Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 244 of 290
Found at i:79266328 original size:17 final size:18
Alignment explanation
Indices: 79266308--79266341 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
79266298 AGGGTTAGGC
79266308 GTTT-TGGGTTTTTTAAG
1 GTTTATGGGTTTTTTAAG
*
79266325 GTTTATGGTTTTTTTAA
1 GTTTATGGGTTTTTTAA
79266342 AGTGTTCAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.15, C:0.00, G:0.24, T:0.62
Consensus pattern (18 bp):
GTTTATGGGTTTTTTAAG
Found at i:79273822 original size:68 final size:68
Alignment explanation
Indices: 79273713--79273843 Score: 253
Period size: 68 Copynumber: 1.9 Consensus size: 68
79273703 CTCTTGACTA
*
79273713 GAAATAGTCCATCGTGTTCCTTCGATACATAAATCATCCAATACCTAGGCAAAACCTTCAGTAGG
1 GAAATAGTCCATCGTGTTCCTTCGATACATAAATCATCCAATACATAGGCAAAACCTTCAGTAGG
79273778 GAT
66 GAT
79273781 GAAATAGTCCATCGTGTTCCTTCGATACATAAATCATCCAATACATAGGCAAAACCTTCAGTA
1 GAAATAGTCCATCGTGTTCCTTCGATACATAAATCATCCAATACATAGGCAAAACCTTCAGTA
79273844 TTGATACTGT
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
68 62 1.00
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.27
Consensus pattern (68 bp):
GAAATAGTCCATCGTGTTCCTTCGATACATAAATCATCCAATACATAGGCAAAACCTTCAGTAGG
GAT
Found at i:79281660 original size:24 final size:24
Alignment explanation
Indices: 79281613--79281660 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
79281603 GAGGTAACTA
79281613 AAGGTGCCTCCGGAGATGATACCG
1 AAGGTGCCTCCGGAGATGATACCG
79281637 AAGGTGCCTCCGGAGATGATACCG
1 AAGGTGCCTCCGGAGATGATACCG
79281661 GAGGGGTATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.33, T:0.17
Consensus pattern (24 bp):
AAGGTGCCTCCGGAGATGATACCG
Found at i:79281672 original size:24 final size:24
Alignment explanation
Indices: 79281621--79281672 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
79281611 TAAAGGTGCC
* *
79281621 TCCGGAGATGATACCGAAGGTGCC
1 TCCGGAGATGATACCGAAGGGGCA
* *
79281645 TCCGGAGATGATACCGGAGGGGTA
1 TCCGGAGATGATACCGAAGGGGCA
79281669 TCCG
1 TCCG
79281673 AAGGTGTATC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.23, C:0.23, G:0.37, T:0.17
Consensus pattern (24 bp):
TCCGGAGATGATACCGAAGGGGCA
Found at i:79282329 original size:21 final size:21
Alignment explanation
Indices: 79282305--79282347 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
79282295 GAGTTTCATG
79282305 ATAGAT-TATCAATGTTTT-TTA
1 ATAGATATA-CAA-GTTTTGTTA
79282326 ATAGATATACAAGTTTTGTTA
1 ATAGATATACAAGTTTTGTTA
79282347 A
1 A
79282348 GTGATTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 5 0.25
21 13 0.65
22 2 0.10
ACGTcount: A:0.37, C:0.05, G:0.12, T:0.47
Consensus pattern (21 bp):
ATAGATATACAAGTTTTGTTA
Found at i:79282937 original size:40 final size:40
Alignment explanation
Indices: 79282817--79282964 Score: 170
Period size: 40 Copynumber: 3.7 Consensus size: 40
79282807 TGATTACAAA
* * * * *
79282817 TCAGCTATTTGTGGCACTTAGTGTGTGATTCGACATAGCT
1 TCAGCTATATATGGCACTTAGTGTGCGATTTGAGATAGCT
* * * *
79282857 ACGGTTATATATGGCACTTAGTGTGTGATTTGAGATAGCT
1 TCAGCTATATATGGCACTTAGTGTGCGATTTGAGATAGCT
79282897 TCAGCTATATATGGCACTTAGTGTGCGATTTGAGATAGCT
1 TCAGCTATATATGGCACTTAGTGTGCGATTTGAGATAGCT
* * ** *
79282937 TCGGCTATGTACAGTACTTAGTGTGCGA
1 TCAGCTATATATGGCACTTAGTGTGCGA
79282965 GATATCGAGT
Statistics
Matches: 92, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 92 1.00
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.36
Consensus pattern (40 bp):
TCAGCTATATATGGCACTTAGTGTGCGATTTGAGATAGCT
Found at i:79286539 original size:23 final size:23
Alignment explanation
Indices: 79286499--79286548 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
79286489 CGATATAATT
* * * *
79286499 AAAATATATATTATTTTTAAATG
1 AAAATATAAATAAATTTTAAATA
*
79286522 AAAATATAAATAAATTTTGAATA
1 AAAATATAAATAAATTTTAAATA
79286545 AAAA
1 AAAA
79286549 GCCTGAGAGA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (23 bp):
AAAATATAAATAAATTTTAAATA
Found at i:79291744 original size:25 final size:24
Alignment explanation
Indices: 79291716--79291762 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
79291706 TTATAATATT
79291716 AATAATAACAAAATATAATAATACC
1 AATAATAACAAAATATAA-AATACC
*
79291741 AATAATAATAAAATATAAAATA
1 AATAATAACAAAATATAAAATA
79291763 AAATATTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (24 bp):
AATAATAACAAAATATAAAATACC
Found at i:79296080 original size:13 final size:13
Alignment explanation
Indices: 79296062--79296094 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
79296052 CATTTGCTTG
79296062 TCCTCAAGCAAAA
1 TCCTCAAGCAAAA
79296075 TCCTCAAGCAAAA
1 TCCTCAAGCAAAA
79296088 TCCTCAA
1 TCCTCAA
79296095 CTCATAATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.42, C:0.33, G:0.06, T:0.18
Consensus pattern (13 bp):
TCCTCAAGCAAAA
Found at i:79302226 original size:36 final size:36
Alignment explanation
Indices: 79302129--79302227 Score: 94
Period size: 36 Copynumber: 2.8 Consensus size: 36
79302119 CAGCTACAGC
* * *
79302129 AGGTCTAATTATGCTCGATTTAGTTCCTGTTAAAGA
1 AGGTCTAACTATGCTCGATTCAGTTCCCGTTAAAGA
* * ** *
79302165 AGGTTTAGC-ATAATC-ATACATAGTTCCCGTTAAAGA
1 AGGTCTAACTATGCTCGATTC--AGTTCCCGTTAAAGA
79302201 AGGTCTAACTATGCTCGATTCAGTTCC
1 AGGTCTAACTATGCTCGATTCAGTTCC
79302228 TGTAAAATCT
Statistics
Matches: 46, Mismatches: 13, Indels: 8
0.69 0.19 0.12
Matches are distributed among these distances:
34 2 0.04
35 4 0.09
36 33 0.72
37 4 0.09
38 3 0.07
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (36 bp):
AGGTCTAACTATGCTCGATTCAGTTCCCGTTAAAGA
Found at i:79305099 original size:39 final size:39
Alignment explanation
Indices: 79305047--79305174 Score: 202
Period size: 39 Copynumber: 3.3 Consensus size: 39
79305037 TATGAGATTG
79305047 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* *
79305086 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * **
79305125 AATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
79305164 AAAATATCCGG
1 AAAATATCCGG
79305175 GTTAAAAACC
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.21
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
Found at i:79305188 original size:78 final size:76
Alignment explanation
Indices: 79305046--79305200 Score: 195
Period size: 78 Copynumber: 2.0 Consensus size: 76
79305036 GTATGAGATT
* * * *
79305046 GAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATGAGATCCGCA
1 GAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAAACCCGCA
*
79305111 GGCTATATGCTA
66 GGCT-TACGCTA
* * **
79305123 GAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAAATATCCGG-GTTAAAAACCCG
1 GAAA-ATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACAT-AAAACCCG
79305187 CAGGCTTACGCTA
64 CAGGCTTACGCTA
79305200 G
1 G
79305201 TAATGTATTC
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 12 0.18
78 55 0.82
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.21
Consensus pattern (76 bp):
GAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAAACCCGCA
GGCTTACGCTA
Found at i:79306862 original size:13 final size:13
Alignment explanation
Indices: 79306844--79306869 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
79306834 TCACCTAAGT
79306844 ATAAAACATGAAA
1 ATAAAACATGAAA
79306857 ATAAAACATGAAA
1 ATAAAACATGAAA
79306870 TTAAGGCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.08, G:0.08, T:0.15
Consensus pattern (13 bp):
ATAAAACATGAAA
Found at i:79308056 original size:11 final size:11
Alignment explanation
Indices: 79308026--79308059 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
79308016 ATCTATTTCA
*
79308026 ACCATTTCAAT
1 ACCAATTCAAT
79308037 ACTCAATTCAAT
1 AC-CAATTCAAT
79308049 ACCAATTCAAT
1 ACCAATTCAAT
79308060 TAACTAAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.41, C:0.26, G:0.00, T:0.32
Consensus pattern (11 bp):
ACCAATTCAAT
Found at i:79309724 original size:51 final size:51
Alignment explanation
Indices: 79309660--79309795 Score: 173
Period size: 51 Copynumber: 2.7 Consensus size: 51
79309650 TGGAAACATG
*
79309660 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* * * ** * * *
79309711 ATCTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* *
79309762 ATCTTAGAAGATATGATATTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATATTATAATCTTAGAGAT
79309796 TTGATGGTAG
Statistics
Matches: 68, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
51 68 1.00
ACGTcount: A:0.40, C:0.06, G:0.13, T:0.40
Consensus pattern (51 bp):
ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
Found at i:79311646 original size:96 final size:96
Alignment explanation
Indices: 79311480--79311769 Score: 463
Period size: 96 Copynumber: 3.0 Consensus size: 96
79311470 GTGTCCGAGG
* * * * * *
79311480 AAGTCTGTTATCGATGGGAATGATCGAGCAGATACGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
*
79311545 AAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
66 TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
*
79311576 AAGTCTGTCATCGAAGGGAACGATGGAGCAAACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
79311641 TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
66 TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
* * *
79311672 AAGTCTGTCATCAAAGGAAACGATGGAGCAGACAAAGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
* *
79311737 TAAAGCCGAAGCCAAGAGGGCTAAGAAGAGC
66 TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
79311768 AA
1 AA
79311770 AAAGAAGCGA
Statistics
Matches: 180, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 180 1.00
ACGTcount: A:0.37, C:0.18, G:0.33, T:0.12
Consensus pattern (96 bp):
AAGTCTGTCATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
Found at i:79313446 original size:51 final size:51
Alignment explanation
Indices: 79313382--79313517 Score: 173
Period size: 51 Copynumber: 2.7 Consensus size: 51
79313372 TGGAAACATG
*
79313382 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* * * ** * * *
79313433 ATCTTATAAGATATTATTTTATAAAATTACATATCTTAGATAAGATATGTA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* *
79313484 ATCTTAGAAGATATGATATTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATATTATAATCTTAGAGAT
79313518 TTGATGGTAG
Statistics
Matches: 68, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
51 68 1.00
ACGTcount: A:0.41, C:0.06, G:0.12, T:0.40
Consensus pattern (51 bp):
ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
Found at i:79313820 original size:709 final size:707
Alignment explanation
Indices: 79312465--79313876 Score: 2716
Period size: 709 Copynumber: 2.0 Consensus size: 707
79312455 TGGGGGAGAA
79312465 TGTCACGGGCCAGAGTTCAAAGCCCATGACCATCGAACCAAATACATCCGATGGAGGTCTATTAC
1 TGTCACGGGCCAGAGTTCAAAGCCCATGACCATCGAACCAAATACATCCGATGGAGGTCTATTAC
*
79312530 TTAGATGGGGATCATTTGGCCCACGTGAGCTGGCCCGATTCAAGGAACTGTTGGAGAAGCTTGTC
66 TTAGATGGAGATCATTTGGCCCACGTGAGCTGGCCCGATTCAAGGAACTGTTGGAGAAGCTTGTC
79312595 AGATTAAAGTCTGGTTGGCCCAATCGGACTGGCCCGTTGCTTGAAGAGATTGAAGGTCCATCTAC
131 AGATTAAAGTCTGGTTGGCCCAATCGGACTGGCCCGTTGCTTGAAGAGATTGAAGGTCCATCTAC
79312660 AAATATGGAAACATGATATTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGG
196 AAATATGGAAACATGATATTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGG
*
79312725 AATCTTATAAGATATTATTTTATGATTACATATCTTAGATAAGATATGTAATCTTAGAAGATATG
261 AATCTTATAAGATATTATTTTATAATTACATATCTTAGATAAGATATGTAATCTTAGAAGATATG
79312790 ATATTATATTCTTAGAGATTTGATGGTAGGTACCCTTTAATCTCGTCCGTCGATGTAATTGTATC
326 ATATTATATTCTTAGAGATTTGATGGTAGGTACCCTTTAATCTCGTCCGTCGATGTAATTGTATC
79312855 TTGACCGTCGGTTTTGGGGGAGCTCAAGTATAAATAGAGAGCCTCCCCCTCATTTGTACTCACTC
391 TTGACCGTCGGTTTTGGGGGAGCTCAAGTATAAATAGAGAGCCTCCCCCTCATTTGTACTCACTC
79312920 CATTCATTGTTTCATTATTCTTTGTGAATAAGAGAATAGAGAGCATTTACTCAAACACTTTGTGT
456 CATTCATTGTTTCATTATTCTTTGTGAATAAGAGAATAGAGAGCATTTACTCAAACACTTTGTGT
79312985 GCGTCCCTTTCTGTTGTTCTTTATAAGCTTCTTTTGGCATAAGTTTGCTTCTGCTGTACGAGTTA
521 GCGTCCCTTTCTGTTGTTCTTTATAAGCTTCTTTTGGCATAAGTTTGCTTCTGCTGTACGAGTTA
*
79313050 GTGCCTTGGAGGAGTTCTTAAGGAATCCTCATTCGAGTAAAGGCTGACTTGGGCGAGTTTGGACG
586 GTGCCTTGGAGGAGTTCTTAAGGAATCCTAATTCGAGTAAAGGCTGACTTGGGCGAGTTTGGACG
79313115 AGCGAATCGCCTAAGGCCGCACGGATTGCGAGACAAAAAGTCTAGCCCCGTGATAAG
651 AGCGAATCGCCTAAGGCCGCACGGATTGCGAGACAAAAAGTCTAGCCCCGTGATAAG
* *
79313172 TGTCACGGGCCAGAGTTCAAAGCCCGTGACCATCGAACCAAATGCATCCGATGGAGGTCTATTAC
1 TGTCACGGGCCAGAGTTCAAAGCCCATGACCATCGAACCAAATACATCCGATGGAGGTCTATTAC
*
79313237 TTAGATGGAGATCATTTGGCCCATGTGAGCTGGCCCGATTCAAGGAACTGTTGGAGAAGCTTGTC
66 TTAGATGGAGATCATTTGGCCCACGTGAGCTGGCCCGATTCAAGGAACTGTTGGAGAAGCTTGTC
*
79313302 AGATTAAAGTTTGGTTGGCCCAATCGGACTGGCCCGTTGCTTGAAGAGATTGAAGGTCCATCTAC
131 AGATTAAAGTCTGGTTGGCCCAATCGGACTGGCCCGTTGCTTGAAGAGATTGAAGGTCCATCTAC
*
79313367 AAATATGGAAACATGATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGG
196 AAATATGGAAACATGATATTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGG
79313432 AATCTTATAAGATATTATTTTATAAAATTACATATCTTAGATAAGATATGTAATCTTAGAAGATA
261 AATCTTATAAGATATTATTTTAT--AATTACATATCTTAGATAAGATATGTAATCTTAGAAGATA
79313497 TGATATTATATTCTTAGAGATTTGATGGTAGGTACCCTTTAATCTCGTCCGTCGATGTAATTGTA
324 TGATATTATATTCTTAGAGATTTGATGGTAGGTACCCTTTAATCTCGTCCGTCGATGTAATTGTA
79313562 TCTTGACCGTCGGTTTTGGGGGAGCTCAAGTATAAATAGAGAGCCTCCCCCTCATTTGTACTCAC
389 TCTTGACCGTCGGTTTTGGGGGAGCTCAAGTATAAATAGAGAGCCTCCCCCTCATTTGTACTCAC
79313627 TCCATTCATTGTTTCATTATTCTTTGTGAATAAGAGAATAGAGAGCATTTACTCAAACACTTTGT
454 TCCATTCATTGTTTCATTATTCTTTGTGAATAAGAGAATAGAGAGCATTTACTCAAACACTTTGT
79313692 GTGCGTCCCTTTCTGTTGTTCTTTATAAGCTTCTTTTGGCATAAGTTTGCTTCTGCTGTACGAGT
519 GTGCGTCCCTTTCTGTTGTTCTTTATAAGCTTCTTTTGGCATAAGTTTGCTTCTGCTGTACGAGT
*
79313757 TGGTGCCTTGGAGGAGTTCTTAAGGAATCCTAATTCGAGTAAAGGCTGACTTGGGCGAGTTTGGA
584 TAGTGCCTTGGAGGAGTTCTTAAGGAATCCTAATTCGAGTAAAGGCTGACTTGGGCGAGTTTGGA
*
79313822 CGAGCGAATCGCCTAAGGTCGCACGGATTGCGAGACAAAAAGTCTAGCCCCGTGA
649 CGAGCGAATCGCCTAAGGCCGCACGGATTGCGAGACAAAAAGTCTAGCCCCGTGA
79313877 CACTAGTTGC
Statistics
Matches: 693, Mismatches: 10, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
707 277 0.40
709 416 0.60
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.32
Consensus pattern (707 bp):
TGTCACGGGCCAGAGTTCAAAGCCCATGACCATCGAACCAAATACATCCGATGGAGGTCTATTAC
TTAGATGGAGATCATTTGGCCCACGTGAGCTGGCCCGATTCAAGGAACTGTTGGAGAAGCTTGTC
AGATTAAAGTCTGGTTGGCCCAATCGGACTGGCCCGTTGCTTGAAGAGATTGAAGGTCCATCTAC
AAATATGGAAACATGATATTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGG
AATCTTATAAGATATTATTTTATAATTACATATCTTAGATAAGATATGTAATCTTAGAAGATATG
ATATTATATTCTTAGAGATTTGATGGTAGGTACCCTTTAATCTCGTCCGTCGATGTAATTGTATC
TTGACCGTCGGTTTTGGGGGAGCTCAAGTATAAATAGAGAGCCTCCCCCTCATTTGTACTCACTC
CATTCATTGTTTCATTATTCTTTGTGAATAAGAGAATAGAGAGCATTTACTCAAACACTTTGTGT
GCGTCCCTTTCTGTTGTTCTTTATAAGCTTCTTTTGGCATAAGTTTGCTTCTGCTGTACGAGTTA
GTGCCTTGGAGGAGTTCTTAAGGAATCCTAATTCGAGTAAAGGCTGACTTGGGCGAGTTTGGACG
AGCGAATCGCCTAAGGCCGCACGGATTGCGAGACAAAAAGTCTAGCCCCGTGATAAG
Found at i:79314575 original size:27 final size:27
Alignment explanation
Indices: 79314544--79314599 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
79314534 TCTCTTAAGT
79314544 ATGTCAAATGAATTATGTATGAATTTC
1 ATGTCAAATGAATTATGTATGAATTTC
79314571 ATGTCAAATGAATTATGTATGAATTTC
1 ATGTCAAATGAATTATGTATGAATTTC
79314598 AT
1 AT
79314600 AAATTGAGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.41
Consensus pattern (27 bp):
ATGTCAAATGAATTATGTATGAATTTC
Found at i:79322870 original size:15 final size:14
Alignment explanation
Indices: 79322831--79322871 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
79322821 AAAAAGACAA
*
79322831 AAAAAAATTCTTTG
1 AAAAAAATTTTTTG
79322845 AAAAAATATTTTTTG
1 AAAAAA-ATTTTTTG
79322860 ACAAAAAATTTT
1 A-AAAAAATTTT
79322872 AGCTTTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 6 0.25
15 13 0.54
16 5 0.21
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.39
Consensus pattern (14 bp):
AAAAAAATTTTTTG
Found at i:79339294 original size:12 final size:11
Alignment explanation
Indices: 79339277--79339310 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 11
79339267 CTTGTTTTTA
79339277 TATTATTTATT
1 TATTATTTATT
79339288 TACTTATTTATT
1 TA-TTATTTATT
*
79339300 TATTACTTATT
1 TATTATTTATT
79339311 ATTTTAGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (11 bp):
TATTATTTATT
Found at i:79339305 original size:15 final size:16
Alignment explanation
Indices: 79339274--79339314 Score: 59
Period size: 15 Copynumber: 2.6 Consensus size: 16
79339264 CCCCTTGTTT
79339274 TTATATTATTTATTTAC
1 TTAT-TTATTTATTTAC
79339291 TTATTTATTTA-TTAC
1 TTATTTATTTATTTAC
79339306 TTA-TTATTT
1 TTATTTATTT
79339315 TAGTTTGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.25
15 7 0.29
16 7 0.29
17 4 0.17
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (16 bp):
TTATTTATTTATTTAC
Found at i:79341408 original size:46 final size:45
Alignment explanation
Indices: 79341355--79341528 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 45
79341345 ATATGTGTAT
79341355 TAGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATAAGAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCAGCC-TATTATAAGAGC
* * * * *
79341401 TAGTGTAAGACATGTCTGGGATATGCGTCGGTCTTGAGATATATA-AGC
1 TAGTGTAAGACATGTCTGGGACATGCATCAG-CCT-A-TTATA-AGAGC
* ** *
79341449 CAGTGTAAGACATGTCTATGACATGCATCAG--TATTGAGACAAGAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCAGCCTATT---ATAAGAGC
79341495 TAGTGTAAGACATGTCTGGGACATGCATCAGCCT
1 TAGTGTAAGACATGTCTGGGACATGCATCAGCCT
79341529 CGAGATATAG
Statistics
Matches: 102, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
43 1 0.01
44 1 0.01
45 2 0.02
46 62 0.61
47 2 0.02
48 33 0.32
49 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (45 bp):
TAGTGTAAGACATGTCTGGGACATGCATCAGCCTATTATAAGAGC
Found at i:79341463 original size:94 final size:92
Alignment explanation
Indices: 79341356--79341567 Score: 246
Period size: 94 Copynumber: 2.3 Consensus size: 92
79341346 TATGTGTATT
*
79341356 AGTGTAAGACATGTCTGGGACATGCATCAGCCATATT-ATAAGAGCTAGTGTAAGACATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAG---TATTGACAAGAGCTAGTGTAAGACATGTCTGG
* * * * * * *
79341420 GATATGCGTCGGTCTTGAGATATATAAGCC
63 GACATGCATCAGCCTCGAGATATAGAAACC
**
79341450 AGTGTAAGACATGTCTATGACATGCATCAGTATTGAGACAAGAGCTAGTGTAAGACATGTCTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGTATT--GACAAGAGCTAGTGTAAGACATGTCTGGG
*
79341515 ACATGCATCAGCCTCGAGATATAGAAACT
64 ACATGCATCAGCCTCGAGATATAGAAACC
* * *
79341544 AGTGTAAAACCTGCCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
79341568 GCGTCAGCTT
Statistics
Matches: 99, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
91 4 0.04
94 95 0.96
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (92 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGTATTGACAAGAGCTAGTGTAAGACATGTCTGGGAC
ATGCATCAGCCTCGAGATATAGAAACC
Found at i:79341675 original size:49 final size:49
Alignment explanation
Indices: 79341587--79341704 Score: 157
Period size: 49 Copynumber: 2.4 Consensus size: 49
79341577 TGTTGTGTGT
*
79341587 CAGTGTAAGACCTGTTTGGGACATGGCATCGACACCGATAGATGAGAGC
1 CAGTGTAAGACCTGTTTGGGACATGGCATCGACACCGATAGATGAAAGC
* * * * *
79341636 CAGTGTAAAACCTGTTTGGGACATGGCATCAGTC-TCGATATATGAAAGT
1 CAGTGTAAGACCTGTTTGGGACATGGCATC-GACACCGATAGATGAAAGC
*
79341685 CAGTGTAAGACCTGTCTGGG
1 CAGTGTAAGACCTGTTTGGG
79341705 TTATATTGGG
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
49 58 0.97
50 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (49 bp):
CAGTGTAAGACCTGTTTGGGACATGGCATCGACACCGATAGATGAAAGC
Found at i:79347909 original size:696 final size:696
Alignment explanation
Indices: 79346578--79347962 Score: 2662
Period size: 696 Copynumber: 2.0 Consensus size: 696
79346568 GACATTTCAG
*
79346578 AGTTTGTTTCTAAGGGTCTAGTTTGTCAGCAAGTGAAAGCCGAACACCAGGTACCTTCGGGTTTA
1 AGTTTGTTTCTAAGGGTCTAGTTTGTCAGCAAGTGAAAGCCGAACACCAAGTACCTTCGGGTTTA
*
79346643 CTTTAACCTATGATGGTTCCCGAATGGAAATGGGACTGTGTAACCATGGATATCGTGTCAGAGTT
66 CTTTAACCTATGATGGTTCCCGAATGGAAATGGGACTGTGTAACCATGGATATCATGTCAGAGTT
79346708 GCCTTTAACGCCAAGGAAAAAGGATTCCGTTTGGGTTGTTGTTGATAGGCTTACCAAGTCGGCAC
131 GCCTTTAACGCCAAGGAAAAAGGATTCCGTTTGGGTTGTTGTTGATAGGCTTACCAAGTCGGCAC
79346773 ATTTTATACCGATGCGTACCGACTATTCCCTTAGGAAATTGGCTGAATTGTATGTTTCCGAGATC
196 ATTTTATACCGATGCGTACCGACTATTCCCTTAGGAAATTGGCTGAATTGTATGTTTCCGAGATC
*
79346838 GTGAGACTTCATGGAGTACCCTTATTGATTATTTCAGATAGAGATCTGAGGTTTACCTCACGGTT
261 GTGAGACTTCATGGAGTACCCTTATTGATTATTTCAGATAGAGATCTGAGGTTTACCTCACGATT
*
79346903 TTAGAAGATGTTACAAGAGGCATTGGGAACAAAACTAAATTTTAGCACGTTATTTTACCCGCAAA
326 TTAGAAGATGTTACAAGAGGCATTGGGAACAAAACTAAATTCTAGCACGTTATTTTACCCGCAAA
*
79346968 CTGATGGCCAGTCGGAAAGAGTGATTCAGATATTAGAAGACATGTTCCAGTATTGTGTTCTTGAG
391 CTGACGGCCAGTCGGAAAGAGTGATTCAGATATTAGAAGACATGTTCCAGTATTGTGTTCTTGAG
79347033 TTTCAAGGTAGCTGGAAAAGCTATTTACCACTAGTAGAGTTCACTTACAGCTATAGTTATCAGTT
456 TTTCAAGGTAGCTGGAAAAGCTATTTACCACTAGTAGAGTTCACTTACAGCTATAGTTATCAGTT
* *
79347098 AAGTTTGAAAATGACGCCTTATAAGGCTTTGTATTGACGTAAGTGTCGAACGCCCTTATATTGGA
521 AAGTTTGAAAATGACACCTTATAAAGCTTTGTATTGACGTAAGTGTCGAACGCCCTTATATTGGA
* *
79347163 CCGAACTTAAAGAAAATTAGATTCATAGGGTTGACTTGGTCAAAGAAACCGAAGAGAAAGTTAAG
586 CCGAACTTAAAAAAAATTAGATTCACAGGGTTGACTTGGTCAAAGAAACCGAAGAGAAAGTTAAG
79347228 GTGATTCGTGAATGTTTGAAGGCCGCTTCAGATAGATAGGTGACTA
651 GTGATTCGTGAATGTTTGAAGGCCGCTTCAGATAGATAGGTGACTA
79347274 AGTTTGTTTCTAAGGGTCTAGTTTGTCAGCAAGTGAAAGCCGAACACCAAGTACCTTCGGGTTTA
1 AGTTTGTTTCTAAGGGTCTAGTTTGTCAGCAAGTGAAAGCCGAACACCAAGTACCTTCGGGTTTA
79347339 CTTTAACCTATGATGGTTCCCGAATGGAAATGGGACTGTGTAACCATGGATATCATGTCAGAGTT
66 CTTTAACCTATGATGGTTCCCGAATGGAAATGGGACTGTGTAACCATGGATATCATGTCAGAGTT
79347404 GCCTTTAACGCCAAGGAAAAAGGATTCCGTTTGGGTTGTTGTTGATAGGCTTACCAAGTCGGCAC
131 GCCTTTAACGCCAAGGAAAAAGGATTCCGTTTGGGTTGTTGTTGATAGGCTTACCAAGTCGGCAC
79347469 ATTTTATACCGATGCGTACCGACTATTCCCTTAGGAAATTGGCTGAATTGTATGTTTCCGAGATC
196 ATTTTATACCGATGCGTACCGACTATTCCCTTAGGAAATTGGCTGAATTGTATGTTTCCGAGATC
79347534 GTGAGACTTCATGGAGTACCCTTATTGATTATTTCAGATAGAGATCTGAGGTTTACCTCACGATT
261 GTGAGACTTCATGGAGTACCCTTATTGATTATTTCAGATAGAGATCTGAGGTTTACCTCACGATT
79347599 TTAGAAGATGTTACAAGAGGCATTGGGAACAAAACTAAATTCTAGCACGTTATTTTACCCGCAAA
326 TTAGAAGATGTTACAAGAGGCATTGGGAACAAAACTAAATTCTAGCACGTTATTTTACCCGCAAA
* *
79347664 CTGACGGCCAGTCGGAAAGAGTGATTTAGATATTAGAAGACATGTTCCAGTGTTGTGTTCTTGAG
391 CTGACGGCCAGTCGGAAAGAGTGATTCAGATATTAGAAGACATGTTCCAGTATTGTGTTCTTGAG
79347729 TTTCAAGGTAGCTGGAAAAGCTATTTACCACTAGTAGAGTTCACTTACAGCTATAGTTATCAGTT
456 TTTCAAGGTAGCTGGAAAAGCTATTTACCACTAGTAGAGTTCACTTACAGCTATAGTTATCAGTT
79347794 AAGTTTGAAAATGACACCTTATAAAGCTTTGTATTGACGTAAGTGTCGAACGCCCTTATATTGGA
521 AAGTTTGAAAATGACACCTTATAAAGCTTTGTATTGACGTAAGTGTCGAACGCCCTTATATTGGA
*
79347859 CCGAACTTAAAAAAAATTAGATTCACGGGGTTGACTTGGTCAAAGAAACCGAAGAGAAAGTTAAG
586 CCGAACTTAAAAAAAATTAGATTCACAGGGTTGACTTGGTCAAAGAAACCGAAGAGAAAGTTAAG
79347924 GTGATTCGTGAATGTTTGAAGGCCGCTTCAGATAGATAG
651 GTGATTCGTGAATGTTTGAAGGCCGCTTCAGATAGATAG
79347963 AAATCCTACA
Statistics
Matches: 677, Mismatches: 12, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
696 677 1.00
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (696 bp):
AGTTTGTTTCTAAGGGTCTAGTTTGTCAGCAAGTGAAAGCCGAACACCAAGTACCTTCGGGTTTA
CTTTAACCTATGATGGTTCCCGAATGGAAATGGGACTGTGTAACCATGGATATCATGTCAGAGTT
GCCTTTAACGCCAAGGAAAAAGGATTCCGTTTGGGTTGTTGTTGATAGGCTTACCAAGTCGGCAC
ATTTTATACCGATGCGTACCGACTATTCCCTTAGGAAATTGGCTGAATTGTATGTTTCCGAGATC
GTGAGACTTCATGGAGTACCCTTATTGATTATTTCAGATAGAGATCTGAGGTTTACCTCACGATT
TTAGAAGATGTTACAAGAGGCATTGGGAACAAAACTAAATTCTAGCACGTTATTTTACCCGCAAA
CTGACGGCCAGTCGGAAAGAGTGATTCAGATATTAGAAGACATGTTCCAGTATTGTGTTCTTGAG
TTTCAAGGTAGCTGGAAAAGCTATTTACCACTAGTAGAGTTCACTTACAGCTATAGTTATCAGTT
AAGTTTGAAAATGACACCTTATAAAGCTTTGTATTGACGTAAGTGTCGAACGCCCTTATATTGGA
CCGAACTTAAAAAAAATTAGATTCACAGGGTTGACTTGGTCAAAGAAACCGAAGAGAAAGTTAAG
GTGATTCGTGAATGTTTGAAGGCCGCTTCAGATAGATAGGTGACTA
Found at i:79349757 original size:48 final size:48
Alignment explanation
Indices: 79349684--79349851 Score: 169
Period size: 48 Copynumber: 3.5 Consensus size: 48
79349674 ACATTATGAG
* * * * *
79349684 AGCCAGTGTAGGACATGTCTGGGACATGCGTCAGCTTTGAGATATACA
1 AGCCAGTGTAAGACATGTCTAGGACATGCATCGGCATTGAGATATACA
* * ** *
79349732 AGCCAGTGTAAGACATGTTTAGGACATGCATTGGCATTGAGA-CGA-G
1 AGCCAGTGTAAGACATGTCTAGGACATGCATCGGCATTGAGATATACA
* * * *
79349778 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACA
1 AGCCAGTGTAAGACATGTCTAGGACATGCATCGGCATTGAGATATACA
* * *
79349826 AGCTAGTGTAAAACCTGTCTAGGACA
1 AGCCAGTGTAAGACATGTCTAGGACA
79349852 CGGGTGTGGG
Statistics
Matches: 96, Mismatches: 22, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
46 36 0.38
47 2 0.02
48 58 0.60
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (48 bp):
AGCCAGTGTAAGACATGTCTAGGACATGCATCGGCATTGAGATATACA
Found at i:79349793 original size:94 final size:94
Alignment explanation
Indices: 79349681--79349851 Score: 252
Period size: 94 Copynumber: 1.8 Consensus size: 94
79349671 GCCACATTAT
* * * * *
79349681 GAGAGCCAGTGTAGGACATGTCTGGGACATGCGTCAGCTTTGAGATATACAAGCCAGTGTAAGAC
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATACAAGCCAGTGTAAAAC
*
79349746 ATGTTTAGGACATGCATTGGCATTGAGAC
66 ATGTCTAGGACATGCATTGGCATTGAGAC
* * *
79349775 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAAAC
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATACAAGCCAGTGTAAAAC
*
79349840 CTGTCTAGGACA
66 ATGTCTAGGACA
79349852 CGGGTGTGGG
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
94 67 1.00
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (94 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATACAAGCCAGTGTAAAAC
ATGTCTAGGACATGCATTGGCATTGAGAC
Found at i:79349803 original size:46 final size:46
Alignment explanation
Indices: 79349642--79349808 Score: 135
Period size: 46 Copynumber: 3.6 Consensus size: 46
79349632 TATGTGTGCT
* * *
79349642 AGTGTAAGACATGTCTGAGACATGCATCAGCCACATT---ATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCAT-AG--GCATTGAGAAGAGAGCC
* * * * *
79349688 AGTGTAGGACATGTCTGGGACATGCGTCA-GCTTTGAGATATACAAGCC
1 AGTGTAAGACATGTCTGGGACATGCAT-AGGCATTGAGA-AGA-GAGCC
* * * * *
79349736 AGTGTAAGACATGTTTAGGACATGCATTGGCATTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATAGGCATTGAGAAGAGAGCC
79349782 AGTGTAAGACATGTCTGGGACATGCAT
1 AGTGTAAGACATGTCTGGGACATGCAT
79349809 CGGCCTCGAG
Statistics
Matches: 95, Mismatches: 20, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
43 3 0.03
46 55 0.58
47 2 0.02
48 35 0.37
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATAGGCATTGAGAAGAGAGCC
Found at i:79350983 original size:11 final size:11
Alignment explanation
Indices: 79350967--79350996 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
79350957 ATTGAGTCCA
79350967 TTTATTTTATT
1 TTTATTTTATT
79350978 TTTATTTTATT
1 TTTATTTTATT
*
79350989 TATATTTT
1 TTTATTTT
79350997 CTTAGACTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:79376878 original size:25 final size:24
Alignment explanation
Indices: 79376772--79376917 Score: 188
Period size: 25 Copynumber: 6.0 Consensus size: 24
79376762 GCTTTATCAT
*
79376772 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
79376797 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
79376820 ATAACTAGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
79376844 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
*
79376869 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
* *
79376894 ATAGCTAGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
79376918 CACTTCCTCC
Statistics
Matches: 111, Mismatches: 7, Indels: 7
0.89 0.06 0.06
Matches are distributed among these distances:
23 17 0.15
24 40 0.36
25 54 0.49
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:79376887 original size:49 final size:49
Alignment explanation
Indices: 79376763--79376915 Score: 186
Period size: 47 Copynumber: 3.1 Consensus size: 49
79376753 AGCATAGCTG
*
79376763 CTTTATCATATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCC
1 CTTTATC--ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCC
* *
79376814 CTTT-TAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCC
1 CTTTATCATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCC
* * *
79376862 CTTTATCATAACTGGGGCATAAGCCCTTTATCATAGCTAGGGCATAAGCC
1 CTTTATCATAACTGGGGCATAAGCCCTTT-TAATAACTGGGGCATAAGCC
79376912 CTTT
1 CTTT
79376916 TACACTTCCT
Statistics
Matches: 90, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
47 22 0.24
48 20 0.22
49 22 0.24
50 22 0.24
51 4 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (49 bp):
CTTTATCATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCC
Found at i:79376992 original size:20 final size:20
Alignment explanation
Indices: 79376967--79377005 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
79376957 TATGAATACA
79376967 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
79376987 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
79377006 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:79377011 original size:20 final size:20
Alignment explanation
Indices: 79376968--79377012 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
79376958 ATGAATACAT
**
79376968 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
79376988 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
79377008 CATGT
1 CATGT
79377013 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:79382028 original size:25 final size:24
Alignment explanation
Indices: 79381914--79382059 Score: 188
Period size: 25 Copynumber: 6.0 Consensus size: 24
79381904 GCTTTATCAT
*
79381914 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
79381939 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
79381962 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
79381986 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
* * *
79382011 ATAGCTGAGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
*
79382036 ATAGCTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
79382060 CACTTCCTCC
Statistics
Matches: 112, Mismatches: 6, Indels: 7
0.90 0.05 0.06
Matches are distributed among these distances:
23 18 0.16
24 41 0.37
25 53 0.47
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:79382130 original size:9 final size:9
Alignment explanation
Indices: 79382116--79382172 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
79382106 ACATCATGTG
79382116 CATATCATA
1 CATATCATA
*
79382125 CATATCATGTG
1 CATATCA--TA
79382136 CATATCATA
1 CATATCATA
* *
79382145 CATGTCATGTG
1 CATATCA--TA
79382156 CATATCATA
1 CATATCATA
79382165 CATATCAT
1 CATATCAT
79382173 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:79382133 original size:20 final size:20
Alignment explanation
Indices: 79382108--79382174 Score: 125
Period size: 20 Copynumber: 3.4 Consensus size: 20
79382098 TTATGAATAC
79382108 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
79382128 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
79382148 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
79382168 ATCATGT
1 ATCATGT
79382175 TTATCAAAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:79382139 original size:11 final size:11
Alignment explanation
Indices: 79382108--79382163 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
79382098 TTATGAATAC
79382108 ATCATGTGCAT
1 ATCATGTGCAT
*
79382119 ATCA--TACAT
1 ATCATGTGCAT
79382128 ATCATGTGCAT
1 ATCATGTGCAT
*
79382139 ATCA--TACAT
1 ATCATGTGCAT
*
79382148 GTCATGTGCAT
1 ATCATGTGCAT
79382159 ATCAT
1 ATCAT
79382164 ACATATCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:79382243 original size:25 final size:25
Alignment explanation
Indices: 79382211--79382258 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
79382201 ATATATAAAC
* *
79382211 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
79382236 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
79382259 ATATTATAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:79384165 original size:66 final size:66
Alignment explanation
Indices: 79384083--79384215 Score: 266
Period size: 66 Copynumber: 2.0 Consensus size: 66
79384073 TAGAATTTGC
79384083 CTACAACAATAGTTTTCAAACAAGTTTGAAAATGGTGCCTTATGAGGCCTTGTATGGCAGGAAAT
1 CTACAACAATAGTTTTCAAACAAGTTTGAAAATGGTGCCTTATGAGGCCTTGTATGGCAGGAAAT
79384148 G
66 G
79384149 CTACAACAATAGTTTTCAAACAAGTTTGAAAATGGTGCCTTATGAGGCCTTGTATGGCAGGAAAT
1 CTACAACAATAGTTTTCAAACAAGTTTGAAAATGGTGCCTTATGAGGCCTTGTATGGCAGGAAAT
79384214 G
66 G
79384215 C
1 C
79384216 CGAACTCCAT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 67 1.00
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.29
Consensus pattern (66 bp):
CTACAACAATAGTTTTCAAACAAGTTTGAAAATGGTGCCTTATGAGGCCTTGTATGGCAGGAAAT
G
Found at i:79389811 original size:20 final size:20
Alignment explanation
Indices: 79389786--79389826 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
79389776 AGCAAAAAGA
79389786 AAGAAAAATGGTCATTCATC
1 AAGAAAAATGGTCATTCATC
79389806 AAGAAAAATGGTCATTCATC
1 AAGAAAAATGGTCATTCATC
79389826 A
1 A
79389827 TCTTCTTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.24
Consensus pattern (20 bp):
AAGAAAAATGGTCATTCATC
Found at i:79390526 original size:10 final size:10
Alignment explanation
Indices: 79390511--79390539 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
79390501 GAAATGTTTG
79390511 ATGATATAAT
1 ATGATATAAT
79390521 ATGATATAAT
1 ATGATATAAT
79390531 A-GATATAAT
1 ATGATATAAT
79390540 TGTTTATAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 8 0.42
10 11 0.58
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (10 bp):
ATGATATAAT
Found at i:79390899 original size:37 final size:36
Alignment explanation
Indices: 79390785--79390909 Score: 119
Period size: 37 Copynumber: 3.4 Consensus size: 36
79390775 AGTAATTGGA
*
79390785 GTGTTATCGGGTGGATTAGCTATTATGAGCATTTGGT-
1 GTGTTATCGGGTGGATTAGCTCTTATGAGCA-TT-GTC
* * * **
79390822 GTTTTATCGAGCGGATTAGCTCTTATGAGCATCTAAC
1 GTGTTATCGGGTGGATTAGCTCTTATGAGCAT-TGTC
* *
79390859 GTGTTATCGGGTGGATTAACTCTTACGAGCGATTGTC
1 GTGTTATCGGGTGGATTAGCTCTTATGAGC-ATTGTC
*
79390896 GTGTT-TCGGTTGGA
1 GTGTTATCGGGTGGA
79390910 ATATATATGT
Statistics
Matches: 71, Mismatches: 14, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
36 9 0.13
37 60 0.85
38 2 0.03
ACGTcount: A:0.19, C:0.14, G:0.30, T:0.38
Consensus pattern (36 bp):
GTGTTATCGGGTGGATTAGCTCTTATGAGCATTGTC
Found at i:79391332 original size:18 final size:18
Alignment explanation
Indices: 79391309--79391349 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
79391299 GTAAAATTTT
79391309 AAGTATGATCTTAAATGA
1 AAGTATGATCTTAAATGA
79391327 AAGTATGATCTTAAATGA
1 AAGTATGATCTTAAATGA
79391345 AAGTA
1 AAGTA
79391350 GTTAACTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.46, C:0.05, G:0.17, T:0.32
Consensus pattern (18 bp):
AAGTATGATCTTAAATGA
Found at i:79391930 original size:33 final size:33
Alignment explanation
Indices: 79391892--79391958 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
79391882 TAGGCTATTG
79391892 TCCAAGCCTTATGTTGACCTTATTTTTCCTCCA
1 TCCAAGCCTTATGTTGACCTTATTTTTCCTCCA
79391925 TCCAAGCCTTATGTTGACCTTATTTTTCCTCCA
1 TCCAAGCCTTATGTTGACCTTATTTTTCCTCCA
79391958 T
1 T
79391959 ACTTTTACAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.18, C:0.30, G:0.09, T:0.43
Consensus pattern (33 bp):
TCCAAGCCTTATGTTGACCTTATTTTTCCTCCA
Found at i:79395833 original size:14 final size:15
Alignment explanation
Indices: 79395805--79395833 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
79395795 CTCTATCAAG
79395805 GACAAGAATAATCCA
1 GACAAGAATAATCCA
79395820 GACAAGAA-AATCCA
1 GACAAGAATAATCCA
79395834 TATGAACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.55, C:0.21, G:0.14, T:0.10
Consensus pattern (15 bp):
GACAAGAATAATCCA
Found at i:79396532 original size:15 final size:15
Alignment explanation
Indices: 79396512--79396540 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
79396502 GAAGCCCAGA
79396512 ATAAGGAAATCCAAG
1 ATAAGGAAATCCAAG
79396527 ATAAGGAAATCCAA
1 ATAAGGAAATCCAA
79396541 TTTACAACAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.14
Consensus pattern (15 bp):
ATAAGGAAATCCAAG
Found at i:79402037 original size:13 final size:13
Alignment explanation
Indices: 79402015--79402074 Score: 52
Period size: 13 Copynumber: 4.6 Consensus size: 13
79402005 TTTGACAATG
*
79402015 CTTTTAAAAAGTA
1 CTTTTGAAAAGTA
79402028 CTTTTGAAAAGTA
1 CTTTTGAAAAGTA
* *
79402041 -TTGTGGAAAAGTG
1 CTT-TTGAAAAGTA
*
79402054 CTTTT-AAGAAGTG
1 CTTTTGAA-AAGTA
79402067 CTTTTGAA
1 CTTTTGAA
79402075 CAGTTTGGTT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
12 4 0.10
13 31 0.79
14 4 0.10
ACGTcount: A:0.35, C:0.07, G:0.20, T:0.38
Consensus pattern (13 bp):
CTTTTGAAAAGTA
Found at i:79404221 original size:71 final size:72
Alignment explanation
Indices: 79404106--79404365 Score: 366
Period size: 72 Copynumber: 3.7 Consensus size: 72
79404096 CCTGTGAATC
* * * * **
79404106 AATTTTATATCC-AAAATCATATATAAACAACTATTGATAAAACTA-ATTTA-GTATAAATAAGT
1 AATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGA-TTACACATAAATAAGT
79404168 AGAACATA
65 AGAACATA
* *
79404176 AATTTAATATCCAAAAATCAAATATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTA
1 AATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTA
* *
79404241 AAATATA
66 GAACATA
* *
79404248 AATTCAATATCCAAAAACCAAACATAAACAACCATTGATAAAACTAGATTACACATAAATAAGTA
1 AATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTA
79404313 GAACATA
66 GAACATA
*
79404320 AA-TTAATATCCAAAAACCAAACATAAATAACTATTGATAAAACTAG
1 AATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAG
79404366 TTTAGCATTG
Statistics
Matches: 172, Mismatches: 15, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
70 11 0.06
71 76 0.44
72 85 0.49
ACGTcount: A:0.55, C:0.13, G:0.05, T:0.27
Consensus pattern (72 bp):
AATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTA
GAACATA
Found at i:79404813 original size:18 final size:18
Alignment explanation
Indices: 79404790--79404859 Score: 113
Period size: 18 Copynumber: 3.9 Consensus size: 18
79404780 CATTTCCATC
*
79404790 AATGTGAGCATCATTTGA
1 AATGTGAACATCATTTGA
79404808 AATGTGAACATCATTTGA
1 AATGTGAACATCATTTGA
* *
79404826 AATCTGAACATCATTTAA
1 AATGTGAACATCATTTGA
79404844 AATGTGAACATCATTT
1 AATGTGAACATCATTT
79404860 CTCACATTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 48 1.00
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34
Consensus pattern (18 bp):
AATGTGAACATCATTTGA
Found at i:79406303 original size:11 final size:10
Alignment explanation
Indices: 79406287--79406326 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
79406277 AGGGAAGTCT
79406287 ATTTATTTTCC
1 ATTTA-TTTCC
*
79406298 ATTTATTCCC
1 ATTTATTTCC
79406308 ATTTATTTCC
1 ATTTATTTCC
79406318 AATTTATTT
1 -ATTTATTT
79406327 TAAATTTCAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 13 0.50
11 13 0.50
ACGTcount: A:0.23, C:0.17, G:0.00, T:0.60
Consensus pattern (10 bp):
ATTTATTTCC
Found at i:79410586 original size:31 final size:31
Alignment explanation
Indices: 79410548--79410609 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
79410538 AAACTTGGGA
*
79410548 GAATGAGGAAAAGTGACCGAATTGCCACTAC
1 GAATGAGGAAAAGTGACCGAATTACCACTAC
*
79410579 GAATGAGGAAAAGTGGCCGAATTACCACTAC
1 GAATGAGGAAAAGTGACCGAATTACCACTAC
79410610 CAATTTCATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.39, C:0.19, G:0.26, T:0.16
Consensus pattern (31 bp):
GAATGAGGAAAAGTGACCGAATTACCACTAC
Found at i:79415808 original size:28 final size:28
Alignment explanation
Indices: 79415776--79415834 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
79415766 TGTCTATCGG
*
79415776 TTGTACTACAGTATCAATATACAGTAAC
1 TTGTACTACAGTATCAATATACACTAAC
79415804 TTGTACTACAGTATCAATATACACTAAC
1 TTGTACTACAGTATCAATATACACTAAC
79415832 TTG
1 TTG
79415835 AGTGTTTTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.34
Consensus pattern (28 bp):
TTGTACTACAGTATCAATATACACTAAC
Found at i:79416996 original size:45 final size:45
Alignment explanation
Indices: 79416946--79417247 Score: 398
Period size: 45 Copynumber: 6.8 Consensus size: 45
79416936 TCTACGACAC
*
79416946 AATCTACATGTATGAGTTCGCCATATCTATGAATCTTCTACTATG
1 AATCTGCATGTATGAGTTCGCCATATCTATGAATCTTCTACTATG
* * *
79416991 AATCTACATGTATGATTTCGCCATATCTATGAATCTTCTTCTATG
1 AATCTGCATGTATGAGTTCGCCATATCTATGAATCTTCTACTATG
* * *
79417036 AATCCGCA-GTATGAGTTCGCTATATCTATGAATCTTCTTCTATG
1 AATCTGCATGTATGAGTTCGCCATATCTATGAATCTTCTACTATG
* * *
79417080 AATCTACA-ATATGAGTTTGCCATATCTATGAATCTTCTACTATG
1 AATCTGCATGTATGAGTTCGCCATATCTATGAATCTTCTACTATG
* **
79417124 AAT-TGGCATGTATGAGTTCGCCATATCTATGAATATTCTTTTATG
1 AATCT-GCATGTATGAGTTCGCCATATCTATGAATCTTCTACTATG
* * *
79417169 AACCTGCATGTATGAGTTCACTATATCTATGAATCTTCTACTAT-
1 AATCTGCATGTATGAGTTCGCCATATCTATGAATCTTCTACTATG
79417213 AAGT-TCGCATGTATGAGTTCGCCATATCTATGAAT
1 AA-TCT-GCATGTATGAGTTCGCCATATCTATGAAT
79417248 TCAATTCTGC
Statistics
Matches: 225, Mismatches: 27, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
43 1 0.00
44 80 0.36
45 143 0.64
46 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (45 bp):
AATCTGCATGTATGAGTTCGCCATATCTATGAATCTTCTACTATG
Found at i:79417080 original size:89 final size:90
Alignment explanation
Indices: 79416952--79417247 Score: 429
Period size: 89 Copynumber: 3.3 Consensus size: 90
79416942 ACACAATCTA
*
79416952 CATGTATGAGTTCGCCATATCTATGAATCTTCTACTATGAATCTACATGTATGATTTCGCCATAT
1 CATGTATGAGTTCGCCATATCTATGAATCTTCTTCTATGAATCTACATGTATGATTTCGCCATAT
* *
79417017 CTATGAATCTTCTTCTATGAATCCG
66 CTATGAATCTTCTACTATGAATTCG
* *
79417042 CA-GTATGAGTTCGCTATATCTATGAATCTTCTTCTATGAATCTACA-ATATGAGTTT-GCCATA
1 CATGTATGAGTTCGCCATATCTATGAATCTTCTTCTATGAATCTACATGTATGA-TTTCGCCATA
*
79417104 TCTATGAATCTTCTACTATGAATTGG
65 TCTATGAATCTTCTACTATGAATTCG
* * * * * * *
79417130 CATGTATGAGTTCGCCATATCTATGAATATTCTTTTATGAACCTGCATGTATGAGTTCACTATAT
1 CATGTATGAGTTCGCCATATCTATGAATCTTCTTCTATGAATCTACATGTATGATTTCGCCATAT
79417195 CTATGAATCTTCTACTAT-AAGTTCG
66 CTATGAATCTTCTACTATGAA-TTCG
79417220 CATGTATGAGTTCGCCATATCTATGAAT
1 CATGTATGAGTTCGCCATATCTATGAAT
79417248 TCAATTCTGC
Statistics
Matches: 185, Mismatches: 16, Indels: 10
0.88 0.08 0.05
Matches are distributed among these distances:
88 36 0.19
89 88 0.48
90 61 0.33
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (90 bp):
CATGTATGAGTTCGCCATATCTATGAATCTTCTTCTATGAATCTACATGTATGATTTCGCCATAT
CTATGAATCTTCTACTATGAATTCG
Found at i:79417169 original size:133 final size:134
Alignment explanation
Indices: 79416946--79417247 Score: 443
Period size: 133 Copynumber: 2.3 Consensus size: 134
79416936 TCTACGACAC
*
79416946 AATCTACATGTATGAGTTCGCCATATCTATGAATCTTCTACTATGAATCTACATGTATGATTTCG
1 AATCTACATGTATGAGTTCGCCATATCTATGAATCTTCTACTATGAATCTACATGTATGAGTTCG
* *
79417011 CCATATCTATGAATCTTCTTCTATGAATCC-GCA-GTATGAGTTCGCTATATCTATGAATCTTCT
66 CCATATCTATGAATATTCTTCTATGAA-CCTGCATGTATGAGTTCACTATATCTATGAATCTTCT
*
79417074 TCTAT
130 ACTAT
* * *
79417079 GAATCTACA-ATATGAGTTTGCCATATCTATGAATCTTCTACTATGAAT-TGGCATGTATGAGTT
1 -AATCTACATGTATGAGTTCGCCATATCTATGAATCTTCTACTATGAATCT-ACATGTATGAGTT
*
79417142 CGCCATATCTATGAATATTCTTTTATGAACCTGCATGTATGAGTTCACTATATCTATGAATCTTC
64 CGCCATATCTATGAATATTCTTCTATGAACCTGCATGTATGAGTTCACTATATCTATGAATCTTC
79417207 TACTAT
129 TACTAT
*
79417213 AAGT-TCGCATGTATGAGTTCGCCATATCTATGAAT
1 AA-TCT-ACATGTATGAGTTCGCCATATCTATGAAT
79417248 TCAATTCTGC
Statistics
Matches: 151, Mismatches: 11, Indels: 11
0.87 0.06 0.06
Matches are distributed among these distances:
132 3 0.02
133 81 0.54
134 44 0.29
135 23 0.15
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (134 bp):
AATCTACATGTATGAGTTCGCCATATCTATGAATCTTCTACTATGAATCTACATGTATGAGTTCG
CCATATCTATGAATATTCTTCTATGAACCTGCATGTATGAGTTCACTATATCTATGAATCTTCTA
CTAT
Found at i:79427713 original size:3 final size:3
Alignment explanation
Indices: 79427705--79427739 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
79427695 AAAACCAAAG
*
79427705 AAT AAT AAT AAT AAT AGT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
79427740 ACAATTCTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:79431241 original size:13 final size:13
Alignment explanation
Indices: 79431223--79431247 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79431213 AAACTATAAA
79431223 AAAAATAAAAAAT
1 AAAAATAAAAAAT
79431236 AAAAATAAAAAA
1 AAAAATAAAAAA
79431248 ATCAAGAAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:79436577 original size:34 final size:34
Alignment explanation
Indices: 79436539--79436605 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
79436529 AAAAATTATT
79436539 TAAATTACGG-TTTA-GAGTTTTTAAATAAATTAAA
1 TAAATTACGGTTTTATGA--TTTTAAATAAATTAAA
*
79436573 TAAATTAGGGTTTTATGATTTTAAATAAATTAA
1 TAAATTACGGTTTTATGATTTTAAATAAATTAA
79436606 GTTAGGGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
34 24 0.80
35 4 0.13
36 2 0.07
ACGTcount: A:0.43, C:0.01, G:0.12, T:0.43
Consensus pattern (34 bp):
TAAATTACGGTTTTATGATTTTAAATAAATTAAA
Found at i:79436619 original size:22 final size:24
Alignment explanation
Indices: 79436568--79436639 Score: 94
Period size: 22 Copynumber: 3.0 Consensus size: 24
79436558 TTTAAATAAA
* * *
79436568 TTAAATAAATTAGGGTTTTATGATT
1 TTAAATAAATTAGAG-TTTAGGGTT
79436593 TTAAATAAATTA-AG-TTAGGGTT
1 TTAAATAAATTAGAGTTTAGGGTT
79436615 TTAAATAAATTAGAGTTTAGGGTT
1 TTAAATAAATTAGAGTTTAGGGTT
79436639 T
1 T
79436640 ATAGTTTTTA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
22 18 0.43
23 2 0.05
24 10 0.24
25 12 0.29
ACGTcount: A:0.38, C:0.00, G:0.18, T:0.44
Consensus pattern (24 bp):
TTAAATAAATTAGAGTTTAGGGTT
Found at i:79436639 original size:88 final size:91
Alignment explanation
Indices: 79436547--79436717 Score: 258
Period size: 88 Copynumber: 1.9 Consensus size: 91
79436537 TTTAAATTAC
*
79436547 GGTTTAGAGTTTTTAAATAAATTAAATAAATTAGGGTTTTATGATTTTAAATAAATTA-AG-TTA
1 GGTTTAGAGTTTTTAAATAAATTAAATAAATTAGGGTTCTATGATTTTAAATAAATTAGAGTTTA
79436610 GG-GTTTTAAATAAATTAGAGTTTAG
66 GGAGTTTTAAATAAATTAGAGTTTAG
* * * * *
79436635 GGTTTATAGTTTTTAAATAAATTAAGTAAATTAGGGTTCTATGGTTTTGAATAAATTAGGGTTTA
1 GGTTTAGAGTTTTTAAATAAATTAAATAAATTAGGGTTCTATGATTTTAAATAAATTAGAGTTTA
*
79436700 GGATTTTTAAATAAATTA
66 GGAGTTTTAAATAAATTA
79436718 AGTAAATTAG
Statistics
Matches: 73, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
88 53 0.73
89 1 0.01
90 5 0.07
91 14 0.19
ACGTcount: A:0.38, C:0.01, G:0.18, T:0.44
Consensus pattern (91 bp):
GGTTTAGAGTTTTTAAATAAATTAAATAAATTAGGGTTCTATGATTTTAAATAAATTAGAGTTTA
GGAGTTTTAAATAAATTAGAGTTTAG
Found at i:79436688 original size:34 final size:33
Alignment explanation
Indices: 79436611--79436816 Score: 176
Period size: 34 Copynumber: 6.5 Consensus size: 33
79436601 ATTAAGTTAG
79436611 GGTTTTAAATAAATTAGAGT---TTAGGGTTTAT
1 GGTTTTAAATAAATTA-AGTAAATTAGGGTTTAT
*
79436642 AGTTTTTAAATAAATTAAGTAAATTAGGGTTCTAT
1 -GGTTTTAAATAAATTAAGTAAATTAGGGTT-TAT
* *
79436677 GGTTTTGAATAAATTAGGGT---TTA-GG---AT
1 GGTTTTAAATAAATTA-AGTAAATTAGGGTTTAT
79436704 --TTTTAAATAAATTAAGTAAATTAGGGTTCTAT
1 GGTTTTAAATAAATTAAGTAAATTAGGGTT-TAT
*
79436736 GGTTTTAAAT-AAGT---TAAATTAGGGTTTAT
1 GGTTTTAAATAAATTAAGTAAATTAGGGTTTAT
*
79436765 GGTTTTTAGATAAATTAAGTAAATTAGGGTTCTA-
1 GG-TTTTAAATAAATTAAGTAAATTAGGGTT-TAT
79436799 GGATTTTAAATAAATTAA
1 GG-TTTTAAATAAATTAA
79436817 TTCAGGGTGT
Statistics
Matches: 142, Mismatches: 11, Indels: 40
0.74 0.06 0.21
Matches are distributed among these distances:
24 2 0.01
25 13 0.09
27 5 0.04
28 2 0.01
29 5 0.04
30 19 0.13
31 8 0.06
32 20 0.14
33 3 0.02
34 58 0.41
35 7 0.05
ACGTcount: A:0.37, C:0.01, G:0.19, T:0.43
Consensus pattern (33 bp):
GGTTTTAAATAAATTAAGTAAATTAGGGTTTAT
Found at i:79436707 original size:25 final size:25
Alignment explanation
Indices: 79436656--79436717 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
79436646 TTTAAATAAA
*
79436656 TTAAGTAAATTAGGGTTCTATGGTT
1 TTAAATAAATTAGGGTTCTATGGTT
*
79436681 TTGAATAAATTAGGGTT-TA-GGATTT
1 TTAAATAAATTAGGGTTCTATGG--TT
79436706 TTAAATAAATTA
1 TTAAATAAATTA
79436718 AGTAAATTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
23 2 0.06
24 2 0.06
25 28 0.88
ACGTcount: A:0.35, C:0.02, G:0.19, T:0.44
Consensus pattern (25 bp):
TTAAATAAATTAGGGTTCTATGGTT
Found at i:79436709 original size:59 final size:59
Alignment explanation
Indices: 79436631--79436815 Score: 250
Period size: 59 Copynumber: 3.1 Consensus size: 59
79436621 AAATTAGAGT
* *
79436631 TTAGGGTTTA-TAGTTTTTAAATAAATTAAGTAAATTAGGGTTCTATGGTTTTGAATAAA
1 TTAGGGTTTAGGA-TTTTTAAATAAATTAAGTAAATTAGGGTTCTATGGTTTTAAATAAA
79436690 TTAGGGTTTAGGATTTTTAAATAAATTAAGTAAATTAGGGTTCTATGGTTTTAAATAAGTTAAA
1 TTAGGGTTTAGGATTTTTAAATAAATTAAGTAAATTAGGGTTCTATGGTTTT--A-AA--TAAA
*
79436754 TTAGGGTTTATGG-TTTTTAGATAAATTAAGTAAATTAGGGTTCTA-GGATTTTAAATAAA
1 TTAGGGTTTA-GGATTTTTAAATAAATTAAGTAAATTAGGGTTCTATGG-TTTTAAATAAA
79436813 TTA
1 TTA
79436816 ATTCAGGGTG
Statistics
Matches: 115, Mismatches: 3, Indels: 16
0.86 0.02 0.12
Matches are distributed among these distances:
59 56 0.49
60 1 0.01
61 2 0.02
62 3 0.03
63 2 0.02
64 49 0.43
65 2 0.02
ACGTcount: A:0.36, C:0.02, G:0.19, T:0.43
Consensus pattern (59 bp):
TTAGGGTTTAGGATTTTTAAATAAATTAAGTAAATTAGGGTTCTATGGTTTTAAATAAA
Found at i:79436749 original size:88 final size:85
Alignment explanation
Indices: 79436563--79436784 Score: 229
Period size: 88 Copynumber: 2.5 Consensus size: 85
79436553 GAGTTTTTAA
* *
79436563 ATAAATTAAATAAATTAGGGTTTTATGATTTTAAATAAATTAAGTTAGGGTTTTAAATAAATTAG
1 ATAAATTAAGTAAATTAGGG-TTTATGGTTTTAAATAAATTAAGTTAGGGTTTTAAATAAATTAG
*
79436628 AGTTTAGGGTTTATAGTTTTT
65 AGTTTAGGGTTTATAGTGTTT
* * *
79436649 AAATAAATTAAGTAAATTAGGGTTCTATGGTTTTGAATAAATTAGGGTTTAGGATTTTTAAATAA
1 --ATAAATTAAGTAAATTAGGGTT-TATGGTTTTAAATAAATTA-AG-TTAGG-GTTTTAAATAA
79436714 ATTA-AGTAAATTAGGGTTCTAT-G-GTTT
60 ATTAGAGT---TTAGGGTT-TATAGTGTTT
*
79436741 -TAAA-TAAGTTAAATTAGGGTTTATGGTTTTTAGATAAATTAAGT
1 ATAAATTAAG-TAAATTAGGGTTTATGG-TTTTAAATAAATTAAGT
79436785 AAATTAGGGT
Statistics
Matches: 115, Mismatches: 9, Indels: 21
0.79 0.06 0.14
Matches are distributed among these distances:
87 3 0.03
88 46 0.40
89 29 0.25
90 8 0.07
91 14 0.12
92 3 0.03
93 9 0.08
94 3 0.03
ACGTcount: A:0.38, C:0.01, G:0.18, T:0.43
Consensus pattern (85 bp):
ATAAATTAAGTAAATTAGGGTTTATGGTTTTAAATAAATTAAGTTAGGGTTTTAAATAAATTAGA
GTTTAGGGTTTATAGTGTTT
Found at i:79436787 original size:64 final size:64
Alignment explanation
Indices: 79436611--79436860 Score: 282
Period size: 64 Copynumber: 3.9 Consensus size: 64
79436601 ATTAAGTTAG
* *
79436611 GGTTTTAAATAAATTAGAGTTTAGGGTTTATAGTTTTTAAATAAATTAAGTAAATTAGGGTTCTA
1 GGTTTTAAATAAATTA-A-ATTAGGGTTTATGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTA
79436676 T
64 T
*
79436677 GG-TTT---TGAA-TAAATTAGGGTTTA-GGATTTTTAAATAAATTAAGTAAATTAGGGTTCTAT
1 GGTTTTAAATAAATTAAATTAGGGTTTATGG-TTTTTAAATAAATTAAGTAAATTAGGGTTCTAT
* *
79436736 GGTTTTAAATAAGTTAAATTAGGGTTTATGGTTTTTAGATAAATTAAGTAAATTAGGGTTCTA-
1 GGTTTTAAATAAATTAAATTAGGGTTTATGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTAT
* * * *** *
79436799 GGATTTTAAATAAATT-AATTCAGGGTGTAGGGTTTATGGTTAAATTTAATTAAATTAGGGTT
1 GG-TTTTAAATAAATTAAATT-AGGGTTTATGGTTTTTAAATAAA-TTAAGTAAATTAGGGTT
79436861 TAGGATTTTT
Statistics
Matches: 161, Mismatches: 13, Indels: 21
0.83 0.07 0.11
Matches are distributed among these distances:
58 1 0.01
59 45 0.28
60 4 0.02
61 2 0.01
62 3 0.02
63 8 0.05
64 75 0.47
65 21 0.13
66 2 0.01
ACGTcount: A:0.35, C:0.02, G:0.20, T:0.43
Consensus pattern (64 bp):
GGTTTTAAATAAATTAAATTAGGGTTTATGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTAT
Found at i:79437190 original size:127 final size:126
Alignment explanation
Indices: 79436924--79437424 Score: 718
Period size: 126 Copynumber: 4.0 Consensus size: 126
79436914 TTGTACCCTT
*
79436924 AAAAAATAATTTTGAGAAGACGTTTTTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAC
1 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAC
* * * * * *
79436989 TGTCTGCAAAAATACAGAAAAAAGCTCTCACGTGGACGCTCTTATTCTACAATAGTTCCTG
66 TGTCAGCAAAATTATAGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTG
* * *
79437050 AAAAAATAATTTTGAGAAGATGTTTTTGAACAAATAGTGTCCAAAACGCTTCAAGCAGGATGCAC
1 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAC
*
79437115 TGTCAGCAAAATTATAGAAAAAAGGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCTTG
66 TGTCAGCAAAATTATAGAAAAAA-GCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTG
* * *
79437177 AAAAAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCAAAAACCCTTCAAGCAGGATGCAT
1 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAC
* * * * *
79437242 TGTTAGCAAAATTATAGAAAAAAGCTCCCACGTGGACGTTCATTTTCAACGGTAGTTCCT-
66 TGTCAGCAAAATTATAGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTG
* *
79437302 AAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAAATGCTTCAAGCAGGATGCA
1 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTC-AAAAACGCTTCAAGCAGGATGCA
* * * * * *
79437367 ATGTCAGTAAAATT-TCTGAAAAAAGCTCCTACGTGGATGCTCTTTTTCTATAGTAGTT
65 CTGTCAGCAAAATTAT-AGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTT
79437425 TATGATTGGC
Statistics
Matches: 336, Mismatches: 36, Indels: 6
0.89 0.10 0.02
Matches are distributed among these distances:
125 40 0.12
126 181 0.54
127 115 0.34
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28
Consensus pattern (126 bp):
AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAC
TGTCAGCAAAATTATAGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTG
Found at i:79437390 original size:253 final size:252
Alignment explanation
Indices: 79436924--79437424 Score: 749
Period size: 253 Copynumber: 2.0 Consensus size: 252
79436914 TTGTACCCTT
* * *
79436924 AAAAAATAATTTTGAGAAGACGTTTTTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAC
1 AAAAAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCAAAAACCCTTCAAGCAGGATGCAC
* *
79436989 TGTCTGCAAAAATACAGAAAAAAGCTCTCACGTGGACGCTCTTATTCTACAATAGTTCCTGAAAA
66 TGTCTGCAAAAATACAGAAAAAAGCTCCCACGTGGACGCTCTTATTCAACAATAGTTCCTGAAAA
* * *
79437054 AATAATTTTGAGAAGATGTTTTTGAACAAATAGTGTCCAAAACGCTTCAAGCAGGATGCACTGTC
131 AATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAATGTC
79437119 AGCAAAATTATAGAAAAAAGGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCTTG
196 AGCAAAATTATAGAAAAAA-GCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCTTG
*
79437177 AAAAAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCAAAAACCCTTCAAGCAGGATGCAT
1 AAAAAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCAAAAACCCTTCAAGCAGGATGCAC
* * * **
79437242 TGT-TAGCAAAATTATAGAAAAAAGCTCCCACGTGGACGTTCATT-TTCAACGGTAGTTCCT-AA
66 TGTCT-GCAAAAATACAGAAAAAAGCTCCCACGTGGACGCTC-TTATTCAACAATAGTTCCTGAA
*
79437304 AAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAAATGCTTCAAGCAGGATGCAAT
129 AAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTC-AAAAACGCTTCAAGCAGGATGCAAT
* * * * *
79437369 GTCAGTAAAATT-TCTGAAAAAAGCTCCTACGTGGATGCTCTTTTTCTATAGTAGTT
193 GTCAGCAAAATTAT-AGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTT
79437425 TATGATTGGC
Statistics
Matches: 224, Mismatches: 20, Indels: 9
0.89 0.08 0.04
Matches are distributed among these distances:
252 73 0.33
253 149 0.67
254 2 0.01
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28
Consensus pattern (252 bp):
AAAAAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCAAAAACCCTTCAAGCAGGATGCAC
TGTCTGCAAAAATACAGAAAAAAGCTCCCACGTGGACGCTCTTATTCAACAATAGTTCCTGAAAA
AATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAATGTC
AGCAAAATTATAGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCTTG
Found at i:79440917 original size:18 final size:18
Alignment explanation
Indices: 79440880--79440917 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
79440870 AGAAAAGGAA
* *
79440880 ACATATAAGGGTTAGGAT
1 ACATATAAGGGCTAGAAT
79440898 ACATATAAGGGCTAGAAT
1 ACATATAAGGGCTAGAAT
79440916 AC
1 AC
79440918 GCACCTAGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.24
Consensus pattern (18 bp):
ACATATAAGGGCTAGAAT
Found at i:79442520 original size:19 final size:18
Alignment explanation
Indices: 79442498--79442565 Score: 57
Period size: 19 Copynumber: 3.6 Consensus size: 18
79442488 CATAAATGAA
79442498 AAAATATTAAATAATATTC
1 AAAAT-TTAAATAATATTC
***
79442517 AAAATTTAAAATAA-ACGAAA
1 AAAATTT-AAATAATA--TTC
79442537 AAAATATTAAATAATATTC
1 AAAAT-TTAAATAATATTC
79442556 AAAATTTAAA
1 AAAATTTAAA
79442566 ACAAACCGTT
Statistics
Matches: 38, Mismatches: 6, Indels: 11
0.69 0.11 0.20
Matches are distributed among these distances:
18 8 0.21
19 16 0.42
20 11 0.29
21 3 0.08
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.31
Consensus pattern (18 bp):
AAAATTTAAATAATATTC
Found at i:79442546 original size:39 final size:39
Alignment explanation
Indices: 79442496--79442571 Score: 143
Period size: 39 Copynumber: 1.9 Consensus size: 39
79442486 TACATAAATG
*
79442496 AAAAAATATTAAATAATATTCAAAATTTAAAATAAACGA
1 AAAAAATATTAAATAATATTCAAAATTTAAAACAAACGA
79442535 AAAAAATATTAAATAATATTCAAAATTTAAAACAAAC
1 AAAAAATATTAAATAATATTCAAAATTTAAAACAAAC
79442572 CGTTACTATT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.64, C:0.07, G:0.01, T:0.28
Consensus pattern (39 bp):
AAAAAATATTAAATAATATTCAAAATTTAAAACAAACGA
Found at i:79442750 original size:21 final size:21
Alignment explanation
Indices: 79442726--79442766 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
79442716 AAAGAGCTTT
*
79442726 GAGAAATTTAATGAGAAATTA
1 GAGAAATTTAAGGAGAAATTA
**
79442747 GAGAGCTTTAAGGAGAAATT
1 GAGAAATTTAAGGAGAAATT
79442767 GTAAAGATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.46, C:0.02, G:0.24, T:0.27
Consensus pattern (21 bp):
GAGAAATTTAAGGAGAAATTA
Found at i:79444413 original size:54 final size:54
Alignment explanation
Indices: 79444315--79444429 Score: 135
Period size: 54 Copynumber: 2.1 Consensus size: 54
79444305 ATTGTACTGG
** * *
79444315 AAATCTTGTAAGTATAAGGCTGTTATCTTAAATTAGCGAGCTGCAAGATTTC-AA
1 AAATCTTGTAAGTATAAGGCTGGGATCTTAAATTAGCAAACTGCAAGA-TTCGAA
* * *
79444369 AAATCTTGTAAGTATAAGGTTGGGATCTTAAA-TCGTTAAACTGCAAGATTCGAA
1 AAATCTTGTAAGTATAAGGCTGGGATCTTAAATTAG-CAAACTGCAAGATTCGAA
79444423 AAATCTT
1 AAATCTT
79444430 ACAATCTTAA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
53 5 0.10
54 47 0.90
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (54 bp):
AAATCTTGTAAGTATAAGGCTGGGATCTTAAATTAGCAAACTGCAAGATTCGAA
Found at i:79444509 original size:94 final size:92
Alignment explanation
Indices: 79444339--79444521 Score: 217
Period size: 94 Copynumber: 1.9 Consensus size: 92
79444329 TAAGGCTGTT
* * * **
79444339 ATCTTAAATTAGCGAGCTGCAAGATTTCAAAAATCTTGTAAGTATAAGGTTGGGATCTTAAATCG
1 ATCTTAAATTAGCAAGCCGCAAGATTTCAAAAATCTTGTAAGTATAAGGCTGCAATCTTAAATC-
*
79444404 TTAAACTGCAAGATTCGAAAAATCTTACA
65 -TAAACTGCAAGATTCAAAAAATCTTACA
* *
79444433 ATCTTAAATTGGCAAGCCGCAATA-TTCAAAAAATCTTGTAAGTATAAGGCTGCAATCTTAAATC
1 ATCTTAAATTAGCAAGCCGCAAGATTTC-AAAAATCTTGTAAGTATAAGGCTGCAATCTTAAATC
*
79444497 -AACGAGTCGCAAGATTCAAAAAATC
65 TAA--ACT-GCAAGATTCAAAAAATC
79444522 CTGTAAGTAT
Statistics
Matches: 76, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
91 2 0.03
93 5 0.07
94 69 0.91
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (92 bp):
ATCTTAAATTAGCAAGCCGCAAGATTTCAAAAATCTTGTAAGTATAAGGCTGCAATCTTAAATCT
AAACTGCAAGATTCAAAAAATCTTACA
Found at i:79444514 original size:54 final size:53
Alignment explanation
Indices: 79444433--79444851 Score: 358
Period size: 54 Copynumber: 7.8 Consensus size: 53
79444423 AAATCTTACA
* * * *
79444433 ATCTTAAATTGGCAAGCCGCAATATTCAAAAAATCTTGTAAGTATAAGGCTGCA
1 ATCTTAAATCGAC-AGCCGCAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCG
* * * *
79444487 ATCTTAAATCAACGAGTCGCAAGATTCAAAAAATCCTGTAAGTATAAGGCTACG
1 ATCTTAAATCGAC-AGCCGCAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCG
* * * * *
79444541 A-CTTAAATCGGCGAGCCGCAAGACTAAAAAAATCTTGTAAGTATAAGGTTGCA
1 ATCTTAAATCGAC-AGCCGCAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCG
* ** *** *
79444594 ATCTTAAATCGACAAACTACAAGATTTGGAAGATCTTGTAAGTATAAGGCTGCG
1 ATCTTAAATCGAC-AGCCGCAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCG
* * * * ** * * **
79444648 ATATTAAATTGACGAGCCGTAATATTTGAAAAATCTTGTAAATATAAGGTTATG
1 ATCTTAAATCGAC-AGCCGCAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCG
* * * *
79444702 ATCTTAAAGC-AGCAAACTGCAAGATTCAAAAAATCTTATAAGTATAAGGCTGCG
1 ATCTTAAATCGA-C-AGCCGCAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCG
* ** *
79444756 ATCTTAAATCGACAAGCCACAAGATTTGAAAAATCTTGTAAGTATAAGGCTGCA
1 ATCTTAAATCGAC-AGCCGCAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCG
* * *
79444810 ATCTTAAAAT-GACAAACTGCAATATTCAAAAAATCTTGTAAG
1 ATCTT-AAATCGAC-AGCCGCAAGATTCAAAAAATCTTGTAAG
79444852 CAGTGAATTG
Statistics
Matches: 288, Mismatches: 73, Indels: 8
0.78 0.20 0.02
Matches are distributed among these distances:
53 45 0.16
54 238 0.83
55 5 0.02
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (53 bp):
ATCTTAAATCGACAGCCGCAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCG
Found at i:79444706 original size:108 final size:108
Alignment explanation
Indices: 79444433--79444851 Score: 407
Period size: 108 Copynumber: 3.9 Consensus size: 108
79444423 AAATCTTACA
* * * * ** * * *
79444433 ATCTTAAATTGGCAAGCCGCAATATTCAAAAAATCTTGTAAGTATAAGGCTGCAATCTTAAATCA
1 ATCTTAAATCGACGAGCCGCAAGATTTGAAAAATCTTGTAAGTATAAGGTTACAATCTTAAAGCA
* * * * * *
79444498 AC-GAGTCGCAAGATTCAAAAAATCCTGTAAGTATAAGGCTACG
66 GCAAACT-ACAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCG
* * ** * *
79444541 A-CTTAAATCGGCGAGCCGCAAGACTAAAAAAATCTTGTAAGTATAAGGTTGCAATCTTAAATC-
1 ATCTTAAATCGACGAGCCGCAAGATTTGAAAAATCTTGTAAGTATAAGGTTACAATCTTAAAGCA
*** *
79444604 GACAAACTACAAGATTTGGAAGATCTTGTAAGTATAAGGCTGCG
66 G-CAAACTACAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCG
* * * * * **
79444648 ATATTAAATTGACGAGCCGTAATATTTGAAAAATCTTGTAAATATAAGGTTATGATCTTAAAGCA
1 ATCTTAAATCGACGAGCCGCAAGATTTGAAAAATCTTGTAAGTATAAGGTTACAATCTTAAAGCA
* *
79444713 GCAAACTGCAAGATTCAAAAAATCTTATAAGTATAAGGCTGCG
66 GCAAACTACAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCG
* * * *
79444756 ATCTTAAATCGACAAGCCACAAGATTTGAAAAATCTTGTAAGTATAAGGCTGCAATCTTAAA--A
1 ATCTTAAATCGACGAGCCGCAAGATTTGAAAAATCTTGTAAGTATAAGGTTACAATCTTAAAGCA
* *
79444819 TGACAAACTGCAATATTCAAAAAATCTTGTAAG
66 -G-CAAACTACAAGATTCAAAAAATCTTGTAAG
79444852 CAGTGAATTG
Statistics
Matches: 257, Mismatches: 48, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
106 1 0.00
107 88 0.34
108 167 0.65
109 1 0.00
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (108 bp):
ATCTTAAATCGACGAGCCGCAAGATTTGAAAAATCTTGTAAGTATAAGGTTACAATCTTAAAGCA
GCAAACTACAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCG
Found at i:79444769 original size:162 final size:161
Alignment explanation
Indices: 79444461--79444850 Score: 492
Period size: 162 Copynumber: 2.4 Consensus size: 161
79444451 GCAATATTCA
** * * *
79444461 AAAAATCTTGTAAGTATAAGGCTGCAATCTTAAATCAACGAGTCGCAAGATTCAAAAAATCCTGT
1 AAAAATCTTGTAAGTATAAGGCTGCAATCTTAAATTGACGAGCCGCAATATTCAAAAAATCTTGT
* * * * * * *
79444526 AAGTATAAGGCTACGACTTAAATCGGCGAGCCGCAAGACTAAAAAAATCTTGTAAGTATAAGGTT
66 AAATATAAGGCTACGACTTAAAGCAGCAAACCGCAAGACTAAAAAAATCTTATAAGTATAAGGCT
*
79444591 GCAATCTTAAATCGACAAACTACAAGATTTG
131 GCAATCTTAAATCGACAAACCACAAGATTTG
* * * * * **
79444622 GAAGATCTTGTAAGTATAAGGCTGCGATATTAAATTGACGAGCCGTAATATTTGAAAAATCTTGT
1 AAAAATCTTGTAAGTATAAGGCTGCAATCTTAAATTGACGAGCCGCAATATTCAAAAAATCTTGT
* * * * *
79444687 AAATATAAGGTTATGATCTTAAAGCAGCAAACTGCAAGATTCAAAAAATCTTATAAGTATAAGGC
66 AAATATAAGGCTACGA-CTTAAAGCAGCAAACCGCAAGACTAAAAAAATCTTATAAGTATAAGGC
* *
79444752 TGCGATCTTAAATCGACAAGCCACAAGATTTG
130 TGCAATCTTAAATCGACAAACCACAAGATTTG
* * * *
79444784 AAAAATCTTGTAAGTATAAGGCTGCAATCTTAAAATGACAAACTGCAATATTCAAAAAATCTTGT
1 AAAAATCTTGTAAGTATAAGGCTGCAATCTTAAATTGACGAGCCGCAATATTCAAAAAATCTTGT
79444849 AA
66 AA
79444851 GCAGTGAATT
Statistics
Matches: 190, Mismatches: 38, Indels: 1
0.83 0.17 0.00
Matches are distributed among these distances:
161 66 0.35
162 124 0.65
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (161 bp):
AAAAATCTTGTAAGTATAAGGCTGCAATCTTAAATTGACGAGCCGCAATATTCAAAAAATCTTGT
AAATATAAGGCTACGACTTAAAGCAGCAAACCGCAAGACTAAAAAAATCTTATAAGTATAAGGCT
GCAATCTTAAATCGACAAACCACAAGATTTG
Found at i:79450197 original size:20 final size:21
Alignment explanation
Indices: 79450172--79450211 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
79450162 TTTTAATAAT
*
79450172 TTAATAT-ATAAATATTTTAA
1 TTAATATAAAAAATATTTTAA
79450192 TTAATATAAAAAATATTTTA
1 TTAATATAAAAAATATTTTA
79450212 TATATTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
TTAATATAAAAAATATTTTAA
Found at i:79450940 original size:21 final size:21
Alignment explanation
Indices: 79450914--79450962 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
79450904 AATTCTAGAC
79450914 CCCTAAACTTAAAACATTAAA
1 CCCTAAACTTAAAACATTAAA
* * *
79450935 CCCTAAACTTTAAATATTGAA
1 CCCTAAACTTAAAACATTAAA
*
79450956 TCCTAAA
1 CCCTAAA
79450963 TTTTATCCAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.47, C:0.22, G:0.02, T:0.29
Consensus pattern (21 bp):
CCCTAAACTTAAAACATTAAA
Found at i:79452272 original size:90 final size:90
Alignment explanation
Indices: 79452137--79452412 Score: 313
Period size: 90 Copynumber: 3.1 Consensus size: 90
79452127 ACCTCAAAAA
* * * * * * *
79452137 TTGTAGGTTAATACGCTACTAGATGGATGTGAATGCACAACATATTTGCATATGAGAGCTGCTAG
1 TTGTAGGTTAATACGCTGCCAGATGGTTGTGAATGCACAACATATTTACAGATAAGAGCTGCCAG
** *
79452202 AATGTGGGTGGATAAACCA-TCGGTG
66 AAAATGGGTGGATAAACCACT-AGTG
* * *
79452227 TTGTAGGTTAATACGCTGCCAGATGGTTATGAATGTACAACATATTTACAGATAAGAGTTGCCAG
1 TTGTAGGTTAATACGCTGCCAGATGGTTGTGAATGCACAACATATTTACAGATAAGAGCTGCCAG
*
79452292 AAAATGGGTGGATGAACCACTAGTG
66 AAAATGGGTGGATAAACCACTAGTG
* * **
79452317 TTGTAGGTTAAAACGCTGCCAGATGTTTGTGAATGCACAATGTATTT-CTAGATAAGAGCTGCCA
1 TTGTAGGTTAATACGCTGCCAGATGGTTGTGAATGCACAACATATTTAC-AGATAAGAGCTGCCA
** * * *
79452381 GAAAATCTGTGGATGAACCACCAGAG
65 GAAAATGGGTGGATAAACCACTAGTG
79452407 TTGTAG
1 TTGTAG
79452413 ATTATTAAAC
Statistics
Matches: 159, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
89 1 0.01
90 157 0.99
91 1 0.01
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (90 bp):
TTGTAGGTTAATACGCTGCCAGATGGTTGTGAATGCACAACATATTTACAGATAAGAGCTGCCAG
AAAATGGGTGGATAAACCACTAGTG
Found at i:79452525 original size:19 final size:19
Alignment explanation
Indices: 79452466--79452525 Score: 51
Period size: 19 Copynumber: 3.4 Consensus size: 19
79452456 CCATGCAATG
79452466 CAATATGCTTATAACAGAT
1 CAATATGCTTATAACAGAT
*
79452485 CAATA--CAGTAGT-A-A-AT
1 CAATATGC-TTA-TAACAGAT
79452501 -AATATGCTTATAACAGAT
1 CAATATGCTTATAACAGAT
79452519 CAATATG
1 CAATATG
79452526 GCAACAATAG
Statistics
Matches: 31, Mismatches: 2, Indels: 16
0.63 0.04 0.33
Matches are distributed among these distances:
15 5 0.16
16 5 0.16
17 4 0.13
18 5 0.16
19 12 0.39
ACGTcount: A:0.45, C:0.13, G:0.12, T:0.30
Consensus pattern (19 bp):
CAATATGCTTATAACAGAT
Found at i:79452541 original size:34 final size:33
Alignment explanation
Indices: 79452467--79452558 Score: 89
Period size: 34 Copynumber: 2.7 Consensus size: 33
79452457 CATGCAATGC
* *
79452467 AATATGCTTATAACAGATCAATACAGTAGTAAAT
1 AATATGCTTATAACAGATCAATATAGCAG-AAAT
*
79452501 AATATGCTTATAACAGATCAATATGGCA-ACAAT
1 AATATGCTTATAACAGATCAATATAGCAGA-AAT
* *
79452534 AGGTATGCTTTTAACTA-ATCAATAT
1 A-ATATGCTTATAAC-AGATCAATAT
79452559 TGTAGCACAA
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
32 1 0.02
33 4 0.08
34 44 0.88
35 1 0.02
ACGTcount: A:0.43, C:0.13, G:0.12, T:0.32
Consensus pattern (33 bp):
AATATGCTTATAACAGATCAATATAGCAGAAAT
Found at i:79458759 original size:18 final size:19
Alignment explanation
Indices: 79458733--79458769 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
79458723 CATGTGATTA
79458733 AAAAAATTGG-AAAAAAAT
1 AAAAAATTGGTAAAAAAAT
*
79458751 AAAATATTGGTAAAAAAAT
1 AAAAAATTGGTAAAAAAAT
79458770 TAATGCGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.22
Consensus pattern (19 bp):
AAAAAATTGGTAAAAAAAT
Found at i:79459540 original size:14 final size:15
Alignment explanation
Indices: 79459512--79459546 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
79459502 TATTATTGGA
*
79459512 GTTTATAAAATAATT
1 GTTTATAAAAAAATT
79459527 GTTT-TAAAAAAATT
1 GTTTATAAAAAAATT
79459541 GTTTAT
1 GTTTAT
79459547 TTTAAAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.49
Consensus pattern (15 bp):
GTTTATAAAAAAATT
Found at i:79461394 original size:522 final size:522
Alignment explanation
Indices: 79460400--79461445 Score: 1560
Period size: 522 Copynumber: 2.0 Consensus size: 522
79460390 ATGGTTTCAG
* *
79460400 ATTAAACAAACTAGCATTGGGTTTATGGACAAGCCACATATTTACAGTTACTGCCACTTATTGTG
1 ATTAAACAAACTACCACTGGGTTTATGGACAAGCCACATATTTACAGTTACTGCCACTTATTGTG
* * * * * *
79460465 AGTGCACAACATATTCGCATATTAAACAAATTGCCACTGGGTTTTGTGGACGAGCCACCACTTGT
66 AGTGCACAACATATTCACAAATTAAACAAACTGCCACTAGATTTTATGGACGAGCCACCACTTGT
* * * *
79460530 TTGCAGATTTAATAAACTGTCACTCTTCCTCTGTACAATGTCTCATCCCATTCAATGCACTATGT
131 TTGAAGATTTAATAAACTATCACTCTTCCTCTGTACAATGTCTCATCCCATGCAATGCACTATAT
*
79460595 TATGCTATGTAACAAATAAACACTAGTAGTAGATATGTAACATGTACTCAATTTATCACTAACAC
196 CATGCTATGTAACAAATAAACACTAGTAGTAGATATGTAACATGTACTCAATTTATCACTAACAC
* *
79460660 ATAACATGTTTTTCATGTTCTTCATAGGGCAGTAACAATATTATCACTTTCAATTTAACAGTTTC
261 ATAACATGTTTTTCATGTTCTTCACAGGGCAGTAACAATATTATCACTTTAAATTTAACAGTTTC
*
79460725 ACTTTATCAGAAAACACATAACGTTCACGTATCATGCAAAGTAATAAGGGCACTTAAGGCATTAA
326 ACTTTATCAGAAAACACATAACGTTCACATATCATGCAAAGTAATAAGGGCACTTAAGGCATTAA
* * * * *
79460790 ACACAAATTTCAAAATTCACCCAATATCAGGGACCTAATTGAGCAAGAATAAACTGTAAAAACAA
391 ACACAAATCTCAAAATGCACCCAATATCAGGGACCTAACTGAGAAAGAATAAACTCTAAAAACAA
* *
79460855 TTTAGGGAATGTACAGGGATTAAACTGAACATTTCATACTTCTACATAATATTAATAATTTCAAT
456 TTTAGAGAATGTACAGGGATTAAACTGAACACTTCATACTTCTACATAATATTAATAATTTCAAT
79460920 CA
521 CA
* * **
79460922 ATTAAACAAACTACCACTGGGTTTGTGGACGAGCCACATATTTGTAGTTACTGCCACTTATTGTG
1 ATTAAACAAACTACCACTGGGTTTATGGACAAGCCACATATTTACAGTTACTGCCACTTATTGTG
*
79460987 AGTGCACAACATATTCACAAATTAAACAAACTGCCACTAGATTTTATGGATGAGCCACCACTTGT
66 AGTGCACAACATATTCACAAATTAAACAAACTGCCACTAGATTTTATGGACGAGCCACCACTTGT
* * *
79461052 TTTAAGATTTAATAAACTATCACTCTTCCTTTGTACAATGTC-CCTCCCCATGCAATGCACTATA
131 TTGAAGATTTAATAAACTATCACTCTTCCTCTGTACAATGTCTCAT-CCCATGCAATGCACTATA
* * * *
79461116 TCATGCTATGTAAGAAATCATCACTAGTAGTAGATATGTTACATGTACTCAATTTATCACTAACA
195 TCATGCTATGTAACAAATAAACACTAGTAGTAGATATGTAACATGTACTCAATTTATCACTAACA
* * *
79461181 CTTAACATGTTTTTCATGTTCTTCGCA-CG-ATGATAACAATATTATCACTTTAAATTTAACAGT
260 CATAACATGTTTTTCATGTTCTTCACAGGGCA-G-TAACAATATTATCACTTTAAATTTAACAGT
** * * *
79461244 TTCACTTTATCAGAAAACACATAATTTTCACATATCATGCGATGTAATGAGGGCACTTAAGGCAT
323 TTCACTTTATCAGAAAACACATAACGTTCACATATCATGCAAAGTAATAAGGGCACTTAAGGCAT
* * * *
79461309 TAAACCCAAATCTCATAATGCACCTAATATCCGGGACCTAACTGAGTAAAG-ATAAACTCTAAAA
388 TAAACACAAATCTCAAAATGCACCCAATATCAGGGACCTAACTGAG-AAAGAATAAACTCTAAAA
* * * *
79461373 ATAATTTAGAGAATTTACAGGGATTAAATTGAACACTTCATACTTTTACATAATATTAATAATTT
452 ACAATTTAGAGAATGTACAGGGATTAAACTGAACACTTCATACTTCTACATAATATTAATAATTT
*
79461438 CAGTCA
517 CAATCA
79461444 AT
1 AT
79461446 CAATCAATCA
Statistics
Matches: 468, Mismatches: 52, Indels: 8
0.89 0.10 0.02
Matches are distributed among these distances:
520 1 0.00
521 4 0.01
522 460 0.98
523 3 0.01
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32
Consensus pattern (522 bp):
ATTAAACAAACTACCACTGGGTTTATGGACAAGCCACATATTTACAGTTACTGCCACTTATTGTG
AGTGCACAACATATTCACAAATTAAACAAACTGCCACTAGATTTTATGGACGAGCCACCACTTGT
TTGAAGATTTAATAAACTATCACTCTTCCTCTGTACAATGTCTCATCCCATGCAATGCACTATAT
CATGCTATGTAACAAATAAACACTAGTAGTAGATATGTAACATGTACTCAATTTATCACTAACAC
ATAACATGTTTTTCATGTTCTTCACAGGGCAGTAACAATATTATCACTTTAAATTTAACAGTTTC
ACTTTATCAGAAAACACATAACGTTCACATATCATGCAAAGTAATAAGGGCACTTAAGGCATTAA
ACACAAATCTCAAAATGCACCCAATATCAGGGACCTAACTGAGAAAGAATAAACTCTAAAAACAA
TTTAGAGAATGTACAGGGATTAAACTGAACACTTCATACTTCTACATAATATTAATAATTTCAAT
CA
Found at i:79464155 original size:17 final size:17
Alignment explanation
Indices: 79464135--79464168 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
79464125 ACTCTAACTA
79464135 ATCAACAATGGTAACAT
1 ATCAACAATGGTAACAT
79464152 ATCAACAATGGTAACAT
1 ATCAACAATGGTAACAT
79464169 CTTAAACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.18, G:0.12, T:0.24
Consensus pattern (17 bp):
ATCAACAATGGTAACAT
Found at i:79469425 original size:79 final size:80
Alignment explanation
Indices: 79469262--79469486 Score: 246
Period size: 79 Copynumber: 2.8 Consensus size: 80
79469252 TTGAATGATG
* * * * * * *
79469262 TCCGGGCTAAGTCTCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCAT
79469325 TTGTGCGAGATACTAAA
64 TTGTGCGAGATACTAAA
*
79469342 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCA
* *
79469403 TTTGTGTGAGTTACTAAA
63 TTTGTGCGAGATACTAAA
** *
79469421 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
79469486 G
66 G
79469487 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 12, Indels: 18
0.81 0.08 0.12
Matches are distributed among these distances:
78 2 0.02
79 67 0.54
80 45 0.36
81 9 0.07
82 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:79469457 original size:40 final size:40
Alignment explanation
Indices: 79469262--79469486 Score: 239
Period size: 40 Copynumber: 5.7 Consensus size: 40
79469252 TTGAATGATG
* * * * *
79469262 TCCGGGCTAAGTCTCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACTAAA
*
79469302 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGA-TACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGA-ATTACTAAA
* *
79469342 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGA-TACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGA-ATTACTAAA
* *
79469382 TCCGGGCTAAG-CCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAAA
*
79469421 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTA-AA
*
79469462 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
79469487 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 16, Indels: 14
0.84 0.08 0.07
Matches are distributed among these distances:
39 33 0.20
40 117 0.72
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:79469478 original size:119 final size:120
Alignment explanation
Indices: 79469262--79469486 Score: 282
Period size: 119 Copynumber: 1.9 Consensus size: 120
79469252 TTGAATGATG
* *
79469262 TCCGGGCTAAGTCTCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
79469327 GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
66 GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
* * * **
79469382 TCCGGGCTAAG-CCCGAAGGCATTTGTG-TGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* *
79469444 TTGTGCGA-ATTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
64 TTGTGCGAGA-TACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
79469487 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
118 3 0.03
119 69 0.76
120 19 0.21
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:79469509 original size:79 final size:79
Alignment explanation
Indices: 79469315--79469519 Score: 181
Period size: 79 Copynumber: 2.6 Consensus size: 79
79469305 GGACTAAGAT
** *
79469315 CCGAAGGCATTTGTGCGAGAT-ACTAAATCCG-GACTAAGAT-CCGAAGGCATTTGTGCGAGATA
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGAG-TTAA-ATCCCGAAGGCATTTGTGCGAGATA
*
79469377 CTAATTCCGGGCTAAGC
63 CTAATACCGGGCTAAGC
*** * * *
79469394 CCGAAGGCATTTGTGTGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGAGTTAAATCCCGAAGGCATTTGTGCGAGA-TACT
*
79469458 -ATAACCGGGCTATGTC
65 AAT-ACCGGGCTAAG-C
* *
79469474 CCGAAGGCATTTGAACGAG-GAGCTATATCC-AGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGAGTTAAATCCCGAAGG
79469520 TACGTGATTT
Statistics
Matches: 106, Mismatches: 13, Indels: 14
0.80 0.10 0.11
Matches are distributed among these distances:
78 5 0.05
79 76 0.72
80 25 0.24
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGAGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:79474778 original size:24 final size:24
Alignment explanation
Indices: 79474749--79474795 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
79474739 ATGTAGTCTC
79474749 ACTATCTCAGAAATGTAGAGCTTA
1 ACTATCTCAGAAATGTAGAGCTTA
79474773 ACTATCTCAGAAATGTAGAGCTT
1 ACTATCTCAGAAATGTAGAGCTT
79474796 CACCAACTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (24 bp):
ACTATCTCAGAAATGTAGAGCTTA
Found at i:79481007 original size:6 final size:6
Alignment explanation
Indices: 79480998--79481024 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
79480988 TCCCAATCCT
79480998 AAATGC AAATGC AAATGC AAATGC AAA
1 AAATGC AAATGC AAATGC AAATGC AAA
79481025 CCATATAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.56, C:0.15, G:0.15, T:0.15
Consensus pattern (6 bp):
AAATGC
Found at i:79485282 original size:21 final size:21
Alignment explanation
Indices: 79485258--79485298 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
79485248 ATAACATGCC
*
79485258 CGTGTGA-TAGAGGCACACGAT
1 CGTGTGACTAGAAG-ACACGAT
79485279 CGTGTGACTAGAAGACACGA
1 CGTGTGACTAGAAGACACGA
79485299 CCATGCGCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.32, C:0.20, G:0.32, T:0.17
Consensus pattern (21 bp):
CGTGTGACTAGAAGACACGAT
Found at i:79488198 original size:53 final size:53
Alignment explanation
Indices: 79488148--79488253 Score: 167
Period size: 53 Copynumber: 2.0 Consensus size: 53
79488138 TCGATAAATT
* *
79488148 GTATGCTTCCACAAAACGTTTTTCTTTAAAAATGACGGTTTACGCAATAAAGG
1 GTATGCTTCCAAAAAACATTTTTCTTTAAAAATGACGGTTTACGCAATAAAGG
* * *
79488201 GTATGCTTCCAAAAAATATTTTTCTTTAAAAATGACGGTTTACACAACAAAGG
1 GTATGCTTCCAAAAAACATTTTTCTTTAAAAATGACGGTTTACGCAATAAAGG
79488254 TTTTTCTAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (53 bp):
GTATGCTTCCAAAAAACATTTTTCTTTAAAAATGACGGTTTACGCAATAAAGG
Found at i:79492920 original size:24 final size:24
Alignment explanation
Indices: 79492893--79492952 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
79492883 GGGTTACAAA
*
79492893 AAGATGAAATGT-AAAGAGTTAATG
1 AAGATGAAAGGTGAAAG-GTTAATG
79492917 AAGATGAAAGGTGAAAGGTTAATG
1 AAGATGAAAGGTGAAAGGTTAATG
79492941 AAGATGAAAGGT
1 AAGATGAAAGGT
79492953 TGAACATCCA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
24 30 0.88
25 4 0.12
ACGTcount: A:0.48, C:0.00, G:0.30, T:0.22
Consensus pattern (24 bp):
AAGATGAAAGGTGAAAGGTTAATG
Found at i:79493935 original size:37 final size:37
Alignment explanation
Indices: 79493876--79494014 Score: 242
Period size: 37 Copynumber: 3.8 Consensus size: 37
79493866 AGCTCAGACG
* *
79493876 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
79493913 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
79493950 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
79493987 TAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
79494015 TAGAGCTCGG
Statistics
Matches: 99, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:79494252 original size:38 final size:42
Alignment explanation
Indices: 79494200--79494964 Score: 504
Period size: 49 Copynumber: 16.0 Consensus size: 42
79494190 ATATACACTT
79494200 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA-A
79494244 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA-A
* *
79494291 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCGCATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA-A
*
79494338 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCGCATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA-A
79494385 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCAC--ATATATA-A
*
79494434 CTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCAC--ATATATA-A
* *
79494483 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCAC--ATATATA-A
* * *
79494532 CTTTCACATTCACCACATTGGCCATTCGGCCTTATCACATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA-A
* *
79494579 CTTTCACATTCATCATATCAGCCATTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCAC--ATATATA-A
* * * *
79494628 CTTTCACATTCGTCACATTGGCCATTCGGCCTTATCACATATACACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA-A
* *
79494675 CTTTCACATTCATCACATCGGCCACTCGGCCTTATCACATATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCAC----ATATATA-A
79494726 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCAC--ATATATA-A
79494775 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCAC--ATATATA-A
* *
79494824 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA-A
79494871 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCAC--ATATATA-A
*
79494920 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA
79494965 CACTTTCACA
Statistics
Matches: 679, Mismatches: 29, Indels: 20
0.93 0.04 0.03
Matches are distributed among these distances:
47 309 0.46
49 326 0.48
51 44 0.06
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (42 bp):
TCACATTATCACATCGGCCATTAGGCCTTATCACATATATAA
Found at i:79494448 original size:49 final size:47
Alignment explanation
Indices: 79494133--79494976 Score: 1274
Period size: 47 Copynumber: 17.6 Consensus size: 47
79494123 CCCTTCGGGA
* * * * * *
79494133 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79494180 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79494227 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79494274 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79494321 CTTATCGCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79494368 CTTATCGCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79494415 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79494464 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
79494513 CTTATCACATATATATACACTTTCACATTCACCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79494562 CTTATCACATATATACACTTTCACATTCATCATATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
79494609 CTTATCACATATATATACACTTTCACATTCGTCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
79494658 CTTATCACATATACACACTTTCACATTCATCACATCGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79494705 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79494756 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79494805 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79494854 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79494901 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79494950 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
79494977 TATTCAAATA
Statistics
Matches: 748, Mismatches: 39, Indels: 20
0.93 0.05 0.02
Matches are distributed among these distances:
47 378 0.51
49 326 0.44
51 44 0.06
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:79494457 original size:96 final size:96
Alignment explanation
Indices: 79494133--79494976 Score: 1358
Period size: 96 Copynumber: 8.8 Consensus size: 96
79494123 CCCTTCGGGA
* * * * * *
79494133 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
79494196 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
79494227 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
*
79494290 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
79494321 CTTATCGC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCGCATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
79494384 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
79494415 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATAT
* *
79494480 ACACTTTCACATTCATCACATTGGCCATTCGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79494513 CTTATCACATATATATACACTTTCACATTCACCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
* *
79494578 ACTTTCACATTCATCATATCAGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
79494609 CTTATCACATATATATACACTTTCACATTCGTCACATTGGCCATTCGGCCTTATCACATATACAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
* *
79494674 ACTTTCACATTCATCACATCGGCCACTCGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
79494705 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATAT
79494770 ATACACTTTCACATTCATCACATCGGCCATTAGGC
62 ATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79494805 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
79494870 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
79494901 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
79494966 ACTTTCACATT
66 ACTTTCACATT
79494977 TATTCAAATA
Statistics
Matches: 700, Mismatches: 40, Indels: 18
0.92 0.05 0.02
Matches are distributed among these distances:
93 1 0.00
94 181 0.26
96 289 0.41
98 185 0.26
100 44 0.06
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:79498968 original size:78 final size:79
Alignment explanation
Indices: 79498868--79499087 Score: 270
Period size: 78 Copynumber: 2.8 Consensus size: 79
79498858 CTCCTCGTTT
* *
79498868 AAATGCCTTCGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AAATGCCTTCGGACTTAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGGAA
79498933 TTAGTAACTCGCAC
66 TTAGTAACTCGCAC
* * *
79498947 AAATGCC-TCGGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTCGGG-CTT-AGCCGGA
1 AAATGCCTTCGGACTTAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGGA
*
79499008 ATTAGTATCTCGCAC
65 ATTAGTAACTCGCAC
* * * * * *
79499023 AAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGG
1 AAATGCCTTCGGA-CTTAGCCCGGTTATAGT-AATTCGCACAAATGCCTTCGGGACTTAACCCGG
79499087 A
64 A
79499088 CATCATTCAA
Statistics
Matches: 119, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
76 26 0.22
77 9 0.08
78 58 0.49
79 21 0.18
80 5 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
AAATGCCTTCGGACTTAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGGAA
TTAGTAACTCGCAC
Found at i:79498969 original size:38 final size:39
Alignment explanation
Indices: 79498868--79499087 Score: 241
Period size: 38 Copynumber: 5.6 Consensus size: 39
79498858 CTCCTCGTTT
* * *
79498868 AAATGCCTTCGGACATAGCCCGG-TTATAGTAATTCGCAC
1 AAATGCCTTCGGACTTAACCCGGATT-TAGTAACTCGCAC
79498907 AAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
1 AAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCAC
79498947 AAATGCC-TCGGACTTAACCCGGATTTAGTAACTCGCAC
1 AAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCAC
* * * *
79498985 AAATGCCTTCGGGCTT-AGCCGGAATTAGTATCTCGCAC
1 AAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCAC
** * * * *
79499023 AAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCAC
1 AAATGCCTTCGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
*
79499064 AAA-GCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTC-GGACTTAACCCGGA
79499088 CATCATTCAA
Statistics
Matches: 157, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
38 67 0.43
39 22 0.14
40 55 0.35
41 13 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
AAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:79506854 original size:40 final size:39
Alignment explanation
Indices: 79506750--79506918 Score: 234
Period size: 39 Copynumber: 4.3 Consensus size: 39
79506740 CTCCTCGTTT
* * * *
79506750 AAATGCCTTC-GGACATAGCCCGGTTATAGTAATTCGCAC
1 AAATGCCTTCGGGACTTAACCCGGAT-TAGTAACTCGCAC
79506789 AAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAACCCGGA-TTAGTAACTCGCAC
*
79506828 AAATGCCATCGGGACTTAACCCGGATTAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAACCCGGATTAGTAACTCGCAC
* *
79506867 AAATGCCATCGGGACTTAACCCGGGATTAGTATCTCGCAC
1 AAATGCCTTCGGGACTTAACCC-GGATTAGTAACTCGCAC
79506907 AAATGCCTTCGG
1 AAATGCCTTCGG
79506919 ATCTTAGTCC
Statistics
Matches: 120, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
39 78 0.65
40 42 0.35
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
AAATGCCTTCGGGACTTAACCCGGATTAGTAACTCGCAC
Found at i:79506931 original size:79 final size:78
Alignment explanation
Indices: 79506750--79506934 Score: 248
Period size: 79 Copynumber: 2.3 Consensus size: 78
79506740 CTCCTCGTTT
* * * *
79506750 AAATGCCTTCGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGACTTAACCCGGATT
1 AAATGCCTTCGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCATCGGACTTAACCCGGATT
79506815 TAGTAACTCGCAC
66 TAGTAACTCGCAC
* *
79506828 AAATGCCATCGGGACTTAACCCGGAT-TAGTAACTCGCACAAATGCCATCGGGACTTAACCCGGG
1 AAATGCCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATGCCATC-GGACTTAACCC-GG
*
79506892 A-TTAGTATCTCGCAC
63 ATTTAGTAACTCGCAC
*
79506907 AAATGCCTTCGGATCTTAGTCCGGATAT
1 AAATGCCTTCGGA-CTTAGCCCGGATAT
79506935 GGTCACTTAT
Statistics
Matches: 92, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
78 33 0.36
79 55 0.60
80 4 0.04
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (78 bp):
AAATGCCTTCGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCATCGGACTTAACCCGGATT
TAGTAACTCGCAC
Found at i:79509520 original size:39 final size:39
Alignment explanation
Indices: 79509333--79509825 Score: 700
Period size: 39 Copynumber: 12.6 Consensus size: 39
79509323 TTACTCTTCG
* * * * *
79509333 GGACATAGCCCGGATATAACACCAGCACGAATGCTCTTTG
1 GGACTTAGCCCGGATATATCACTAGCACGAATGCTC-CTC
** * *
79509373 GGGTTTAGCAACGGATATATTCACTAGCACGAATGCTCTTC
1 GGACTTAGC-CCGGATATA-TCACTAGCACGAATGCTCCTC
79509414 GGAACTTAGCCCGGATATATCACTAGCACGAATGCTCGCTC
1 GG-ACTTAGCCCGGATATATCACTAGCACGAATGCTC-CTC
79509455 GGGACTTAGCCCGGATATATCA-TAGCACGAATGCTCCTC
1 -GGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTC
79509494 GGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTC
1 GGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTC
79509533 GGACTTAGCCCGGATATATCA-TAGCACGAATGCTCCTC
1 GGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTC
79509571 GGGACTTAGCCCGGATATATCACTAGCACGAATGCT-CTC
1 -GGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTC
79509610 GGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTC
1 -GGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTC
*
79509650 GGACTTAGCCCGGATAT-TCACTAGCAC-TAT-CTCCTC
1 GGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTC
*
79509686 GGGGCTTAGCCC-GATATATCACTAGCACGAATGCT-CTC
1 -GGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTC
79509724 GAGACTTATGCCCGGAT-TATCACTAGCACGAATGCT-CTC
1 G-GACTTA-GCCCGGATATATCACTAGCACGAATGCTCCTC
*
79509763 GGACTTAGCCCGGATATATCACTAGCACAAATGCTCCTC
1 GGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTC
79509802 GGGACTTAGCCCGGATATATCACT
1 -GGACTTAGCCCGGATATATCACT
79509826 CTCAATTCTC
Statistics
Matches: 418, Mismatches: 16, Indels: 38
0.89 0.03 0.08
Matches are distributed among these distances:
36 11 0.03
37 31 0.07
38 82 0.20
39 150 0.36
40 80 0.19
41 41 0.10
42 23 0.06
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (39 bp):
GGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTC
Found at i:79511754 original size:38 final size:39
Alignment explanation
Indices: 79511712--79511872 Score: 185
Period size: 39 Copynumber: 4.3 Consensus size: 39
79511702 CTCCTCGTTC
* *
79511712 AATGCCTTCGGGACAT-AGCCGGTTATAGTAA-TCGCACA
1 AATGCCTTCGGGACTTAACCCGGTT-TAGTAACTCGCACA
79511750 AATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-TTTAGTAACTCGCACA
* *
79511789 AATGCCATCGGGACTTAACCCGGATTAGTAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGTTTAGTAACTCGCACA
* * *
79511828 AATGCCATC-GGAC-T-ACCC-G-ATAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGTTTAGTAACTCGCACA
79511862 AATGCCTTCGG
1 AATGCCTTCGG
79511873 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 7, Indels: 13
0.85 0.05 0.10
Matches are distributed among these distances:
34 21 0.19
35 2 0.02
36 4 0.04
37 6 0.05
38 24 0.22
39 41 0.37
40 13 0.12
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGTTTAGTAACTCGCACA
Found at i:79511817 original size:39 final size:38
Alignment explanation
Indices: 79511737--79511878 Score: 195
Period size: 39 Copynumber: 3.8 Consensus size: 38
79511727 TAGCCGGTTA
*
79511737 TAGTAA-TCGCACAAATGCCTTCGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCATCGGACTTAACCCGGA-T
79511775 TAGTAACTCGCACAAATGCCATCGGGACTTAACCCGGAT
1 TAGTAACTCGCACAAATGCCATC-GGACTTAACCCGGAT
79511814 TAGTAACTCGCACAAATGCCATCGGAC-T-ACCC-GA-
1 TAGTAACTCGCACAAATGCCATCGGACTTAACCCGGAT
* *
79511848 TAGTATCTCGCACAAATGCCTTCGGATCTTA
1 TAGTAACTCGCACAAATGCCATCGGA-CTTA
79511879 GTCCGGATAT
Statistics
Matches: 96, Mismatches: 3, Indels: 11
0.87 0.03 0.10
Matches are distributed among these distances:
34 24 0.25
35 3 0.03
36 5 0.05
37 1 0.01
38 10 0.10
39 39 0.41
40 14 0.15
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (38 bp):
TAGTAACTCGCACAAATGCCATCGGACTTAACCCGGAT
Found at i:79511885 original size:73 final size:76
Alignment explanation
Indices: 79511712--79511888 Score: 213
Period size: 73 Copynumber: 2.3 Consensus size: 76
79511702 CTCCTCGTTC
* * *
79511712 AATGCCTTCGGGACATAGCCGGTTATAGTAATCGCACAAATGCCTTCGGACTTAACCCGGATTTA
1 AATGCCTTCGGGACTTAGCCGGATATAGTAATCGCACAAATGCCATCGGACTTAACCCGGA-TTA
79511777 GTAACTCGCACA
65 GTAACTCGCACA
* *
79511789 AATGCCATCGGGACTTAACCCGGAT-TAGTAACTCGCACAAATGCCATCGGAC-T-ACCC-GA-T
1 AATGCCTTCGGGACTT-AGCCGGATATAGTAA-TCGCACAAATGCCATCGGACTTAACCCGGATT
*
79511849 AGTATCTCGCACA
64 AGTAACTCGCACA
79511862 AATGCCTTC-GGATCTTAGTCCGGATAT
1 AATGCCTTCGGGA-CTTAG-CCGGATAT
79511889 GGTCACTTAT
Statistics
Matches: 87, Mismatches: 8, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
72 4 0.05
73 30 0.34
74 1 0.01
75 2 0.02
76 4 0.05
77 21 0.24
78 25 0.29
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (76 bp):
AATGCCTTCGGGACTTAGCCGGATATAGTAATCGCACAAATGCCATCGGACTTAACCCGGATTAG
TAACTCGCACA
Found at i:79514393 original size:40 final size:40
Alignment explanation
Indices: 79514299--79514791 Score: 796
Period size: 40 Copynumber: 12.7 Consensus size: 40
79514289 TGATTACTCT
* *
79514299 TCGGGAC-TAGCCCGGATATAACACCAGCACGAATG---C
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
** * *
79514335 T-GGGGTTTAGCACGGATATATCACTAGCACGAATGCTCT
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
79514374 TCGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
79514414 TCGGGACTTAGCCCGGATATATCAC-A-CACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
79514452 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
79514492 TC-GGACTTAGCCCGG--ATATCA-TAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
79514528 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
79514568 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCT-C
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
79514607 TCGGGACTTAGCCCGGATATATCACTAGCACTAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
79514647 TCGGGGCTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
79514687 TCGAGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
79514727 TCGGGACTTAGCCCGGATATATCACTAGCACAAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
79514767 TCGGGAC-TAGCCCGGATATATCACT
1 TCGGGACTTAGCCCGGATATATCACT
79514792 CAATTCTCAT
Statistics
Matches: 426, Mismatches: 19, Indels: 21
0.91 0.04 0.05
Matches are distributed among these distances:
35 3 0.01
36 43 0.10
37 19 0.04
38 37 0.09
39 78 0.18
40 246 0.58
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
Found at i:79514702 original size:119 final size:120
Alignment explanation
Indices: 79514299--79514791 Score: 796
Period size: 119 Copynumber: 4.2 Consensus size: 120
79514289 TGATTACTCT
* * ** *
79514299 TCGGGAC-TAGCCCGGATATAACACCAGCACGAATG---CT-GGGGTTTAGCACGGATATATCAC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCAC
* *
79514359 TAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCC
66 TAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
79514414 TCGGGACTTAGCCCGGATATATCAC-A-CACGAATGCTCCTCGGGACTTAGCCCGGATATATCAC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCAC
79514477 TAGCACGAATGCTCCTC-GGACTTAGCCCGG--ATATCA-TAGCACGAATGCTCC
66 TAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
79514528 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCAC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCAC
*
79514593 TAGCACGAATGCT-CTCGGGACTTAGCCCGGATATATCACTAGCACTAATGCTCC
66 TAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* *
79514647 TCGGGGCTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGAGACTTAGCCCGGATATATCAC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCAC
*
79514712 TAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACAAATGCTCC
66 TAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
79514767 TCGGGAC-TAGCCCGGATATATCACT
1 TCGGGACTTAGCCCGGATATATCACT
79514792 CAATTCTCAT
Statistics
Matches: 355, Mismatches: 11, Indels: 20
0.92 0.03 0.05
Matches are distributed among these distances:
114 48 0.14
115 18 0.05
116 79 0.22
117 14 0.04
118 42 0.12
119 108 0.30
120 46 0.13
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (120 bp):
TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCAC
TAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
Found at i:79516179 original size:36 final size:37
Alignment explanation
Indices: 79516059--79516195 Score: 231
Period size: 37 Copynumber: 3.7 Consensus size: 37
79516049 GCTCAGACGA
* * * *
79516059 AATCTCCACACGAAGTTATCGGGTCTTACCCAGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
79516096 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
79516133 AATCTCCACACGTAGTCATCGGGTCTTACCCGGAC-T
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
79516169 AATCTCCACACGTAGTCATCGGGTCTT
1 AATCTCCACACGTAGTCATCGGGTCTT
79516196 TAGAGCTCAG
Statistics
Matches: 96, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
36 28 0.29
37 68 0.71
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:79516582 original size:49 final size:47
Alignment explanation
Indices: 79516314--79517106 Score: 1253
Period size: 47 Copynumber: 16.6 Consensus size: 47
79516304 CCCTTCGGGA
* * * * * *
79516314 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
79516361 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCAATAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79516408 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79516455 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79516502 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79516549 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79516598 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79516645 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79516692 CTTATCACATATATACACTTTCACATTCGTCATATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
79516739 CTTATCACATATATATACACTTTCACATTCGTCACATTGGGCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79516788 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79516835 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79516884 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79516933 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79516982 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79517031 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79517080 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
79517107 TATTCAAATA
Statistics
Matches: 708, Mismatches: 32, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
47 377 0.53
49 331 0.47
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:79516595 original size:96 final size:96
Alignment explanation
Indices: 79516314--79517106 Score: 1301
Period size: 96 Copynumber: 8.3 Consensus size: 96
79516304 CCCTTCGGGA
* * * * * * * *
79516314 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
79516377 ACTTTCACATTCATCACATCGGCCAATAAGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
79516408 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
79516471 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
79516502 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
79516567 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
79516598 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
79516661 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
79516692 CTTATCACATATATACACTTTCACATTCGTCATATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* * * *
79516757 ACTTTCACATTCGTCACATTGGGCATTCGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
79516788 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
79516853 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
79516884 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
79516949 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
79516982 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
79517047 ACACTTTCACATTCATCACATCGGCTATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
79517080 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
79517107 TATTCAAATA
Statistics
Matches: 662, Mismatches: 31, Indels: 10
0.94 0.04 0.01
Matches are distributed among these distances:
94 226 0.34
96 244 0.37
98 192 0.29
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:79516654 original size:22 final size:22
Alignment explanation
Indices: 79516626--79516701 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
79516616 TTTCACATTC
79516626 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
79516648 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
79516672 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
79516695 ATCACAT
1 ATCACAT
79516702 ATATACACTT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:79527416 original size:27 final size:27
Alignment explanation
Indices: 79527386--79527441 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
79527376 CGTCAAGTAC
79527386 GTCCGTATAACCAATCGTACAATTTAT
1 GTCCGTATAACCAATCGTACAATTTAT
79527413 GTCCGTATAACCAATCGTACAATTTAT
1 GTCCGTATAACCAATCGTACAATTTAT
79527440 GT
1 GT
79527442 AATAATAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.34
Consensus pattern (27 bp):
GTCCGTATAACCAATCGTACAATTTAT
Found at i:79530034 original size:15 final size:15
Alignment explanation
Indices: 79530000--79530040 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
79529990 TAAAGATGAC
*
79530000 AAAGAAA-CCTAGAT
1 AAAGAAATCCAAGAT
79530014 AAAGAAATCCAAGAT
1 AAAGAAATCCAAGAT
*
79530029 AGAGAAATCCAA
1 AAAGAAATCCAA
79530041 AATACGATAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 7 0.29
15 17 0.71
ACGTcount: A:0.59, C:0.15, G:0.15, T:0.12
Consensus pattern (15 bp):
AAAGAAATCCAAGAT
Found at i:79543519 original size:43 final size:43
Alignment explanation
Indices: 79543439--79543564 Score: 139
Period size: 43 Copynumber: 2.9 Consensus size: 43
79543429 TATAACATAT
* * * * *
79543439 CGATGCCACTGTCCTGGATAGGGTCTTACCCGAAATCA-AATAA
1 CGATGCCAATGTCCCGGACATGGTCTTACACGAAATCACAAT-A
79543482 CGATGCCAATGTCCCGGACATGGTCTTACAC-ATAATCACAATA
1 CGATGCCAATGTCCCGGACATGGTCTTACACGA-AATCACAATA
* * * *
79543525 CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
1 CGATGCCAATGTCCCGGACATGGTCTTACACGAAATCACA
79543565 TCTCGGTAAC
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
42 1 0.01
43 67 0.94
44 3 0.04
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (43 bp):
CGATGCCAATGTCCCGGACATGGTCTTACACGAAATCACAATA
Found at i:79549029 original size:47 final size:47
Alignment explanation
Indices: 79548954--79549267 Score: 556
Period size: 47 Copynumber: 6.7 Consensus size: 47
79548944 TTCGGGACTC
* * * * * * *
79548954 ATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
*
79549001 GTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
79549048 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
79549095 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
79549142 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
79549189 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
79549236 ATCACATATATACACTTTCACATTCATCACAT
1 ATCACATATATACACTTTCACATTCATCACAT
79549268 TATCACATAT
Statistics
Matches: 258, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 258 1.00
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
Found at i:79549208 original size:141 final size:141
Alignment explanation
Indices: 79548954--79549435 Score: 767
Period size: 141 Copynumber: 3.5 Consensus size: 141
79548944 TTCGGGACTC
* * * * * * * *
79548954 ATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACTTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
79549019 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
66 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
79549084 CATTAGGCCTT
131 CATTAGGCCTT
79549095 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
79549160 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
66 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
79549225 CATTAGGCCTT
131 CATTAGGCCTT
79549236 ATCACATATATACACTTTCACATTCAT--CA-----C---A----TTATCACATATATACACTTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
*
79549287 CACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
66 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
79549352 CATTAGGCCTT
131 CATTAGGCCTT
79549363 ATCTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
1 A--TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
79549428 TTCACATT
64 TTCACATT
79549436 TATTCAAATA
Statistics
Matches: 316, Mismatches: 9, Indels: 30
0.89 0.03 0.08
Matches are distributed among these distances:
127 96 0.30
129 26 0.08
131 3 0.01
134 1 0.00
136 1 0.00
139 3 0.01
141 160 0.51
143 26 0.08
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (141 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
CATTAGGCCTT
Found at i:79549258 original size:16 final size:16
Alignment explanation
Indices: 79549237--79549291 Score: 69
Period size: 16 Copynumber: 3.4 Consensus size: 16
79549227 TTAGGCCTTA
79549237 TCACATATATACACTT
1 TCACATATATACACTT
79549253 TCACAT-TCAT-CACATT
1 TCACATAT-ATACAC-TT
79549269 ATCACATATATACACTT
1 -TCACATATATACACTT
79549286 TCACAT
1 TCACAT
79549292 TCATCACATC
Statistics
Matches: 34, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
15 4 0.12
16 16 0.47
17 10 0.29
18 4 0.12
ACGTcount: A:0.36, C:0.27, G:0.00, T:0.36
Consensus pattern (16 bp):
TCACATATATACACTT
Found at i:79549267 original size:9 final size:8
Alignment explanation
Indices: 79549234--79549300 Score: 52
Period size: 8 Copynumber: 8.1 Consensus size: 8
79549224 CCATTAGGCC
79549234 TTATCACA
1 TTATCACA
79549242 TATAT-ACA
1 T-TATCACA
79549250 CTT-TCACA
1 -TTATCACA
79549258 TTCATCACA
1 TT-ATCACA
79549267 TTATCACA
1 TTATCACA
79549275 TATAT-ACA
1 T-TATCACA
79549283 CTT-TCACA
1 -TTATCACA
79549291 TTCATCACA
1 TT-ATCACA
79549300 T
1 T
79549301 CGGCTATTAG
Statistics
Matches: 49, Mismatches: 0, Indels: 19
0.72 0.00 0.28
Matches are distributed among these distances:
7 6 0.12
8 22 0.45
9 21 0.43
ACGTcount: A:0.36, C:0.27, G:0.00, T:0.37
Consensus pattern (8 bp):
TTATCACA
Done.