Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 24 of 290
Found at i:7835086 original size:30 final size:30
Alignment explanation
Indices: 7835019--7835086 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
7835009 CACCCTTAAA
* * *
7835019 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
7835049 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
7835078 AGTATTTAC
1 A-TATTTAC
7835087 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:7837844 original size:46 final size:46
Alignment explanation
Indices: 7837784--7838057 Score: 460
Period size: 46 Copynumber: 6.0 Consensus size: 46
7837774 TTTGACATGA
* * * * * *
7837784 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
7837830 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
7837876 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
7837922 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
7837968 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
7838014 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATTTCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
7838058 AGAGCACACT
Statistics
Matches: 219, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
45 4 0.02
46 215 0.98
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:7855370 original size:17 final size:18
Alignment explanation
Indices: 7855348--7855389 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
7855338 CTAAATGGGC
7855348 CGTGTGGG-ACACACGGG
1 CGTGTGGGCACACACGGG
*
7855365 CGTGTGGGCACACATGGG
1 CGTGTGGGCACACACGGG
7855383 CGTGTGG
1 CGTGTGG
7855390 AATTTTGGGC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.14, C:0.21, G:0.48, T:0.17
Consensus pattern (18 bp):
CGTGTGGGCACACACGGG
Found at i:7857045 original size:15 final size:15
Alignment explanation
Indices: 7857025--7857058 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
7857015 AATTTCTTCA
7857025 AATTATTATTTAATC
1 AATTATTATTTAATC
7857040 AATTATTATTTAATC
1 AATTATTATTTAATC
7857055 AATT
1 AATT
7857059 GTAATTAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (15 bp):
AATTATTATTTAATC
Found at i:7857286 original size:18 final size:18
Alignment explanation
Indices: 7857263--7857304 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
7857253 TATTGAGTTA
7857263 GATAAATTATAAGTGTTG
1 GATAAATTATAAGTGTTG
7857281 GATAAATTATAAGTGTTG
1 GATAAATTATAAGTGTTG
7857299 GATAAA
1 GATAAA
7857305 ATTCCAGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.43, C:0.00, G:0.21, T:0.36
Consensus pattern (18 bp):
GATAAATTATAAGTGTTG
Found at i:7858679 original size:23 final size:24
Alignment explanation
Indices: 7858651--7858701 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
7858641 ATGAATTTAC
*
7858651 ATATTTTTA-ATTTATTAAATA-AT
1 ATATTTTTATATTT-TCAAATATAT
7858674 ATATTTTTATATTTTCAAATATAT
1 ATATTTTTATATTTTCAAATATAT
7858698 ATAT
1 ATAT
7858702 GTTATACCCC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 15 0.60
24 10 0.40
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (24 bp):
ATATTTTTATATTTTCAAATATAT
Found at i:7859929 original size:34 final size:34
Alignment explanation
Indices: 7859891--7859964 Score: 96
Period size: 34 Copynumber: 2.2 Consensus size: 34
7859881 TTTTAAAAAA
* *
7859891 AATTATTTTTA-TAATAATGTCAAAATTAAATTAT
1 AATTATTTTAACTAACAAT-TCAAAATTAAATTAT
**
7859925 AATTATTTTAACTAACAATTTTAAATTAAATTAT
1 AATTATTTTAACTAACAATTCAAAATTAAATTAT
7859959 AATTAT
1 AATTAT
7859965 AATTATCACT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 29 0.83
35 6 0.17
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.47
Consensus pattern (34 bp):
AATTATTTTAACTAACAATTCAAAATTAAATTAT
Found at i:7865366 original size:21 final size:21
Alignment explanation
Indices: 7865342--7865383 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7865332 TCATCAGATC
*
7865342 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
7865363 TACAGGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
7865384 AGATGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:7866848 original size:23 final size:23
Alignment explanation
Indices: 7866801--7866848 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
7866791 CGTCTCGATG
*
7866801 ATAAACATATCTCCGTTGACCAA
1 ATAAACATATCTCCGTCGACCAA
* * *
7866824 ATAAATATATCTTCGTCGACTAA
1 ATAAACATATCTCCGTCGACCAA
7866847 AT
1 AT
7866849 GAAAATGGTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (23 bp):
ATAAACATATCTCCGTCGACCAA
Found at i:7867623 original size:11 final size:11
Alignment explanation
Indices: 7867607--7867639 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
7867597 AAAATATAAA
7867607 TTTTATAAATT
1 TTTTATAAATT
*
7867618 TTTTATAAATA
1 TTTTATAAATT
7867629 TTTTA-AAATT
1 TTTTATAAATT
7867639 T
1 T
7867640 AAAATTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
10 5 0.25
11 15 0.75
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (11 bp):
TTTTATAAATT
Found at i:7867642 original size:7 final size:7
Alignment explanation
Indices: 7867630--7867654 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7867620 TTATAAATAT
7867630 TTTAAAA
1 TTTAAAA
7867637 TTTAAAA
1 TTTAAAA
7867644 TTTAAAA
1 TTTAAAA
7867651 TTTA
1 TTTA
7867655 TTTAAAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (7 bp):
TTTAAAA
Found at i:7867667 original size:36 final size:37
Alignment explanation
Indices: 7867584--7867668 Score: 104
Period size: 36 Copynumber: 2.3 Consensus size: 37
7867574 TTGATAAACT
*
7867584 TAAATTATTAATTAAAATATAAATTTTATAAATTTTTTA
1 TAAATTATT--TTAAAATATAAAATTTATAAATTTTTTA
*
7867623 TAAA-TATTTTAAAATTTAAAATTTA-AAATTTATTTA
1 TAAATTATTTTAAAATATAAAATTTATAAATTT-TTTA
7867659 -AAATTATTTT
1 TAAATTATTTT
7867669 GTAATTTTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
35 9 0.21
36 25 0.60
38 4 0.10
39 4 0.10
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (37 bp):
TAAATTATTTTAAAATATAAAATTTATAAATTTTTTA
Found at i:7868310 original size:19 final size:19
Alignment explanation
Indices: 7868288--7868329 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
7868278 TTTTTTTTAA
7868288 TTTTT-TTTAACTTTTGTC
1 TTTTTCTTTAACTTTTGTC
* *
7868306 TTTTTCTTTAATTTTTTTC
1 TTTTTCTTTAACTTTTGTC
7868325 TTTTT
1 TTTTT
7868330 GTAAGTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.10, C:0.10, G:0.02, T:0.79
Consensus pattern (19 bp):
TTTTTCTTTAACTTTTGTC
Found at i:7868347 original size:19 final size:16
Alignment explanation
Indices: 7868288--7868355 Score: 57
Period size: 17 Copynumber: 4.0 Consensus size: 16
7868278 TTTTTTTTAA
7868288 TTTTTTTTAACTTTTGTCT
1 TTTTTTTTAA-TTTT-T-T
*
7868307 TTTTCTTTAATTTTTT
1 TTTTTTTTAATTTTTT
* *
7868323 TCTTTTTGTAAGTTTTAT
1 T-TTTTTTTAA-TTTTTT
7868341 TTTTTTTT-ATTTTTT
1 TTTTTTTTAATTTTTT
7868356 AACAATGTAT
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
15 5 0.12
16 3 0.07
17 14 0.34
18 10 0.24
19 9 0.22
ACGTcount: A:0.12, C:0.06, G:0.04, T:0.78
Consensus pattern (16 bp):
TTTTTTTTAATTTTTT
Found at i:7868575 original size:14 final size:15
Alignment explanation
Indices: 7868556--7868588 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
7868546 ATCTTTAAAA
7868556 ATAATTTAAAA-ATT
1 ATAATTTAAAATATT
7868570 ATAATTTAAAATATT
1 ATAATTTAAAATATT
7868585 ATAA
1 ATAA
7868589 AACAAATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
ATAATTTAAAATATT
Found at i:7868691 original size:23 final size:22
Alignment explanation
Indices: 7868662--7868729 Score: 70
Period size: 22 Copynumber: 3.1 Consensus size: 22
7868652 AAAATATTTA
*
7868662 AATATTTTATACTATTTAAAATAT
1 AATATTTTA-A-TATTTAAAAAAT
7868686 -ATA-TTTAATATTTAAAAAAT
1 AATATTTTAATATTTAAAAAAT
*
7868706 AATA-TTTAAAATTTTAAAAAAT
1 AATATTTTAATA-TTTAAAAAAT
7868728 AA
1 AA
7868730 ATTCAAAAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
20 11 0.28
21 10 0.25
22 16 0.40
23 3 0.08
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.44
Consensus pattern (22 bp):
AATATTTTAATATTTAAAAAAT
Found at i:7868703 original size:21 final size:21
Alignment explanation
Indices: 7868674--7868803 Score: 70
Period size: 21 Copynumber: 5.9 Consensus size: 21
7868664 TATTTTATAC
7868674 TATTT-AAAATATATATTTAA
1 TATTTAAAAATATATATTTAA
7868694 TATTTAAAAA-ATAATATTTAA
1 TATTTAAAAATAT-ATATTTAA
* *
7868715 AATTTTAAAAA-ATAAATTCAAAAATATA
1 TA-TTTAAAAATATATATT------TA-A
* * * *
7868743 TATTTAAAATTTTAAAATTAA
1 TATTTAAAAATATATATTTAA
7868764 TATTTAAAAATA-ATATTTAAA
1 TATTTAAAAATATATATTT-AA
*
7868785 AATTTTAAAAATATATATT
1 TA-TTTAAAAATATATATT
7868804 ATAAAACATT
Statistics
Matches: 85, Mismatches: 11, Indels: 25
0.70 0.09 0.21
Matches are distributed among these distances:
20 11 0.13
21 31 0.36
22 22 0.26
23 5 0.06
27 9 0.11
28 7 0.08
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (21 bp):
TATTTAAAAATATATATTTAA
Found at i:7868704 original size:22 final size:22
Alignment explanation
Indices: 7868679--7868737 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 22
7868669 TATACTATTT
*
7868679 AAAATATATATTTAATA-TTTAA
1 AAAATA-ATATTTAAAATTTTAA
7868701 AAAATAATATTTAAAATTTTAA
1 AAAATAATATTTAAAATTTTAA
*
7868723 AAAATAA-ATTCAAAA
1 AAAATAATATTTAAAA
7868738 ATATATATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 16 0.47
22 18 0.53
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (22 bp):
AAAATAATATTTAAAATTTTAA
Found at i:7868710 original size:14 final size:13
Alignment explanation
Indices: 7868691--7868787 Score: 79
Period size: 13 Copynumber: 8.1 Consensus size: 13
7868681 AATATATATT
7868691 TAATATTTAAAAAA
1 TAATATTT-AAAAA
7868705 TAATATTT-AAAA
1 TAATATTTAAAAA
*
7868717 T--T-TTAAAAAA
1 TAATATTTAAAAA
*
7868727 TAA-ATTCAAAAA
1 TAATATTTAAAAA
7868739 TATATATTT---AA
1 TA-ATATTTAAAAA
*
7868750 -AAT-TTTAAAAT
1 TAATATTTAAAAA
7868761 TAATATTTAAAAA
1 TAATATTTAAAAA
7868774 TAATATTTAAAAA
1 TAATATTTAAAAA
7868787 T
1 T
7868788 TTTAAAAATA
Statistics
Matches: 67, Mismatches: 5, Indels: 23
0.71 0.05 0.24
Matches are distributed among these distances:
8 3 0.04
9 4 0.06
10 7 0.10
11 3 0.04
12 17 0.25
13 22 0.33
14 11 0.16
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (13 bp):
TAATATTTAAAAA
Found at i:7868717 original size:34 final size:32
Alignment explanation
Indices: 7868674--7868785 Score: 107
Period size: 34 Copynumber: 3.3 Consensus size: 32
7868664 TATTTTATAC
*
7868674 TATTTAAAATATATATTTAATATTTAAAAAATAA
1 TATTTAAAAT-TATAATTAATATTT-AAAAATAA
* ** *
7868708 TATTTAAAATTTTAAAAAATAAATTCAAAAATATA
1 TATTTAAAATTATAATTAAT--ATTTAAAAATA-A
*
7868743 TATTTAAAATTTTAAAATTAATATTTAAAAATAA
1 TATTTAAAA--TTATAATTAATATTTAAAAATAA
7868777 TATTTAAAA
1 TATTTAAAA
7868786 ATTTTAAAAA
Statistics
Matches: 63, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
33 6 0.10
34 27 0.43
35 23 0.37
37 7 0.11
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (32 bp):
TATTTAAAATTATAATTAATATTTAAAAATAA
Found at i:7868738 original size:22 final size:22
Alignment explanation
Indices: 7868679--7868809 Score: 65
Period size: 22 Copynumber: 5.7 Consensus size: 22
7868669 TATACTATTT
* *
7868679 AAAATATATATTTAATA-TTTAA
1 AAAATA-ATATTAAAAATTTTAA
*
7868701 AAAATAATATTTAAAATTTTAA
1 AAAATAATATTAAAAATTTTAA
* *
7868723 AAAATAA-ATTCAAAAATATATAT
1 AAAATAATATT-AAAAAT-TTTAA
** *
7868746 TTAA-AATTTTAAAATTAATATTT-A
1 AAAATAATATT-AAA--AAT-TTTAA
7868770 AAAATAATATTTAAAAATTTT-A
1 AAAATAATA-TTAAAAATTTTAA
7868792 AAAATATATATTATAAAA
1 AAAATA-ATATTA-AAAA
7868810 CATTTCAAAT
Statistics
Matches: 86, Mismatches: 13, Indels: 19
0.73 0.11 0.16
Matches are distributed among these distances:
21 12 0.14
22 38 0.44
23 20 0.23
24 2 0.02
25 12 0.14
26 2 0.02
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (22 bp):
AAAATAATATTAAAAATTTTAA
Found at i:7868746 original size:35 final size:35
Alignment explanation
Indices: 7868691--7868803 Score: 142
Period size: 35 Copynumber: 3.2 Consensus size: 35
7868681 AATATATATT
*
7868691 TAATATTTAAAAAATAATATTTAAAATTTTAAAAAA
1 TAATA-TTCAAAAATAATATTTAAAATTTTAAAAAA
*
7868727 TAA-ATTCAAAAATATATATTTAAAATTTT-AAAAT
1 TAATATTCAAAAATA-ATATTTAAAATTTTAAAAAA
*
7868761 TAATATTTAAAAATAATATTTAAAAATTTT-AAAAA
1 TAATATTCAAAAATAATATTT-AAAATTTTAAAAAA
7868796 TATATATT
1 TA-ATATT
7868804 ATAAAACATT
Statistics
Matches: 69, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
34 22 0.32
35 39 0.57
36 8 0.12
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.42
Consensus pattern (35 bp):
TAATATTCAAAAATAATATTTAAAATTTTAAAAAA
Found at i:7868788 original size:56 final size:57
Alignment explanation
Indices: 7868679--7868809 Score: 149
Period size: 56 Copynumber: 2.3 Consensus size: 57
7868669 TATACTATTT
* **
7868679 AAAATATATATTTAATATTTAAAAAATAATATTTAAAATTTTAAAAAATAAA-TTCA
1 AAAATATATATTTAAAATTTAAAAAATAATATTTAAAATAATAAAAAATAAATTTCA
* * *** *
7868735 AAAATATATATTTAAAATTTTAAAATTAATATTTAAAAATAATATTTAA-AAATTTTA
1 AAAATATATATTTAAAATTTAAAAAATAATATTT-AAAATAATAAAAAATAAATTTCA
7868792 AAAATATATATTATAAAA
1 AAAATATATATT-TAAAA
7868810 CATTTCAAAT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
56 34 0.54
57 24 0.38
58 5 0.08
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (57 bp):
AAAATATATATTTAAAATTTAAAAAATAATATTTAAAATAATAAAAAATAAATTTCA
Found at i:7868802 original size:23 final size:23
Alignment explanation
Indices: 7868679--7868842 Score: 87
Period size: 23 Copynumber: 7.2 Consensus size: 23
7868669 TATACTATTT
* *
7868679 AAAATATATATTT-AATATTTAA
1 AAAATATATATTTAAAAATTTTA
7868701 AAAATA-ATATTT-AAAATTTTA
1 AAAATATATATTTAAAAATTTTA
* * *
7868722 AAAA-ATAAATTCAAAAATATATATT
1 AAAATATATATTTAAAAAT-T-T-TA
* *
7868747 TAAA-AT-T-TTAAAATTAATATTTA
1 AAAATATATATTTAAA--AAT-TTTA
7868770 AAAATA-ATATTTAAAAATTTTA
1 AAAATATATATTTAAAAATTTTA
7868792 AAAATATATATTATAAAACA-TTT-
1 AAAATATATATT-TAAAA-ATTTTA
* * * *
7868815 CAAATATATATTTCAAATTTTTT
1 AAAATATATATTTAAAAATTTTA
7868838 AAAAT
1 AAAAT
7868843 TAATAACAAA
Statistics
Matches: 112, Mismatches: 15, Indels: 29
0.72 0.10 0.19
Matches are distributed among these distances:
20 1 0.01
21 21 0.19
22 28 0.25
23 33 0.29
24 12 0.11
25 17 0.15
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.42
Consensus pattern (23 bp):
AAAATATATATTTAAAAATTTTA
Found at i:7868823 original size:25 final size:23
Alignment explanation
Indices: 7868765--7868825 Score: 72
Period size: 25 Copynumber: 2.7 Consensus size: 23
7868755 TAAAATTAAT
7868765 ATTT-AAAAATA-ATATTTAAAA
1 ATTTCAAAAATATATATTTAAAA
*
7868786 ATTTTAAAAATATATATTATAAAA
1 ATTTCAAAAATATATATT-TAAAA
*
7868810 CATTTCAAATATATAT
1 -ATTTCAAAAATATAT
7868826 TTCAAATTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 4 0.12
22 7 0.21
23 5 0.15
24 5 0.15
25 13 0.38
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (23 bp):
ATTTCAAAAATATATATTTAAAA
Found at i:7868867 original size:9 final size:9
Alignment explanation
Indices: 7868837--7868891 Score: 51
Period size: 9 Copynumber: 6.0 Consensus size: 9
7868827 TCAAATTTTT
*
7868837 TAAAATTAA
1 TAAAATAAA
*
7868846 TAACAAAAAA
1 TAA-AATAAA
7868856 TAAAATAAA
1 TAAAATAAA
7868865 TAAACA-AAA
1 TAAA-ATAAA
7868874 TAAACA-AAA
1 TAAA-ATAAA
7868883 TAAAATAAA
1 TAAAATAAA
7868892 ATAAGACAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
8 1 0.03
9 31 0.77
10 8 0.20
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.18
Consensus pattern (9 bp):
TAAAATAAA
Found at i:7868875 original size:18 final size:18
Alignment explanation
Indices: 7868837--7868895 Score: 66
Period size: 19 Copynumber: 3.2 Consensus size: 18
7868827 TCAAATTTTT
*
7868837 TAAAATTAATAACAAAAAA
1 TAAAATAAATAA-AAAAAA
*
7868856 TAAAATAAATAAACAAAA
1 TAAAATAAATAAAAAAAA
7868874 TAAACA-AAATAAAATAAAA
1 TAAA-ATAAATAAAA-AAAA
7868893 TAA
1 TAA
7868896 GACAAAAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
18 16 0.46
19 19 0.54
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.19
Consensus pattern (18 bp):
TAAAATAAATAAAAAAAA
Found at i:7868902 original size:10 final size:9
Alignment explanation
Indices: 7868852--7868902 Score: 59
Period size: 9 Copynumber: 5.4 Consensus size: 9
7868842 TTAATAACAA
7868852 AAAATAAA-
1 AAAATAAAC
7868860 ATAAATAAAC
1 A-AAATAAAC
7868870 AAAATAAAC
1 AAAATAAAC
*
7868879 AAAATAAAAT
1 AAAAT-AAAC
7868889 AAAATAAGAC
1 AAAATAA-AC
7868899 AAAA
1 AAAA
7868903 ATTAGAGAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
8 1 0.03
9 22 0.59
10 14 0.38
ACGTcount: A:0.78, C:0.06, G:0.02, T:0.14
Consensus pattern (9 bp):
AAAATAAAC
Found at i:7870351 original size:40 final size:40
Alignment explanation
Indices: 7870307--7870386 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
7870297 ATATCACTGA
*
7870307 ACATCTTCAATACACCATTAATCAAACCAATCAATTGAAT
1 ACATCTTCAATACACCATTAATAAAACCAATCAATTGAAT
* * **
7870347 ACATCTTCAATGCACTATTAATAAAATTAATCAATTGAAT
1 ACATCTTCAATACACCATTAATAAAACCAATCAATTGAAT
7870387 CAATTAAATT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.45, C:0.20, G:0.04, T:0.31
Consensus pattern (40 bp):
ACATCTTCAATACACCATTAATAAAACCAATCAATTGAAT
Found at i:7877578 original size:12 final size:12
Alignment explanation
Indices: 7877561--7877585 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7877551 AAAAGAACAT
7877561 AGGTTTACTTAC
1 AGGTTTACTTAC
7877573 AGGTTTACTTAC
1 AGGTTTACTTAC
7877585 A
1 A
7877586 TATTACAGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (12 bp):
AGGTTTACTTAC
Found at i:7877762 original size:29 final size:27
Alignment explanation
Indices: 7877730--7877787 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
7877720 ATGGAGGATT
* *
7877730 TTTTTATCTAATAAAATTAGATAAATTAA
1 TTTTTATAT-ATAAAATTA-AAAAATTAA
*
7877759 TTTTTATATATTAAATTAAAAAATTAA
1 TTTTTATATATAAAATTAAAAAATTAA
7877786 TT
1 TT
7877788 AGTTGTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 10 0.38
28 8 0.31
29 8 0.31
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (27 bp):
TTTTTATATATAAAATTAAAAAATTAA
Found at i:7877932 original size:26 final size:27
Alignment explanation
Indices: 7877903--7877960 Score: 77
Period size: 26 Copynumber: 2.2 Consensus size: 27
7877893 TTATTTATTT
*
7877903 TAATTTTTTAAT-AGTAAAA-ATAAATA
1 TAATTTTTTAATAAATAAAACA-AAATA
7877929 TAA-TTTTTAATAAATAAAACAAAATA
1 TAATTTTTTAATAAATAAAACAAAATA
7877955 TAATTT
1 TAATTT
7877961 CACTCGTAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
25 8 0.29
26 17 0.61
27 3 0.11
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (27 bp):
TAATTTTTTAATAAATAAAACAAAATA
Found at i:7878698 original size:3 final size:3
Alignment explanation
Indices: 7878692--7878723 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
7878682 AAAGAAAACA
*
7878692 CAG CAG CAG CAG CAG CAG CAG CAG CAG GAG CA
1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CA
7878724 AGAAAAGAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.34, C:0.31, G:0.34, T:0.00
Consensus pattern (3 bp):
CAG
Found at i:7878740 original size:9 final size:8
Alignment explanation
Indices: 7878723--7878756 Score: 50
Period size: 9 Copynumber: 4.0 Consensus size: 8
7878713 CAGCAGGAGC
7878723 AAGAAAAG
1 AAGAAAAG
7878731 AAGAAGAAG
1 AAGAA-AAG
7878740 AAGAAAAAG
1 AAG-AAAAG
7878749 AAGAAAAG
1 AAGAAAAG
7878757 TAGTAAACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 10 0.42
9 12 0.50
10 2 0.08
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (8 bp):
AAGAAAAG
Found at i:7882694 original size:24 final size:20
Alignment explanation
Indices: 7882648--7882713 Score: 78
Period size: 22 Copynumber: 3.1 Consensus size: 20
7882638 TTAACAAAAG
*
7882648 AAATTGTTTTTAAGATTTTT
1 AAATTATTTTTAAGATTTTT
7882668 AAATATTATTTTTCAAGAATTTTT
1 -AA-ATTATTTTT-AAG-ATTTTT
*
7882692 AAATTATTTTTAATATTTTT
1 AAATTATTTTTAAGATTTTT
7882712 AA
1 AA
7882714 TTTAAATTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
20 8 0.20
21 4 0.10
22 17 0.43
23 5 0.12
24 6 0.15
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.58
Consensus pattern (20 bp):
AAATTATTTTTAAGATTTTT
Found at i:7882700 original size:11 final size:11
Alignment explanation
Indices: 7882662--7882727 Score: 51
Period size: 11 Copynumber: 5.5 Consensus size: 11
7882652 TGTTTTTAAG
7882662 ATTTTTAAATATT
1 ATTTTT-AA-ATT
* **
7882675 ATTTTTCAAGA
1 ATTTTTAAATT
7882686 ATTTTTAAATT
1 ATTTTTAAATT
7882697 ATTTTTAATATT
1 ATTTTTAA-ATT
*
7882709 TTTAATTTAAATT
1 ATT--TTTAAATT
7882722 ATTTTT
1 ATTTTT
7882728 TTTCATTTTA
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
11 20 0.48
12 6 0.14
13 11 0.26
14 5 0.12
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (11 bp):
ATTTTTAAATT
Found at i:7882736 original size:25 final size:25
Alignment explanation
Indices: 7882689--7882758 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
7882679 TTCAAGAATT
**
7882689 TTTAAATTATTTTTAATATTTTTAA
1 TTTAAATTATTTTTTTTATTTTTAA
7882714 TTTAAATTATTTTTTTTCA-TTTTAA
1 TTTAAATTATTTTTTTT-ATTTTTAA
* *
7882739 TATAAAATATTTATTTTTAT
1 TTTAAATTATTT-TTTTTAT
7882759 ATCATAAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
25 32 0.84
26 6 0.16
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.64
Consensus pattern (25 bp):
TTTAAATTATTTTTTTTATTTTTAA
Found at i:7883428 original size:36 final size:36
Alignment explanation
Indices: 7883379--7883455 Score: 136
Period size: 36 Copynumber: 2.1 Consensus size: 36
7883369 AACAACACAA
*
7883379 AAATTTAACGAGAATTTATAAAGTATATATTGTAAG
1 AAATTTAACGAGAATTTACAAAGTATATATTGTAAG
*
7883415 AAATTTAATGAGAATTTACAAAGTATATATTGTAAG
1 AAATTTAACGAGAATTTACAAAGTATATATTGTAAG
7883451 AAATT
1 AAATT
7883456 ATGTAATAGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.48, C:0.03, G:0.13, T:0.36
Consensus pattern (36 bp):
AAATTTAACGAGAATTTACAAAGTATATATTGTAAG
Found at i:7884417 original size:5 final size:5
Alignment explanation
Indices: 7884407--7884449 Score: 68
Period size: 5 Copynumber: 8.4 Consensus size: 5
7884397 ACGTGTGAAA
*
7884407 AAAAT AAAAT AAAAT AAAAT AAAAT AAAGAA AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA-AT AAAAT AAAAT AA
7884450 CACACAAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
5 31 0.89
6 4 0.11
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:7888881 original size:5 final size:5
Alignment explanation
Indices: 7888871--7888908 Score: 58
Period size: 5 Copynumber: 7.4 Consensus size: 5
7888861 ATTTGTGAAA
*
7888871 AAAAT AAAAT AAAAT AAAAT AAAGAA AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAA-AT AAAAT AAAAT AA
7888909 CACACAAGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 26 0.87
6 4 0.13
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:7890152 original size:23 final size:22
Alignment explanation
Indices: 7890125--7890196 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 22
7890115 TAAGGAACAA
7890125 GAAATTATCTCATGAGGGATTAC
1 GAAATTATC-CATGAGGGATTAC
* ** *
7890148 GAAATGATCCACCAAGGGATTAG
1 GAAATTATCCA-TGAGGGATTAC
* *
7890171 GGAATTATCCCTTGAGGGATT-C
1 GAAATTAT-CCATGAGGGATTAC
7890193 GAAA
1 GAAA
7890197 ATGATCTATG
Statistics
Matches: 36, Mismatches: 11, Indels: 5
0.69 0.21 0.10
Matches are distributed among these distances:
22 5 0.14
23 29 0.81
24 2 0.06
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (22 bp):
GAAATTATCCATGAGGGATTAC
Found at i:7890258 original size:23 final size:23
Alignment explanation
Indices: 7890232--7890306 Score: 80
Period size: 23 Copynumber: 3.2 Consensus size: 23
7890222 GCCCCTTAAA
7890232 GGATTAGGAAATGATCTCTTGAG
1 GGATTAGGAAATGATCTCTTGAG
* * **
7890255 GGATTTACGG-ATTTATCTCCCGAG
1 GGA-TTA-GGAAATGATCTCTTGAG
*
7890279 GGATTAGGAAATGATCCCTTGAG
1 GGATTAGGAAATGATCTCTTGAG
7890302 GGATT
1 GGATT
7890307 GAAAATATTT
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
22 2 0.05
23 20 0.50
24 16 0.40
25 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (23 bp):
GGATTAGGAAATGATCTCTTGAG
Found at i:7900719 original size:13 final size:13
Alignment explanation
Indices: 7900701--7900761 Score: 86
Period size: 13 Copynumber: 4.7 Consensus size: 13
7900691 AGTTATTCAT
7900701 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
*
7900714 TGCTTTTCAGAAG
1 TGCTTTTGAGAAG
*
7900727 TACTTTTGAGAAG
1 TGCTTTTGAGAAG
* *
7900740 TGTTTTTCAGAAG
1 TGCTTTTGAGAAG
7900753 TGCTTTTGA
1 TGCTTTTGA
7900762 AAAATTTGAG
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 40 1.00
ACGTcount: A:0.23, C:0.10, G:0.25, T:0.43
Consensus pattern (13 bp):
TGCTTTTGAGAAG
Found at i:7900732 original size:26 final size:26
Alignment explanation
Indices: 7900703--7900761 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 26
7900693 TTATTCATTG
7900703 CTTTTGAGAAGTGCTTTTCAGAAGTA
1 CTTTTGAGAAGTGCTTTTCAGAAGTA
* *
7900729 CTTTTGAGAAGTGTTTTTCAGAAGTG
1 CTTTTGAGAAGTGCTTTTCAGAAGTA
7900755 CTTTTGA
1 CTTTTGA
7900762 AAAATTTGAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.24, C:0.10, G:0.24, T:0.42
Consensus pattern (26 bp):
CTTTTGAGAAGTGCTTTTCAGAAGTA
Found at i:7904587 original size:95 final size:94
Alignment explanation
Indices: 7904477--7904667 Score: 319
Period size: 95 Copynumber: 2.0 Consensus size: 94
7904467 CACCATTTAA
*
7904477 AATATTGTACACCAACTAGTACATTAGTTAAAATTTACCAACTTTAAACTTAATTTTATTTATTT
1 AATATTGTACACCAACTAGTACATTAGTTAAAATTTACCAACTTTAAACTTAATTTTATATATTT
7904542 TAAAATAAAAAAACTAATAAATAATAAAAG
66 TAAAAT-AAAAAACTAATAAATAATAAAAG
* * * *
7904572 AATATTGTGCACCAACTCGTACATTATTTAAAGTTTACCAACTTTAAACTTAATTTTATATATTT
1 AATATTGTACACCAACTAGTACATTAGTTAAAATTTACCAACTTTAAACTTAATTTTATATATTT
*
7904637 TAAAATAAAAAATTAATAAATAATAAAAG
66 TAAAATAAAAAACTAATAAATAATAAAAG
7904666 AA
1 AA
7904668 GTGTTGGGTT
Statistics
Matches: 90, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
94 24 0.27
95 66 0.73
ACGTcount: A:0.49, C:0.10, G:0.05, T:0.36
Consensus pattern (94 bp):
AATATTGTACACCAACTAGTACATTAGTTAAAATTTACCAACTTTAAACTTAATTTTATATATTT
TAAAATAAAAAACTAATAAATAATAAAAG
Found at i:7909181 original size:43 final size:43
Alignment explanation
Indices: 7909120--7909213 Score: 179
Period size: 43 Copynumber: 2.2 Consensus size: 43
7909110 GAGCTACTGC
*
7909120 CAAAATTCCGTAAACCCTTTTGGCTCTCCTTGAAATCAGAAGA
1 CAAAAATCCGTAAACCCTTTTGGCTCTCCTTGAAATCAGAAGA
7909163 CAAAAATCCGTAAACCCTTTTGGCTCTCCTTGAAATCAGAAGA
1 CAAAAATCCGTAAACCCTTTTGGCTCTCCTTGAAATCAGAAGA
7909206 CAAAAATC
1 CAAAAATC
7909214 GAGTGTAGAC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.36, C:0.26, G:0.13, T:0.26
Consensus pattern (43 bp):
CAAAAATCCGTAAACCCTTTTGGCTCTCCTTGAAATCAGAAGA
Found at i:7913398 original size:17 final size:16
Alignment explanation
Indices: 7913371--7913405 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
7913361 TCCCAGAATA
*
7913371 TTTGTTTGTTTTTTCT
1 TTTGTTTGTTTATTCT
7913387 TTTGTATTGTTTATTCT
1 TTTGT-TTGTTTATTCT
7913404 TT
1 TT
7913406 CACATTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.06, C:0.06, G:0.11, T:0.77
Consensus pattern (16 bp):
TTTGTTTGTTTATTCT
Found at i:7917790 original size:23 final size:24
Alignment explanation
Indices: 7917749--7917795 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
7917739 ATAAAATAAT
*
7917749 AAATTTACTTTTAATGTGCTCGAA
1 AAATTTACTTTTAACGTGCTCGAA
7917773 AAATTTAC-TTTAACGTGCTCGAA
1 AAATTTACTTTTAACGTGCTCGAA
7917796 TCCTTAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (24 bp):
AAATTTACTTTTAACGTGCTCGAA
Found at i:7926270 original size:16 final size:17
Alignment explanation
Indices: 7926243--7926288 Score: 53
Period size: 16 Copynumber: 2.8 Consensus size: 17
7926233 TTATTATTAT
7926243 TATTACTATTATTTATT-
1 TATTACT-TTATTTATTG
7926260 TATTTA-TTTA-TTATTG
1 TA-TTACTTTATTTATTG
7926276 TATTACTTTATTT
1 TATTACTTTATTT
7926289 TAAAATTCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
15 8 0.32
16 9 0.36
17 5 0.20
18 3 0.12
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.67
Consensus pattern (17 bp):
TATTACTTTATTTATTG
Found at i:7926329 original size:18 final size:19
Alignment explanation
Indices: 7926296--7926332 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
7926286 TTTTAAAATT
*
7926296 CATATTGTTCATATTTTCA
1 CATATTATTCATATTTTCA
7926315 CATATTATT-ATATTTTCA
1 CATATTATTCATATTTTCA
7926333 TTATTATCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.30, C:0.14, G:0.03, T:0.54
Consensus pattern (19 bp):
CATATTATTCATATTTTCA
Found at i:7926391 original size:30 final size:27
Alignment explanation
Indices: 7926333--7926391 Score: 64
Period size: 30 Copynumber: 2.1 Consensus size: 27
7926323 TATATTTTCA
**
7926333 TTATTATCCTTTTTATTTCTTGTTATT
1 TTATTATCCTTTTTATTTCTTGGCATT
*
7926360 TTATTATTCCTTTTATTATTTTTTGGCATT
1 TTATTA-TCC-TTT-TTATTTCTTGGCATT
7926390 TT
1 TT
7926392 TCAAATCGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
27 6 0.23
28 3 0.12
29 3 0.12
30 14 0.54
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (27 bp):
TTATTATCCTTTTTATTTCTTGGCATT
Found at i:7934309 original size:23 final size:23
Alignment explanation
Indices: 7934262--7934395 Score: 124
Period size: 23 Copynumber: 5.7 Consensus size: 23
7934252 ATATATCAAA
*
7934262 TCGTAAGAGCTTACTGTTTTCAGC
1 TCGTTAGAGCTTACTG-TTTCAGC
7934286 TCGTTAGAGCTTACTGTTTCAGC
1 TCGTTAGAGCTTACTGTTTCAGC
* *
7934309 TCGTTGGAGCTTACTGTTTTAGC
1 TCGTTAGAGCTTACTGTTTCAGC
** * * *
7934332 TTATAAAAGCTTATTGTTTTCAGC
1 TCGTTAGAGCTTACTG-TTTCAGC
* * *
7934356 TCGTCAGAGCTTACCGTTTGAGC
1 TCGTTAGAGCTTACTGTTTCAGC
***
7934379 TTAATAGAGCTTACTGT
1 TCGTTAGAGCTTACTGT
7934396 CCATCAACTC
Statistics
Matches: 87, Mismatches: 22, Indels: 3
0.78 0.20 0.03
Matches are distributed among these distances:
23 56 0.64
24 31 0.36
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.40
Consensus pattern (23 bp):
TCGTTAGAGCTTACTGTTTCAGC
Found at i:7934328 original size:47 final size:47
Alignment explanation
Indices: 7934262--7934395 Score: 130
Period size: 47 Copynumber: 2.9 Consensus size: 47
7934252 ATATATCAAA
* * * *
7934262 TCGTAAGAGCTTACTGTTTTCAGCTCGTTAGAGCTTACTG-TTTCAGC
1 TCGTCAGAGCTTACTGTTTT-AGCTCATAAAAGCTTACTGTTTTCAGC
** * *
7934309 TCGTTGGAGCTTACTGTTTTAGCTTATAAAAGCTTATTGTTTTCAGC
1 TCGTCAGAGCTTACTGTTTTAGCTCATAAAAGCTTACTGTTTTCAGC
* *
7934356 TCGTCAGAGCTTACCGTTTGAGCT--TAATAGAGCTTACTGT
1 TCGTCAGAGCTTACTGTTTTAGCTCATAA-A-AGCTTACTGT
7934396 CCATCAACTC
Statistics
Matches: 72, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
45 3 0.04
46 15 0.21
47 54 0.75
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.40
Consensus pattern (47 bp):
TCGTCAGAGCTTACTGTTTTAGCTCATAAAAGCTTACTGTTTTCAGC
Found at i:7937365 original size:17 final size:18
Alignment explanation
Indices: 7937335--7937376 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 18
7937325 AGCCCATTAC
7937335 AAACCCAAACCTAA-ATT
1 AAACCCAAACCTAACATT
7937352 AAACCC-AACTCTAATCATT
1 AAACCCAAAC-CTAA-CATT
7937371 AAACCC
1 AAACCC
7937377 TAAGACCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 3 0.14
17 10 0.45
19 9 0.41
ACGTcount: A:0.48, C:0.33, G:0.00, T:0.19
Consensus pattern (18 bp):
AAACCCAAACCTAACATT
Found at i:7938646 original size:25 final size:26
Alignment explanation
Indices: 7938618--7938670 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
7938608 TCCATGTTAT
7938618 TTTATAT-T-TATTTCTTTTAAATCTA
1 TTTATATGTATATTT-TTTTAAATCTA
7938643 TTTATATGTATATTTTTTTAAATCTA
1 TTTATATGTATATTTTTTTAAATCTA
7938669 TT
1 TT
7938671 ATGTATATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
25 7 0.27
26 14 0.54
27 5 0.19
ACGTcount: A:0.28, C:0.06, G:0.02, T:0.64
Consensus pattern (26 bp):
TTTATATGTATATTTTTTTAAATCTA
Found at i:7938679 original size:25 final size:27
Alignment explanation
Indices: 7938615--7938679 Score: 82
Period size: 26 Copynumber: 2.5 Consensus size: 27
7938605 AATTCCATGT
*
7938615 TATTT-TATATTTATTTCTTTTAAATC
1 TATTTATATATATATTTCTTTTAAATC
*
7938641 TATTTATATGTATATTT-TTTTAAATC
1 TATTTATATATATATTTCTTTTAAATC
*
7938667 TA-TTATGTATATA
1 TATTTATATATATA
7938680 ATTCATTCCT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
25 9 0.26
26 16 0.47
27 9 0.26
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.62
Consensus pattern (27 bp):
TATTTATATATATATTTCTTTTAAATC
Found at i:7947424 original size:45 final size:45
Alignment explanation
Indices: 7947218--7947674 Score: 250
Period size: 45 Copynumber: 10.1 Consensus size: 45
7947208 GTCATCGTAG
* * **
7947218 CAAATATTATCTCCCTAAAGTTGCAGTGGAGCATATT-AAAGCCA
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAAGTTA
* * * * *
7947262 CAAGTCTTATCTCCCTAAAGTTGCAATAGAGCAGACTG-AAGATA
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAAGTTA
** * * * * * * *
7947306 GTGAATCTTATTTCCCTGAAGTTGTAGTGAAACAAATTAAGGCTACAAATTA
1 -CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATT---G--A-AAGTTA
* * * *
7947358 CAAATCTGATCACCTTGAAGTTGCAGTGGAGCAGATTGAAAGTTA
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAAGTTA
* * * ** *
7947403 CAGAT-TTGATCTCCCTAAAGTTGCATTAGATTAGATT-AAAGATA
1 CAAATCTT-ATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAAGTTA
* ** * *
7947447 TCAAATCTTATCTCTCTGAAA-TTGCAGCAGAGTAGAGT-AAAGTTA
1 -CAAATCTTATCTCCCT-AAAGTTGCAGTGGAGCAGATTGAAAGTTA
* * * * * *
7947492 TAAACCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTG-AATTTA
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAAGTTA
* * * * * * *
7947536 CAAGTCTTACCTCCCTGAAGTTGTAGTGGAGTACATTG-AAGATA
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAAGTTA
* *
7947580 GTAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTG-AAGATA
1 -CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAAGTTA
* * * * * *
7947625 GCGAACCTTATTTCCCTGAAGTTGCAGTGGAACAGATT-AAAGCTA
1 -CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAAGTTA
7947670 CAAAT
1 CAAAT
7947675 TATAAATCTT
Statistics
Matches: 308, Mismatches: 88, Indels: 34
0.72 0.20 0.08
Matches are distributed among these distances:
43 2 0.01
44 107 0.35
45 160 0.52
46 6 0.02
48 2 0.01
51 27 0.09
52 4 0.01
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.29
Consensus pattern (45 bp):
CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAAGTTA
Found at i:7966096 original size:10 final size:10
Alignment explanation
Indices: 7966059--7966095 Score: 51
Period size: 9 Copynumber: 3.9 Consensus size: 10
7966049 TGGACTTTAA
7966059 TTTTATTTT-
1 TTTTATTTTG
7966068 TTTTATTTTG
1 TTTTATTTTG
*
7966078 ATTTATTTTG
1 TTTTATTTTG
7966088 TTTT-TTTT
1 TTTTATTTT
7966096 TTTGGTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 13 0.52
10 12 0.48
ACGTcount: A:0.11, C:0.00, G:0.05, T:0.84
Consensus pattern (10 bp):
TTTTATTTTG
Found at i:7967668 original size:9 final size:9
Alignment explanation
Indices: 7967660--7967692 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
7967650 ACCAAGTTAT
7967660 TTTTTTTA-
1 TTTTTTTAC
7967668 -TTTTTTAC
1 TTTTTTTAC
7967676 TTTTTTTAC
1 TTTTTTTAC
7967685 TTTTTTTA
1 TTTTTTTA
7967693 TCGAACCAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
7 7 0.30
9 16 0.70
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.82
Consensus pattern (9 bp):
TTTTTTTAC
Found at i:7969280 original size:15 final size:15
Alignment explanation
Indices: 7969260--7969289 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
7969250 GAAATAACTT
7969260 GTTTGTTATTTTTTA
1 GTTTGTTATTTTTTA
7969275 GTTTGTTATTTTTTA
1 GTTTGTTATTTTTTA
7969290 AGTAAAGGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.00, G:0.13, T:0.73
Consensus pattern (15 bp):
GTTTGTTATTTTTTA
Found at i:7973748 original size:21 final size:21
Alignment explanation
Indices: 7973711--7973750 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7973701 ATGTTGACCG
*
7973711 AGCATTGACTGATCATTGACT
1 AGCATTGACTCATCATTGACT
7973732 AGCATTGAC-CATCCATTGA
1 AGCATTGACTCAT-CATTGA
7973751 TTGGTCAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (21 bp):
AGCATTGACTCATCATTGACT
Found at i:7973855 original size:30 final size:29
Alignment explanation
Indices: 7973819--7973888 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 29
7973809 TTTTAATATT
*
7973819 ATATATATCATACTGAT-TAAAAATGT-AAAA
1 ATATATATAATA-T-ATATAAAAA-GTAAAAA
7973849 ATATATATAATATATATAAAAAGTAAAAA
1 ATATATATAATATATATAAAAAGTAAAAA
7973878 ATAGTATATAA
1 ATA-TATATAA
7973889 AAATTGAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
28 4 0.11
29 14 0.39
30 18 0.50
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.33
Consensus pattern (29 bp):
ATATATATAATATATATAAAAAGTAAAAA
Found at i:7973870 original size:21 final size:20
Alignment explanation
Indices: 7973844--7973912 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 20
7973834 ATTAAAAATG
*
7973844 TAAAAATATATATAATATATA
1 TAAAAATATA-AAAATATATA
7973865 TAAAAAGTA-AAAAATAGTATA
1 TAAAAA-TATAAAAATA-TATA
7973886 TAAAAAT-TGAAAAATAT-TA
1 TAAAAATAT-AAAAATATATA
7973905 TAAAAATA
1 TAAAAATA
7973913 ATATATTTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
19 9 0.21
20 7 0.17
21 24 0.57
22 2 0.05
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.30
Consensus pattern (20 bp):
TAAAAATATAAAAATATATA
Found at i:7973908 original size:19 final size:20
Alignment explanation
Indices: 7973857--7973911 Score: 76
Period size: 21 Copynumber: 2.8 Consensus size: 20
7973847 AAATATATAT
*
7973857 AATATATATAAAAAGTAAAA
1 AATATATATAAAAATTAAAA
*
7973877 AATAGTATATAAAAATTGAAA
1 AATA-TATATAAAAATTAAAA
7973898 AATAT-TATAAAAAT
1 AATATATATAAAAAT
7973912 AATATATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
19 9 0.28
20 5 0.16
21 18 0.56
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.29
Consensus pattern (20 bp):
AATATATATAAAAATTAAAA
Found at i:7974019 original size:23 final size:23
Alignment explanation
Indices: 7973970--7974041 Score: 92
Period size: 23 Copynumber: 3.1 Consensus size: 23
7973960 TTATTTTGAC
** *
7973970 TTTTTAAAATTTA-AAATTATAA
1 TTTTTAAAATTTATAAAAAATTA
*
7973992 GTTTTAGAAATTTATAAAAAATTA
1 TTTTTA-AAATTTATAAAAAATTA
7974016 TTTTTAAAATTTATAAAAAATTA
1 TTTTTAAAATTTATAAAAAATTA
7974039 TTT
1 TTT
7974042 ATTATATACA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
22 5 0.12
23 27 0.63
24 11 0.26
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (23 bp):
TTTTTAAAATTTATAAAAAATTA
Found at i:7974683 original size:18 final size:17
Alignment explanation
Indices: 7974642--7974683 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
7974632 ATTTTACACA
7974642 TTTTGTAATTTGATTCT
1 TTTTGTAATTTGATTCT
* *
7974659 TTTTGTAATTTTATTTT
1 TTTTGTAATTTGATTCT
7974676 TCTTTGTA
1 T-TTTGTA
7974684 TCCCTTTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 16 0.73
18 6 0.27
ACGTcount: A:0.17, C:0.05, G:0.10, T:0.69
Consensus pattern (17 bp):
TTTTGTAATTTGATTCT
Found at i:7975251 original size:15 final size:15
Alignment explanation
Indices: 7975231--7975286 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
7975221 ATTCAATATT
7975231 AATATTTTAATAATA
1 AATATTTTAATAATA
*
7975246 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
7975265 AATATATTAATAATA
1 AATATTTTAATAATA
7975280 AAT-TTTT
1 AATATTTT
7975287 TGTAGTATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 9
0.72 0.09 0.20
Matches are distributed among these distances:
14 3 0.09
15 13 0.39
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:7978599 original size:5 final size:5
Alignment explanation
Indices: 7978589--7978613 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
7978579 TATTGGGGTT
7978589 GACAG GACAG GACAG GACAG GACAG
1 GACAG GACAG GACAG GACAG GACAG
7978614 AAATGAGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.40, T:0.00
Consensus pattern (5 bp):
GACAG
Found at i:7978681 original size:46 final size:46
Alignment explanation
Indices: 7978609--7978708 Score: 139
Period size: 46 Copynumber: 2.2 Consensus size: 46
7978599 GACAGGACAG
* * * *
7978609 GACAGAAATGAGCCATGTAAGTCCATATCAGT-TATATGGCTTTGGA
1 GACAGGAACGAGCCATGTAAGCCCATATCA-TATATATGGCATTGGA
*
7978655 GACAGGAACGAGCCATGTAAGCCCATATTATATATATGGCATTGGA
1 GACAGGAACGAGCCATGTAAGCCCATATCATATATATGGCATTGGA
7978701 GACAGGAA
1 GACAGGAA
7978709 TAATTCATGT
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
45 1 0.02
46 47 0.98
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (46 bp):
GACAGGAACGAGCCATGTAAGCCCATATCATATATATGGCATTGGA
Found at i:7978718 original size:46 final size:46
Alignment explanation
Indices: 7978619--7978726 Score: 137
Period size: 46 Copynumber: 2.3 Consensus size: 46
7978609 GACAGAAATG
* *
7978619 AGCCATGTAAGTCCATATCAGTTATATGGCTTTGGAGACAGGAACG
1 AGCCATGTAAGTCCATATCAGTTATATGGCATTGGAGACAGGAACA
* * *
7978665 AGCCATGTAAGCCCATATTA-TATATATGGCATTGGAGACAGGAATA
1 AGCCATGTAAGTCCATATCAGT-TATATGGCATTGGAGACAGGAACA
**
7978711 ATTCATGTAAGTCCAT
1 AGCCATGTAAGTCCAT
7978727 GTCGAAGACA
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
45 1 0.02
46 52 0.98
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (46 bp):
AGCCATGTAAGTCCATATCAGTTATATGGCATTGGAGACAGGAACA
Found at i:8007428 original size:23 final size:23
Alignment explanation
Indices: 8007402--8007454 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
8007392 AATTTTAAAA
*
8007402 TATTAAAATATAATTTTATCATT
1 TATTAAAATATAATTTCATCATT
** *
8007425 TATTAATTTATAATTTCATTATT
1 TATTAAAATATAATTTCATCATT
8007448 T-TTAAAA
1 TATTAAAA
8007455 CAACTAAAAT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
22 4 0.17
23 20 0.83
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.55
Consensus pattern (23 bp):
TATTAAAATATAATTTCATCATT
Found at i:8011216 original size:25 final size:25
Alignment explanation
Indices: 8011186--8011237 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
8011176 TACAATTGTC
8011186 TATATATTTATTAAATTTATAAACA
1 TATATATTTATTAAATTTATAAACA
8011211 TATATATTTATTAAATTTATAAACA
1 TATATATTTATTAAATTTATAAACA
8011236 TA
1 TA
8011238 GACAAACTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (25 bp):
TATATATTTATTAAATTTATAAACA
Found at i:8011834 original size:29 final size:29
Alignment explanation
Indices: 8011802--8011873 Score: 92
Period size: 28 Copynumber: 2.5 Consensus size: 29
8011792 AGGGGTTATA
*
8011802 AAAAAATAATTTTGACAAGATGGGTTCTG
1 AAAAAATAATTTTGACAAGATGAGTTCTG
* * *
8011831 AAAAAATAA-TTTGACGAGTTGAGTTTTG
1 AAAAAATAATTTTGACAAGATGAGTTCTG
*
8011859 AAGAAATAATTTTGA
1 AAAAAATAATTTTGA
8011874 AGAAAAAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 23 0.62
29 14 0.38
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.33
Consensus pattern (29 bp):
AAAAAATAATTTTGACAAGATGAGTTCTG
Found at i:8014471 original size:65 final size:65
Alignment explanation
Indices: 8014389--8014600 Score: 185
Period size: 65 Copynumber: 3.2 Consensus size: 65
8014379 GGTCACAATC
* * * * *
8014389 CCTTTTCAAGTACTACACACGAAGTGTACATACCCTTTTCAATTTGTACACACAAAGTGCACATA
1 CCTTTTCAAGTAGTACACACAAAGTGTACCTAACCTTTTCAA-TTGTACACACAAAGTGTACATA
8014454 A
65 A
* * ** * * * * *
8014455 CCTTTTCAAGT-GTACACATATAGTGTACCTTTCCTTTTCAAGTGGTATACACAAAGTATACCTT
1 CCTTTTCAAGTAGTACACACAAAGTGTACCTAACCTTTTCAA-TTGTACACACAAAGTGTACATA
*
8014519 T
65 A
* * * * *
8014520 CCTTTTCATA-TGGTATACACAAAGTATACCTAACCTTTTCGATTGTACACATAAAGTGTACATA
1 CCTTTTCA-AGTAGTACACACAAAGTGTACCTAACCTTTTCAATTGTACACACAAAGTGTACATA
*
8014584 G
65 A
*
8014585 CCTTTTCAAGTTGTAC
1 CCTTTTCAAGTAGTAC
8014601 CCTTTCGGGA
Statistics
Matches: 112, Mismatches: 31, Indels: 7
0.75 0.21 0.05
Matches are distributed among these distances:
64 1 0.01
65 76 0.68
66 35 0.31
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.34
Consensus pattern (65 bp):
CCTTTTCAAGTAGTACACACAAAGTGTACCTAACCTTTTCAATTGTACACACAAAGTGTACATAA
Found at i:8014491 original size:32 final size:32
Alignment explanation
Indices: 8014389--8014600 Score: 129
Period size: 33 Copynumber: 6.5 Consensus size: 32
8014379 GGTCACAATC
* ** * * *
8014389 CCTTTTCAAGTACTACACACGAAGTGTACATAC
1 CCTTTTCAAGT-GTACACATAAAGTATACCTAT
* * ** * *
8014422 CCTTTTCAATTTGTACACACAAAGTGCACATAA
1 CCTTTTCAA-GTGTACACATAAAGTATACCTAT
* * *
8014455 CCTTTTCAAGTGTACACATATAGTGTACCTTT
1 CCTTTTCAAGTGTACACATAAAGTATACCTAT
* * *
8014487 CCTTTTCAAGTGGTATACACAAAGTATACCTTT
1 CCTTTTCAAGT-GTACACATAAAGTATACCTAT
* * *
8014520 CCTTTTCATA-TGGTATACACAAAGTATACCTAA
1 CCTTTTCA-AGT-GTACACATAAAGTATACCTAT
* * * * *
8014553 CCTTTTCGATTGTACACATAAAGTGTACATAG
1 CCTTTTCAAGTGTACACATAAAGTATACCTAT
8014585 CCTTTTCAAGTTGTAC
1 CCTTTTCAAG-TGTAC
8014601 CCTTTCGGGA
Statistics
Matches: 148, Mismatches: 26, Indels: 10
0.80 0.14 0.05
Matches are distributed among these distances:
32 52 0.35
33 94 0.64
34 2 0.01
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.34
Consensus pattern (32 bp):
CCTTTTCAAGTGTACACATAAAGTATACCTAT
Found at i:8014491 original size:98 final size:98
Alignment explanation
Indices: 8014389--8014595 Score: 227
Period size: 98 Copynumber: 2.1 Consensus size: 98
8014379 GGTCACAATC
* * * *
8014389 CCTTTTCAAGTACTACACACGAAGTGTACATACCCTTTTCA-ATTTGTACACACAAAGTGCACAT
1 CCTTTTCAAGTACTACACACAAAGTATACATACCCTTTTCATA-TGGTACACACAAAGTACACAT
* * **
8014453 AACCTTTTCAAGTGTACACATATAGTGTACCTTT
65 AACCTTTTCAAGTGTACACATAAAGTGTACATAG
** * * ** * * *
8014487 CCTTTTCAAGTGGTATACACAAAGTATACCTTTCCTTTTCATATGGTATACACAAAGTATACCTA
1 CCTTTTCAAGTACTACACACAAAGTATACATACCCTTTTCATATGGTACACACAAAGTACACATA
* *
8014552 ACCTTTTCGATTGTACACATAAAGTGTACATAG
66 ACCTTTTCAAGTGTACACATAAAGTGTACATAG
8014585 CCTTTTCAAGT
1 CCTTTTCAAGT
8014596 TGTACCCTTT
Statistics
Matches: 89, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
98 88 0.99
99 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.34
Consensus pattern (98 bp):
CCTTTTCAAGTACTACACACAAAGTATACATACCCTTTTCATATGGTACACACAAAGTACACATA
ACCTTTTCAAGTGTACACATAAAGTGTACATAG
Found at i:8014522 original size:33 final size:33
Alignment explanation
Indices: 8014455--8014559 Score: 133
Period size: 33 Copynumber: 3.2 Consensus size: 33
8014445 GTGCACATAA
* * * *
8014455 CCTTTTCAAGT-GTACACATATAGTGTACCTTT
1 CCTTTTCAAGTGGTATACACAAAGTATACCTTT
8014487 CCTTTTCAAGTGGTATACACAAAGTATACCTTT
1 CCTTTTCAAGTGGTATACACAAAGTATACCTTT
**
8014520 CCTTTTCATA-TGGTATACACAAAGTATACCTAA
1 CCTTTTCA-AGTGGTATACACAAAGTATACCTTT
8014553 CCTTTTC
1 CCTTTTC
8014560 GATTGTACAC
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
32 11 0.17
33 53 0.82
34 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.10, T:0.38
Consensus pattern (33 bp):
CCTTTTCAAGTGGTATACACAAAGTATACCTTT
Found at i:8015761 original size:13 final size:13
Alignment explanation
Indices: 8015743--8015768 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8015733 ACACATAATT
8015743 GATAAAAATTTTC
1 GATAAAAATTTTC
8015756 GATAAAAATTTTC
1 GATAAAAATTTTC
8015769 ATGCAACATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (13 bp):
GATAAAAATTTTC
Found at i:8019289 original size:20 final size:20
Alignment explanation
Indices: 8019264--8019311 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
8019254 CAGTTCACAC
*
8019264 GCCCGTGTGGATCTTGTCCA
1 GCCCGTGTGGATCGTGTCCA
*
8019284 GCCCGTGTGGATCGTGTCTA
1 GCCCGTGTGGATCGTGTCCA
8019304 GCCCGTGT
1 GCCCGTGT
8019312 TTGTTGCGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.08, C:0.29, G:0.33, T:0.29
Consensus pattern (20 bp):
GCCCGTGTGGATCGTGTCCA
Found at i:8033802 original size:33 final size:32
Alignment explanation
Indices: 8033751--8033846 Score: 115
Period size: 33 Copynumber: 3.0 Consensus size: 32
8033741 TAACCTTTTC
* *
8033751 AAGTGTACATTTCCTTTTCAAGTGGTATACACA
1 AAGTATACCTTTCCTTTTCAA-TGGTATACACA
*
8033784 AAGTATATCTTTCCTTTTCATATGGTATACACA
1 AAGTATACCTTTCCTTTTCA-ATGGTATACACA
**
8033817 AAGTATACCTAACCTTTTCAAT--TATACACA
1 AAGTATACCTTTCCTTTTCAATGGTATACACA
8033847 TAAAGTGTAC
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
30 8 0.14
32 2 0.04
33 45 0.80
34 1 0.02
ACGTcount: A:0.33, C:0.20, G:0.09, T:0.38
Consensus pattern (32 bp):
AAGTATACCTTTCCTTTTCAATGGTATACACA
Found at i:8034225 original size:18 final size:18
Alignment explanation
Indices: 8034185--8034226 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
8034175 CTAGTCCGAG
8034185 ACTTTTTCTTTCCTTCGA
1 ACTTTTTCTTTCCTTCGA
* *
8034203 TCTTTTTCTTT-GTTCGA
1 ACTTTTTCTTTCCTTCGA
8034220 CACTTTT
1 -ACTTTT
8034227 GGATCTATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.10, C:0.24, G:0.07, T:0.60
Consensus pattern (18 bp):
ACTTTTTCTTTCCTTCGA
Found at i:8034424 original size:25 final size:25
Alignment explanation
Indices: 8034385--8034433 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
8034375 AATTTACTCC
*
8034385 TTATTCCAATCTTATTCAAAATTCG
1 TTATTCCAAGCTTATTCAAAATTCG
*
8034410 TTATTCCAAGGTTATTCAAAATTC
1 TTATTCCAAGCTTATTCAAAATTC
8034434 CAATATAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.33, C:0.18, G:0.06, T:0.43
Consensus pattern (25 bp):
TTATTCCAAGCTTATTCAAAATTCG
Found at i:8037428 original size:2 final size:2
Alignment explanation
Indices: 8037421--8037454 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
8037411 AGTCTTAGGC
8037421 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
8037455 TATAAGTCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:8042942 original size:15 final size:15
Alignment explanation
Indices: 8042924--8042959 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
8042914 ATTATAACAA
8042924 AGCTTATTACATACG
1 AGCTTATTACATACG
8042939 AGCTTATTACATACG
1 AGCTTATTACATACG
*
8042954 AACTTA
1 AGCTTA
8042960 CCTCGAATGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.33
Consensus pattern (15 bp):
AGCTTATTACATACG
Found at i:8044893 original size:23 final size:22
Alignment explanation
Indices: 8044854--8044941 Score: 95
Period size: 23 Copynumber: 3.8 Consensus size: 22
8044844 GCTGATGGAT
*
8044854 AGTAAGCTCTATTGAGCTAAAAC
1 AGTAAGCTCTA-CGAGCTAAAAC
* **
8044877 GGTAAGCTCTGACGAGCTAAATT
1 AGTAAGCTCT-ACGAGCTAAAAC
8044900 AGTAAGCTCATACGAGCTAAGAAC
1 AGTAAGCTC-TACGAGCTAA-AAC
8044924 AGTAAGCTCTTACGAGCT
1 AGTAAGCTC-TACGAGCT
8044942 GATATATTAG
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
23 34 0.63
24 20 0.37
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (22 bp):
AGTAAGCTCTACGAGCTAAAAC
Found at i:8044968 original size:50 final size:49
Alignment explanation
Indices: 8044817--8044968 Score: 152
Period size: 50 Copynumber: 3.1 Consensus size: 49
8044807 CTGCTCTTTC
* * * * *
8044817 GAGCTATGAACAGTAAACTCCTCCTGAGCTGATGGA-TAGTAAGCTC-TATT
1 GAGCTAAGAACAGTAAGCTCTTAC-GAGCTGAT-AATTAGTAAGCTCATA-T
* * *
8044867 GAGCTAA-AACGGTAAGCTCTGACGAGCT-A-AATTAGTAAGCTCATAC
1 GAGCTAAGAACAGTAAGCTCTTACGAGCTGATAATTAGTAAGCTCATAT
8044913 GAGCTAAGAACAGTAAGCTCTTACGAGCTGATATATTAGTAAGCTCATAT
1 GAGCTAAGAACAGTAAGCTCTTACGAGCTGATA-ATTAGTAAGCTCATAT
*
8044963 AAGCTA
1 GAGCTA
8044969 TGGTGAGTCT
Statistics
Matches: 84, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
45 1 0.01
46 17 0.20
47 22 0.26
48 6 0.07
49 12 0.14
50 26 0.31
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (49 bp):
GAGCTAAGAACAGTAAGCTCTTACGAGCTGATAATTAGTAAGCTCATAT
Found at i:8058620 original size:22 final size:22
Alignment explanation
Indices: 8058592--8058638 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
8058582 AAAGGTTATC
8058592 ATAGTTTAGGAGTATAAATAAG
1 ATAGTTTAGGAGTATAAATAAG
8058614 ATAGTTTAGGAGTATAAATAAG
1 ATAGTTTAGGAGTATAAATAAG
8058636 ATA
1 ATA
8058639 CTGGTGCTCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.47, C:0.00, G:0.21, T:0.32
Consensus pattern (22 bp):
ATAGTTTAGGAGTATAAATAAG
Found at i:8061450 original size:26 final size:26
Alignment explanation
Indices: 8061421--8061482 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
8061411 TATGTTATAA
*
8061421 AAATAATTATATT-ATTTATTTATATT
1 AAATAATTA-ATTAATATATTTATATT
8061447 AAATAA-TAATTAGATATATTTATATT
1 AAATAATTAATTA-ATATATTTATATT
*
8061473 AAATTATTAA
1 AAATAATTAA
8061483 CTCAATAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 3 0.10
25 2 0.06
26 23 0.74
27 3 0.10
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (26 bp):
AAATAATTAATTAATATATTTATATT
Found at i:8063213 original size:112 final size:112
Alignment explanation
Indices: 8063016--8063237 Score: 390
Period size: 112 Copynumber: 2.0 Consensus size: 112
8063006 AGTCTATAAT
* *
8063016 CAAACTAACTTCAAAATTGCATCTTGAATTTTGGAGGTTGTGATGACTAAACGAGTGTTTTGATG
1 CAAACTAACTTCAAAATTGCAACTTGAATTTTGGAGGTTGTGACGACTAAACGAGTGTTTTGATG
8063081 GTTGGAAGAGAAAGTTGTGGCAGCAGGCCACAATGAGTGAAGGTAAC
66 GTTGGAAGAGAAAGTTGTGGCAGCAGGCCACAATGAGTGAAGGTAAC
* * *
8063128 CAAACTTACTTCAAAGTTGCAACTTGAATTTTGGAGGTTGTGACGACTAGACGAGTGTTTTGATG
1 CAAACTAACTTCAAAATTGCAACTTGAATTTTGGAGGTTGTGACGACTAAACGAGTGTTTTGATG
*
8063193 GTTGGAAGAGAAAGTTGTGGCAGCAGGCCACAGTGAGTGAAGGTA
66 GTTGGAAGAGAAAGTTGTGGCAGCAGGCCACAATGAGTGAAGGTA
8063238 GTAAGCTGCC
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
112 104 1.00
ACGTcount: A:0.31, C:0.13, G:0.29, T:0.27
Consensus pattern (112 bp):
CAAACTAACTTCAAAATTGCAACTTGAATTTTGGAGGTTGTGACGACTAAACGAGTGTTTTGATG
GTTGGAAGAGAAAGTTGTGGCAGCAGGCCACAATGAGTGAAGGTAAC
Found at i:8087193 original size:28 final size:28
Alignment explanation
Indices: 8087161--8087244 Score: 78
Period size: 33 Copynumber: 2.8 Consensus size: 28
8087151 ACAATGCATG
* *
8087161 CAGTAACAGTCTGGGCCTGGGCCCTATT
1 CAGTAACAGTCTGGGCCTGAGCCCTATA
*
8087189 CAGTATCAGTACAGTCTGGGCCTTAGCCCTATA
1 CAG--T-A--ACAGTCTGGGCCTGAGCCCTATA
* *
8087222 CAGTAACAGTGTGGGCCTAAGCC
1 CAGTAACAGTCTGGGCCTGAGCC
8087245 TAATTCAGTA
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
28 19 0.41
30 2 0.04
31 2 0.04
33 23 0.50
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (28 bp):
CAGTAACAGTCTGGGCCTGAGCCCTATA
Found at i:8087204 original size:33 final size:34
Alignment explanation
Indices: 8087161--8087231 Score: 99
Period size: 33 Copynumber: 2.1 Consensus size: 34
8087151 ACAATGCATG
* * *
8087161 CAGTAACAGTCTGGGCCTGGGCCCTATTCAGTAT
1 CAGTAACAGTCTGGGCCTGAGCCCTATACAGTAA
*
8087195 CAGT-ACAGTCTGGGCCTTAGCCCTATACAGTAA
1 CAGTAACAGTCTGGGCCTGAGCCCTATACAGTAA
8087228 CAGT
1 CAGT
8087232 GTGGGCCTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
33 29 0.88
34 4 0.12
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (34 bp):
CAGTAACAGTCTGGGCCTGAGCCCTATACAGTAA
Found at i:8087253 original size:28 final size:28
Alignment explanation
Indices: 8087161--8087259 Score: 83
Period size: 28 Copynumber: 3.4 Consensus size: 28
8087151 ACAATGCATG
**
8087161 CAGTAACAGTCTGGGCCTGGGCCCTATT
1 CAGTAACAGTCTGGGCCTAAGCCCTATT
* *
8087189 CAGTATCAGTACAGTCTGGGCCTTAGCCCTATA
1 CAG--T-A--ACAGTCTGGGCCTAAGCCCTATT
*
8087222 CAGTAACAGTGTGGGCCTAAG-CCTAATT
1 CAGTAACAGTCTGGGCCTAAGCCCT-ATT
*
8087250 CAGTATCAGT
1 CAGTAACAGT
8087260 ATAGTACAGT
Statistics
Matches: 58, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
27 3 0.05
28 28 0.48
30 2 0.03
31 2 0.03
33 23 0.40
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.26
Consensus pattern (28 bp):
CAGTAACAGTCTGGGCCTAAGCCCTATT
Found at i:8087899 original size:20 final size:19
Alignment explanation
Indices: 8087853--8087910 Score: 57
Period size: 20 Copynumber: 3.1 Consensus size: 19
8087843 TGTGGTGTCC
*
8087853 ACGA-GCCCATTGGGCCCA
1 ACGAGGCCCATTCGGCCCA
*
8087871 TCG-GGCCCATCTCGGCCCA
1 ACGAGGCCCAT-TCGGCCCA
*
8087890 ACGAGGCCCATAACGGCCCA
1 ACGAGGCCCAT-TCGGCCCA
8087910 A
1 A
8087911 GCCCACGAGA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
18 8 0.25
19 9 0.28
20 15 0.47
ACGTcount: A:0.22, C:0.41, G:0.26, T:0.10
Consensus pattern (19 bp):
ACGAGGCCCATTCGGCCCA
Found at i:8092612 original size:23 final size:24
Alignment explanation
Indices: 8092586--8092681 Score: 80
Period size: 23 Copynumber: 4.3 Consensus size: 24
8092576 CCTGATCAGA
8092586 ATACGACGACACAT-AAGTGCCTG
1 ATACGACGACACATAAAGTGCCTG
* *
8092609 ATACGAC-ACAC--GAGGTGCCT-
1 ATACGACGACACATAAAGTGCCTG
* **
8092629 AAAATACGACACATAAAGTGCCTG
1 ATACGACGACACATAAAGTGCCTG
* *
8092653 ATA-TACGACACATAAAGTGCTTG
1 ATACGACGACACATAAAGTGCCTG
8092676 AT-CGAC
1 ATACGAC
8092682 AAAGCCGATA
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
20 4 0.07
21 11 0.19
22 4 0.07
23 37 0.64
24 2 0.03
ACGTcount: A:0.38, C:0.24, G:0.20, T:0.19
Consensus pattern (24 bp):
ATACGACGACACATAAAGTGCCTG
Found at i:8093560 original size:17 final size:18
Alignment explanation
Indices: 8093530--8093563 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
8093520 AATTTCTATT
8093530 CAATTTATACCCTAATTC
1 CAATTTATACCCTAATTC
*
8093548 CAATTTA-ATCCTAATT
1 CAATTTATACCCTAATT
8093564 AACTCATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.35, C:0.24, G:0.00, T:0.41
Consensus pattern (18 bp):
CAATTTATACCCTAATTC
Found at i:8094082 original size:12 final size:12
Alignment explanation
Indices: 8094067--8094094 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
8094057 GTTAATAATG
8094067 ATAATAATTATA
1 ATAATAATTATA
8094079 ATAATAATTATA
1 ATAATAATTATA
8094091 ATAA
1 ATAA
8094095 ATATCTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
ATAATAATTATA
Found at i:8094401 original size:21 final size:20
Alignment explanation
Indices: 8094348--8094401 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 20
8094338 TAATAAATAA
*
8094348 TAAATATATAT-TTACTAAT
1 TAAATATATATATTACAAAT
8094367 TAAATATA-AGTATTACAAAT
1 TAAATATATA-TATTACAAAT
*
8094387 GTACATATATATATT
1 -TAAATATATATATT
8094402 TTTACAATTG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
18 1 0.03
19 9 0.31
20 7 0.24
21 11 0.38
22 1 0.03
ACGTcount: A:0.48, C:0.06, G:0.04, T:0.43
Consensus pattern (20 bp):
TAAATATATATATTACAAAT
Found at i:8098482 original size:43 final size:43
Alignment explanation
Indices: 8098333--8098560 Score: 221
Period size: 42 Copynumber: 5.4 Consensus size: 43
8098323 TTTATTTAAA
* *
8098333 AAAAACGCTGCTAAAGACCATGACCTTTAGCGGCGCTTTTCC-
1 AAAAACGCCGCTAAAGACCATGACTTTTAGCGGCGCTTTTCCT
** * * * *
8098375 CGAAACACCGCTAAAGACCATGACTTTTAGCCGCTCTTTT-TT
1 AAAAACGCCGCTAAAGACCATGACTTTTAGCGGCGCTTTTCCT
* ** * *
8098417 TAAAACGCCGCTAAAGGTCATGACTTTTAGCGACGCTTCTCCT
1 AAAAACGCCGCTAAAGACCATGACTTTTAGCGGCGCTTTTCCT
* * *
8098460 AAAAACACCGCTAAAGACCATGACATTTAGCGGCACTTTT-CT
1 AAAAACGCCGCTAAAGACCATGACTTTTAGCGGCGCTTTTCCT
* * * * *
8098502 CAAAAACGTCACTAAAGACCATGACTTTTAACGGCGTTTTTTCT
1 -AAAAACGCCGCTAAAGACCATGACTTTTAGCGGCGCTTTTCCT
*
8098546 -CAAACGCCGCTAAAG
1 AAAAACGCCGCTAAAG
8098561 GTCACTACAT
Statistics
Matches: 146, Mismatches: 36, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
42 78 0.53
43 66 0.45
44 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.26
Consensus pattern (43 bp):
AAAAACGCCGCTAAAGACCATGACTTTTAGCGGCGCTTTTCCT
Found at i:8098499 original size:85 final size:85
Alignment explanation
Indices: 8098333--8098531 Score: 247
Period size: 84 Copynumber: 2.3 Consensus size: 85
8098323 TTTATTTAAA
* * * * **
8098333 AAAAACGCTGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCGAAACACCGCTAAAGACCATGA
1 AAAAACGCCGCTAAAGACCATGACTTTTAGCGACGCTTCTCCAAAAACACCGCTAAAGACCATGA
* * *
8098398 CTTTTAGCCGCTCTTTT-TT
66 CATTTAGCCGCACTTTTCTC
* **
8098417 TAAAACGCCGCTAAAGGTCATGACTTTTAGCGACGCTTCTCCTAAAAACACCGCTAAAGACCATG
1 AAAAACGCCGCTAAAGACCATGACTTTTAGCGACGCTTCTCC-AAAAACACCGCTAAAGACCATG
*
8098482 ACATTTAGCGGCACTTTTCTC
65 ACATTTAGCCGCACTTTTCTC
* *
8098503 AAAAACGTCACTAAAGACCATGACTTTTA
1 AAAAACGCCGCTAAAGACCATGACTTTTA
8098532 ACGGCGTTTT
Statistics
Matches: 95, Mismatches: 18, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
84 35 0.37
85 35 0.37
86 25 0.26
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (85 bp):
AAAAACGCCGCTAAAGACCATGACTTTTAGCGACGCTTCTCCAAAAACACCGCTAAAGACCATGA
CATTTAGCCGCACTTTTCTC
Found at i:8098556 original size:85 final size:83
Alignment explanation
Indices: 8098333--8098560 Score: 231
Period size: 85 Copynumber: 2.7 Consensus size: 83
8098323 TTTATTTAAA
** * * *
8098333 AAAAACGCTGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCGAAACACCGCTAAAGACCATGA
1 AAAAACGCCACTAAAGACCATGACTTTTAGCGGCGTTTTTCTC-AAACACCGCTAAAGACCATGA
* * *
8098398 CTTTTAGCCGCTCTTTTTT
65 CATTTAGCCGCACTTTTTC
* * ** * * * *
8098417 TAAAACGCCGCTAAAGGTCATGACTTTTAGCGACGCTTCTCCTAAAAACACCGCTAAAGACCATG
1 AAAAACGCCACTAAAGACCATGACTTTTAGCGGCG-TTTTTCT-CAAACACCGCTAAAGACCATG
*
8098482 ACATTTAGCGGCACTTTTCTC
64 ACATTTAGCCGCACTTTT-TC
* * *
8098503 AAAAACGTCACTAAAGACCATGACTTTTAACGGCGTTTTTTCTCAAACGCCGCTAAAG
1 AAAAACGCCACTAAAGACCATGACTTTTAGCGGCG-TTTTTCTCAAACACCGCTAAAG
8098561 GTCACTACAT
Statistics
Matches: 114, Mismatches: 27, Indels: 5
0.78 0.18 0.03
Matches are distributed among these distances:
84 29 0.25
85 51 0.45
86 34 0.30
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.26
Consensus pattern (83 bp):
AAAAACGCCACTAAAGACCATGACTTTTAGCGGCGTTTTTCTCAAACACCGCTAAAGACCATGAC
ATTTAGCCGCACTTTTTC
Found at i:8103869 original size:9 final size:9
Alignment explanation
Indices: 8103857--8103913 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
8103847 TTTGATAAAC
8103857 ATGATATGT
1 ATGATATGT
*
8103866 ATGATATGCGC
1 ATGATAT--GT
*
8103877 ATGACATGT
1 ATGATATGT
*
8103886 ATGATATGCAC
1 ATGATATG--T
8103897 ATGATATGT
1 ATGATATGT
8103906 ATGATATG
1 ATGATATG
8103914 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.33, C:0.09, G:0.23, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:8103885 original size:20 final size:20
Alignment explanation
Indices: 8103855--8103917 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
8103845 ATTTTGATAA
8103855 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
8103875 GCATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
8103895 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
8103915 ACA
1 ACA
8103918 CGAGATGTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:8104051 original size:23 final size:24
Alignment explanation
Indices: 8103971--8104116 Score: 190
Period size: 24 Copynumber: 6.0 Consensus size: 24
8103961 GAGGAAGTGC
8103971 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
8103995 AAAAGGGTTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
8104019 AAAAGTGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
8104043 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
8104066 AAAAAAAAGGGCTT-TGCCCCAGTTATT
1 ----AAAAGGGCTTATGCCCCAGTTATT
*
8104093 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
8104117 ATGATAAAGT
Statistics
Matches: 109, Mismatches: 5, Indels: 15
0.84 0.04 0.12
Matches are distributed among these distances:
23 28 0.26
24 51 0.47
25 8 0.07
27 13 0.12
28 9 0.08
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:8104344 original size:31 final size:31
Alignment explanation
Indices: 8104309--8104372 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
8104299 CGGTTACAGT
*
8104309 AAAGGCTCCGGCCCAGTAATATGAAATATGA
1 AAAGGCTCCGACCCAGTAATATGAAATATGA
* ** *
8104340 AAAGGCTTCGACCCAGTGTTATGAATTATGA
1 AAAGGCTCCGACCCAGTAATATGAAATATGA
8104371 AA
1 AA
8104373 TATGAAAAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTCCGACCCAGTAATATGAAATATGA
Found at i:8106446 original size:15 final size:14
Alignment explanation
Indices: 8106424--8106474 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 14
8106414 ATATTAAATG
*
8106424 TTAATTTTTAATTT
1 TTAAATTTTAATTT
8106438 TTAAATTTTAATTT
1 TTAAATTTTAATTT
*
8106452 TT---TTATAATTT
1 TTAAATTTTAATTT
*
8106463 TTAAATTATAAT
1 TTAAATTTTAAT
8106475 GAAATCGATG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
11 10 0.31
14 22 0.69
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (14 bp):
TTAAATTTTAATTT
Found at i:8106463 original size:8 final size:7
Alignment explanation
Indices: 8106424--8106453 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
8106414 ATATTAAATG
8106424 TTAATTT
1 TTAATTT
8106431 TTAATTT
1 TTAATTT
*
8106438 TTAAATT
1 TTAATTT
8106445 TTAATTT
1 TTAATTT
8106452 TT
1 TT
8106454 TTATAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (7 bp):
TTAATTT
Found at i:8106464 original size:25 final size:24
Alignment explanation
Indices: 8106428--8106474 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
8106418 TAAATGTTAA
*
8106428 TTTTTAATTTTTAAATTTTAATTT
1 TTTTTAATTTTTAAATTATAATTT
8106452 TTTTATAATTTTTAAATTATAAT
1 TTTT-TAATTTTTAAATTATAAT
8106475 GAAATCGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (24 bp):
TTTTTAATTTTTAAATTATAATTT
Found at i:8107506 original size:21 final size:21
Alignment explanation
Indices: 8107469--8107526 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 21
8107459 CTTAACCCTT
* *
8107469 AACCCTTAAGCCT-TAAACCCC
1 AACCCTTAA-ACTATAAACCAC
*
8107490 AACCCTTAAACTATAAACCAT
1 AACCCTTAAACTATAAACCAC
* *
8107511 AACCCATAAACCATAA
1 AACCCTTAAACTATAA
8107527 TCCCTAAACC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 2 0.06
21 29 0.94
ACGTcount: A:0.45, C:0.34, G:0.02, T:0.19
Consensus pattern (21 bp):
AACCCTTAAACTATAAACCAC
Found at i:8107539 original size:22 final size:22
Alignment explanation
Indices: 8107511--8107556 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
8107501 TATAAACCAT
*
8107511 AACCCATAAACCATAATCCCTA
1 AACCCATAAACCATAAGCCCTA
*
8107533 AACCCATAATCCATAAGCCCTA
1 AACCCATAAACCATAAGCCCTA
8107555 AA
1 AA
8107557 TAGTAACTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.46, C:0.35, G:0.02, T:0.17
Consensus pattern (22 bp):
AACCCATAAACCATAAGCCCTA
Found at i:8107541 original size:15 final size:15
Alignment explanation
Indices: 8107502--8107548 Score: 64
Period size: 14 Copynumber: 3.3 Consensus size: 15
8107492 CCCTTAAACT
8107502 ATAAACCATAA-CCC
1 ATAAACCATAATCCC
8107516 ATAAACCATAATCCC
1 ATAAACCATAATCCC
8107531 -TAAACCCATAAT-CC
1 ATAAA-CCATAATCCC
8107545 ATAA
1 ATAA
8107549 GCCCTAAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
14 17 0.57
15 13 0.43
ACGTcount: A:0.49, C:0.32, G:0.00, T:0.19
Consensus pattern (15 bp):
ATAAACCATAATCCC
Found at i:8108152 original size:41 final size:41
Alignment explanation
Indices: 8108067--8108249 Score: 178
Period size: 41 Copynumber: 4.5 Consensus size: 41
8108057 TTTTTCGGCG
* * * * *
8108067 TTTTTTGAAAAGCGCCGCTAAATA-TCGAGCATTAGCGGCG-
1 TTTTTTAAAAAGCGCCGCT-AATACTCAATCTTTAGCAGCGT
8108107 TTTTTTAAAAAGCGCCGCTAATACTCAATCTTTAGCAGCGT
1 TTTTTTAAAAAGCGCCGCTAATACTCAATCTTTAGCAGCGT
* * * *
8108148 TTTTTTAAAAAGCGCCGCTAA-AGGTGAACCTATAGCAGCGT
1 TTTTTTAAAAAGCGCCGCTAATA-CTCAATCTTTAGCAGCGT
* ** *
8108189 TTTTTTAAAAAGCGCCGCTAATGCTCGTTCTTTAGCGGCGT
1 TTTTTTAAAAAGCGCCGCTAATACTCAATCTTTAGCAGCGT
*
8108230 TTTTATGAAAAA-CG-CGCTAA
1 TTTT-TTAAAAAGCGCCGCTAA
8108250 AAATGCCGCT
Statistics
Matches: 120, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 4 0.03
40 37 0.31
41 73 0.61
42 6 0.05
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (41 bp):
TTTTTTAAAAAGCGCCGCTAATACTCAATCTTTAGCAGCGT
Found at i:8108153 original size:82 final size:82
Alignment explanation
Indices: 8108067--8108250 Score: 230
Period size: 82 Copynumber: 2.3 Consensus size: 82
8108057 TTTTTCGGCG
* * *
8108067 TTTTTTGAAAAGCGCCGCTAAATATCGAGCAT-TAGCGGCG-TTTTTTAAAAAGCGCCGCTAATA
1 TTTTTTGAAAAGCGCCGCTAAAGAT-GAACATATAGCAGCGTTTTTTTAAAAAGCGCCGCTAATA
8108130 CTCAATCTTTAGCAGCGT
65 CTCAATCTTTAGCAGCGT
* * * *
8108148 TTTTTTAAAAAGCGCCGCTAAAGGTGAACCTATAGCAGCGTTTTTTTAAAAAGCGCCGCTAATGC
1 TTTTTTGAAAAGCGCCGCTAAAGATGAACATATAGCAGCGTTTTTTTAAAAAGCGCCGCTAATAC
** *
8108213 TCGTTCTTTAGCGGCGT
66 TCAATCTTTAGCAGCGT
* *
8108230 TTTTATGAAAAACG-CGCTAAA
1 TTTTTTGAAAAGCGCCGCTAAA
8108251 AATGCCGCTA
Statistics
Matches: 88, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
80 4 0.05
81 36 0.41
82 48 0.55
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (82 bp):
TTTTTTGAAAAGCGCCGCTAAAGATGAACATATAGCAGCGTTTTTTTAAAAAGCGCCGCTAATAC
TCAATCTTTAGCAGCGT
Found at i:8108459 original size:10 final size:10
Alignment explanation
Indices: 8108446--8108499 Score: 51
Period size: 10 Copynumber: 5.6 Consensus size: 10
8108436 AAAAAATATT
8108446 AAATATATAA
1 AAATATATAA
*
8108456 AAATATATAG
1 AAATATATAA
* *
8108466 AAATATTCTTA
1 AAATA-TATAA
8108477 AAA-ATA-AA
1 AAATATATAA
8108485 AAATAT-TAA
1 AAATATATAA
8108494 AAATAT
1 AAATAT
8108500 GATAGAAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
8 4 0.11
9 11 0.31
10 15 0.43
11 5 0.14
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (10 bp):
AAATATATAA
Found at i:8113469 original size:17 final size:19
Alignment explanation
Indices: 8113447--8113481 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8113437 GATATGATAC
8113447 TAAAAT-TAT-TAAAAAAT
1 TAAAATATATATAAAAAAT
8113464 TAAAATATATATAAAAAA
1 TAAAATATATATAAAAAA
8113482 ATCTGGGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 3 0.19
19 7 0.44
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
TAAAATATATATAAAAAAT
Found at i:8113771 original size:22 final size:21
Alignment explanation
Indices: 8113736--8113810 Score: 75
Period size: 22 Copynumber: 3.7 Consensus size: 21
8113726 AAAAGGTATC
* *
8113736 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
8113757 TACAAAATCATATCTCTAAGAT
1 TAC-AAATCATATCTCTAAGAT
* *
8113779 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
8113798 TGC-AATCATATCT
1 TACAAATCATATCT
8113811 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 10 0.22
22 18 0.39
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.35
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:8113795 original size:19 final size:19
Alignment explanation
Indices: 8113771--8113861 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
8113761 AAATCATATC
8113771 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
8113790 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
8113808 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
8113825 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
8113844 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
8113862 TGAATATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:8113827 original size:35 final size:36
Alignment explanation
Indices: 8113762--8113861 Score: 148
Period size: 35 Copynumber: 2.7 Consensus size: 36
8113752 AAGATTACAA
8113762 AATCATATCTCTAAGATTGCATATCATATCTAAGATTGC
1 AATCATA--TCTAAGATTG-ATATCATATCTAAGATTGC
8113801 AATCATATCTAAGATTG-TATCATATCTAAGATTGC
1 AATCATATCTAAGATTGATATCATATCTAAGATTGC
8113836 ATATCATATCTAAGATTGCATATCAT
1 A-ATCATATCTAAGATTG-ATATCAT
8113862 TGAATATTAT
Statistics
Matches: 58, Mismatches: 0, Indels: 7
0.89 0.00 0.11
Matches are distributed among these distances:
35 19 0.33
36 16 0.28
37 10 0.17
38 6 0.10
39 7 0.12
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (36 bp):
AATCATATCTAAGATTGATATCATATCTAAGATTGC
Found at i:8114017 original size:21 final size:20
Alignment explanation
Indices: 8113980--8114018 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
8113970 TTGGACTTCG
**
8113980 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGACTTATTAT
8114000 TTTTGTTTTTGGACTTATT
1 TTTT-TTTTTGGACTTATT
8114019 TCTGGGCCCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTGGACTTATTAT
Found at i:8114332 original size:44 final size:45
Alignment explanation
Indices: 8114211--8114392 Score: 240
Period size: 45 Copynumber: 4.1 Consensus size: 45
8114201 GGAAGGAGAT
* * * * *
8114211 ATCTGCTATCTTTGATCTACTCCCCGTATAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAA
* *
8114256 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAA
* * *
8114301 ATCTGCT-TCTTCAATCTGCTCCCCATTTAATACAGATATGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAA
* * *
8114345 ATCTGTTATCTCCGATTTGCTCCCCATCTAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAA
8114390 ATC
1 ATC
8114393 ATCTTGGATC
Statistics
Matches: 120, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
44 39 0.32
45 81 0.68
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (45 bp):
ATCTGCTATCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAA
Found at i:8114335 original size:89 final size:90
Alignment explanation
Indices: 8114211--8114392 Score: 267
Period size: 89 Copynumber: 2.0 Consensus size: 90
8114201 GGAAGGAGAT
** * *
8114211 ATCTGCTATCTTTGATCTACTCCCCGTATAATACAGAGACGCCAAATCTGTTATCTTCGATCTGC
1 ATCTGCTATCTTCAATCTACTCCCCATATAATACAGAGACGCCAAATCTGTTATCTCCGATCTGC
*
8114276 TCCCCGTCTAATACAGAGATGCCAA
66 TCCCCATCTAATACAGAGATGCCAA
* * * * *
8114301 ATCTGCT-TCTTCAATCTGCTCCCCATTTAATACAGATATGCCAAATCTGTTATCTCCGATTTGC
1 ATCTGCTATCTTCAATCTACTCCCCATATAATACAGAGACGCCAAATCTGTTATCTCCGATCTGC
8114365 TCCCCATCTAATACAGAGATGCCAA
66 TCCCCATCTAATACAGAGATGCCAA
8114390 ATC
1 ATC
8114393 ATCTTGGATC
Statistics
Matches: 82, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
89 75 0.91
90 7 0.09
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (90 bp):
ATCTGCTATCTTCAATCTACTCCCCATATAATACAGAGACGCCAAATCTGTTATCTCCGATCTGC
TCCCCATCTAATACAGAGATGCCAA
Done.