAT
* *
77513542 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
77513571 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
77513600 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
77513616 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:77518266 original size:10 final size:10
Alignment explanation
Indices: 77518216--77518267 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
77518206 AAATATGTCG
*
77518216 AAAA-TAATC
1 AAAATTAATT
*
77518225 AAAATTAATC
1 AAAATTAATT
77518235 AAAATTAAATAT
1 AAAATT-AAT-T
*
77518247 ATAATTAATT
1 AAAATTAATT
77518257 AAAATTAATT
1 AAAATTAATT
77518267 A
1 A
77518268 TGTTAATAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
9 4 0.11
10 22 0.59
11 6 0.16
12 5 0.14
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.35
Consensus pattern (10 bp):
AAAATTAATT
Found at i:77532482 original size:21 final size:20
Alignment explanation
Indices: 77532421--77532478 Score: 53
Period size: 23 Copynumber: 2.7 Consensus size: 20
77532411 TAAAAATGAT
**
77532421 AAAATTATAAATTAATACATA
1 AAAATTAT-AATTAATTTATA
*
77532442 ATAAATTTATATTTTAATTTATA
1 A-AAA-TTATA-ATTAATTTATA
77532465 AAAATTATAATTAA
1 AAAATTATAATTAA
77532479 ATTTCTACCC
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
20 4 0.13
21 6 0.20
22 7 0.23
23 13 0.43
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
AAAATTATAATTAATTTATA
Found at i:77533495 original size:17 final size:19
Alignment explanation
Indices: 77533465--77533501 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
77533455 TTAACAATAA
77533465 TTTTATCTCAAAAA-TATT
1 TTTTATCTCAAAAAGTATT
*
77533483 TTTTAT-TCTAAAAGTATT
1 TTTTATCTCAAAAAGTATT
77533501 T
1 T
77533502 CTGAAAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.35, C:0.08, G:0.03, T:0.54
Consensus pattern (19 bp):
TTTTATCTCAAAAAGTATT
Found at i:77538012 original size:20 final size:20
Alignment explanation
Indices: 77537987--77538026 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
77537977 AAATTTACTA
77537987 AAATAATATTACA-TATTTTT
1 AAATAA-ATTACATTATTTTT
*
77538007 AAATAAGTTACATTATTTTT
1 AAATAAATTACATTATTTTT
77538027 TTAACAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (20 bp):
AAATAAATTACATTATTTTT
Found at i:77546356 original size:28 final size:28
Alignment explanation
Indices: 77546291--77546361 Score: 81
Period size: 28 Copynumber: 2.5 Consensus size: 28
77546281 TTCTCTTGAA
*
77546291 TAGGGTTTAAAATTTTAAGATTTAGTGT
1 TAGGGTTTACAATTTTAAGATTTAGTGT
* * *
77546319 TAAGGCTTACAATTTTATGATTTTA-TGT
1 TAGGGTTTACAATTTTAAGA-TTTAGTGT
*
77546347 TTGGGTTTACAATTT
1 TAGGGTTTACAATTT
77546362 AAACCTTTTG
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
28 31 0.89
29 4 0.11
ACGTcount: A:0.28, C:0.04, G:0.18, T:0.49
Consensus pattern (28 bp):
TAGGGTTTACAATTTTAAGATTTAGTGT
Found at i:77546819 original size:25 final size:25
Alignment explanation
Indices: 77546789--77546843 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
77546779 AAAATAAAAA
* *
77546789 AAATAAATTAATTTAAATAATA-TTT
1 AAATAAATTAATAT-AATAATACATT
*
77546814 AAATAATTTAATATAATAATACATT
1 AAATAAATTAATATAATAATACATT
77546839 AAATA
1 AAATA
77546844 TTTAAATAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 7 0.27
25 19 0.73
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (25 bp):
AAATAAATTAATATAATAATACATT
Found at i:77546825 original size:16 final size:16
Alignment explanation
Indices: 77546806--77546856 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
77546796 TTAATTTAAA
77546806 TAATATTTAAATAATT
1 TAATATTTAAATAATT
*
77546822 TAATA-TAATAATACATT
1 TAATATTTA-AATA-ATT
*
77546839 AAATATTTAAATAATT
1 TAATATTTAAATAATT
77546855 TA
1 TA
77546857 GTATAATGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
15 2 0.07
16 13 0.46
17 11 0.39
18 2 0.07
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TAATATTTAAATAATT
Found at i:77546829 original size:21 final size:21
Alignment explanation
Indices: 77546792--77546831 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
77546782 ATAAAAAAAA
77546792 TAAATTAATTTAAATAATATT
1 TAAATTAATTTAAATAATATT
77546813 TAAA-TAATTTAATATAATA
1 TAAATTAATTTAA-ATAATA
77546832 ATACATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
TAAATTAATTTAAATAATATT
Found at i:77546846 original size:33 final size:33
Alignment explanation
Indices: 77546807--77546877 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 33
77546797 TAATTTAAAT
*
77546807 AATATTTAAATAATTTAATATAATAATACATTA
1 AATATTTAAATAATTTAATATAATAATACATAA
* * *
77546840 AATATTTAAATAATTTAGTATAATGATATATAA
1 AATATTTAAATAATTTAATATAATAATACATAA
77546873 AATAT
1 AATAT
77546878 ATCAATTTAG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.42
Consensus pattern (33 bp):
AATATTTAAATAATTTAATATAATAATACATAA
Found at i:77548490 original size:36 final size:36
Alignment explanation
Indices: 77548443--77548515 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
77548433 TTGTGAAAGG
77548443 TGTTAGCATGAAAACACCTAAAAGGATTATTTTGCA
1 TGTTAGCATGAAAACACCTAAAAGGATTATTTTGCA
77548479 TGTTAGCATGAAAACACCTAAAAGGATTATTTTGCA
1 TGTTAGCATGAAAACACCTAAAAGGATTATTTTGCA
77548515 T
1 T
77548516 AAATTGCAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32
Consensus pattern (36 bp):
TGTTAGCATGAAAACACCTAAAAGGATTATTTTGCA
Found at i:77549177 original size:45 final size:46
Alignment explanation
Indices: 77549037--77549203 Score: 169
Period size: 45 Copynumber: 3.6 Consensus size: 46
77549027 GTGAGCTAGA
* * * *
77549037 GTAAGACATGTCTGGGACATGCATTGGCCAC-ATTATGAGAGCCAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGAGAGCCAGT
* * ** * * *
77549083 GTAAGACCATGTCCGAGACATGGCATTAGCATTGAGACGAGAGCTAGT
1 GTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGAGAGCCAGT
77549131 GTAAGACATGTCT-GGACATGCATCGGCCTCGAGACGTA-AGCCAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG-AGAGCCAGT
*
77549176 GTAAGAAATGTCTGGGACATGCATCGGC
1 GTAAGACATGTCTGGGACATGCATCGGC
77549204 TACTAGATGT
Statistics
Matches: 99, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
45 31 0.31
46 26 0.26
47 18 0.18
48 23 0.23
49 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (46 bp):
GTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGAGAGCCAGT
Found at i:77555623 original size:68 final size:66
Alignment explanation
Indices: 77555551--77555722 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
77555541 CATCATGTGT
* * * *
77555551 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
77555614 TGTAG
62 TGTAG
** * *
77555619 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
77555684 AG
65 AG
* * * *
77555686 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
77555723 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:77555656 original size:64 final size:64
Alignment explanation
Indices: 77555575--77555758 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
77555565 AGACATTATG
* * *
77555575 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
77555639 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
77555704 AA
63 AA
* * *
77555706 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
77555759 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:77558917 original size:27 final size:26
Alignment explanation
Indices: 77558865--77558916 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
77558855 CACCAATGAA
*
77558865 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
*
77558891 TCGGGGGATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
77558917 CCTTCTCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.35, G:0.25, T:0.13
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:77558918 original size:102 final size:103
Alignment explanation
Indices: 77558731--77559016 Score: 458
Period size: 102 Copynumber: 2.8 Consensus size: 103
77558721 AACCCGTTAT
* *
77558731 TGGTGGATCTCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
*
77558796 AATCAGCACATAGCAA-CCCCCTT-TTATTTCAAAGATA
66 -ATCAGCACATAGCAACCCCCCTTCTCATTTCAAAGATA
77558833 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
77558898 ATCAGCACATAGCAACCCCCCTTCTCATTTCAAAGATA
66 ATCAGCACATAGCAACCCCCCTTCTCATTTCAAAGATA
* *
77558936 TGGTGGATATCGCACATAGCACCACCAATGAATCGGGG-ATCACGCAC-TAGCAACCCCTCAGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCA-GCACTTAGCAACCCCTCGGGG
*
77558999 AATCA-CACA-AGCAACCCC
65 GATCAGCACATAGCAACCCC
77559017 TTTTATATAC
Statistics
Matches: 175, Mismatches: 6, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
100 9 0.05
101 19 0.11
102 93 0.53
103 54 0.31
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.19
Consensus pattern (103 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
ATCAGCACATAGCAACCCCCCTTCTCATTTCAAAGATA
Found at i:77559378 original size:29 final size:29
Alignment explanation
Indices: 77559345--77559408 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
77559335 TAATCCACCA
77559345 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
77559374 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
77559404 CCCAA
1 CCCAA
77559409 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:77559382 original size:30 final size:30
Alignment explanation
Indices: 77559352--77559408 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
77559342 CCACCCAACT
77559352 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
77559381 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
77559409 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:77566416 original size:101 final size:102
Alignment explanation
Indices: 77566232--77566489 Score: 436
Period size: 100 Copynumber: 2.6 Consensus size: 102
77566222 TAACCGTTAT
* *
77566232 TGGTGGATCTCGCACTTAGCACCACCACTGAATCGGGGAATCA-CACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
77566296 AATCAGCACATAGCAACCCCCTTT-ATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCATTTCAAAGATA
77566332 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
77566397 AATCAGCACATAGCAACCCCCTTTCATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCATTTCAAAGATA
* **
77566434 TGGTGGATA-CGCAC-TAGCACCACC-ATAAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
77566490 TTTATATACA
Statistics
Matches: 151, Mismatches: 5, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
99 29 0.19
100 51 0.34
101 50 0.33
102 21 0.14
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (102 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTCATTTCAAAGATA
Found at i:77566850 original size:29 final size:29
Alignment explanation
Indices: 77566817--77566880 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
77566807 TAATCCACCA
77566817 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
77566846 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
77566876 CCCAA
1 CCCAA
77566881 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:77566854 original size:30 final size:30
Alignment explanation
Indices: 77566824--77566880 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
77566814 CCACCCAACT
77566824 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
77566853 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
77566881 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:77567964 original size:25 final size:25
Alignment explanation
Indices: 77567927--77567976 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
77567917 TTGTAAATCA
77567927 GAAAAATATCTTTAGA-AATTTTCT
1 GAAAAATATCTTTAGAGAATTTTCT
*
77567951 GAAATAATCTCTTTAGAGAATTTTCT
1 GAAA-AATATCTTTAGAGAATTTTCT
77567977 CTCTACAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.17
25 11 0.48
26 8 0.35
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.42
Consensus pattern (25 bp):
GAAAAATATCTTTAGAGAATTTTCT
Found at i:77568210 original size:37 final size:36
Alignment explanation
Indices: 77568148--77568223 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
77568138 GATAATCAAT
*
77568148 TTAATATTAATTTAATAAAATACTATTAAGATAAATA
1 TTAATATTAATTTAATAAAATACTATTAAAAT-AATA
*
77568185 TTAA-ATTAAATTTAATATTAA-ACTATTAAAATAATA
1 TTAATATT-AATTTAATA-AAATACTATTAAAATAATA
77568221 TTA
1 TTA
77568224 TTTCTGGAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 10 0.29
37 23 0.66
38 2 0.06
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (36 bp):
TTAATATTAATTTAATAAAATACTATTAAAATAATA
Found at i:77575295 original size:25 final size:25
Alignment explanation
Indices: 77575267--77575337 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
77575257 CCCAATACGT
77575267 AGCTCGCATGAGCTTTCCGTTATTC
1 AGCTCGCATGAGCTTTCCGTTATTC
* * *
77575292 AGCTCACATGAGCTTCCCATTATTC
1 AGCTCGCATGAGCTTTCCGTTATTC
* * * *
77575317 AACTGGGAAGAGCTTTCCGTT
1 AGCTCGCATGAGCTTTCCGTT
77575338 TATAGCTCGT
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.32
Consensus pattern (25 bp):
AGCTCGCATGAGCTTTCCGTTATTC
Found at i:77576578 original size:162 final size:162
Alignment explanation
Indices: 77576293--77576605 Score: 432
Period size: 162 Copynumber: 1.9 Consensus size: 162
77576283 CATGTGTCAT
*
77576293 TGTATATTTAAACTTGTGCAAGTCAGTATGCTCAACACGGCCTAGCACACGAGCATGTGACTTAG
1 TGTATATTTAAAATTGTGCAAGTCAGTATGCTCAACACGGCCTAGCACACGAGCATGTGACTTAG
* * * * *
77576358 CCGTATGACCCAAGTTATGGAGTTACACGGGCAAGAACATGGGCTGAGACATGGCCGTGTGTCCC
66 CCGTATGACCCAAGTCAGGGAGTTACACAGGCAAGAACACGGGCTGAGACACGGCCGTGTGTCCC
* *
77576423 TATTTTGATTGCCCACACGGCCGTGTGTCTCC
131 TATTTCGAATGCCCACACGGCCGTGTGTCTCC
* * *
77576455 TGTATCTTTAAAATTGTGCAAG-CTAGTATGCTCAACACGGCCTAGCACACGGGCGTGTGACTT-
1 TGTATATTTAAAATTGTGCAAGTC-AGTATGCTCAACACGGCCTAGCACACGAGCATGTGACTTA
* * * * * * *
77576518 GACTGTGTGACCTAAGTCAGGGAGTTACACAGGTACGGACACGGGCTGAGACACGGCCGTGTGTT
65 G-CCGTATGACCCAAGTCAGGGAGTTACACAGGCAAGAACACGGGCTGAGACACGGCCGTGTGTC
77576583 CCTATTTCGAATGCCCACACGGC
129 CCTATTTCGAATGCCCACACGGC
77576606 TTGAGACACT
Statistics
Matches: 131, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
161 2 0.02
162 129 0.98
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (162 bp):
TGTATATTTAAAATTGTGCAAGTCAGTATGCTCAACACGGCCTAGCACACGAGCATGTGACTTAG
CCGTATGACCCAAGTCAGGGAGTTACACAGGCAAGAACACGGGCTGAGACACGGCCGTGTGTCCC
TATTTCGAATGCCCACACGGCCGTGTGTCTCC
Found at i:77582709 original size:5 final size:5
Alignment explanation
Indices: 77582699--77582724 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
77582689 ATTAAGTGAT
77582699 ATAAA ATAAA ATAAA ATAAA ATAAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA A
77582725 AAACCTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
ATAAA
Found at i:77583508 original size:32 final size:32
Alignment explanation
Indices: 77583472--77583571 Score: 77
Period size: 32 Copynumber: 3.2 Consensus size: 32
77583462 CTTTTGGCCA
77583472 AAATGGTTTGGATATGTTTATATGCTTGCCTT
1 AAATGGTTTGGATATGTTTATATGCTTGCCTT
* * *
77583504 AAATGTGATTAAATGG-TAAG-TTA-A--ATTGCC-A
1 AAATG-G-TT---TGGATATGTTTATATGCTTGCCTT
*
77583535 AAATGGTTTGGATATGTTTATATGCTTACCTT
1 AAATGGTTTGGATATGTTTATATGCTTGCCTT
77583567 AAATG
1 AAATG
77583572 TGATTAAATG
Statistics
Matches: 50, Mismatches: 7, Indels: 22
0.63 0.09 0.28
Matches are distributed among these distances:
26 3 0.06
27 3 0.06
28 3 0.06
29 3 0.06
30 1 0.02
31 9 0.18
32 15 0.30
33 1 0.02
34 3 0.06
35 3 0.06
36 3 0.06
37 3 0.06
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (32 bp):
AAATGGTTTGGATATGTTTATATGCTTGCCTT
Found at i:77583545 original size:63 final size:63
Alignment explanation
Indices: 77583468--77583593 Score: 243
Period size: 63 Copynumber: 2.0 Consensus size: 63
77583458 TAGGCTTTTG
*
77583468 GCCAAAATGGTTTGGATATGTTTATATGCTTGCCTTAAATGTGATTAAATGGTAAGTTAAATT
1 GCCAAAATGGTTTGGATATGTTTATATGCTTACCTTAAATGTGATTAAATGGTAAGTTAAATT
77583531 GCCAAAATGGTTTGGATATGTTTATATGCTTACCTTAAATGTGATTAAATGGTAAGTTAAATT
1 GCCAAAATGGTTTGGATATGTTTATATGCTTACCTTAAATGTGATTAAATGGTAAGTTAAATT
77583594 ATGTATTATA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.40
Consensus pattern (63 bp):
GCCAAAATGGTTTGGATATGTTTATATGCTTACCTTAAATGTGATTAAATGGTAAGTTAAATT
Found at i:77588205 original size:20 final size:20
Alignment explanation
Indices: 77588177--77588233 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
77588167 AAGATTATGA
*
77588177 ACCACTCCATTTACTTACTT
1 ACCATTCCATTTACTTACTT
77588197 ACCATTCCATTTACTTACTT
1 ACCATTCCATTTACTTACTT
* **
77588217 TCCATTTTATTTACTTA
1 ACCATTCCATTTACTTA
77588234 GCATAAACTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.25, C:0.28, G:0.00, T:0.47
Consensus pattern (20 bp):
ACCATTCCATTTACTTACTT
Found at i:77588219 original size:15 final size:16
Alignment explanation
Indices: 77588191--77588223 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
77588181 CTCCATTTAC
77588191 TTACTTACCATTCCAT
1 TTACTTACCATTCCAT
*
77588207 TTACTTA-CTTTCCAT
1 TTACTTACCATTCCAT
77588222 TT
1 TT
77588224 TATTTACTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.21, C:0.27, G:0.00, T:0.52
Consensus pattern (16 bp):
TTACTTACCATTCCAT
Found at i:77589135 original size:5 final size:5
Alignment explanation
Indices: 77589125--77589152 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
77589115 AATAATTAAG
77589125 TATAT TATAT TATAT TATAT TATAT TAT
1 TATAT TATAT TATAT TATAT TATAT TAT
77589153 TATACATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:77589227 original size:31 final size:30
Alignment explanation
Indices: 77589192--77589252 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
77589182 GAAACAGAAT
* *
77589192 GAAAGCAAACGAAA-TAGAGAAGAACAGGGGA
1 GAAAG-AAACGAAAGAAGA-AAGAAAAGGGGA
*
77589223 GAAAGAAAGGAAAGAAGAAAGAAAAGGGGA
1 GAAAGAAACGAAAGAAGAAAGAAAAGGGGA
77589253 AATAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.59, C:0.05, G:0.34, T:0.02
Consensus pattern (30 bp):
GAAAGAAACGAAAGAAGAAAGAAAAGGGGA
Found at i:77590827 original size:39 final size:40
Alignment explanation
Indices: 77590716--77590830 Score: 128
Period size: 38 Copynumber: 2.9 Consensus size: 40
77590706 CTTCGACCTC
*
77590716 GAGTCGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATA
1 GAGTCGATGAGACACTGGGTGTCAAC--TATTACTTCGGATA
* ** ** *
77590757 GATTCGATGAGGTACTGGGTACCAACT-TTACTTCGGCTA
1 GAGTCGATGAGACACTGGGTGTCAACTATTACTTCGGATA
77590796 G-GTCGATGAGACACTGGGTGTCAACTATTACTTCG
1 GAGTCGATGAGACACTGGGTGTCAACTATTACTTCG
77590831 AACTATCCAA
Statistics
Matches: 60, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
38 20 0.33
39 19 0.32
40 1 0.02
41 18 0.30
42 2 0.03
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.30
Consensus pattern (40 bp):
GAGTCGATGAGACACTGGGTGTCAACTATTACTTCGGATA
Found at i:77595356 original size:20 final size:20
Alignment explanation
Indices: 77595288--77595356 Score: 67
Period size: 20 Copynumber: 3.5 Consensus size: 20
77595278 TTCAACTATG
*
77595288 ATTAAACTTAATCACTTTAAT
1 ATTAAA-TTAATCACATTAAT
77595309 ATTAAATT--T-A-ATTTAAT
1 ATTAAATTAATCACA-TTAAT
77595326 ATTAAGA-TAATCACATTAAT
1 ATTAA-ATTAATCACATTAAT
77595346 ATTAAATTAAT
1 ATTAAATTAAT
77595357 AAAAAAATAT
Statistics
Matches: 40, Mismatches: 1, Indels: 15
0.71 0.02 0.27
Matches are distributed among these distances:
17 12 0.30
18 2 0.05
19 2 0.05
20 17 0.43
21 7 0.17
ACGTcount: A:0.48, C:0.07, G:0.01, T:0.43
Consensus pattern (20 bp):
ATTAAATTAATCACATTAAT
Found at i:77598001 original size:21 final size:21
Alignment explanation
Indices: 77597974--77598032 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
77597964 AAAAATAATG
*
77597974 GTAGTGGTGAGATTAGTTACT
1 GTAGTGGTGAGATTAGATACT
*
77597995 TTAGTGGTGAGATTAGATACT
1 GTAGTGGTGAGATTAGATACT
* *
77598016 GTAGCGATGAGATTAGA
1 GTAGTGGTGAGATTAGA
77598033 AATAGCGGTG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.29, C:0.05, G:0.32, T:0.34
Consensus pattern (21 bp):
GTAGTGGTGAGATTAGATACT
Found at i:77598172 original size:18 final size:18
Alignment explanation
Indices: 77598136--77598178 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
77598126 TTATAATAAA
*
77598136 ATAAATAATTAAATTTAT
1 ATAAATAATTAAATATAT
77598154 ATAAAT-ATTAAATA-AT
1 ATAAATAATTAAATATAT
77598170 ATAACATAA
1 ATAA-ATAA
77598179 AATAAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 6 0.27
17 9 0.41
18 7 0.32
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (18 bp):
ATAAATAATTAAATATAT
Found at i:77598895 original size:17 final size:17
Alignment explanation
Indices: 77598873--77598928 Score: 53
Period size: 16 Copynumber: 3.3 Consensus size: 17
77598863 AAAAATATGA
77598873 AAAAAAATTAAAATATT
1 AAAAAAATTAAAATATT
*
77598890 -AAAAAATT-CAATATTT
1 AAAAAAATTAAAATA-TT
* *
77598906 TAAAAAATAAAAATATAT
1 AAAAAAATTAAAATAT-T
77598924 AAAAA
1 AAAAA
77598929 TTTAATTTAG
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
15 4 0.13
16 10 0.32
17 8 0.26
18 9 0.29
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAAAAATTAAAATATT
Found at i:77598902 original size:15 final size:16
Alignment explanation
Indices: 77598874--77598933 Score: 66
Period size: 17 Copynumber: 3.6 Consensus size: 16
77598864 AAAATATGAA
77598874 AAAAAATTAAAATATT
1 AAAAAATTAAAATATT
* *
77598890 AAAAAATTCAATATTTT
1 AAAAAATT-AAAATATT
*
77598907 AAAAAATAAAAATATAT
1 AAAAAATTAAAATAT-T
*
77598924 AAAAATTTAA
1 AAAAAATTAA
77598934 TTTAGATTTG
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
16 13 0.37
17 22 0.63
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.32
Consensus pattern (16 bp):
AAAAAATTAAAATATT
Found at i:77605566 original size:17 final size:17
Alignment explanation
Indices: 77605540--77605598 Score: 70
Period size: 17 Copynumber: 3.6 Consensus size: 17
77605530 TGACATGCCA
*
77605540 ATAAATAATTTTAAAAT
1 ATAAAAAATTTTAAAAT
77605557 ATAAAAAATTTTAAGAA-
1 ATAAAAAATTTTAA-AAT
*
77605574 ATAAAAAA-TTAAAAAT
1 ATAAAAAATTTTAAAAT
77605590 -TAAAAAATT
1 ATAAAAAATT
77605599 ATGAAAATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
15 9 0.24
16 5 0.14
17 21 0.57
18 2 0.05
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (17 bp):
ATAAAAAATTTTAAAAT
Found at i:77605585 original size:15 final size:15
Alignment explanation
Indices: 77605557--77605604 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
77605547 ATTTTAAAAT
77605557 ATAAAAAATTTTAAGAA
1 ATAAAAAA--TTAAGAA
77605574 ATAAAAAATTAA-AA
1 ATAAAAAATTAAGAA
*
77605588 ATTAAAAAATTATGAA
1 A-TAAAAAATTAAGAA
77605604 A
1 A
77605605 ATTTCATAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
14 3 0.11
15 14 0.50
16 3 0.11
17 8 0.29
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (15 bp):
ATAAAAAATTAAGAA
Found at i:77605588 original size:8 final size:8
Alignment explanation
Indices: 77605552--77605629 Score: 52
Period size: 10 Copynumber: 9.0 Consensus size: 8
77605542 AAATAATTTT
77605552 AAAATATAA
1 AAAAT-TAA
77605561 AAAATTTTAA
1 AAAA--TTAA
*
77605571 GAAA-TAA
1 AAAATTAA
77605578 AAAATT-A
1 AAAATTAA
77605585 AAAATTAA
1 AAAATTAA
77605593 AAAATTATGA
1 AAAATTA--A
*
77605603 AAATTTCATA
1 AAAATT-A-A
77605613 AAAATTTAA
1 AAAA-TTAA
77605622 AAAATTAA
1 AAAATTAA
77605630 CATAAAATTG
Statistics
Matches: 56, Mismatches: 5, Indels: 17
0.72 0.06 0.22
Matches are distributed among these distances:
7 13 0.23
8 13 0.23
9 9 0.16
10 17 0.30
11 4 0.07
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.29
Consensus pattern (8 bp):
AAAATTAA
Found at i:77605605 original size:17 final size:16
Alignment explanation
Indices: 77605541--77605607 Score: 64
Period size: 17 Copynumber: 4.1 Consensus size: 16
77605531 GACATGCCAA
* *
77605541 TAAATAATTTTAAAAT
1 TAAAAAATTATAAAAT
* *
77605557 ATAAAAAATTTTAAGAAA
1 -TAAAAAATTATAA-AAT
77605575 TAAAAAATTA-AAAAT
1 TAAAAAATTATAAAAT
77605590 TAAAAAATTATGAAAAT
1 TAAAAAATTAT-AAAAT
77605607 T
1 T
77605608 TCATAAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
15 12 0.28
16 2 0.05
17 27 0.63
18 2 0.05
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (16 bp):
TAAAAAATTATAAAAT
Found at i:77608537 original size:50 final size:50
Alignment explanation
Indices: 77608413--77608661 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
77608403 GATAATAACA
* * ** * *
77608413 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
77608464 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
77608514 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
77608564 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
77608619 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
77608662 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:77608591 original size:100 final size:104
Alignment explanation
Indices: 77608412--77608661 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
77608402 TGATAATAAC
**
77608412 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
77608477 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
77608514 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
77608577 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
77608619 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
77608662 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:77608777 original size:13 final size:13
Alignment explanation
Indices: 77608756--77608787 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
77608746 GCTTGGATCA
*
77608756 TCATCAAATAAAT
1 TCATAAAATAAAT
77608769 TCATAAAATAAAT
1 TCATAAAATAAAT
77608782 TCATAA
1 TCATAA
77608788 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:77609034 original size:30 final size:30
Alignment explanation
Indices: 77608999--77609056 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
77608989 CCTCGACTCT
*
77608999 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
77609029 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
77609057 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Done.