Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 239 of 290
Found at i:77854570 original size:31 final size:30
Alignment explanation
Indices: 77854527--77854585 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 30
77854517 ATAAAAAAGT
*
77854527 AAAAAAAAAGAAATATGAAAATAAAAGGAA
1 AAAAAAAAAGAAATATGAAAAAAAAAGGAA
77854557 AAAAACAAAAGAAATATGAAAAAAAAAGG
1 AAAAA-AAAAGAAATATGAAAAAAAAAGG
77854586 TGGAAAGTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 5 0.19
31 22 0.81
ACGTcount: A:0.76, C:0.02, G:0.14, T:0.08
Consensus pattern (30 bp):
AAAAAAAAAGAAATATGAAAAAAAAAGGAA
Found at i:77855384 original size:7 final size:7
Alignment explanation
Indices: 77855372--77855400 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
77855362 AATAAACTTG
77855372 CCCCATT
1 CCCCATT
77855379 CCCCATT
1 CCCCATT
77855386 CCCCATT
1 CCCCATT
77855393 CCCCATT
1 CCCCATT
77855400 C
1 C
77855401 GCTCAATCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.59, G:0.00, T:0.28
Consensus pattern (7 bp):
CCCCATT
Found at i:77865123 original size:5 final size:5
Alignment explanation
Indices: 77865113--77865137 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
77865103 AATATTTTTG
77865113 TTTAA TTTAA TTTAA TTTAA TTTAA
1 TTTAA TTTAA TTTAA TTTAA TTTAA
77865138 AATTCAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TTTAA
Found at i:77866431 original size:25 final size:25
Alignment explanation
Indices: 77866374--77866442 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 25
77866364 AAATAATTCT
*
77866374 ATTTTAAAATATTAAAATTTAATAA
1 ATTTTTAAATATTAAAATTTAATAA
*** * *
77866399 AAAATTAAATATTAATATTTAATAC
1 ATTTTTAAATATTAAAATTTAATAA
*
77866424 ATTTTTAATATATTTAAAT
1 ATTTTTAA-ATATTAAAAT
77866443 CTCATAATTT
Statistics
Matches: 32, Mismatches: 11, Indels: 1
0.73 0.25 0.02
Matches are distributed among these distances:
25 24 0.75
26 8 0.25
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.46
Consensus pattern (25 bp):
ATTTTTAAATATTAAAATTTAATAA
Found at i:77868950 original size:48 final size:46
Alignment explanation
Indices: 77868716--77869070 Score: 233
Period size: 47 Copynumber: 7.6 Consensus size: 46
77868706 CTGCCAATGC
* * *
77868716 CATGTCCCAGACATGATCTTACACTAGCTCTCATATACGTAT-GCTGATG
1 CATGTCCCAGACATG-TCTTACACTGGCTATC--ATA-GTATGGCCGATG
* * * *
77868765 CATGTCCCAGACATGTCTTACACTAGC-A-CA-ACTTTTAGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTATCATA-GTATGGCCGATG
* * * * *
77868809 CGTGTCCTAGACACGTCTTACAATGGCTATC-TCTGTCGA-GGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTATCAT-AGT--ATGGCCGATG
* * *
77868856 TATGTCCCAGACATGTCTTACACTGGC-ACTCAT-CTCTGTGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTA-TCATAGTATG-GCCGATG
*
77868902 CCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTATCATAGTATGGCCGATG
* ** * * *
77868950 CATGTCCCAGACATGTCTTACACTAGCCCTCGTCTGGAT-GCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTATCAT-AGTATGGCCGATG
* * * * * * *
77868996 CCATGTCCCAAACATGGTCTTACATTGGCTCTCGTAATGTGGCCGAAG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTATCATAGTATGGCCGATG
* *
77869044 CATGTCCCAAACATTTCTTACACTGGC
1 CATGTCCCAGACATGTCTTACACTGGC
77869071 ACACAAATCA
Statistics
Matches: 245, Mismatches: 42, Indels: 41
0.75 0.13 0.12
Matches are distributed among these distances:
43 4 0.02
44 29 0.12
45 2 0.01
46 44 0.18
47 89 0.36
48 58 0.24
49 19 0.08
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTATCATAGTATGGCCGATG
Found at i:77868963 original size:94 final size:93
Alignment explanation
Indices: 77868707--77869072 Score: 350
Period size: 94 Copynumber: 3.9 Consensus size: 93
77868697 TGGGATATAC
* * * * *
77868707 TGCCAATGCCATGTCCCAGACATGATCTTACACTAGCTCTCATATACGTAT-GCTGATGCATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATC--ATA-GTATGGCCGATGCATGTC
* *
77868771 CCAGACATGTCTTACACTAGCA--CAACTTT
63 CCAGACATGTCTTACACTAGCACTCATCTTG
* * * * * *
77868800 TAGCCGATG-CGTGTCCTAGACA-CGTCTTACAATGGCTATC-TCTGTCGA-GGCCGATGTATGT
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGT--ATGGCCGATGCATGT
*
77868861 CCCAGACATGTCTTACACTGGCACTCATCTCTG
62 CCCAGACATGTCTTACACTAGCACTCATCT-TG
*
77868894 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCA
* * *
77868959 GACATGTCTTACACTAGCCCTCGTCTGG
66 GACATGTCTTACACTAGCACTCATCTTG
* * * * * * *
77868987 ATGCCGATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCGTAATGTGGCCGAAGCATGTCCC
1 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCC
* * *
77869052 AAACATTTCTTACACTGGCAC
65 AGACATGTCTTACACTAGCAC
77869073 ACAAATCACC
Statistics
Matches: 223, Mismatches: 37, Indels: 25
0.78 0.13 0.09
Matches are distributed among these distances:
89 3 0.01
91 33 0.15
92 13 0.06
93 25 0.11
94 130 0.58
95 18 0.08
96 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (93 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCA
GACATGTCTTACACTAGCACTCATCTTG
Found at i:77873211 original size:8 final size:8
Alignment explanation
Indices: 77873191--77873221 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
77873181 AAAATAGAAT
77873191 AAATAAT-
1 AAATAATA
77873198 AAATAATA
1 AAATAATA
77873206 AAATAATA
1 AAATAATA
77873214 AAATAATA
1 AAATAATA
77873222 GGATAGAGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 7 0.30
8 16 0.70
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (8 bp):
AAATAATA
Found at i:77878042 original size:30 final size:30
Alignment explanation
Indices: 77878008--77878079 Score: 101
Period size: 30 Copynumber: 2.4 Consensus size: 30
77877998 GCCATGACAA
77878008 ACGGGCATGTGGCCTGC-CTGTATGTCTCAC
1 ACGGGCATGTGGCCTGCTC-GTATGTCTCAC
* *
77878038 ACGGGCCTGTGGCTTGCTCGTATGTCTCAC
1 ACGGGCATGTGGCCTGCTCGTATGTCTCAC
*
77878068 ACGGGCGTGTGG
1 ACGGGCATGTGG
77878080 TTTAGCCGTG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
30 37 0.97
31 1 0.03
ACGTcount: A:0.11, C:0.28, G:0.35, T:0.26
Consensus pattern (30 bp):
ACGGGCATGTGGCCTGCTCGTATGTCTCAC
Found at i:77878804 original size:174 final size:174
Alignment explanation
Indices: 77878501--77878814 Score: 432
Period size: 174 Copynumber: 1.8 Consensus size: 174
77878491 GGGTTACCAG
* * * *
77878501 AGTCCAACTATAGCCTTACACCTTATATTCCCCGTGTTTATTGTCCTAGTGGACTACTAGGATAC
1 AGTCCAACTATAGCCTTACACCGTATATTCCCCGTGTTTACTGTCCGAGTAGACTACTAGGATAC
* * * * *
77878566 CATAACATCTTCCAACTATGGTTTTAGTCCTCTCTACCATGATTCTATGGCATCTTTTAGCCATG
66 CATAACATCTTCCAACTATGGTCTTAGTCCTCTCTACCATGACTCCATAGCATCTTTCAGCCATG
77878631 ATCTTACTCAATTTAGTTATAGTCCTGTCCACCTGGGTTGTCAT
131 ATCTTACTCAATTTAGTTATAGTCCTGTCCACCTGGGTTGTCAT
* * **
77878675 AGTCCAACTATAGTCTTACACCGTATATTTCTTGTGTTTACTGTCTCGA-TAGACTACTAGGATA
1 AGTCCAACTATAGCCTTACACCGTATATTCCCCGTGTTTACTGTC-CGAGTAGACTACTAGGATA
*** * * *
77878739 CCATAGTGTCTTTCAACTATGGTCTTAGTCCTGTCTACCATGACTCCATAGCTTCTTTCAGCCAT
65 CCATAACATCTTCCAACTATGGTCTTAGTCCTCTCTACCATGACTCCATAGCATCTTTCAGCCAT
*
77878804 GGTCTTACTCA
130 GATCTTACTCA
77878815 TTTCAGTCAT
Statistics
Matches: 119, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
174 117 0.98
175 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (174 bp):
AGTCCAACTATAGCCTTACACCGTATATTCCCCGTGTTTACTGTCCGAGTAGACTACTAGGATAC
CATAACATCTTCCAACTATGGTCTTAGTCCTCTCTACCATGACTCCATAGCATCTTTCAGCCATG
ATCTTACTCAATTTAGTTATAGTCCTGTCCACCTGGGTTGTCAT
Found at i:77878806 original size:45 final size:45
Alignment explanation
Indices: 77878739--77878877 Score: 131
Period size: 45 Copynumber: 3.1 Consensus size: 45
77878729 TACTAGGATA
* *
77878739 CCATAG-TGTCTTTCAACTATGGTCTTAGTCCTGTCTACCATGACT-
1 CCATAGCT-TCTTTCAGCTATGGTCTTAGTCCTATCTACCATGA-TG
* * * * *
77878784 CCATAGCTTCTTTCAGCCATGGTCTTACTCATTTC-AGTCATGATG
1 CCATAGCTTCTTTCAGCTATGGTCTTAGTCCTATCTA-CCATGATG
* * * *
77878829 CCATAGCATCTTTTAGCTATGGTATTAGTCCTATCTACCATAATG
1 CCATAGCTTCTTTCAGCTATGGTCTTAGTCCTATCTACCATGATG
77878874 CCAT
1 CCAT
77878878 GAGGTATTTC
Statistics
Matches: 75, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
44 2 0.03
45 71 0.95
46 2 0.03
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.37
Consensus pattern (45 bp):
CCATAGCTTCTTTCAGCTATGGTCTTAGTCCTATCTACCATGATG
Found at i:77878857 original size:90 final size:91
Alignment explanation
Indices: 77878747--77878942 Score: 245
Period size: 90 Copynumber: 2.2 Consensus size: 91
77878737 TACCATAGTG
* * * * * * **
77878747 TCTTTCAACTATGGTCTTAGTCCTGTCTACCATGACT-CCAT-AGCTTCTTTCAGCCATGGTC-T
1 TCTTTCAGCTATGGTATTAGTCCTATCTACCAT-AATGCCATGAG-GTATTTCAGCCACAGTCTT
77878809 TACTCATTTCAGTCATGATGCCATAGCA
64 TACTCATTTCAGTCATGATGCCATAGCA
*
77878837 TCTTTTAGCTATGGTATTAGTCCTATCTACCATAATGCCATGAGGTATTTCAGCCACAGTCTTTA
1 TCTTTCAGCTATGGTATTAGTCCTATCTACCATAATGCCATGAGGTATTTCAGCCACAGTCTTTA
* * *
77878902 CTCATTTTAGTCATGATGTCATATCA
66 CTCATTTCAGTCATGATGCCATAGCA
77878928 TCTTTCAGCTATGGT
1 TCTTTCAGCTATGGT
77878943 CTTACTCATT
Statistics
Matches: 90, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
89 2 0.02
90 46 0.51
91 42 0.47
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (91 bp):
TCTTTCAGCTATGGTATTAGTCCTATCTACCATAATGCCATGAGGTATTTCAGCCACAGTCTTTA
CTCATTTCAGTCATGATGCCATAGCA
Found at i:77878955 original size:45 final size:44
Alignment explanation
Indices: 77878792--77878955 Score: 132
Period size: 45 Copynumber: 3.6 Consensus size: 44
77878782 CTCCATAGCT
*
77878792 TCTTTCAGCCATGGTCTTACTCATTTCAGTCATGATGCCATAGCA
1 TCTTTCAGCCATGGTCTTACTCATTTTAGTCATGATGCCATA-CA
* * * * * * * * **
77878837 TCTTTTAGCTATGGTATTAGTCCTATCTA-CCATAATGCCATGAGG
1 TCTTTCAGCCATGGTCTTACTCAT-TTTAGTCATGATGCCAT-ACA
* ** *
77878882 TATTTCAGCCACAGTCTTTACTCATTTTAGTCATGATGTCATATCA
1 TCTTTCAGCCATGGTC-TTACTCATTTTAGTCATGATGCCATA-CA
*
77878928 TCTTTCAGCTATGGTCTTACTCATTTTA
1 TCTTTCAGCCATGGTCTTACTCATTTTA
77878956 TAGCTTATAG
Statistics
Matches: 85, Mismatches: 29, Indels: 10
0.69 0.23 0.08
Matches are distributed among these distances:
45 55 0.65
46 30 0.35
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (44 bp):
TCTTTCAGCCATGGTCTTACTCATTTTAGTCATGATGCCATACA
Found at i:77883364 original size:21 final size:21
Alignment explanation
Indices: 77883340--77883383 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
77883330 CACGCCCATA
*
77883340 TGGAGGCCACACATGCTCGTG
1 TGGAGGCCACACATGCCCGTG
**
77883361 TGGAGGGGACACATGCCCGTG
1 TGGAGGCCACACATGCCCGTG
77883382 TG
1 TG
77883384 AGTAGCTCGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.18, C:0.25, G:0.39, T:0.18
Consensus pattern (21 bp):
TGGAGGCCACACATGCCCGTG
Found at i:77903465 original size:18 final size:18
Alignment explanation
Indices: 77903442--77903479 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
77903432 TTTAAAGGTG
77903442 TATGGTAAGTATATTTTC
1 TATGGTAAGTATATTTTC
77903460 TATGGTAAGTATATTTTC
1 TATGGTAAGTATATTTTC
77903478 TA
1 TA
77903480 ACTATGTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.05, G:0.16, T:0.50
Consensus pattern (18 bp):
TATGGTAAGTATATTTTC
Found at i:77906010 original size:17 final size:18
Alignment explanation
Indices: 77905983--77906028 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
77905973 AACCTTTCCA
77905983 TTTCC-TTTTCTTTC-TT
1 TTTCCTTTTTCTTTCGTT
77905999 TTTCCTTTTTC--TCGTT
1 TTTCCTTTTTCTTTCGTT
77906015 TTTCTCTTTTTCTT
1 TTTC-CTTTTTCTT
77906029 CTTCCTCAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
15 2 0.08
16 11 0.44
17 12 0.48
ACGTcount: A:0.00, C:0.24, G:0.02, T:0.74
Consensus pattern (18 bp):
TTTCCTTTTTCTTTCGTT
Found at i:77906016 original size:16 final size:15
Alignment explanation
Indices: 77905983--77906027 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 15
77905973 AACCTTTCCA
*
77905983 TTTCCTTTTCTTTCTT
1 TTTCCTTTT-TCTCTT
77905999 TTTCCTTTTTCTCGTT
1 TTTCCTTTTTCTC-TT
77906015 TTTCTCTTTTTCT
1 TTTC-CTTTTTCT
77906028 TCTTCCTCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 3 0.12
16 15 0.58
17 8 0.31
ACGTcount: A:0.00, C:0.24, G:0.02, T:0.73
Consensus pattern (15 bp):
TTTCCTTTTTCTCTT
Found at i:77906031 original size:9 final size:8
Alignment explanation
Indices: 77905995--77906027 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
77905985 TCCTTTTCTT
77905995 TCTTTTTC
1 TCTTTTTC
77906003 -CTTTTTC
1 TCTTTTTC
77906010 TCGTTTTTC
1 TC-TTTTTC
77906019 TCTTTTTC
1 TCTTTTTC
77906027 T
1 T
77906028 TCTTCCTCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 7 0.30
8 8 0.35
9 8 0.35
ACGTcount: A:0.00, C:0.24, G:0.03, T:0.73
Consensus pattern (8 bp):
TCTTTTTC
Found at i:77907712 original size:70 final size:69
Alignment explanation
Indices: 77907597--77907896 Score: 298
Period size: 70 Copynumber: 4.3 Consensus size: 69
77907587 AGAAGTGTGG
* * * * *
77907597 GCTCATGCTAATTGTTTTGGAGGCTGTGGTATTGAACCTGCTAGCCTTAAAATTACAGTTGGGAG
1 GCTCGTGCTAACTATTTTGG-GGCTGCGATATTGAACCTGCTAGCCTTAAAATTACAGTTGGGAG
77907662 CTTGA
65 CTTGA
* ** * ** * * *
77907667 GCTCGTGCTAACTATTTTGGGCGATGAAATATTAAACCTATTAGCCTTAAACTTACAATTGGGAA
1 GCTCGTGCTAACTATTTTGGG-GCTGCGATATTGAACCTGCTAGCCTTAAAATTACAGTTGGGAG
*
77907732 CTTAA
65 CTTGA
* ** * * * *
77907737 GCTTGCACTAACTATTTCGGGGCTGCGATATTGAACTTGCTATCCTTAAAATTATAGTTGGGAGC
1 GCTCGTGCTAACTATTTTGGGGCTGCGATATTGAACCTGCTAGCCTTAAAATTACAGTTGGGAGC
77907802 TTGA
66 TTGA
* * *
77907806 GCTCATGCTAACTAATTTGGGGGCTGCGCTATTGAA-CTGGCTAGCCTTAAAATTACAGTTGGGA
1 GCTCGTGCTAACT-ATTTTGGGGCTGCGATATTGAACCT-GCTAGCCTTAAAATTACAGTTGGGA
77907870 GCTTGA
64 GCTTGA
* *
77907876 GTTTAG-GCTAACTATTTTGGG
1 G-CTCGTGCTAACTATTTTGGG
77907897 AGGGAATATA
Statistics
Matches: 182, Mismatches: 44, Indels: 9
0.77 0.19 0.04
Matches are distributed among these distances:
69 53 0.29
70 128 0.70
71 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.34
Consensus pattern (69 bp):
GCTCGTGCTAACTATTTTGGGGCTGCGATATTGAACCTGCTAGCCTTAAAATTACAGTTGGGAGC
TTGA
Found at i:77914885 original size:23 final size:22
Alignment explanation
Indices: 77914833--77914886 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
77914823 TGAATATGGT
77914833 ATGAATT-G-TGTATATTGATG
1 ATGAATTGGTTGTATATTGATG
* *
77914853 ATGATTTTGGTTGTTTATTGTATG
1 ATGA-ATTGGTTGTATATTG-ATG
77914877 ATGAATTGGT
1 ATGAATTGGT
77914887 ACCATTTTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
20 4 0.15
21 2 0.07
22 1 0.04
23 13 0.48
24 7 0.26
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (22 bp):
ATGAATTGGTTGTATATTGATG
Found at i:77919271 original size:46 final size:46
Alignment explanation
Indices: 77919126--77919294 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 46
77919116 GTGTGAGCTT
* *
77919126 GTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-TTATGAGAGCCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAT-A-AGCCA
* * * *
77919172 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGT--GCTA
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGA-TA-TAAGCCA
77919220 G-GTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAGCCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAGCCA
* *
77919265 GTGTAAGACGTATCTGGGACATGCATCGGC
1 GTGTAAGACATGTCTGGGACATGCATCGGC
77919295 TATGACATGT
Statistics
Matches: 102, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
43 1 0.01
44 1 0.01
45 17 0.17
46 48 0.47
47 20 0.20
48 12 0.12
49 1 0.01
51 1 0.01
52 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.22
Consensus pattern (46 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAGCCA
Found at i:77919337 original size:46 final size:44
Alignment explanation
Indices: 77919126--77919340 Score: 161
Period size: 46 Copynumber: 4.7 Consensus size: 44
77919116 GTGTGAGCTT
* * * * *
77919126 GTGTAAGACATGTCTGGGACATGCATCGGCCA-CATTATGAGAGCCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCTATGA-CAT--GTGCTA
77919172 GTGTAAGACCATGTCTGGGACATGGCATCGGC-ATTGAGACGA-GTGCTA
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-T--GAC-ATGTGCTA
* ** *
77919220 G-GTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATATAAGCCA
1 GTGTAAGACATGTCTGGGACATGCATCGG-CT--ATGACATGTGCTA
* * *
77919265 GTGTAAGACGTATCTGGGACATGCATCGGCTATGACATGTGTTA
1 GTGTAAGACATGTCTGGGACATGCATCGGCTATGACATGTGCTA
77919309 GTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGC
77919341 ACCTTACCCC
Statistics
Matches: 136, Mismatches: 17, Indels: 32
0.74 0.09 0.17
Matches are distributed among these distances:
43 1 0.01
44 15 0.11
45 27 0.20
46 56 0.41
47 21 0.15
48 13 0.10
49 1 0.01
51 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (44 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCTATGACATGTGCTA
Found at i:77920501 original size:20 final size:21
Alignment explanation
Indices: 77920463--77920501 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
77920453 TCAAAATGGT
77920463 CACACAAGCGTGTTGCCCTTC
1 CACACAAGCGTGTTGCCCTTC
*
77920484 CACACAGGCGTG-TGCCCT
1 CACACAAGCGTGTTGCCCT
77920502 GTTTCAAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.18, C:0.38, G:0.23, T:0.21
Consensus pattern (21 bp):
CACACAAGCGTGTTGCCCTTC
Found at i:77925512 original size:23 final size:21
Alignment explanation
Indices: 77925466--77925509 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
77925456 CCAAATATCG
77925466 ATGCTTAAATATATGAGTTAT
1 ATGCTTAAATATATGAGTTAT
77925487 ATGCTTAAATATATGAGTTAT
1 ATGCTTAAATATATGAGTTAT
77925508 AT
1 AT
77925510 ATGATAAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.05, G:0.14, T:0.43
Consensus pattern (21 bp):
ATGCTTAAATATATGAGTTAT
Found at i:77929253 original size:20 final size:21
Alignment explanation
Indices: 77929228--77929275 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
77929218 ATATTATCAT
* *
77929228 TATTCATG-ATTTGACTCCAC
1 TATTCATGTACTTGACGCCAC
77929248 TATTCATGTACTTGACGCCAC
1 TATTCATGTACTTGACGCCAC
77929269 TATTCAT
1 TATTCAT
77929276 AGGACTGACA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.25, C:0.25, G:0.10, T:0.40
Consensus pattern (21 bp):
TATTCATGTACTTGACGCCAC
Found at i:77929284 original size:21 final size:21
Alignment explanation
Indices: 77929228--77929281 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
77929218 ATATTATCAT
* *
77929228 TATTCAT-GATTTGACTCCAC
1 TATTCATGGACTTGACGCCAC
*
77929248 TATTCATGTACTTGACGCCAC
1 TATTCATGGACTTGACGCCAC
77929269 TATTCATAGGACT
1 TATTCAT-GGACT
77929282 GACATTCTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 7 0.25
21 17 0.61
22 4 0.14
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (21 bp):
TATTCATGGACTTGACGCCAC
Found at i:77931226 original size:16 final size:16
Alignment explanation
Indices: 77931205--77931236 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
77931195 GTTTGCTCTT
77931205 TGATCTAATGTAAAGG
1 TGATCTAATGTAAAGG
77931221 TGATCTAATGTAAAGG
1 TGATCTAATGTAAAGG
77931237 AATTAATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.25, T:0.31
Consensus pattern (16 bp):
TGATCTAATGTAAAGG
Found at i:77934299 original size:4 final size:4
Alignment explanation
Indices: 77934290--77934341 Score: 65
Period size: 4 Copynumber: 13.5 Consensus size: 4
77934280 ATAGAAAGGT
*
77934290 AATA AATA AATA AATA AAT- AAT- AATA AAGGA AA-A AATA AATA AATA
1 AATA AATA AATA AATA AATA AATA AATA AA-TA AATA AATA AATA AATA
77934336 AATA AA
1 AATA AA
77934342 GATGCACAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
3 9 0.20
4 32 0.73
5 3 0.07
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.21
Consensus pattern (4 bp):
AATA
Found at i:77935969 original size:89 final size:89
Alignment explanation
Indices: 77935814--77936527 Score: 501
Period size: 89 Copynumber: 8.0 Consensus size: 89
77935804 GGAATTGCTG
* * * * * * * * *
77935814 CTTCAATCTGCCCCACTACAACTTCAGGGAGATAAGGTTTATAGCTGT-AATCTACTCTACTCCA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTA-CTTTCAATCTGCTCCACTGCA
*
77935878 ACTTCAGAGAGATAAGATTTGCTAT
65 ACTTCAGGGAGATAAGATTTGCTAT
* * * * *
77935903 CTTCAATCTACTCCATTGTAACTTCAGGGAGATTAGACTTGTAGCTAT-AATCTGCTCCACTGCA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTA-CTTTCAATCTGCTCCACTGCA
* * *
77935967 ACTTCAGGGAGATGAGACTCG-TAT
65 ACTTCAGGGAGATAAGATTTGCTAT
* * * ** * * * **
77935991 CTCCAATTTGCTCCACTATAATTTTAGGGAGATAAGATTAGTCAC-TTCAGCCTGCTCCACTGCA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGT-ACTTTCAATCTGCTCCACTGCA
* * * *
77936055 ACTCCAGGGAGATAAGGTTT-ATAG
65 ACTTCAGGGAGATAAGATTTGCTAT
* * * * * * * * *
77936079 CTTTAATCTGCTCTACTGCAATTTCAGAGAGACAAGATTTGTTATTTTCAATCTGCACCACCGCA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTG-TACTTTCAATCTGCTCCACTGCA
* *
77936144 AATTCAGGGAGATAGGATTTGCTAT
65 ACTTCAGGGAGATAAGATTTGCTAT
* * * * * * * ** * *
77936169 CTTCAATCTGCTCCACTGGAACTTTAGAGAGATAAGGTTTATAGCTTT-AATTTAATCTACTACA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTA-CTTTCAATCTGCTCCACTGCA
*
77936233 ACTTCAGAGAGATAAGATTTGCTAT
65 ACTTCAGGGAGATAAGATTTGCTAT
* * * * * *
77936258 CTTCAGTCTATTCCACTGCAACTTCAGGGAGATAAGACTTGTAATTTCAACCTGTTCCACTGCAA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTACTTTCAATCTGCTCCACTGCAA
* * * *
77936323 CTTTAGGGAGATAAGGTTT-ATAG
66 CTTCAGGGAGATAAGATTTGCTAT
* * * * ** *
77936346 CTTTAATCTACTCTACTGCAACTTTAGAGAGATAAGATTAACTA-TCTTCAATCTGCTCCACTAC
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATT-TGTACT-TTCAATCTGCTCCACTGC
* * * *
77936410 AACTTCAAGAAGATAAGATTTGTGGTTTGTAG
64 AACTTCAGGGAGATAAGA-TT-T-G---CTAT
* * * *
77936442 CTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTTGCTA-TCTTCAATCTGCTCCACTGC
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTG-TACT-TTCAATCTGCTCCACTGC
*
77936506 AACTTCAAGGAGATAAGATTTG
64 AACTTCAGGGAGATAAGATTTG
77936528 TAACTTGTAG
Statistics
Matches: 485, Mismatches: 122, Indels: 32
0.76 0.19 0.05
Matches are distributed among these distances:
87 1 0.00
88 137 0.28
89 226 0.47
90 40 0.08
91 1 0.00
93 1 0.00
94 1 0.00
95 2 0.00
96 76 0.16
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (89 bp):
CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTACTTTCAATCTGCTCCACTGCAA
CTTCAGGGAGATAAGATTTGCTAT
Found at i:77936461 original size:96 final size:96
Alignment explanation
Indices: 77936337--77936595 Score: 356
Period size: 96 Copynumber: 2.7 Consensus size: 96
77936327 AGGGAGATAA
* * * * *
77936337 GGTTTATAGCTTTAATCTACTCTACTGCAACTTTAGAGAGATAAGATTAACTATCTTCAATCTGC
1 GGTTTGTAGCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTAACTATCTTCAATCTGC
77936402 TCCACTACAACTTCAAGAAGATAAGATTTGT
66 TCCACTACAACTTCAAGAAGATAAGATTTGT
**
77936433 GGTTTGTAGCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTTGCTATCTTCAATCTGC
1 GGTTTGTAGCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTAACTATCTTCAATCTGC
* *
77936498 TCCACTGCAACTTCAAGGAGATAAGATTTGT
66 TCCACTACAACTTCAAGAAGATAAGATTTGT
*** * * * * * *
77936529 AACTTGTAGCTTTAATCTGTTCCACTGCAACCTCAGGGAAATGAGATTCATTATCTTCAATCTGC
1 GGTTTGTAGCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTAACTATCTTCAATCTGC
77936594 TC
66 TC
77936596 TATTGTAAGT
Statistics
Matches: 144, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
96 144 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (96 bp):
GGTTTGTAGCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTAACTATCTTCAATCTGC
TCCACTACAACTTCAAGAAGATAAGATTTGT
Found at i:77936477 original size:51 final size:49
Alignment explanation
Indices: 77936395--77936576 Score: 158
Period size: 51 Copynumber: 3.7 Consensus size: 49
77936385 AACTATCTTC
* * *
77936395 AATCTGCTCCACTACAACTTCA-AGAAGATAAGATTTGTGGTTTGTAGCTTT
1 AATCTGTTCCACTGCAACTTCAGGGAA-ATAAGATTTGT-G-TTGTAGCTTT
* * * * *
77936446 AATCTATTCCACTGCAACTTTAGGGAAATAAGA-TT-TG--CTATCTTC
1 AATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTGTTGTAGCTTT
* * * *
77936491 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTGTAGCTTT
1 AATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGT--GTTGTAGCTTT
* *
77936542 AATCTGTTCCACTGCAACCTCAGGGAAATGAGATT
1 AATCTGTTCCACTGCAACTTCAGGGAAATAAGATT
77936577 CATTATCTTC
Statistics
Matches: 102, Mismatches: 22, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
45 33 0.32
46 2 0.02
47 1 0.01
48 1 0.01
49 1 0.01
50 2 0.02
51 59 0.58
52 3 0.03
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (49 bp):
AATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTGTTGTAGCTTT
Found at i:77936620 original size:96 final size:96
Alignment explanation
Indices: 77936343--77936668 Score: 317
Period size: 96 Copynumber: 3.5 Consensus size: 96
77936333 ATAAGGTTTA
* * * * * * *
77936343 TAGCTTTAATCTACTCTACTGCAACTTTAGAGAGATAAGATTAACTATCTTCAATCTGCTCCACT
1 TAGCTTTAATCTATTCCACTGCAACCTCAGGGAAATAAGATTCACTATCTTCAATCTGCTCCACT
* * * ***
77936408 ACAACTTCAAGAAGATAAGATTTGTGGTTTG
66 GCAACTTCAAGGAGAAAAGATTTGTAACTTG
* * **
77936439 TAGCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTTGCTATCTTCAATCTGCTCCACT
1 TAGCTTTAATCTATTCCACTGCAACCTCAGGGAAATAAGATTCACTATCTTCAATCTGCTCCACT
*
77936504 GCAACTTCAAGGAGATAAGATTTGTAACTTG
66 GCAACTTCAAGGAGAAAAGATTTGTAACTTG
* * * * *
77936535 TAGCTTTAATCTGTTCCACTGCAACCTCAGGGAAATGAGATTCATTATCTTCAATCTGCTCTATT
1 TAGCTTTAATCTATTCCACTGCAACCTCAGGGAAATAAGATTCACTATCTTCAATCTGCTCCACT
* * *
77936600 GTAAGTT-TAGAGAGAAAAGATTTG-----TG
66 GCAACTTCAAG-GAGAAAAGATTTGTAACTTG
* * * *
77936626 -A-CTTTAATCTTTTCCACTACAACTTCAGGGAGATAAGATTCAC
1 TAGCTTTAATCTATTCCACTGCAACCTCAGGGAAATAAGATTCAC
77936669 CATGATAACT
Statistics
Matches: 199, Mismatches: 30, Indels: 9
0.84 0.13 0.04
Matches are distributed among these distances:
89 36 0.18
90 1 0.01
91 2 0.01
95 2 0.01
96 158 0.79
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (96 bp):
TAGCTTTAATCTATTCCACTGCAACCTCAGGGAAATAAGATTCACTATCTTCAATCTGCTCCACT
GCAACTTCAAGGAGAAAAGATTTGTAACTTG
Found at i:77936664 original size:44 final size:44
Alignment explanation
Indices: 77935813--77936947 Score: 557
Period size: 44 Copynumber: 24.9 Consensus size: 44
77935803 AGGAATTGCT
* * * * *
77935813 GCTTCAATCTGCCCCACTACAACTTCAGGGAGATAAGGTTTATA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* * * * *
77935857 GCTGTAATCTACTCTACTCCAACTTCAGAGAGATAAGATTTGCTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TA
* * * * * * *
77935902 TCTTCAATCTACTCCATTGTAACTTCAGGGAGATTAGACTTGTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* * * *
77935946 GCTATAATCTGCTCCACTGCAACTTCAGGGAGATGAGACTCGTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* ** * ** * * *
77935990 TCTCCAATTTGCTCCACTATAATTTTAGGGAGATAAGATTAGTCA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-A
* ** * * *
77936035 -CTTCAGCCTGCTCCACTGCAACTCCAGGGAGATAAGGTTTATA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* * * *
77936078 GCTTTAATCTGCTCTACTGCAATTTCAGAGAGACAAGATTTGTTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TA
* * * * *
77936123 -TTTTCAATCTGCACCACCGCAAATTCAGGGAGATAGGATTTGCTA
1 GCTTT-AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TA
* * * * * * *
77936168 TCTTCAATCTGCTCCACTGGAACTTTAGAGAGATAAGGTTTATA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* ** * * *
77936212 GCTTTAATTTAATCTACTACAACTTCAGAGAGATAAGATTTGCTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TA
* * * ** *
77936257 TCTTCAGTCTATTCCACTGCAACTTCAGGGAGATAAGACTTGTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* * * * * *
77936301 -ATTTCAACCTGTTCCACTGCAACTTTAGGGAGATAAGGTTTATA
1 GCTTT-AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* * * * **
77936345 GCTTTAATCTACTCTACTGCAACTTTAGAGAGATAAGATTAACTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-TGTA
* * * * *
77936390 TCTTCAATCTGCTCCACTACAACTTCAAGAAGATAAGATTTGTGGTTTGTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-------TTTGTA
** * *
77936441 GCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTTGCTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TA
* * *
77936486 TCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTGTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA----T---TTGTA
* * * *
77936537 GCTTTAATCTGTTCCACTGCAACCTCAGGGAAATGAGATTCAT-TA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT--TGTA
* * * * * * * * *
77936582 TCTTCAATCTGCTCTATTGTAAGTTTAGAGAGAAAAGATTTGT-
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
** *
77936625 GACTTTAATCTTTTCCACTACAACTTCAGGGAGATAAGATTCACCATGATA
1 G-CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-----TG-TA
* ** * * * *
77936676 ACTTCGATC--CATCCCACTGTAACTTTAGGG-GTATAGGATTTGTG
1 GCTTTAATCTGC-T-CCACTGCAACTTCAGGGAG-ATAAGATTTGTA
* * *
77936720 GCTTTAATATGCTCCACTGTAACTTCAGGGAAATAAGATTCGCCATGATA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-----TG-TA
* ** * * * *
77936770 ACTTCGATCT-ATCTCACTGTAACTTCAGGG-GTATAGGATTTGTG
1 GCTTTAATCTGCTC-CACTGCAACTTCAGGGAG-ATAAGATTTGTA
77936814 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGATA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-T---T-TG-TA
* ** * * *
77936864 ACTTCGATCTG-TCCCACTACAACTTCAGGG-GTATATGATTTGTG
1 GCTTTAATCTGCT-CCACTGCAACTTCAGGGAG-ATAAGATTTGTA
* * *
77936908 GCTTTAATATGCTCCATTGCAACTTTAGGGAGATAAGATT
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
77936948 CACCATGATA
Statistics
Matches: 806, Mismatches: 223, Indels: 124
0.70 0.19 0.11
Matches are distributed among these distances:
43 4 0.00
44 383 0.48
45 241 0.30
46 5 0.01
47 1 0.00
48 1 0.00
49 14 0.02
50 88 0.11
51 64 0.08
52 5 0.01
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (44 bp):
GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
Found at i:77936725 original size:94 final size:94
Alignment explanation
Indices: 77936618--77937007 Score: 546
Period size: 94 Copynumber: 4.1 Consensus size: 94
77936608 AGAGAGAAAA
* * ** *
77936618 GATTTGTGACTTTAATCTTTTCCACTACAACTTCAGGGAGATAAGATTCACCATGATAACTTCGA
1 GATTTGTGGCTTTAATATGCTCCACTGCAACTTCAGGGAGATAAGATTCACCATGATAACTTCGA
*
77936683 TCCATCCCACTGTAACTTTAGGGGTATAG
66 TCCATCCCACTGTAACTTCAGGGGTATAG
* * *
77936712 GATTTGTGGCTTTAATATGCTCCACTGTAACTTCAGGGAAATAAGATTCGCCATGATAACTTCGA
1 GATTTGTGGCTTTAATATGCTCCACTGCAACTTCAGGGAGATAAGATTCACCATGATAACTTCGA
* *
77936777 TCTATCTCACTGTAACTTCAGGGGTATAG
66 TCCATCCCACTGTAACTTCAGGGGTATAG
* * *
77936806 GATTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGATAACTTCGA
1 GATTTGTGGCTTTAATATGCTCCACTGCAACTTCAGGGAGATAAGATTCACCATGATAACTTCGA
** ** *
77936871 TCTGTCCCACTACAACTTCAGGGGTATAT
66 TCCATCCCACTGTAACTTCAGGGGTATAG
* * *
77936900 GATTTGTGGCTTTAATATGCTCCATTGCAACTTTAGGGAGATAAGATTCACCATGATAACTTTGA
1 GATTTGTGGCTTTAATATGCTCCACTGCAACTTCAGGGAGATAAGATTCACCATGATAACTTCGA
* * * *
77936965 TTCGTCCCACTGTAACTGCAGAGGTATAG
66 TCCATCCCACTGTAACTTCAGGGGTATAG
77936994 GATTTGTGGCTTTA
1 GATTTGTGGCTTTA
77937008 CTGATCTGTT
Statistics
Matches: 263, Mismatches: 33, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
94 263 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (94 bp):
GATTTGTGGCTTTAATATGCTCCACTGCAACTTCAGGGAGATAAGATTCACCATGATAACTTCGA
TCCATCCCACTGTAACTTCAGGGGTATAG
Found at i:77947887 original size:74 final size:74
Alignment explanation
Indices: 77947769--77948026 Score: 308
Period size: 74 Copynumber: 3.5 Consensus size: 74
77947759 GTTTTCCCCG
* * * * *
77947769 AAATCCCTACGTTCTTTTCCCAAATCCCTTTCTTTCTTCCCCAATTTCTTTTCCCCAAATCAATT
1 AAATCCCTAAGCT-TTTTCCCAAATCCCTTCCTTTTTTTCCCAATTTCTTTTCCCCAAATCAATT
77947834 CCCCTCCCTA
65 CCCCTCCCTA
*
77947844 AAATCCCTAAG-TTTTTCCTCTAATCCCTTCCTTTTTTTCCCAATTTCTTTTCCCCAAATCAATT
1 AAATCCCTAAGCTTTTTCC-CAAATCCCTTCCTTTTTTTCCCAATTTCTTTTCCCCAAATCAATT
* *
77947908 ACCCTCCCCA
65 CCCCTCCCTA
* * * * *
77947918 TAATCCCTAAGCTTTTTGCCAAATCCCTTTC-TTTTTTCCCAACTTCTTTTCCCCAAATCAGTTC
1 AAATCCCTAAGCTTTTTCCCAAATCCCTTCCTTTTTTTCCCAATTTCTTTTCCCCAAATCAATTC
* *
77947982 TCCT-CCTCG
66 CCCTCCCT-A
*
77947991 AAATCCCTAA-CTTTTTCCCCAAATCCCCTCCTTTTT
1 AAATCCCTAAGCTTTTT-CCCAAATCCCTTCCTTTTT
77948027 CCCCCAATGT
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
72 8 0.05
73 59 0.38
74 74 0.47
75 16 0.10
ACGTcount: A:0.20, C:0.38, G:0.02, T:0.40
Consensus pattern (74 bp):
AAATCCCTAAGCTTTTTCCCAAATCCCTTCCTTTTTTTCCCAATTTCTTTTCCCCAAATCAATTC
CCCTCCCTA
Found at i:77947987 original size:73 final size:72
Alignment explanation
Indices: 77947763--77948026 Score: 300
Period size: 73 Copynumber: 3.6 Consensus size: 72
77947753 AAATTAGTTT
* * * *
77947763 TCCCCGAAATCCCTACGTTCTTTTCCCAAATCCCTTTCTTTCTTCCCCAATTTCTTTTCCCCAAA
1 TCCCC-AAATCCCTAAGCT-TTTTCCCAAATCCCTTCCTTT-TTTCCCAATTTCTTTTCCCCAAA
*
77947828 TCAATTCCCC
63 TCAATTCTCC
* *
77947838 TCCCTAAAATCCCTAAG-TTTTTCCTCTAATCCCTTCCTTTTTTTCCCAATTTCTTTTCCCCAAA
1 TCCC-CAAATCCCTAAGCTTTTTCC-CAAATCCCTTCC-TTTTTTCCCAATTTCTTTTCCCCAAA
77947902 TCAATTAC-CC
63 TCAATT-CTCC
* * *
77947912 TCCCCATAATCCCTAAGCTTTTTGCCAAATCCCTTTCTTTTTTCCCAACTTCTTTTCCCCAAATC
1 TCCCCA-AATCCCTAAGCTTTTTCCCAAATCCCTTCCTTTTTTCCCAATTTCTTTTCCCCAAATC
*
77947977 AGTTCTCC
65 AATTCTCC
* *
77947985 TCCTCGAAATCCCTAA-CTTTTTCCCCAAATCCCCTCCTTTTT
1 TCC-CCAAATCCCTAAGCTTTTT-CCCAAATCCCTTCCTTTTT
77948027 CCCCCAATGT
Statistics
Matches: 165, Mismatches: 15, Indels: 20
0.82 0.08 0.10
Matches are distributed among these distances:
72 7 0.04
73 67 0.41
74 67 0.41
75 24 0.15
ACGTcount: A:0.20, C:0.38, G:0.03, T:0.39
Consensus pattern (72 bp):
TCCCCAAATCCCTAAGCTTTTTCCCAAATCCCTTCCTTTTTTCCCAATTTCTTTTCCCCAAATCA
ATTCTCC
Found at i:77948016 original size:20 final size:20
Alignment explanation
Indices: 77947991--77948030 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
77947981 CTCCTCCTCG
77947991 AAAT-CCCTAACTTTTTCCCC
1 AAATCCCCT-ACTTTTTCCCC
*
77948011 AAATCCCCTCCTTTTTCCCC
1 AAATCCCCTACTTTTTCCCC
77948031 CAATGTTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.20, C:0.45, G:0.00, T:0.35
Consensus pattern (20 bp):
AAATCCCCTACTTTTTCCCC
Found at i:77951153 original size:29 final size:29
Alignment explanation
Indices: 77951118--77951176 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
77951108 ACTTGTATTT
77951118 TGCATTATCAATCAAGTGATAGATAAGTA
1 TGCATTATCAATCAAGTGATAGATAAGTA
77951147 TGCATTATCAATCAAGTGATAGATAAGTA
1 TGCATTATCAATCAAGTGATAGATAAGTA
77951176 T
1 T
77951177 TAAGAGGGCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.32
Consensus pattern (29 bp):
TGCATTATCAATCAAGTGATAGATAAGTA
Found at i:77954862 original size:50 final size:50
Alignment explanation
Indices: 77954787--77954963 Score: 248
Period size: 50 Copynumber: 3.5 Consensus size: 50
77954777 CCATGGAAAC
77954787 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * *
77954837 AAGTGATAAGTAATAACTTCGGCTACACTTATCTGATTAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
77954887 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAATGG-CAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAA-GGACAAATGA
* * * *
77954937 CAACTGAAAAGTGGTAGCTTCAGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
77954964 CTGATCAGTA
Statistics
Matches: 113, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
50 88 0.78
51 25 0.22
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:77955118 original size:31 final size:31
Alignment explanation
Indices: 77954941--77955111 Score: 261
Period size: 31 Copynumber: 5.5 Consensus size: 31
77954931 AAATGACAAC
77954941 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
77954972 TAAAAAGTGGTAGTTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
77955003 TGAAAAGTGGTAGCTTCTGCTACCTAATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
77955034 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* **
77955065 TGAAAAATGGTAGCACCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
77955096 TGAATAGTGGTAGCTT
1 TGAAAAGTGGTAGCTT
77955112 TGGCTACAAG
Statistics
Matches: 124, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 124 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
Found at i:77955129 original size:7 final size:7
Alignment explanation
Indices: 77955117--77955145 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
77955107 AGCTTTGGCT
77955117 ACAAGTG
1 ACAAGTG
77955124 ACAAGTG
1 ACAAGTG
77955131 ACAAGTG
1 ACAAGTG
77955138 ACAAGTG
1 ACAAGTG
77955145 A
1 A
77955146 TTTCTGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.28, T:0.14
Consensus pattern (7 bp):
ACAAGTG
Found at i:77964724 original size:3 final size:3
Alignment explanation
Indices: 77964716--77964748 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
77964706 AAAATGGTTC
77964716 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
77964749 GATGATGATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:77964753 original size:3 final size:3
Alignment explanation
Indices: 77964747--77964790 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
77964737 AATAATAATA
77964747 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
77964791 AACAATAACA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.34, C:0.00, G:0.32, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:77965064 original size:21 final size:20
Alignment explanation
Indices: 77965040--77965080 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
77965030 TAAAATTTCA
*
77965040 GAATTATAAAAGGATATAAAT
1 GAATAATAAAAGGATA-AAAT
*
77965061 GAATAATAAAATGATAAAAT
1 GAATAATAAAAGGATAAAAT
77965081 CGCATAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.61, C:0.00, G:0.12, T:0.27
Consensus pattern (20 bp):
GAATAATAAAAGGATAAAAT
Found at i:77965106 original size:11 final size:11
Alignment explanation
Indices: 77965090--77965117 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
77965080 TCGCATAAAA
77965090 TAAATATTAGG
1 TAAATATTAGG
77965101 TAAATATTAGG
1 TAAATATTAGG
77965112 TAAATA
1 TAAATA
77965118 AACACGAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (11 bp):
TAAATATTAGG
Found at i:77967146 original size:23 final size:23
Alignment explanation
Indices: 77967093--77967138 Score: 69
Period size: 21 Copynumber: 2.1 Consensus size: 23
77967083 ATTTGGACTG
*
77967093 TTTTAATTTAGATCTTATTTGGT
1 TTTTATTTTAGATCTTATTTGGT
77967116 TTTTATTTTA-ATC-TATTTGGT
1 TTTTATTTTAGATCTTATTTGGT
77967137 TT
1 TT
77967139 ATTTATTTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 10 0.45
22 3 0.14
23 9 0.41
ACGTcount: A:0.20, C:0.04, G:0.11, T:0.65
Consensus pattern (23 bp):
TTTTATTTTAGATCTTATTTGGT
Found at i:77967147 original size:13 final size:13
Alignment explanation
Indices: 77967129--77967159 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
77967119 TATTTTAATC
*
77967129 TATTTGGTTTATT
1 TATTTGGCTTATT
77967142 TATTTGGCTTATT
1 TATTTGGCTTATT
77967155 TATTT
1 TATTT
77967160 ATTGTAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.16, C:0.03, G:0.13, T:0.68
Consensus pattern (13 bp):
TATTTGGCTTATT
Found at i:77968794 original size:42 final size:42
Alignment explanation
Indices: 77968738--77968821 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
77968728 TTGTAAGTTA
*
77968738 GAACACGATTTTTTTTTAACTCTCGAGAATATTTAAAATTTT
1 GAACACGATCTTTTTTTAACTCTCGAGAATATTTAAAATTTT
*
77968780 GAACACGATCTTTTTTTAACTCTTGAGAATATTTAAAATTTT
1 GAACACGATCTTTTTTTAACTCTCGAGAATATTTAAAATTTT
77968822 TACTTTAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.45
Consensus pattern (42 bp):
GAACACGATCTTTTTTTAACTCTCGAGAATATTTAAAATTTT
Found at i:77969089 original size:27 final size:27
Alignment explanation
Indices: 77969058--77969110 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
77969048 ATATAATATA
77969058 AAAAATAAACAAGCCAAAAA-TAAAAAAG
1 AAAAAT-AACAAG-CAAAAACTAAAAAAG
*
77969086 AAAAATAACAAGTAAAAACTAAAAA
1 AAAAATAACAAGCAAAAACTAAAAA
77969111 TTTGAAACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 5 0.22
27 12 0.52
28 6 0.26
ACGTcount: A:0.75, C:0.09, G:0.06, T:0.09
Consensus pattern (27 bp):
AAAAATAACAAGCAAAAACTAAAAAAG
Found at i:77969102 original size:13 final size:13
Alignment explanation
Indices: 77969058--77969108 Score: 50
Period size: 15 Copynumber: 3.7 Consensus size: 13
77969048 ATATAATATA
77969058 AAAAATAAACAAG
1 AAAAATAAACAAG
*
77969071 CCAAAAATAAAAAAG
1 --AAAAATAAACAAG
77969086 AAAAAT-AACAAG
1 AAAAATAAACAAG
77969098 TAAAAACTAAA
1 -AAAAA-TAAA
77969109 AATTTGAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
12 5 0.16
13 11 0.35
14 1 0.03
15 14 0.45
ACGTcount: A:0.75, C:0.10, G:0.06, T:0.10
Consensus pattern (13 bp):
AAAAATAAACAAG
Found at i:77970300 original size:24 final size:23
Alignment explanation
Indices: 77970234--77970302 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 23
77970224 ATGTAATTTG
77970234 TAATAA-AATATATACATAAATAA-
1 TAATAATAATATATA-ATAAA-AAT
* *
77970257 TAATAATAATA-AT-TTTAAAAT
1 TAATAATAATATATAATAAAAAT
77970278 TAATAATAATGATATAATAAAAAT
1 TAATAATAAT-ATATAATAAAAAT
77970302 T
1 T
77970303 TAAAATTTCA
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
20 2 0.05
21 13 0.35
22 1 0.03
23 10 0.27
24 11 0.30
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.36
Consensus pattern (23 bp):
TAATAATAATATATAATAAAAAT
Found at i:77970342 original size:21 final size:20
Alignment explanation
Indices: 77970313--77970353 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
77970303 TAAAATTTCA
*
77970313 GAATTATAAAAGGATATAAAT
1 GAATAATAAAAGGATA-AAAT
77970334 GAATAATAAAAGGATAAAAT
1 GAATAATAAAAGGATAAAAT
77970354 CACATAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.61, C:0.00, G:0.15, T:0.24
Consensus pattern (20 bp):
GAATAATAAAAGGATAAAAT
Found at i:77970360 original size:21 final size:21
Alignment explanation
Indices: 77970318--77970360 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
77970308 TTTCAGAATT
*
77970318 ATAAAAGGATATAAATGAATA
1 ATAAAAGGATATAAATCAATA
77970339 ATAAAAGGATA-AAATCACATA
1 ATAAAAGGATATAAATCA-ATA
77970360 A
1 A
77970361 AATAAATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.63, C:0.05, G:0.12, T:0.21
Consensus pattern (21 bp):
ATAAAAGGATATAAATCAATA
Found at i:77970379 original size:11 final size:11
Alignment explanation
Indices: 77970363--77970387 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
77970353 TCACATAAAA
77970363 TAAATATTAGG
1 TAAATATTAGG
77970374 TAAATATTAGG
1 TAAATATTAGG
77970385 TAA
1 TAA
77970388 CTAAATGCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (11 bp):
TAAATATTAGG
Found at i:77982510 original size:26 final size:26
Alignment explanation
Indices: 77982474--77982525 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
77982464 CAAGCTTCGG
77982474 TAGCCACTATAAAACACAGAAAAGTA
1 TAGCCACTATAAAACACAGAAAAGTA
77982500 TAGCCACTATAAAACACAGAAAAGTA
1 TAGCCACTATAAAACACAGAAAAGTA
77982526 AATAGAGTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.54, C:0.19, G:0.12, T:0.15
Consensus pattern (26 bp):
TAGCCACTATAAAACACAGAAAAGTA
Found at i:77988774 original size:49 final size:48
Alignment explanation
Indices: 77988669--77988944 Score: 171
Period size: 48 Copynumber: 5.8 Consensus size: 48
77988659 ATACGATATC
* * * * * * *
77988669 GATGCCATGTTCCAAACATGGTCTTACATTGGCTCACATA-TC-TAAGT
1 GATGCCATGTCCCAGACA-GGTCTTACACTGACTCTCATATTCATGACT
* *
77988716 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCATGATT
1 -GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATAT-TCATGACT
* * * * *
77988766 GATGCCATGTCCCAGACTGGTCTTACACTGA--CACAT-GTCAAG-CC
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATTCATGACT
* * *
77988810 GATGCCATGTCCCAAATAGGTCTTACACT-AGCT-TGCATATCTCGA-GGCT
1 GATGCCATGTCCCAGACAGGTCTTACACTGA-CTCT-CATAT-TC-ATGACT
* * * * *
77988859 AATG-CATGTCCCAGACATGTCTTACACT-AGCTCTCATCTTAAT-ATT
1 GATGCCATGTCCCAGACAGGTCTTACACTGA-CTCTCATATTCATGACT
* *
77988905 GATGCCATGTCCTAGACACGGTCTTACACTGGCTCTCATA
1 GATGCCATGTCCCAGACA-GGTCTTACACTGACTCTCATA
77988945 ATGTGGCCGA
Statistics
Matches: 178, Mismatches: 34, Indels: 32
0.73 0.14 0.13
Matches are distributed among these distances:
43 1 0.01
44 26 0.15
45 4 0.02
46 8 0.04
47 33 0.19
48 65 0.37
49 38 0.21
50 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (48 bp):
GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATTCATGACT
Found at i:77989675 original size:20 final size:20
Alignment explanation
Indices: 77989650--77989688 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
77989640 AAAATTTCAA
77989650 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
77989670 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
77989689 AATAGCCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:77995332 original size:12 final size:12
Alignment explanation
Indices: 77995315--77995340 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
77995305 TCATGAGCAT
77995315 TTTTATTTATCC
1 TTTTATTTATCC
77995327 TTTTATTTATCC
1 TTTTATTTATCC
77995339 TT
1 TT
77995341 CATTAACCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTTATTTATCC
Found at i:78003123 original size:221 final size:221
Alignment explanation
Indices: 78002740--78003165 Score: 762
Period size: 221 Copynumber: 1.9 Consensus size: 221
78002730 TAAAGACATG
* * *
78002740 TTAAATCCCTACAAATTTAATTTTATTCTCTTATTTAAGATTAAGCTGCAATCATTAAGTTTAAT
1 TTAAATCCCTAAAAATTTAATTTTATTCCCTTATTTAAGATTAAGCCGCAATCATTAAGTTTAAT
*
78002805 TTATGCCTTCATATGTTGAACATTGCAATTCCTCTCAACTAGTGTAGGTAGCACAAAAATTTGAA
66 TTATGCCTTCATATGTTGAACATTGCAATTCCTCTCAACTAGTGTAGGTAGCACAAAAACTTGAA
* * *
78002870 TCAATAGGTCTTTTAAATAGGTTGTAGCATGGCTAGGCTAGGGGTAGGTAAAAGATAGATAAATT
131 CCAATAGGTCTTTTAAATAGGTTGTAGCATGGCCAAGCTAGGGGTAGGTAAAAGATAGATAAATT
78002935 TAGGCTAAAACCCAATTTAATTTTAT
196 TAGGCTAAAACCCAATTTAATTTTAT
78002961 TTAAATCCCTAAAAATTTAATTTTATTCCCTTATTTAAGATTAAGCCGCAATCATTAAGTTTAAT
1 TTAAATCCCTAAAAATTTAATTTTATTCCCTTATTTAAGATTAAGCCGCAATCATTAAGTTTAAT
* *
78003026 TTATGCCTTCATATGTTGAACATTGCAATTTCTCTCCACTAGTGTAGGTAGCACAAAAACTTGAA
66 TTATGCCTTCATATGTTGAACATTGCAATTCCTCTCAACTAGTGTAGGTAGCACAAAAACTTGAA
*
78003091 CCAATAGGTCTTTTAAATAGGTTGTAGCATGGCCAAGTTAGGGGTAGGTAAAAGATAGATAAATT
131 CCAATAGGTCTTTTAAATAGGTTGTAGCATGGCCAAGCTAGGGGTAGGTAAAAGATAGATAAATT
78003156 TAGGCTAAAA
196 TAGGCTAAAA
78003166 ACCCTAGACT
Statistics
Matches: 195, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
221 195 1.00
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (221 bp):
TTAAATCCCTAAAAATTTAATTTTATTCCCTTATTTAAGATTAAGCCGCAATCATTAAGTTTAAT
TTATGCCTTCATATGTTGAACATTGCAATTCCTCTCAACTAGTGTAGGTAGCACAAAAACTTGAA
CCAATAGGTCTTTTAAATAGGTTGTAGCATGGCCAAGCTAGGGGTAGGTAAAAGATAGATAAATT
TAGGCTAAAACCCAATTTAATTTTAT
Found at i:78005672 original size:30 final size:30
Alignment explanation
Indices: 78005637--78005694 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
78005627 TAGACACTTC
78005637 CACACGGGT-GATCCACACGCCCGTGTGTGA
1 CACACGGGTAGAT-CACACGCCCGTGTGTGA
* *
78005667 CACACGGGTAGATCACATGCCTGTGTGT
1 CACACGGGTAGATCACACGCCCGTGTGT
78005695 CATGGCCGCG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 22 0.88
31 3 0.12
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (30 bp):
CACACGGGTAGATCACACGCCCGTGTGTGA
Found at i:78007071 original size:34 final size:34
Alignment explanation
Indices: 78007028--78007096 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
78007018 AGAAGAAGGG
78007028 TACGAGGACGATATTCACACCACAACCGAGGAGA
1 TACGAGGACGATATTCACACCACAACCGAGGAGA
78007062 TACGAGGACGATATTCACACCACAACCGAGGAGA
1 TACGAGGACGATATTCACACCACAACCGAGGAGA
78007096 T
1 T
78007097 GGCTGAAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.38, C:0.26, G:0.23, T:0.13
Consensus pattern (34 bp):
TACGAGGACGATATTCACACCACAACCGAGGAGA
Found at i:78008643 original size:37 final size:37
Alignment explanation
Indices: 78008585--78008655 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
78008575 GCTCAGACGA
* *
78008585 AATCTCCACATGAAGTTATCGGGTCTTACCCGGACAT
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAT
*
78008622 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGA
78008656 ATATATTTCC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAT
Found at i:78008853 original size:46 final size:46
Alignment explanation
Indices: 78008790--78008935 Score: 186
Period size: 46 Copynumber: 3.1 Consensus size: 46
78008780 GCCACAATAT
* * * *
78008790 ATATATACGCATCTCATACATATCTCACATTAGCCATTTGGCTTTACC
1 ATATAT-C-CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACC
*
78008838 ATATATCCATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACC
1 ATATATCCATCTCATACACATTTCGCATTAGCCATTCGGCTTTACC
* *
78008884 -TCATATCTATCTCATACACATTTCGCATTAGCCATTCGGCCTTACC
1 AT-ATATCCATCTCATACACATTTCGCATTAGCCATTCGGCTTTACC
*
78008930 ACATAT
1 ATATAT
78008936 ATACATGTTC
Statistics
Matches: 87, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
45 1 0.01
46 79 0.91
47 1 0.01
48 6 0.07
ACGTcount: A:0.27, C:0.29, G:0.09, T:0.35
Consensus pattern (46 bp):
ATATATCCATCTCATACACATTTCGCATTAGCCATTCGGCTTTACC
Found at i:78008970 original size:47 final size:47
Alignment explanation
Indices: 78008909--78009006 Score: 142
Period size: 47 Copynumber: 2.1 Consensus size: 47
78008899 ACACATTTCG
* *
78008909 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCACCA
1 CATTAGCCATTCGGCCTTACCACACATACACATGTTCACATTCACCA
* * * *
78008956 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTAGCCATTCGGCCTTACCACACATACACATGTTCACATTCACCA
78009003 CATT
1 CATT
78009007 TAATCCTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.28, C:0.32, G:0.10, T:0.31
Consensus pattern (47 bp):
CATTAGCCATTCGGCCTTACCACACATACACATGTTCACATTCACCA
Found at i:78012783 original size:79 final size:81
Alignment explanation
Indices: 78012670--78012852 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
78012660 TACTCGTTCA
* *
78012670 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
78012733 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
78012750 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
78012813 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
78012829 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
78012853 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:78012852 original size:40 final size:40
Alignment explanation
Indices: 78012668--78012852 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
78012658 GCTACTCGTT
* *
78012668 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
78012708 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
78012748 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
78012787 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
78012828 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
78012853 CATCATTCGA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:78020831 original size:79 final size:81
Alignment explanation
Indices: 78020718--78020900 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
78020708 TACTCGTTCA
* *
78020718 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTC-GGATCTTAACCCGG
* *
78020781 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
78020798 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGA
* *
78020861 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
78020877 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
78020901 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:78020900 original size:40 final size:40
Alignment explanation
Indices: 78020716--78020900 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
78020706 GCTACTCGTT
* *
78020716 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACT-AGCA
* * *
78020756 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* *
78020796 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCA
* * *
78020835 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
78020876 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
78020901 CATCATTCGA
Statistics
Matches: 124, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.63
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:78023566 original size:40 final size:39
Alignment explanation
Indices: 78023519--78023923 Score: 540
Period size: 40 Copynumber: 10.1 Consensus size: 39
78023509 CGAATACACG
* * *
78023519 TCACCAGCATGATTGCTCTTCGGGACCTAGCCTGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCC-GGATATA
* * * **
78023559 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGC-CGGATATA
* *
78023599 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAG-CCGGATATA
* *
78023639 TCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAG-CCGGATATA
78023679 TCACTAGCATGAATGCTCTTCGGGACTTAGCTCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGC-CGGATATA
* *
78023719 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAG-CCGGATATA
*
78023759 TCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAG-CCGGATATA
* * *
78023799 TCACTAGCATGAATGCTCTTCGGAACTTAGTACGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAG-CCGGATATA
78023839 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAG-CCGGATATA
* *
78023879 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAG-CCGGATATA
78023919 TCACT
1 TCACT
78023924 CTCAATTCTC
Statistics
Matches: 325, Mismatches: 36, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
39 1 0.00
40 321 0.99
41 3 0.01
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.27
Consensus pattern (39 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCGGATATA
Found at i:78023630 original size:80 final size:80
Alignment explanation
Indices: 78023519--78023923 Score: 623
Period size: 80 Copynumber: 5.1 Consensus size: 80
78023509 CGAATACACG
* * * * * * **
78023519 TCACCAGCATGATTGCTCTTCGGGACCTAGCCTGGATATAACACCAGCACGAATGCTCTTCGGGG
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAA
* *
78023584 TTTAG-CACGGATATA
66 CTTAGTC-CGGATACA
* * *
78023599 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAA
78023664 CTTAGTCCGGATACA
66 CTTAGTCCGGATACA
* *
78023679 TCACTAGCATGAATGCTCTTCGGGACTTAGCTCGGATATATCACTAGCATGAATGCTCTTCGGAA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAA
78023744 CTTAGTCCGGATACA
66 CTTAGTCCGGATACA
* *
78023759 TCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATATATCACTAGCATGAATGCTCTTCGGAA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAA
*
78023824 CTTAGTACGGATACA
66 CTTAGTCCGGATACA
78023839 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAA
*
78023904 CTTAGTCCGGATATA
66 CTTAGTCCGGATACA
78023919 TCACT
1 TCACT
78023924 CTCAATTCTC
Statistics
Matches: 301, Mismatches: 23, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
80 300 1.00
81 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.27
Consensus pattern (80 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAA
CTTAGTCCGGATACA
Found at i:78023745 original size:120 final size:120
Alignment explanation
Indices: 78023532--78023923 Score: 599
Period size: 120 Copynumber: 3.3 Consensus size: 120
78023522 CCAGCATGAT
* * * * ** *
78023532 TGCTCTTCGGGACCTAG-CCTGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGAT
1 TGCTCTTCGGGACTTAGTCC-GGATATATCACTAGCATGAATGCTCTTCGGGACTTAGCTCGGAT
78023596 ATATCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
65 ATATCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
78023652 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCTCGGATA
1 TGCTCTTCGGGACTTAGTCCGGATATATCACTAGCATGAATGCTCTTCGGGACTTAGCTCGGATA
* *
78023717 TATCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCATGAA
66 TATCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * *
78023772 TGCTCTTTGGGACTTAGCCCGGATATATCACTAGCATGAATGCTCTTCGGAACTTAG-TACGGAT
1 TGCTCTTCGGGACTTAGTCCGGATATATCACTAGCATGAATGCTCTTCGGGACTTAGCT-CGGAT
* * *
78023836 ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
65 ATATCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
78023892 TGCTCTTCGGAACTTAGTCCGGATATATCACT
1 TGCTCTTCGGGACTTAGTCCGGATATATCACT
78023924 CTCAATTCTC
Statistics
Matches: 248, Mismatches: 22, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
119 1 0.00
120 245 0.99
121 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (120 bp):
TGCTCTTCGGGACTTAGTCCGGATATATCACTAGCATGAATGCTCTTCGGGACTTAGCTCGGATA
TATCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:78025470 original size:46 final size:46
Alignment explanation
Indices: 78025402--78025538 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
78025392 ATATATAACG
* * * * *
78025402 CATCTCAAACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
78025448 CATCTCATACACGTTTCGCATTAGCCATTCGTCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
78025494 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
78025539 ATACATGTTC
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.26, C:0.31, G:0.08, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:78025577 original size:47 final size:47
Alignment explanation
Indices: 78025512--78025609 Score: 142
Period size: 47 Copynumber: 2.1 Consensus size: 47
78025502 ACACATTTCG
* *
78025512 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTAGCCATTCGGCCTTACCACACATACACATGTTCACATTCATCA
* * * *
78025559 CATTGGCCTTTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTAGCCATTCGGCCTTACCACACATACACATGTTCACATTCATCA
78025606 CATT
1 CATT
78025610 TAATCCTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.33
Consensus pattern (47 bp):
CATTAGCCATTCGGCCTTACCACACATACACATGTTCACATTCATCA
Found at i:78030030 original size:79 final size:81
Alignment explanation
Indices: 78029921--78030103 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
78029911 TACTCGTTCA
* *
78029921 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
78029984 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
78030001 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
78030064 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
78030080 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
78030104 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:78030103 original size:40 final size:40
Alignment explanation
Indices: 78029900--78030103 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
78029890 CGGAATTTAA
** *
78029900 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
78029940 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
78029980 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
78030019 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
78030059 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
78030099 CCGGA
1 CCGGA
78030104 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:78038052 original size:79 final size:81
Alignment explanation
Indices: 78037943--78038125 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
78037933 TACTCGTTCA
* *
78037943 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
78038006 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
78038023 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
78038086 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
78038102 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
78038126 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:78038125 original size:40 final size:40
Alignment explanation
Indices: 78037922--78038125 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
78037912 CGGAATTTAA
** *
78037922 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
78037962 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
78038002 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
78038041 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
78038081 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
78038121 CCGGA
1 CCGGA
78038126 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:78040648 original size:40 final size:39
Alignment explanation
Indices: 78040601--78041005 Score: 531
Period size: 40 Copynumber: 10.1 Consensus size: 39
78040591 CGAATACACG
* * *
78040601 TCACCAGCATGATTGCTCTTCGGGACCTAGCCTGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCC-GGATATA
* * * **
78040641 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGC-CGGATATA
* *
78040681 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAG-CCGGATATA
* *
78040721 TCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAG-CCGGATATA
78040761 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAG-CCGGATATA
* *
78040801 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAG-CCGGATATA
78040841 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAG-CCGGATATA
* * * *
78040881 TCACTAGCACGAATGCTCTTCGGAACTTAGTACGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAG-CCGGATATA
78040921 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAG-CCGGATATA
* * *
78040961 TGACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAG-CCGGATATA
78041001 TCACT
1 TCACT
78041006 CTCAATTCTC
Statistics
Matches: 323, Mismatches: 40, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
40 321 0.99
41 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCGGATATA
Found at i:78040712 original size:80 final size:80
Alignment explanation
Indices: 78040601--78041005 Score: 641
Period size: 80 Copynumber: 5.1 Consensus size: 80
78040591 CGAATACACG
* * * * * * **
78040601 TCACCAGCATGATTGCTCTTCGGGACCTAGCCTGGATATAACACCAGCACGAATGCTCTTCGGGG
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAA
* *
78040666 TTTAG-CACGGATATA
66 CTTAGTC-CGGATACA
* * *
78040681 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAA
78040746 CTTAGTCCGGATACA
66 CTTAGTCCGGATACA
*
78040761 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCATGAATGCTCTTCGGAA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAA
78040826 CTTAGTCCGGATACA
66 CTTAGTCCGGATACA
78040841 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAA
*
78040906 CTTAGTACGGATACA
66 CTTAGTCCGGATACA
*
78040921 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATGACTAGCACGAATGCTCTTCGGAA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAA
*
78040986 CTTAGTCCGGATATA
66 CTTAGTCCGGATACA
78041001 TCACT
1 TCACT
78041006 CTCAATTCTC
Statistics
Matches: 304, Mismatches: 20, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
80 303 1.00
81 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAA
CTTAGTCCGGATACA
Found at i:78040827 original size:120 final size:120
Alignment explanation
Indices: 78040614--78041005 Score: 606
Period size: 120 Copynumber: 3.3 Consensus size: 120
78040604 CCAGCATGAT
* * * **
78040614 TGCTCTTCGGGACCTAG-CCTGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGAT
1 TGCTCTTCGGGACTTAGTCC-GGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCACGGAT
78040678 ATATCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
65 ATATCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * *
78040734 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCACGGATA
* *
78040799 TATCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCATGAA
66 TATCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * *
78040854 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTACGGATA
1 TGCTCTTCGGGACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCACGGATA
* * * *
78040919 CATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATGACTAGCACGAA
66 TATCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
78040974 TGCTCTTCGGAACTTAGTCCGGATATATCACT
1 TGCTCTTCGGGACTTAGTCCGGATATATCACT
78041006 CTCAATTCTC
Statistics
Matches: 247, Mismatches: 24, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
120 245 0.99
121 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (120 bp):
TGCTCTTCGGGACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCACGGATA
TATCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:78042541 original size:46 final size:46
Alignment explanation
Indices: 78042488--78042624 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
78042478 TATATATACG
* * * *
78042488 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
78042534 CATCTCATACACGTTTCGCATTAGCCATTCGTCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
78042580 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
78042625 ATACATGTTC
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.26, C:0.31, G:0.08, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:78042659 original size:47 final size:47
Alignment explanation
Indices: 78042598--78042695 Score: 151
Period size: 47 Copynumber: 2.1 Consensus size: 47
78042588 ACACATTTCG
* *
78042598 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTAGCCATTCGGCCTTACCACACATACACATGTTCACATTCATCA
* * *
78042645 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTAGCCATTCGGCCTTACCACACATACACATGTTCACATTCATCA
78042692 CATT
1 CATT
78042696 TAATCCTAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.32
Consensus pattern (47 bp):
CATTAGCCATTCGGCCTTACCACACATACACATGTTCACATTCATCA
Found at i:78047680 original size:28 final size:28
Alignment explanation
Indices: 78047640--78047699 Score: 95
Period size: 28 Copynumber: 2.1 Consensus size: 28
78047630 ACCTAAACTG
*
78047640 ACCAATTCATTCATACCCTTTCGATT-AT
1 ACCAATTCATTCATACCATTTCG-TTCAT
78047668 ACCAATTCATTCATACCATTTCGTTCAT
1 ACCAATTCATTCATACCATTTCGTTCAT
78047696 ACCA
1 ACCA
78047700 CTCTTACCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 2 0.07
28 28 0.93
ACGTcount: A:0.30, C:0.30, G:0.03, T:0.37
Consensus pattern (28 bp):
ACCAATTCATTCATACCATTTCGTTCAT
Found at i:78047683 original size:14 final size:14
Alignment explanation
Indices: 78047640--78047699 Score: 68
Period size: 14 Copynumber: 4.3 Consensus size: 14
78047630 ACCTAAACTG
78047640 ACCAATTCATTCAT
1 ACCAATTCATTCAT
**
78047654 ACCCTTTCGATT-AT
1 ACCAATTC-ATTCAT
78047668 ACCAATTCATTCAT
1 ACCAATTCATTCAT
* *
78047682 ACCATTTCGTTCAT
1 ACCAATTCATTCAT
78047696 ACCA
1 ACCA
78047700 CTCTTACCAT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
13 3 0.08
14 32 0.84
15 3 0.08
ACGTcount: A:0.30, C:0.30, G:0.03, T:0.37
Consensus pattern (14 bp):
ACCAATTCATTCAT
Found at i:78048073 original size:11 final size:11
Alignment explanation
Indices: 78048059--78048087 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
78048049 AAAGTATATA
78048059 AAAAAAATTCG
1 AAAAAAATTCG
78048070 AAAAAAATTCG
1 AAAAAAATTCG
78048081 AAAAAAA
1 AAAAAAA
78048088 GGGTGTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.72, C:0.07, G:0.07, T:0.14
Consensus pattern (11 bp):
AAAAAAATTCG
Found at i:78054672 original size:28 final size:28
Alignment explanation
Indices: 78054632--78054691 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
78054622 ACCTAGACTG
*
78054632 ACCAATTCATTCATACCCCTTCGATCAT
1 ACCAATTCATTCATACCACTTCGATCAT
* *
78054660 ACCAATTCATTCATACCATTTCGTTCAT
1 ACCAATTCATTCATACCACTTCGATCAT
78054688 ACCA
1 ACCA
78054692 CTCTTACCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.30, C:0.33, G:0.03, T:0.33
Consensus pattern (28 bp):
ACCAATTCATTCATACCACTTCGATCAT
Found at i:78054673 original size:14 final size:14
Alignment explanation
Indices: 78054632--78054691 Score: 68
Period size: 14 Copynumber: 4.3 Consensus size: 14
78054622 ACCTAGACTG
78054632 ACCAATTCATTCAT
1 ACCAATTCATTCAT
**
78054646 ACCCCTTCGA-TCAT
1 ACCAATTC-ATTCAT
78054660 ACCAATTCATTCAT
1 ACCAATTCATTCAT
* *
78054674 ACCATTTCGTTCAT
1 ACCAATTCATTCAT
78054688 ACCA
1 ACCA
78054692 CTCTTACCAT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
13 1 0.03
14 36 0.95
15 1 0.03
ACGTcount: A:0.30, C:0.33, G:0.03, T:0.33
Consensus pattern (14 bp):
ACCAATTCATTCAT
Found at i:78057927 original size:93 final size:93
Alignment explanation
Indices: 78057820--78057991 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
78057810 GCCCATAAGT
* *
78057820 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
78057885 CAAGCTCGGATGCCTAGTTACATCTCTC
66 CAAGCTCGGATGCCTAGTTACATCTCTC
* *
78057913 GAACTTGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
78057978 CGAGTTCGGATGCC
66 CAAGCTCGGATGCC
78057992 CAAATATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGCTCGGATGCCTAGTTACATCTCTC
Found at i:78057987 original size:46 final size:46
Alignment explanation
Indices: 78057812--78057987 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
78057802 TGTAACCCGC
* *
78057812 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
78057858 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** * *
78057904 ACATCTCTCGAACTTGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
78057951 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
78057988 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 68 0.64
47 30 0.28
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:78063467 original size:46 final size:44
Alignment explanation
Indices: 78063324--78063467 Score: 116
Period size: 46 Copynumber: 3.1 Consensus size: 44
78063314 CCCGCCCATA
* *
78063324 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * *
78063373 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
78063416 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
78063463 AGTGA
1 AGTGA
78063468 TATGTCACTT
Statistics
Matches: 77, Mismatches: 8, Indels: 23
0.71 0.07 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
44 4 0.05
46 33 0.43
47 28 0.36
48 4 0.05
49 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:78066783 original size:12 final size:12
Alignment explanation
Indices: 78066749--78066793 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
78066739 ATAAGTCTTC
*
78066749 AAAAATAAATAATG
1 AAAAAT-AA-AATT
78066763 AAAAATAAAATT
1 AAAAATAAAATT
*
78066775 AAAATTAAAATT
1 AAAAATAAAATT
78066787 AAAAATA
1 AAAAATA
78066794 GTAATAGAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
12 20 0.71
13 2 0.07
14 6 0.21
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (12 bp):
AAAAATAAAATT
Found at i:78075224 original size:20 final size:21
Alignment explanation
Indices: 78075179--78075227 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
78075169 CTCCATTGTT
* *
78075179 CTTTTTCTCCTCTTCCCTTCT
1 CTTTTTCTTCTCTTCCCTTCC
*
78075200 C-TTTTCTTCTCTT-CTTTCC
1 CTTTTTCTTCTCTTCCCTTCC
78075219 CTTTTTCTT
1 CTTTTTCTT
78075228 TCCCTTTCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 5 0.21
20 18 0.75
21 1 0.04
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (21 bp):
CTTTTTCTTCTCTTCCCTTCC
Found at i:78080797 original size:27 final size:28
Alignment explanation
Indices: 78080767--78080821 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
78080757 AAAAATTATT
*
78080767 ATAAATTAATTA-AAATTAAATATTTTA
1 ATAAATTAAGTACAAATTAAATATTTTA
* * *
78080794 ATAATTTAAGTACAATTTAATTATTTTA
1 ATAAATTAAGTACAAATTAAATATTTTA
78080822 TAATTATATT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (28 bp):
ATAAATTAAGTACAAATTAAATATTTTA
Found at i:78080824 original size:27 final size:26
Alignment explanation
Indices: 78080765--78080826 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
78080755 GAAAAAATTA
* *
78080765 TTATAAATTAATTAAAATTAAATATT
1 TTATAATTTAAGTAAAATTAAATATT
* *
78080791 TTAATAATTTAAGTACAATTTAATTATT
1 TT-ATAATTTAAGTA-AAATTAAATATT
78080819 TTATAATT
1 TTATAATT
78080827 ATATTATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 2 0.07
27 16 0.53
28 12 0.40
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (26 bp):
TTATAATTTAAGTAAAATTAAATATT
Found at i:78081823 original size:21 final size:18
Alignment explanation
Indices: 78081780--78081834 Score: 67
Period size: 18 Copynumber: 3.0 Consensus size: 18
78081770 ATCTACTAGA
78081780 TAATAATATTAAATATTT
1 TAATAATATTAAATATTT
*
78081798 TAATAATATTAAATCTTAT
1 TAATAATATTAAATATT-T
*
78081817 TAA-AATAATAAAATATTT
1 TAATAAT-ATTAAATATTT
78081835 ATCTACTAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 20 0.62
19 12 0.38
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (18 bp):
TAATAATATTAAATATTT
Found at i:78081944 original size:37 final size:35
Alignment explanation
Indices: 78081866--78081957 Score: 96
Period size: 37 Copynumber: 2.5 Consensus size: 35
78081856 TTAAATTTAA
78081866 TATTAAAATAATCACTTGAATATTAAATTAATAAAATAC
1 TATTAAAATAAT-A-TT-AA-ATTAAATTAATAAAATAC
* *
78081905 TATTAAGATAAGTATTAAATTAAATTTAATATTAA-AC
1 TATTAAAATAA-TATTAAATTAAA-TTAATA-AAATAC
78081942 TATTAAAATAATATTA
1 TATTAAAATAATATTA
78081958 TTGTTGGAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
36 11 0.23
37 20 0.43
38 4 0.09
39 11 0.23
40 1 0.02
ACGTcount: A:0.53, C:0.04, G:0.03, T:0.39
Consensus pattern (35 bp):
TATTAAAATAATATTAAATTAAATTAATAAAATAC
Found at i:78091857 original size:24 final size:23
Alignment explanation
Indices: 78091822--78091906 Score: 63
Period size: 19 Copynumber: 3.7 Consensus size: 23
78091812 AAAAGAAAAT
*
78091822 GAAA-AGATGAGGAAGGGGTAGGA
1 GAAAGAGAAGAGGAA-GGGTAGGA
78091845 GAAAGAGAAGAGGAA--G-A-GA
1 GAAAGAGAAGAGGAAGGGTAGGA
*
78091864 GAAAGAAAAGAGGAAGAAAAGGTAGGA
1 GAAAGAGAAGAGGAAG----GGTAGGA
*
78091891 GAAAGAGAAAAGGAAG
1 GAAAGAGAAGAGGAAG
78091907 AAGAAAGGAG
Statistics
Matches: 49, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
19 16 0.33
20 1 0.02
21 1 0.02
23 4 0.08
24 9 0.18
25 1 0.02
26 1 0.02
27 16 0.33
ACGTcount: A:0.55, C:0.00, G:0.41, T:0.04
Consensus pattern (23 bp):
GAAAGAGAAGAGGAAGGGTAGGA
Found at i:78091867 original size:19 final size:19
Alignment explanation
Indices: 78091843--78091880 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
78091833 GAAGGGGTAG
*
78091843 GAGAAAGAGAAGAGGAAGA
1 GAGAAAGAAAAGAGGAAGA
78091862 GAGAAAGAAAAGAGGAAGA
1 GAGAAAGAAAAGAGGAAGA
78091881 AAAGGTAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (19 bp):
GAGAAAGAAAAGAGGAAGA
Found at i:78091901 original size:18 final size:18
Alignment explanation
Indices: 78091878--78091913 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
78091868 GAAAAGAGGA
* *
78091878 AGAAAAGGTAGGAGAAAG
1 AGAAAAGGAAGAAGAAAG
78091896 AGAAAAGGAAGAAGAAAG
1 AGAAAAGGAAGAAGAAAG
78091914 GAGAGTTGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.36, T:0.03
Consensus pattern (18 bp):
AGAAAAGGAAGAAGAAAG
Found at i:78093005 original size:20 final size:20
Alignment explanation
Indices: 78092980--78093022 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
78092970 AAAGAAGGTT
*
78092980 GTACCACATTATCAGTATTA
1 GTACCACATGATCAGTATTA
*
78093000 GTACCACATGATTAGTATTA
1 GTACCACATGATCAGTATTA
78093020 GTA
1 GTA
78093023 GTATGATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (20 bp):
GTACCACATGATCAGTATTA
Found at i:78098457 original size:31 final size:30
Alignment explanation
Indices: 78098422--78098502 Score: 76
Period size: 29 Copynumber: 2.7 Consensus size: 30
78098412 AACTCACACT
* *
78098422 TGGTACCTATACTTTTATAAAATGTCCAATG
1 TGGTACATATACTTTT-GAAAATGTCCAATG
** * *
78098453 TGGTATTTTTAC-TCTGAAAATGTCCAATG
1 TGGTACATATACTTTTGAAAATGTCCAATG
*
78098482 TGGTACATGTAC-TTTGAAAAT
1 TGGTACATATACTTTTGAAAAT
78098503 CCTTATTGTA
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
29 30 0.73
30 2 0.05
31 9 0.22
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.40
Consensus pattern (30 bp):
TGGTACATATACTTTTGAAAATGTCCAATG
Found at i:78098494 original size:29 final size:29
Alignment explanation
Indices: 78098440--78098502 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 29
78098430 ATACTTTTAT
** *
78098440 AAAATGTCCAATGTGGTATTTTTACTCTG
1 AAAATGTCCAATGTGGTACATGTACTCTG
*
78098469 AAAATGTCCAATGTGGTACATGTACTTTG
1 AAAATGTCCAATGTGGTACATGTACTCTG
78098498 AAAAT
1 AAAAT
78098503 CCTTATTGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (29 bp):
AAAATGTCCAATGTGGTACATGTACTCTG
Found at i:78099512 original size:63 final size:62
Alignment explanation
Indices: 78099412--78099531 Score: 204
Period size: 63 Copynumber: 1.9 Consensus size: 62
78099402 ATAGTATTAG
*
78099412 CACAACCCAAAATCTAGGCCAATAAATTGTCAATAACTCAAATATGGACACAGGCTTATCAA
1 CACAACCCAAAATCTAGGCCAATAAATTGTCAATAACTCAAATATGGACACAAGCTTATCAA
* *
78099474 CACAACCCAAAAATCTAGGCTAATAAATTGTCATTAACTCAAATATGGACACAAGCTT
1 CACAACCC-AAAATCTAGGCCAATAAATTGTCAATAACTCAAATATGGACACAAGCTT
78099532 TTTCGTCACA
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
62 8 0.15
63 46 0.85
ACGTcount: A:0.43, C:0.23, G:0.11, T:0.23
Consensus pattern (62 bp):
CACAACCCAAAATCTAGGCCAATAAATTGTCAATAACTCAAATATGGACACAAGCTTATCAA
Found at i:78102241 original size:20 final size:22
Alignment explanation
Indices: 78102209--78102275 Score: 77
Period size: 20 Copynumber: 3.2 Consensus size: 22
78102199 AAATATTTCA
**
78102209 ATAAATAAAAAATAAAAATA-T
1 ATAAATATTAAATAAAAATAGT
*
78102230 -TAAATATTAAATTAAAATAGT
1 ATAAATATTAAATAAAAATAGT
*
78102251 ATAAATATTTAA-AAAAATAGT
1 ATAAATATTAAATAAAAATAGT
78102272 ATAA
1 ATAA
78102276 TTGGTTTGTG
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
20 16 0.41
21 13 0.33
22 10 0.26
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (22 bp):
ATAAATATTAAATAAAAATAGT
Found at i:78102269 original size:21 final size:20
Alignment explanation
Indices: 78102222--78102275 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 20
78102212 AATAAAAAAT
78102222 AAAAATA-T-TAAATATTAA
1 AAAAATAGTATAAATATTAA
78102240 ATTAAAATAGTATAAATATTTAA
1 A--AAAATAGTATAAATA-TTAA
78102263 AAAAATAGTATAA
1 AAAAATAGTATAA
78102276 TTGGTTTGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
18 1 0.03
20 6 0.19
21 13 0.42
22 6 0.19
23 5 0.16
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (20 bp):
AAAAATAGTATAAATATTAA
Found at i:78108094 original size:54 final size:54
Alignment explanation
Indices: 78108012--78108128 Score: 173
Period size: 54 Copynumber: 2.2 Consensus size: 54
78108002 AAATATGGGT
* *
78108012 TGGTAATCCCGCCATTACTCAGTGAGCTTATGTTATAAGGGATTTAGCCTAGAC
1 TGGTAATCCCGACATTACTCAGTGAGCTTATGTTATAAGGGATTTAGACTAGAC
**
78108066 TGGTAATCCCGACATTACTCTA-TGAGCTTATGTTATGGGGGATTTAGACTAGAC
1 TGGTAATCCCGACATTACTC-AGTGAGCTTATGTTATAAGGGATTTAGACTAGAC
*
78108120 TAGTAATCC
1 TGGTAATCC
78108129 TGCCGTAAGA
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 56 0.98
55 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.32
Consensus pattern (54 bp):
TGGTAATCCCGACATTACTCAGTGAGCTTATGTTATAAGGGATTTAGACTAGAC
Found at i:78109115 original size:13 final size:13
Alignment explanation
Indices: 78109097--78109128 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
78109087 GCCCCAAAGG
78109097 CGTGTGGTACGGC
1 CGTGTGGTACGGC
78109110 CGTGTGGTACGGC
1 CGTGTGGTACGGC
78109123 CGTGTG
1 CGTGTG
78109129 TCCCCTGCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.06, C:0.22, G:0.47, T:0.25
Consensus pattern (13 bp):
CGTGTGGTACGGC
Found at i:78109432 original size:20 final size:20
Alignment explanation
Indices: 78109404--78109447 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
78109394 TAAGGGACAG
78109404 GGGCATGTCCCAAAGCACAC
1 GGGCATGTCCCAAAGCACAC
*
78109424 GGGCGTGTCCCAAAGCACAC
1 GGGCATGTCCCAAAGCACAC
78109444 GGGC
1 GGGC
78109448 TTGTACATTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.25, C:0.34, G:0.32, T:0.09
Consensus pattern (20 bp):
GGGCATGTCCCAAAGCACAC
Found at i:78116692 original size:31 final size:31
Alignment explanation
Indices: 78116649--78116712 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
78116639 CCTTTTCATA
78116649 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
78116680 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
78116711 TT
1 TT
78116713 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:78117032 original size:23 final size:24
Alignment explanation
Indices: 78116924--78117047 Score: 214
Period size: 24 Copynumber: 5.2 Consensus size: 24
78116914 GGCCTAACCT
*
78116924 CTTTTAATAACTGGGGCAAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
78116948 CTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
78116972 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
78116996 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
78117020 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
78117043 CTTTT
1 CTTTT
78117048 GCACTTCCTC
Statistics
Matches: 96, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
23 22 0.23
24 74 0.77
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:78117119 original size:9 final size:9
Alignment explanation
Indices: 78117105--78117161 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
78117095 ATCTCATGTG
78117105 CATATCATA
1 CATATCATA
*
78117114 CATATCATGTG
1 CATATCA--TA
78117125 CATATCATA
1 CATATCATA
* *
78117134 CATGTCATGTG
1 CATATCA--TA
78117145 CATATCATA
1 CATATCATA
78117154 CATATCAT
1 CATATCAT
78117162 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:78117121 original size:20 final size:20
Alignment explanation
Indices: 78117093--78117163 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
78117083 GCATTTATGA
*
78117093 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
78117113 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
78117133 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
78117153 ACATATCATGT
1 ACATATCATGT
78117164 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:78117128 original size:11 final size:11
Alignment explanation
Indices: 78117098--78117152 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
78117088 TATGAACATC
78117098 TCATGTGCATA
1 TCATGTGCATA
*
78117109 TCA--TACATA
1 TCATGTGCATA
78117118 TCATGTGCATA
1 TCATGTGCATA
* *
78117129 TCA--TACATG
1 TCATGTGCATA
78117138 TCATGTGCATA
1 TCATGTGCATA
78117149 TCAT
1 TCAT
78117153 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:78119918 original size:57 final size:57
Alignment explanation
Indices: 78119781--78119937 Score: 192
Period size: 57 Copynumber: 2.8 Consensus size: 57
78119771 ATCATATAAC
* * ** *
78119781 AGGATTACCAGTTCAGGCTAAATCCTATCTCCAACATATGCTCACAAGAGCTTAATT
1 AGGATTACCAGTCCAGGCTAAATCCTTTCTGTAACATATGCTCACAAGAGCTCAATT
* * *
78119838 AGGATTACCAGCCCAAGCTAAATCCTTTCTGTAACATATGCTCAGAAGAGCTCAATT
1 AGGATTACCAGTCCAGGCTAAATCCTTTCTGTAACATATGCTCACAAGAGCTCAATT
**
78119895 AGGATTACCAGTCCAGGAAAAAT-CTTAAT-TGTAACATATGCTC
1 AGGATTACCAGTCCAGGCTAAATCCTT--TCTGTAACATATGCTC
78119938 GAGAGGGATT
Statistics
Matches: 86, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
56 3 0.03
57 82 0.95
58 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.27
Consensus pattern (57 bp):
AGGATTACCAGTCCAGGCTAAATCCTTTCTGTAACATATGCTCACAAGAGCTCAATT
Found at i:78119986 original size:58 final size:57
Alignment explanation
Indices: 78119781--78119986 Score: 182
Period size: 57 Copynumber: 3.6 Consensus size: 57
78119771 ATCATATAAC
* * ** * * *
78119781 AGGATTACCAGTTCAGGCTAAATCCTATCTCCAACATATGCTCACAAGAGCTTAATT
1 AGGATTACCAATCCAGGCTAAATCCTATCTGTAACATATGCTCAGAAGAGATCAATT
** * * *
78119838 AGGATTACCAGCCCAAGCTAAATCCTTTCTGTAACATATGCTCAGAAGAGCTCAATT
1 AGGATTACCAATCCAGGCTAAATCCTATCTGTAACATATGCTCAGAAGAGATCAATT
* ** * * *
78119895 AGGATTACCAGTCCAGGAAAAATCTTAAT-TGTAACATATGCTC-GAGAGGGATTATATT
1 AGGATTACCAATCCAGGCTAAATCCT-ATCTGTAACATATGCTCAGA-AGAGATCA-ATT
***
78119953 AGGATTACCAATTTGGGCTAAATCCTATCTGTAA
1 AGGATTACCAATCCAGGCTAAATCCTATCTGTAA
78119987 TGATGTCAAT
Statistics
Matches: 121, Mismatches: 24, Indels: 7
0.80 0.16 0.05
Matches are distributed among these distances:
56 2 0.02
57 91 0.75
58 28 0.23
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (57 bp):
AGGATTACCAATCCAGGCTAAATCCTATCTGTAACATATGCTCAGAAGAGATCAATT
Found at i:78120159 original size:8 final size:8
Alignment explanation
Indices: 78120146--78120171 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
78120136 TCTCATATAT
78120146 TTATGCAA
1 TTATGCAA
78120154 TTATGCAA
1 TTATGCAA
78120162 TTATGCAA
1 TTATGCAA
78120170 TT
1 TT
78120172 CAAATGTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.42
Consensus pattern (8 bp):
TTATGCAA
Found at i:78125860 original size:18 final size:18
Alignment explanation
Indices: 78125839--78125900 Score: 106
Period size: 18 Copynumber: 3.4 Consensus size: 18
78125829 GCATATAATG
*
78125839 CTTAGTAAGTCCGTATAA
1 CTTAGTAAGTCTGTATAA
78125857 CTTAGTAAGTCTGTATAA
1 CTTAGTAAGTCTGTATAA
78125875 CTTAGTAAGTCTGTATAA
1 CTTAGTAAGTCTGTATAA
*
78125893 CTTGGTAA
1 CTTAGTAA
78125901 TTAACTAACC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 42 1.00
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (18 bp):
CTTAGTAAGTCTGTATAA
Found at i:78126084 original size:141 final size:141
Alignment explanation
Indices: 78125908--78126189 Score: 528
Period size: 141 Copynumber: 2.0 Consensus size: 141
78125898 TAATTAACTA
78125908 ACCAACTATTCATATTAAAGATAAACATGTAAATCAGAATCAACCATTTGATCCCAAGCCCTAAC
1 ACCAACTATTCATATTAAAGATAAACATGTAAATCAGAATCAACCATTTGATCCCAAGCCCTAAC
78125973 ACATATTCTCATCACCCTTGTTAGTAACTGATTTTATATAAACATCAAGAAACACATATATGAGC
66 ACATATTCTCATCACCCTTGTTAGTAACTGATTTTATATAAACATCAAGAAACACATATATGAGC
78126038 CCAACAATATT
131 CCAACAATATT
* *
78126049 ACCAACTATTCATATTAAAGATAAACATGTAAATCAGTATCAACCATTTGATCCCAAGCCTTAAC
1 ACCAACTATTCATATTAAAGATAAACATGTAAATCAGAATCAACCATTTGATCCCAAGCCCTAAC
* *
78126114 ATATATTCTCATCACCCTTGTTAGTAACTTATTTTATATAAACATCAAGAAACACATATATGAGC
66 ACATATTCTCATCACCCTTGTTAGTAACTGATTTTATATAAACATCAAGAAACACATATATGAGC
78126179 CCAACAATATT
131 CCAACAATATT
78126190 CGGATTCTCA
Statistics
Matches: 137, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
141 137 1.00
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (141 bp):
ACCAACTATTCATATTAAAGATAAACATGTAAATCAGAATCAACCATTTGATCCCAAGCCCTAAC
ACATATTCTCATCACCCTTGTTAGTAACTGATTTTATATAAACATCAAGAAACACATATATGAGC
CCAACAATATT
Found at i:78137451 original size:13 final size:13
Alignment explanation
Indices: 78137433--78137458 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
78137423 ACGGAAATCC
78137433 AGTAATTTGCTAA
1 AGTAATTTGCTAA
78137446 AGTAATTTGCTAA
1 AGTAATTTGCTAA
78137459 CTTATGAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
AGTAATTTGCTAA
Found at i:78144300 original size:32 final size:32
Alignment explanation
Indices: 78144264--78144328 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
78144254 CCTTTTCATA
78144264 TTTCATAT-TCCATAACACTGGGCCGAAGCCTT
1 TTTCATATCT-CATAACACTGGGCCGAAGCCTT
** *
78144296 TTTCATATCTCATATTACTGGGCTGAAGCCTT
1 TTTCATATCTCATAACACTGGGCCGAAGCCTT
78144328 T
1 T
78144329 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 28 0.97
33 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (32 bp):
TTTCATATCTCATAACACTGGGCCGAAGCCTT
Found at i:78144671 original size:20 final size:20
Alignment explanation
Indices: 78144646--78144712 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
78144636 TTATGAATAC
78144646 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
78144666 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
78144686 GTCATGTGCATATCGTATCA-
1 ATCATGTGCATATCATA-CAT
78144706 ATCATGT
1 ATCATGT
78144713 ATATCAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Done.