Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 245 of 290
Found at i:79549272 original size:33 final size:33
Alignment explanation
Indices: 79549234--79549300 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
79549224 CCATTAGGCC
79549234 TTATCACATATATACACTTTCACATTCATCACA
1 TTATCACATATATACACTTTCACATTCATCACA
79549267 TTATCACATATATACACTTTCACATTCATCACA
1 TTATCACATATATACACTTTCACATTCATCACA
79549300 T
1 T
79549301 CGGCTATTAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.36, C:0.27, G:0.00, T:0.37
Consensus pattern (33 bp):
TTATCACATATATACACTTTCACATTCATCACA
Found at i:79549281 original size:80 final size:80
Alignment explanation
Indices: 79549187--79549347 Score: 313
Period size: 80 Copynumber: 2.0 Consensus size: 80
79549177 CCATTAGGCC
79549187 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
79549252 TTCACATTCATCACA
66 TTCACATTCATCACA
*
79549267 TTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACT
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
79549332 TTCACATTCATCACA
66 TTCACATTCATCACA
79549347 T
1 T
79549348 CGGCCATTAG
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 80 1.00
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (80 bp):
TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
TTCACATTCATCACA
Found at i:79549374 original size:49 final size:47
Alignment explanation
Indices: 79549267--79549435 Score: 311
Period size: 47 Copynumber: 3.6 Consensus size: 47
79549257 ATTCATCACA
*
79549267 TTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
79549314 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
79549361 TTATCTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTA--TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
79549410 TTATCACATATATACACTTTCACATT
1 TTATCACATATATACACTTTCACATT
79549436 TATTCAAATA
Statistics
Matches: 119, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
47 72 0.61
49 47 0.39
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.34
Consensus pattern (47 bp):
TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
Found at i:79552673 original size:40 final size:40
Alignment explanation
Indices: 79552628--79552907 Score: 429
Period size: 40 Copynumber: 7.0 Consensus size: 40
79552618 CGAATACACG
* * * *
79552628 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * * *
79552668 ACACCAGCACGAATGCTCTTCAGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
79552708 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
79552747 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
79552787 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
79552827 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
79552867 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT-CA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
79552906 TC
1 TC
79552908 GTCGAGACCT
Statistics
Matches: 220, Mismatches: 19, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
39 40 0.18
40 180 0.82
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:79552727 original size:80 final size:80
Alignment explanation
Indices: 79552628--79552903 Score: 473
Period size: 80 Copynumber: 3.5 Consensus size: 80
79552618 CGAATACACG
* * * * * *
79552628 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCAGAA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAA
79552693 CTTAGCCCGGATACA
66 CTTAGCCCGGATACA
79552708 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAA
79552772 CTTAGCCCGGATACA
66 CTTAGCCCGGATACA
* *
79552787 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAA
79552852 CTTAGCCCGGATACA
66 CTTAGCCCGGATACA
79552867 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
79552904 CATCGTCGAG
Statistics
Matches: 187, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
79 75 0.40
80 112 0.60
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAA
CTTAGCCCGGATACA
Found at i:79553030 original size:38 final size:38
Alignment explanation
Indices: 79552961--79553035 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
79552951 GAATTTTAAT
*
79552961 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* *
79552999 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
79553036 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:79555531 original size:47 final size:47
Alignment explanation
Indices: 79555418--79555956 Score: 650
Period size: 47 Copynumber: 11.5 Consensus size: 47
79555408 TTCGGGACTC
* * * * * *
79555418 ATCACATTTATACAC-TTCACATCCATCACGTTGGCCACTCGGCC-T
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
*
79555463 GTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
79555510 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
* **
79555557 ATCACATATATACACTTTCACATTCATCACAT---TCATATATACACTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCAT-TAGGC-CTT
* * *
79555603 -TCACAT-TGGCCATTAGGC-CTTATCACATAT-ATACACTTTC--ACATTCA-TCAC--
1 ATCACATAT----A-TA--CACTT-TCACAT-TCAT-CAC-ATCGGCCATT-AGGC-CTT
79555654 ATCACATATATACACTTTCACATTCATCACA-----CATTTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGCCTT
79555697 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
79555744 ATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
79555790 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
*
79555837 ATCACATATATACACTTTCACATTCTTCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
79555884 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
79555933 ATCACATATATACACTTTCACATT
1 ATCACATATATACACTTTCACATT
79555957 TATTCAAATA
Statistics
Matches: 443, Mismatches: 18, Indels: 64
0.84 0.03 0.12
Matches are distributed among these distances:
41 4 0.01
42 3 0.01
43 31 0.07
44 4 0.01
45 26 0.06
46 82 0.19
47 207 0.47
48 5 0.01
49 49 0.11
50 3 0.01
51 9 0.02
52 10 0.02
53 6 0.01
54 4 0.01
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.33
Consensus pattern (47 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
Found at i:79555614 original size:67 final size:68
Alignment explanation
Indices: 79555536--79555729 Score: 300
Period size: 67 Copynumber: 2.8 Consensus size: 68
79555526 TTCACATTCA
* *
79555536 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT-TCATATATACA
1 TCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCACATATATACA
79555600 CTT
66 CTT
79555603 TCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCACATATATACA
1 TCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCACATATATACA
79555668 CTT
66 CTT
**
79555671 TCACATTCATCACACATTTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
1 TCACA-T--TGGC-CA-TTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
79555730 GGCCATTAGG
Statistics
Matches: 117, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
67 52 0.44
68 18 0.15
69 1 0.01
71 2 0.02
72 2 0.02
73 42 0.36
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (68 bp):
TCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCACATATATACA
CTT
Found at i:79555660 original size:30 final size:30
Alignment explanation
Indices: 79555624--79555684 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
79555614 ATTAGGCCTT
79555624 ATCACATATATACACTTTCACATTCATCAC
1 ATCACATATATACACTTTCACATTCATCAC
79555654 ATCACATATATACACTTTCACATTCATCAC
1 ATCACATATATACACTTTCACATTCATCAC
79555684 A
1 A
79555685 CATTTAGGCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.38, C:0.30, G:0.00, T:0.33
Consensus pattern (30 bp):
ATCACATATATACACTTTCACATTCATCAC
Found at i:79555811 original size:93 final size:93
Alignment explanation
Indices: 79555654--79555956 Score: 533
Period size: 93 Copynumber: 3.3 Consensus size: 93
79555644 CATTCATCAC
79555654 ATCACATATATACACTTTCACATTCATCACA----CATTTAGGCCTTATCACATATATACACTTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCA-TTAGGCCTTATCACATATATACACTTT
79555715 CACATTCATCACATCGGCCATTAGGCCTT
65 CACATTCATCACATCGGCCATTAGGCCTT
79555744 ATCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTATCACATATATACACTTTC
1 ATCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTATCACATATATACACTTTC
79555809 ACATTCATCACATCGGCCATTAGGCCTT
66 ACATTCATCACATCGGCCATTAGGCCTT
*
79555837 ATCACATATATACACTTTCACATTCTTCACATCGGCCATTAGGCCTTATCACATATATATACACT
1 ATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGCCTTATCAC--ATATATACACT
79555902 TTCACATTCATCACATCGGCCATTAGGCCTT
63 TTCACATTCATCACATCGGCCATTAGGCCTT
79555933 ATCACATATATACACTTTCACATT
1 ATCACATATATACACTTTCACATT
79555957 TATTCAAATA
Statistics
Matches: 205, Mismatches: 1, Indels: 8
0.96 0.00 0.04
Matches are distributed among these distances:
90 31 0.15
93 90 0.44
94 18 0.09
96 66 0.32
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.33
Consensus pattern (93 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTATCACATATATACACTTTC
ACATTCATCACATCGGCCATTAGGCCTT
Found at i:79555881 original size:187 final size:185
Alignment explanation
Indices: 79555418--79555956 Score: 667
Period size: 187 Copynumber: 2.9 Consensus size: 185
79555408 TTCGGGACTC
* * * * * *
79555418 ATCACATTTATACAC-TTCACATCCATCACGTTGGCCACTCGGCCTGTCACATATATACACTTTC
1 ATCACA-TTATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTC
79555482 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
65 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
* *
79555547 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTCATATATACACTT
130 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATGCATATAGACACTT
* * *
79555603 -TCACATTGGCCATTAGGC-CTTATCACATAT-ATACACTTTC--ACATTCA-TCAC-ATCACAT
1 ATCACATT----A-TA--CACTT-TCACAT-TCAT-CAC-ATCGGCCATT-AGGC-CTATCACAT
79555661 ATATACACTTTCACATTCATCACA-----CATTTAGGCCTTATCACATATATACACTTTCACATT
53 ATATACACTTTCACATTCATCACATCGGCCA-TTAGGCCTTATCACATATATACACTTTCACATT
79555721 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCAT-TAG
117 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT--GCATATAG
*
79555785 GC-CTT
180 ACACTT
79555790 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
1 ATCACAT-TATACACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATACACTTT
*
79555855 CACATTCTTCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
64 CACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCG
79555920 GCCATTAGGCCTTATCACATATATACACTTTCACATT
127 GCCATTAGGCCTTATCACATATATACACTTTCACATT
79555957 TATTCAAATA
Statistics
Matches: 306, Mismatches: 15, Indels: 62
0.80 0.04 0.16
Matches are distributed among these distances:
180 2 0.01
181 6 0.02
182 14 0.05
183 35 0.11
184 7 0.02
185 1 0.00
186 2 0.01
187 106 0.35
188 13 0.04
189 71 0.23
190 2 0.01
191 42 0.14
192 4 0.01
193 1 0.00
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.33
Consensus pattern (185 bp):
ATCACATTATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTCA
CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
TTAGGCCTTATCACATATATACACTTTCACATTCATCACATGCATATAGACACTT
Found at i:79558391 original size:24 final size:24
Alignment explanation
Indices: 79558361--79558418 Score: 91
Period size: 24 Copynumber: 2.4 Consensus size: 24
79558351 AGTAGTATAC
79558361 GAAGATGAAAGGTG-AAGAGTTAAA
1 GAAGATGAAAGGTGAAAGA-TTAAA
*
79558385 GAAGATGAAAGGTGAAAGATTAAG
1 GAAGATGAAAGGTGAAAGATTAAA
79558409 GAAGATGAAA
1 GAAGATGAAA
79558419 ATTTGAACAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 28 0.88
25 4 0.12
ACGTcount: A:0.52, C:0.00, G:0.33, T:0.16
Consensus pattern (24 bp):
GAAGATGAAAGGTGAAAGATTAAA
Found at i:79564770 original size:40 final size:40
Alignment explanation
Indices: 79564740--79564925 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
79564730 GCTACTCGTT
* *
79564740 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
79564780 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
79564820 CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
79564860 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
79564901 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
79564926 CATCATTCGA
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 2 0.02
40 116 0.89
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:79573763 original size:25 final size:25
Alignment explanation
Indices: 79573735--79573783 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
79573725 TATATGGGTG
79573735 TTAATTTTGGGATTTGACTTTATAA
1 TTAATTTTGGGATTTGACTTTATAA
79573760 TTAATTTTGGGATTTGACTTTATA
1 TTAATTTTGGGATTTGACTTTATA
79573784 TATTTTTCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.27, C:0.04, G:0.16, T:0.53
Consensus pattern (25 bp):
TTAATTTTGGGATTTGACTTTATAA
Found at i:79584080 original size:46 final size:46
Alignment explanation
Indices: 79584028--79584202 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
79584018 TGTAACCCGC
* * *
79584028 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
* * *
79584074 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCAT
* * * *
79584124 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
*
79584167 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
79584203 ATGCCCAAAT
Statistics
Matches: 106, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 1 0.01
46 61 0.58
47 27 0.25
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
Found at i:79584142 original size:93 final size:93
Alignment explanation
Indices: 79584036--79584207 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
79584026 GCCCATAAGT
* * *
79584036 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTTGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
79584101 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
79584129 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
79584194 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
79584208 CAAATATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:79585523 original size:26 final size:26
Alignment explanation
Indices: 79585494--79585584 Score: 119
Period size: 26 Copynumber: 3.5 Consensus size: 26
79585484 TCAGGATATT
79585494 ACACATAGTGCTTAAATCCAACTCGC
1 ACACATAGTGCTTAAATCCAACTCGC
* * * * *
79585520 ACACTTAGTGCTCAGTATCAAATTCGC
1 ACACATAGTGCTTA-AATCCAACTCGC
79585547 ACACATAGTGCTTAAATCCAACTCGC
1 ACACATAGTGCTTAAATCCAACTCGC
*
79585573 ACACTTAGTGCT
1 ACACATAGTGCT
79585585 CAGTATCAAA
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
26 32 0.60
27 21 0.40
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26
Consensus pattern (26 bp):
ACACATAGTGCTTAAATCCAACTCGC
Found at i:79585549 original size:27 final size:27
Alignment explanation
Indices: 79585516--79585610 Score: 138
Period size: 27 Copynumber: 3.6 Consensus size: 27
79585506 TAAATCCAAC
79585516 TCGCACACTTAGTGCTCAGTATCAAAT
1 TCGCACACTTAGTGCTCAGTATCAAAT
* * * * *
79585543 TCGCACACATAGTGCTTA-AATCCAAC
1 TCGCACACTTAGTGCTCAGTATCAAAT
79585569 TCGCACACTTAGTGCTCAGTATCAAAT
1 TCGCACACTTAGTGCTCAGTATCAAAT
79585596 TCGCACACTTAGTGC
1 TCGCACACTTAGTGC
79585611 ATCCCTCAAA
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
26 21 0.37
27 36 0.63
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
TCGCACACTTAGTGCTCAGTATCAAAT
Found at i:79585574 original size:53 final size:53
Alignment explanation
Indices: 79585494--79585610 Score: 225
Period size: 53 Copynumber: 2.2 Consensus size: 53
79585484 TCAGGATATT
79585494 ACACATAGTGCTTAAATCCAACTCGCACACTTAGTGCTCAGTATCAAATTCGC
1 ACACATAGTGCTTAAATCCAACTCGCACACTTAGTGCTCAGTATCAAATTCGC
79585547 ACACATAGTGCTTAAATCCAACTCGCACACTTAGTGCTCAGTATCAAATTCGC
1 ACACATAGTGCTTAAATCCAACTCGCACACTTAGTGCTCAGTATCAAATTCGC
*
79585600 ACACTTAGTGC
1 ACACATAGTGC
79585611 ATCCCTCAAA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 63 1.00
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (53 bp):
ACACATAGTGCTTAAATCCAACTCGCACACTTAGTGCTCAGTATCAAATTCGC
Found at i:79585788 original size:32 final size:33
Alignment explanation
Indices: 79585752--79585841 Score: 105
Period size: 32 Copynumber: 2.8 Consensus size: 33
79585742 CTCAATCGGC
* * * *
79585752 TATATCAAACTACACCTAGATACACATTCGA-T
1 TATATCCAACTACACATATATACACATTCAACT
*
79585784 TATATCCAA-TCACACATATATAGACATTCAACT
1 TATATCCAACT-ACACATATATACACATTCAACT
79585817 T-TATCCAACTACACATATATACACA
1 TATATCCAACTACACATATATACACA
79585842 CTTAGTTATG
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
31 1 0.02
32 45 0.92
33 3 0.06
ACGTcount: A:0.42, C:0.26, G:0.03, T:0.29
Consensus pattern (33 bp):
TATATCCAACTACACATATATACACATTCAACT
Found at i:79591503 original size:19 final size:19
Alignment explanation
Indices: 79591461--79591503 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
79591451 TGTGTTGTTG
*
79591461 TTGTTGTTTATTTCGACTC
1 TTGTTGTTTACTTCGACTC
* * *
79591480 ATGTTGTTTACTTGGACTT
1 TTGTTGTTTACTTCGACTC
79591499 TTGTT
1 TTGTT
79591504 TATGTTCTTT
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.12, C:0.12, G:0.19, T:0.58
Consensus pattern (19 bp):
TTGTTGTTTACTTCGACTC
Found at i:79591603 original size:19 final size:19
Alignment explanation
Indices: 79591579--79591622 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
79591569 TTGTTGTTGT
79591579 TGTTGTTTACTTGGACTCA
1 TGTTGTTTACTTGGACTCA
* *
79591598 TGTTGTTTACTTGGGCTGA
1 TGTTGTTTACTTGGACTCA
79591617 TGTTGT
1 TGTTGT
79591623 GTTGTTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.11, C:0.11, G:0.27, T:0.50
Consensus pattern (19 bp):
TGTTGTTTACTTGGACTCA
Found at i:79591604 original size:3 final size:3
Alignment explanation
Indices: 79591525--79591585 Score: 97
Period size: 3 Copynumber: 20.7 Consensus size: 3
79591515 TATTATAATT
* *
79591525 TTG TTG -TG TCG TTG TTG TTG TTG TTG TTA TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
79591572 TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TT
79591586 TACTTGGACT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
2 2 0.04
3 51 0.96
ACGTcount: A:0.02, C:0.02, G:0.31, T:0.66
Consensus pattern (3 bp):
TTG
Found at i:79592285 original size:30 final size:30
Alignment explanation
Indices: 79592251--79592312 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
79592241 ACTTATTTTA
79592251 TTATTAATTTTGTTATTATTTTAAAGGCAT
1 TTATTAATTTTGTTATTATTTTAAAGGCAT
* *
79592281 TTATTAATTTTGTTATTATTTTAGAGGTAT
1 TTATTAATTTTGTTATTATTTTAAAGGCAT
79592311 TT
1 TT
79592313 GCTTAATAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.02, G:0.11, T:0.60
Consensus pattern (30 bp):
TTATTAATTTTGTTATTATTTTAAAGGCAT
Found at i:79592389 original size:24 final size:25
Alignment explanation
Indices: 79592362--79592408 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
79592352 ACATTTTTTT
79592362 AAAA-ATTTATTTTCAATTTGTTGG
1 AAAATATTTATTTTCAATTTGTTGG
* *
79592386 AAAATATTTATTTTGATTTTGTT
1 AAAATATTTATTTTCAATTTGTT
79592409 TAGTATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.32, C:0.02, G:0.11, T:0.55
Consensus pattern (25 bp):
AAAATATTTATTTTCAATTTGTTGG
Found at i:79593957 original size:16 final size:15
Alignment explanation
Indices: 79593938--79593976 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
79593928 ATTTTAAATT
79593938 TTATTATTCGTTTAAA
1 TTATTATTCGTTT-AA
79593954 TTATT-TATCGTTTAA
1 TTATTAT-TCGTTTAA
79593969 TTATTATT
1 TTATTATT
79593977 TAATATTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.62
Consensus pattern (15 bp):
TTATTATTCGTTTAA
Found at i:79593978 original size:18 final size:16
Alignment explanation
Indices: 79593930--79593973 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 16
79593920 TTTTTATGAT
*
79593930 TTTAAATTTTATTATTCG
1 TTTAAATTAT-TTA-TCG
79593948 TTTAAATTATTTATCG
1 TTTAAATTATTTATCG
79593964 TTT-AATTATT
1 TTTAAATTATT
79593974 ATTTAATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 7 0.28
16 6 0.24
17 3 0.12
18 9 0.36
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.61
Consensus pattern (16 bp):
TTTAAATTATTTATCG
Found at i:79594593 original size:30 final size:31
Alignment explanation
Indices: 79594558--79594621 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 31
79594548 ATAACTATGC
* *
79594558 TTTAATGTAATTTTATAAAT-AAATTTTTAT
1 TTTAATGTAATTATACAAATAAAATTTTTAT
* *
79594588 TTTAATTTAATTATACATATAAAATTTTTAT
1 TTTAATGTAATTATACAAATAAAATTTTTAT
79594619 TTT
1 TTT
79594622 TATTTAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 16 0.55
31 13 0.45
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (31 bp):
TTTAATGTAATTATACAAATAAAATTTTTAT
Found at i:79594958 original size:7 final size:8
Alignment explanation
Indices: 79594925--79594957 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
79594915 TTTTTGGATT
79594925 AATTTT-A
1 AATTTTAA
79594932 AATTTTAAA
1 AATTTT-AA
79594941 AATTTTAA
1 AATTTTAA
79594949 AATTTTAA
1 AATTTTAA
79594957 A
1 A
79594958 TAAAATATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
7 6 0.25
8 11 0.46
9 7 0.29
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
AATTTTAA
Found at i:79595781 original size:34 final size:35
Alignment explanation
Indices: 79595737--79595803 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
79595727 CAGTAAAATG
* *
79595737 TTTTCCGTAAAACGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAACAATTTACTGGAAAATATTTTAC
* *
79595771 TTTTCTGTAAAATAATTTACTGGAAAATATTTT
1 TTTTCCGTAAAACAATTTACTGGAAAATATTTT
79595804 CTAGTGTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 15 0.54
35 13 0.46
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAACAATTTACTGGAAAATATTTTAC
Found at i:79595789 original size:20 final size:20
Alignment explanation
Indices: 79595752--79595791 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
79595742 CGTAAAACGA
**
79595752 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATAATTTACT
*
79595772 TTTCTGTAAAATAATTTACT
1 TTTCTGGAAAATAATTTACT
79595792 GGAAAATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATAATTTACT
Found at i:79598137 original size:19 final size:19
Alignment explanation
Indices: 79598113--79598152 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
79598103 AAACCAAATC
79598113 AAGGGAGAACGAAAGGGAG
1 AAGGGAGAACGAAAGGGAG
*
79598132 AAGGGAGAACGAACGGGAG
1 AAGGGAGAACGAAAGGGAG
79598151 AA
1 AA
79598153 CGAAACCAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.47, C:0.07, G:0.45, T:0.00
Consensus pattern (19 bp):
AAGGGAGAACGAAAGGGAG
Found at i:79605161 original size:30 final size:29
Alignment explanation
Indices: 79605122--79605178 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
79605112 TACGACCAGG
*
79605122 CACAGGGGCATGTGGCCAAGCCGTGTGAAC
1 CACACGGGCATGTGG-CAAGCCGTGTGAAC
*
79605152 CACACGGGCATGTGGCAGGCCGTGTGA
1 CACACGGGCATGTGGCAAGCCGTGTGA
79605179 TCGGCCGTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.21, C:0.26, G:0.39, T:0.14
Consensus pattern (29 bp):
CACACGGGCATGTGGCAAGCCGTGTGAAC
Found at i:79606908 original size:42 final size:40
Alignment explanation
Indices: 79606861--79606938 Score: 104
Period size: 42 Copynumber: 1.9 Consensus size: 40
79606851 TACAGAGGTT
* *
79606861 TTCACACGGCC-TGGCACACGCCCGTGTCCCTGGCCCGTGTCC
1 TTCACACGGCCAT-G-ACACACCCGTGT-CCTAGCCCGTGTCC
79606903 TTCACACGGCCATGACACACCCGTGTCCTAGCCCGT
1 TTCACACGGCCATGACACACCCGTGTCCTAGCCCGT
79606939 ATGCAAAAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 9 0.27
41 11 0.33
42 12 0.36
43 1 0.03
ACGTcount: A:0.14, C:0.44, G:0.23, T:0.19
Consensus pattern (40 bp):
TTCACACGGCCATGACACACCCGTGTCCTAGCCCGTGTCC
Found at i:79608220 original size:26 final size:26
Alignment explanation
Indices: 79608191--79608298 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
79608181 TGGTACAAAT
*
79608191 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
79608217 TGATAATGGATTAGATAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
79608243 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
79608269 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
79608295 TGAT
1 TGAT
79608299 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:79611047 original size:47 final size:50
Alignment explanation
Indices: 79610945--79611166 Score: 184
Period size: 47 Copynumber: 4.6 Consensus size: 50
79610935 GGGGTGCTAC
* *
79610945 ATGCCATGTCCCAGACACGGTCTTACACT-AGCTCAT-GTCTCATGT---CG
1 ATGCCATGTCCCAGACATGGTCTTACACTGA-CTCATCATCT-ATGTAGCCG
79610992 ATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTA-GTAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTCATCATCTATGTAGCCG
* * * *
79611040 ATG-CATGTCCCAGACAT-ATCTTACACTAGTACTCGTC-TCGATGCCGATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACT-G-ACTCATCATCTATG--TA-GCCG
* * * * *
79611092 ATGCCATATCCCAGACATGGTCTTACACTGGCTC-TCAT-AATGTGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTCATCATCTATGTAGCCG
79611140 ATG-CATGTCCCAGACAT-GTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
79611167 AGCCCATAAT
Statistics
Matches: 146, Mismatches: 14, Indels: 31
0.76 0.07 0.16
Matches are distributed among these distances:
45 2 0.01
46 22 0.15
47 61 0.42
48 18 0.12
49 3 0.02
51 6 0.04
52 11 0.08
53 14 0.10
54 9 0.06
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (50 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGACTCATCATCTATGTAGCCG
Found at i:79613603 original size:16 final size:15
Alignment explanation
Indices: 79613566--79613626 Score: 52
Period size: 15 Copynumber: 3.8 Consensus size: 15
79613556 CTCCCCCCAA
79613566 TTTTTCTGTCGTTCCTTT
1 TTTTTCT-TC-TT-CTTT
79613584 TTTTT-TTCCTTCTTT
1 TTTTTCTT-CTTCTTT
*
79613599 CTTTTTCTTCTTCTTC
1 -TTTTTCTTCTTCTTT
*
79613615 TTCTTCTTCTTC
1 TTTTTCTTCTTC
79613627 CCTCAACCCA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
15 15 0.39
16 14 0.37
17 4 0.11
18 5 0.13
ACGTcount: A:0.00, C:0.26, G:0.03, T:0.70
Consensus pattern (15 bp):
TTTTTCTTCTTCTTT
Found at i:79613609 original size:3 final size:3
Alignment explanation
Indices: 79613592--79613626 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
79613582 TTTTTTTTTC
*
79613592 CTT CTTT CTT TTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT C-TT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
79613627 CCTCAACCCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
CTT
Found at i:79614826 original size:3 final size:3
Alignment explanation
Indices: 79614818--79614865 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
79614808 TGGGTTGAAG
79614818 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
79614866 AGGGGGAAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:79616486 original size:13 final size:14
Alignment explanation
Indices: 79616452--79616481 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
79616442 AATAAGAGTT
79616452 TAACTAGAAAAAGA
1 TAACTAGAAAAAGA
79616466 TAACTAGAAAAAGA
1 TAACTAGAAAAAGA
79616480 TA
1 TA
79616482 GTAGAGTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.63, C:0.07, G:0.13, T:0.17
Consensus pattern (14 bp):
TAACTAGAAAAAGA
Found at i:79618363 original size:30 final size:30
Alignment explanation
Indices: 79618327--79618415 Score: 97
Period size: 30 Copynumber: 3.0 Consensus size: 30
79618317 CTTGATCAAC
*** *
79618327 AGATAGCCACAAAGTTTTCCATACATTATT
1 AGATAGCCACAAAGGCATCCATACATCATT
*
79618357 AGATAGCCATAAAGGCATCCATACATCATT
1 AGATAGCCACAAAGGCATCCATACATCATT
* * * *
79618387 AAATAACCACAAAGGCGTCCAAACATCAT
1 AGATAGCCACAAAGGCATCCATACATCAT
79618416 ACGCTAAACT
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.42, C:0.24, G:0.11, T:0.24
Consensus pattern (30 bp):
AGATAGCCACAAAGGCATCCATACATCATT
Found at i:79618533 original size:29 final size:29
Alignment explanation
Indices: 79618499--79618569 Score: 97
Period size: 29 Copynumber: 2.4 Consensus size: 29
79618489 CAAAAGCTTC
** *
79618499 CACATATAACATATTCTGCCACTAGGGCT
1 CACATATAACATATTCCACCACAAGGGCT
* *
79618528 TACATATAGCATATTCCACCACAAGGGCT
1 CACATATAACATATTCCACCACAAGGGCT
79618557 CACATATAACATA
1 CACATATAACATA
79618570 GAATAGCCAC
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.37, C:0.27, G:0.11, T:0.25
Consensus pattern (29 bp):
CACATATAACATATTCCACCACAAGGGCT
Found at i:79621138 original size:16 final size:17
Alignment explanation
Indices: 79621107--79621140 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
79621097 AGATATAATG
79621107 TTAGAAACTAAAAAAAT
1 TTAGAAACTAAAAAAAT
79621124 TTAGAAACTAAAAAAAT
1 TTAGAAACTAAAAAAAT
79621141 AAATTAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.24
Consensus pattern (17 bp):
TTAGAAACTAAAAAAAT
Found at i:79621239 original size:33 final size:31
Alignment explanation
Indices: 79621187--79621251 Score: 87
Period size: 31 Copynumber: 2.0 Consensus size: 31
79621177 ATTATACATG
*
79621187 AAATATATATTTTAAAATTTTAAATATAATGAT
1 AAATATATATTTGAAAA-TTT-AATATAATGAT
79621220 AAATAT-TATTTGAATAATTTAATATAATGAT
1 AAATATATATTTGAA-AATTTAATATAATGAT
79621251 A
1 A
79621252 TTTAATATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
31 12 0.40
32 10 0.33
33 8 0.27
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.45
Consensus pattern (31 bp):
AAATATATATTTGAAAATTTAATATAATGAT
Found at i:79623575 original size:9 final size:9
Alignment explanation
Indices: 79623475--79623754 Score: 74
Period size: 9 Copynumber: 29.6 Consensus size: 9
79623465 AAAACTAAAA
79623475 AAAAACTTAT
1 AAAAA-TTAT
*
79623485 AAAAAATCAT
1 -AAAAATTAT
*
79623495 AAAAAGTAT
1 AAAAATTAT
*
79623504 CAAAA-TAT
1 AAAAATTAT
79623512 AAAAATTATT
1 AAAAATTA-T
* *
79623522 ATATATTA-
1 AAAAATTAT
79623530 AAAAA-TATT
1 AAAAATTA-T
*
79623539 AAAAAATAT
1 AAAAATTAT
*
79623548 GAAAATTGAT
1 AAAAATT-AT
*
79623558 ATGAAATTAT
1 A-AAAATTAT
79623568 AAAAATTAT
1 AAAAATTAT
*
79623577 -AAAACTAT
1 AAAAATTAT
79623585 ATAAAATCTA-
1 A-AAAAT-TAT
79623595 ATAAAATCTA-
1 A-AAAAT-TAT
79623605 ATAAAATCTA-
1 A-AAAAT-TAT
*
79623615 ATAAATTAT
1 AAAAATTAT
*
79623624 AAAAAATAT
1 AAAAATTAT
* * *
79623633 AGAACTAAT
1 AAAAATTAT
*
79623642 AAAACATTTTT
1 AAAA-A-TTAT
*
79623653 AAAATTTTTAT
1 AAAA--ATTAT
*
79623664 AAAAA-CAT
1 AAAAATTAT
*
79623672 ACTAAAATTCT
1 A--AAAATTAT
79623683 ATAAAATTCAT
1 A-AAAATT-AT
*
79623694 AAAAAATAT
1 AAAAATTAT
79623703 AAAAA-TAT
1 AAAAATTAT
* *
79623711 TAAAAGTAT
1 AAAAATTAT
*
79623720 TAAAATTGAT
1 AAAAATT-AT
**
79623730 ATAAGCTTAT
1 A-AAAATTAT
79623740 AAAAATTATT
1 AAAAATTA-T
79623750 AAAAA
1 AAAAA
79623755 GTCATTATAA
Statistics
Matches: 204, Mismatches: 43, Indels: 45
0.70 0.15 0.15
Matches are distributed among these distances:
7 2 0.01
8 29 0.14
9 71 0.35
10 69 0.34
11 33 0.16
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (9 bp):
AAAAATTAT
Found at i:79623600 original size:20 final size:20
Alignment explanation
Indices: 79623575--79623619 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 20
79623565 TATAAAAATT
79623575 ATAAAA-CTATATAAAATCTA
1 ATAAAATCTA-ATAAAATCTA
79623595 ATAAAATCTAATAAAATCTA
1 ATAAAATCTAATAAAATCTA
79623615 ATAAA
1 ATAAA
79623620 TTATAAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 21 0.88
21 3 0.12
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.29
Consensus pattern (20 bp):
ATAAAATCTAATAAAATCTA
Found at i:79623898 original size:13 final size:13
Alignment explanation
Indices: 79623880--79623904 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79623870 GAACCAAATT
79623880 TTTTTATTTTTTA
1 TTTTTATTTTTTA
79623893 TTTTTATTTTTT
1 TTTTTATTTTTT
79623905 TAAATTTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTATTTTTTA
Found at i:79624189 original size:9 final size:9
Alignment explanation
Indices: 79624172--79624398 Score: 85
Period size: 9 Copynumber: 24.6 Consensus size: 9
79624162 TTTATGATTT
79624172 TTTTATATAA
1 TTTT-TATAA
79624182 TTTTTATAA
1 TTTTTATAA
*
79624191 GTTTATATCAA
1 -TTTTTAT-AA
* *
79624202 TTTTAATAT
1 TTTTTATAA
*
79624211 TTTTTATTAT
1 TTTTTA-TAA
*
79624221 TTTTTAAGAA
1 TTTTT-ATAA
* *
79624231 TTCTAATACA
1 TTTTTATA-A
79624241 TTTTT-TAA
1 TTTTTATAA
*
79624249 TTTTGACT-A
1 TTTTTA-TAA
*
79624258 TTTTAAATAA
1 TTTT-TATAA
*
79624268 GTTTTATTAA
1 TTTTTA-TAA
* *
79624278 -ATTTATAT
1 TTTTTATAA
* *
79624286 TTTATTAGAT
1 TTT-TTATAA
79624296 TTTTTAT-A
1 TTTTTATAA
79624304 TTTTTATAA
1 TTTTTATAA
*
79624313 TATTTATAA
1 TTTTTATAA
79624322 GTTTTTTATAA
1 --TTTTTATAA
*
79624333 TTTTGATAA
1 TTTTTATAA
*
79624342 GTTTATATTAA
1 -TTTTTA-TAA
*
79624353 TTTTAAT-A
1 TTTTTATAA
79624361 -TTTTATAA
1 TTTTTATAA
*
79624369 TATTTA-ATA
1 TTTTTATA-A
79624378 TTTTTAT--
1 TTTTTATAA
79624385 TTTTTATAA
1 TTTTTATAA
79624394 TTTTT
1 TTTTT
79624399 TTCTTATTTT
Statistics
Matches: 162, Mismatches: 32, Indels: 47
0.67 0.13 0.20
Matches are distributed among these distances:
7 12 0.07
8 17 0.10
9 63 0.39
10 56 0.35
11 14 0.09
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:79624206 original size:11 final size:10
Alignment explanation
Indices: 79624172--79624367 Score: 61
Period size: 10 Copynumber: 20.7 Consensus size: 10
79624162 TTTATGATTT
79624172 TTTTATATAA
1 TTTTATATAA
79624182 TTTT-TATAA
1 TTTTATATAA
*
79624191 GTTTATATCAA
1 TTTTATAT-AA
79624202 TTTTA-AT-A
1 TTTTATATAA
* *
79624210 TTTTTTATTA
1 TTTTATATAA
* *
79624220 TTTTTTAAGAA
1 TTTTAT-ATAA
*
79624231 TTCTA-ATACA
1 TTTTATATA-A
79624241 TTTT-T-TAA
1 TTTTATATAA
*
79624249 TTTTGA-CT-A
1 TTTT-ATATAA
*
79624258 TTTTAAATAA
1 TTTTATATAA
79624268 GTTTTAT-TAA
1 -TTTTATATAA
*
79624278 -ATT-TAT-A
1 TTTTATATAA
79624285 TTTTAT-TAGA
1 TTTTATATA-A
*
79624295 TTTTTTAT-A
1 TTTTATATAA
79624304 TTTT-TATAA
1 TTTTATATAA
*
79624313 TATTTATA-AG
1 T-TTTATATAA
*
79624323 TTTTTTATAA
1 TTTTATATAA
*
79624333 TTTT-GATAA
1 TTTTATATAA
*
79624342 GTTTATATTAA
1 TTTTATA-TAA
79624353 TTTTA-AT-A
1 TTTTATATAA
79624361 TTTTATA
1 TTTTATA
79624368 ATATTTAATA
Statistics
Matches: 139, Mismatches: 21, Indels: 53
0.65 0.10 0.25
Matches are distributed among these distances:
7 2 0.01
8 26 0.19
9 42 0.30
10 43 0.31
11 26 0.19
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (10 bp):
TTTTATATAA
Found at i:79624320 original size:17 final size:16
Alignment explanation
Indices: 79624297--79624398 Score: 64
Period size: 20 Copynumber: 5.8 Consensus size: 16
79624287 TTATTAGATT
79624297 TTTTATATTTTTATAA
1 TTTTATATTTTTATAA
79624313 TATTTATAAGTTTTTTATAA
1 T-TTTAT-A--TTTTTATAA
*
79624333 TTTTGATAAGTTTATATTAA
1 TTTT-AT-A-TTTTTA-TAA
79624353 TTTTA-ATATTTTATAA
1 TTTTATAT-TTTTATAA
*
79624369 TATTTAATATTTTTAT-T
1 T-TTT-ATATTTTTATAA
79624386 TTTTATAATTTTT
1 TTTTAT-ATTTTT
79624399 TTCTTATTTT
Statistics
Matches: 71, Mismatches: 4, Indels: 22
0.73 0.04 0.23
Matches are distributed among these distances:
15 2 0.03
16 15 0.21
17 14 0.20
18 8 0.11
19 11 0.15
20 21 0.30
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (16 bp):
TTTTATATTTTTATAA
Found at i:79624327 original size:20 final size:20
Alignment explanation
Indices: 79624304--79624374 Score: 71
Period size: 20 Copynumber: 3.8 Consensus size: 20
79624294 ATTTTTTATA
79624304 TTTTTATAATATTTATAAGT
1 TTTTTATAATATTTATAAGT
79624324 TTTTTATAAT-TTTGATAAG-
1 TTTTTATAATATTT-ATAAGT
* *
79624343 TTTATATTA-ATTT-TAA-T
1 TTTTTATAATATTTATAAGT
*
79624360 ATTTTATAATATTTA
1 TTTTTATAATATTTA
79624375 ATATTTTTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 11
0.72 0.09 0.19
Matches are distributed among these distances:
17 9 0.22
18 4 0.10
19 13 0.32
20 15 0.37
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (20 bp):
TTTTTATAATATTTATAAGT
Found at i:79624367 original size:19 final size:17
Alignment explanation
Indices: 79624343--79624390 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
79624333 TTTTGATAAG
79624343 TTTATATTAATTTTAATAT
1 TTTATATT-A-TTTAATAT
*
79624362 TTTATAATATTTAATAT
1 TTTATATTATTTAATAT
*
79624379 TTT-TATTTTTTA
1 TTTATATTATTTA
79624391 TAATTTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
16 7 0.27
17 11 0.42
18 1 0.04
19 7 0.27
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTATATTATTTAATAT
Found at i:79627599 original size:22 final size:22
Alignment explanation
Indices: 79627571--79627626 Score: 87
Period size: 22 Copynumber: 2.5 Consensus size: 22
79627561 AATATTAGCT
*
79627571 TCCATTG-ATGCCCCAAAAGAAC
1 TCCATTGCA-GCCACAAAAGAAC
79627593 TCCATTGCAGCCACAAAAGAAC
1 TCCATTGCAGCCACAAAAGAAC
79627615 TCCATTGCAGCC
1 TCCATTGCAGCC
79627627 TTTCACTTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
22 31 0.97
23 1 0.03
ACGTcount: A:0.34, C:0.34, G:0.14, T:0.18
Consensus pattern (22 bp):
TCCATTGCAGCCACAAAAGAAC
Found at i:79630606 original size:37 final size:37
Alignment explanation
Indices: 79630565--79630645 Score: 90
Period size: 37 Copynumber: 2.2 Consensus size: 37
79630555 TTGGTAACGG
*** *
79630565 TAACAATATCAGTGGTGTGCTTAACATGCTTTCGGTT
1 TAACAATATCAGTGACATGCTTAACATGCTTTCGATT
* * * *
79630602 TAACAATTTTAGTGACATGTTTAACATGCTTTTGATT
1 TAACAATATCAGTGACATGCTTAACATGCTTTCGATT
79630639 TAACAAT
1 TAACAAT
79630646 TTTTGTATCA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.41
Consensus pattern (37 bp):
TAACAATATCAGTGACATGCTTAACATGCTTTCGATT
Found at i:79630677 original size:37 final size:36
Alignment explanation
Indices: 79630586--79630678 Score: 98
Period size: 37 Copynumber: 2.5 Consensus size: 36
79630576 GTGGTGTGCT
* **
79630586 TAACATGCTTTCGGTTTAACAATTTTAGTGACATGTT
1 TAACATGCTTTC-ATTTAACAATTTTAGTGACATGCC
* *
79630623 TAACATGCTTTTGATTTAACAATTTTTGT-ATCATGCC
1 TAACATGC-TTTCATTTAACAATTTTAGTGA-CATGCC
79630660 TAATCATGCTTTCATTTAA
1 TAA-CATGCTTTCATTTAA
79630679 AAAAAATCAT
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
36 1 0.02
37 38 0.81
38 8 0.17
ACGTcount: A:0.28, C:0.15, G:0.12, T:0.45
Consensus pattern (36 bp):
TAACATGCTTTCATTTAACAATTTTAGTGACATGCC
Found at i:79634056 original size:12 final size:13
Alignment explanation
Indices: 79634033--79634061 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
79634023 CAAATGAATT
79634033 ATTTCTCATTTTC
1 ATTTCTCATTTTC
79634046 ATTTC-CATTTTC
1 ATTTCTCATTTTC
79634058 ATTT
1 ATTT
79634062 TTAAGAGACC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.17, C:0.21, G:0.00, T:0.62
Consensus pattern (13 bp):
ATTTCTCATTTTC
Found at i:79642711 original size:33 final size:31
Alignment explanation
Indices: 79642674--79642751 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
79642664 CCATGTTAAT
* * *
79642674 TGTCCTAGTGGACTATCTTTTTTCTGTGTTTAC
1 TGTCCTAGTAGACTATC--TCTTCTGTGATTAC
*
79642707 TGTCCTTGTAGACTATCTCTTCTGTGATTAC
1 TGTCCTAGTAGACTATCTCTTCTGTGATTAC
*
79642738 TGTCCTAGCAGACT
1 TGTCCTAGTAGACT
79642752 GTCTTTGTCG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
31 24 0.62
33 15 0.38
ACGTcount: A:0.15, C:0.22, G:0.18, T:0.45
Consensus pattern (31 bp):
TGTCCTAGTAGACTATCTCTTCTGTGATTAC
Found at i:79648772 original size:21 final size:21
Alignment explanation
Indices: 79648742--79648790 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
79648732 TTTGTGGTTA
*
79648742 ATGTTGAGTAATATGCAAATT
1 ATGTTTAGTAATATGCAAATT
79648763 ATGTTTAGTAATATGCAAATT
1 ATGTTTAGTAATATGCAAATT
79648784 ATGTTTA
1 ATGTTTA
79648791 CTACTTGATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.37, C:0.04, G:0.16, T:0.43
Consensus pattern (21 bp):
ATGTTTAGTAATATGCAAATT
Found at i:79648988 original size:46 final size:46
Alignment explanation
Indices: 79648934--79649106 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
79648924 TGGTTGAGCA
* *
79648934 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
79648980 TCCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
79649027 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
79649073 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
79649107 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 58 0.56
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:79649090 original size:93 final size:93
Alignment explanation
Indices: 79648931--79649101 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
79648921 GGATGGTTGA
* *
79648931 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAATGTCCAAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCAAACTCGTTGAGT
79648996 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * * *
79649024 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCAAACTCGTTGAGT
*
79649089 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
79649102 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCAAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:79649368 original size:19 final size:20
Alignment explanation
Indices: 79649331--79649368 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
79649321 ATAAGGTGGT
79649331 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
79649351 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
79649369 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:79652900 original size:26 final size:26
Alignment explanation
Indices: 79652844--79652905 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
79652834 TTTACCTTCA
*
79652844 GTAAAATTTTGATGATTTTAACATCG
1 GTAAAATTTTGACGATTTTAACATCG
* *
79652870 ATAAAATTTTGACGATTTTATATAT-G
1 GTAAAATTTTGACGATTTTA-ACATCG
79652896 GTAAAATTTT
1 GTAAAATTTT
79652906 TTGAAAATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 28 0.90
27 3 0.10
ACGTcount: A:0.37, C:0.05, G:0.13, T:0.45
Consensus pattern (26 bp):
GTAAAATTTTGACGATTTTAACATCG
Found at i:79654783 original size:79 final size:80
Alignment explanation
Indices: 79654650--79654869 Score: 329
Period size: 79 Copynumber: 2.8 Consensus size: 80
79654640 CGGATGTAAC
*
79654650 AACCAGCACGAATGCCTTCGGGACTTAGCCCGGTTATTATAACCCGCACGAATGCCTTCGGGACT
1 AACCAGCACGAATGCCTTCGGGACTTAGCCCGGTTATAATAACCCGCACGAATGCCTTCGGGACT
*
79654715 TAACCTGGTTATAAT
66 TAACCCGGTTATAAT
* * *
79654730 AACCCGCACGAATGCCTTCGGGAC-TAACCCGGTTATAATAACCCACACGAATGCCTTCGGGACT
1 AACCAGCACGAATGCCTTCGGGACTTAGCCCGGTTATAATAACCCGCACGAATGCCTTCGGGACT
79654794 TAACCCGGTTATAAT
66 TAACCCGGTTATAAT
* * *
79654809 AACTAGCAC-AATTGCCTTC-GGATCTTAGTCTGGTTATAATAACCCGCACGAATGCCTTCGG
1 AACCAGCACGAA-TGCCTTCGGGA-CTTAGCCCGGTTATAATAACCCGCACGAATGCCTTCGG
79654870 ATCTTAGTCC
Statistics
Matches: 126, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
78 5 0.04
79 66 0.52
80 55 0.44
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (80 bp):
AACCAGCACGAATGCCTTCGGGACTTAGCCCGGTTATAATAACCCGCACGAATGCCTTCGGGACT
TAACCCGGTTATAAT
Found at i:79654878 original size:40 final size:40
Alignment explanation
Indices: 79654650--79654869 Score: 311
Period size: 40 Copynumber: 5.5 Consensus size: 40
79654640 CGGATGTAAC
* * *
79654650 AACCAGCACGAATGCCTTCGGGACTTAGCCCGGTTATTAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
79654690 AACCCGCACGAATGCCTTCGGGACTTAACCTGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
79654730 AACCCGCACGAATGCCTTCGGGAC-TAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
79654769 AACCCACACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
** ** *
79654809 AACTAGCAC-AATTGCCTTC-GGATCTTAGTCTGGTTATAAT
1 AACCCGCACGAA-TGCCTTCGGGA-CTTAACCCGGTTATAAT
79654849 AACCCGCACGAATGCCTTCGG
1 AACCCGCACGAATGCCTTCGG
79654870 ATCTTAGTCC
Statistics
Matches: 161, Mismatches: 14, Indels: 9
0.88 0.08 0.05
Matches are distributed among these distances:
39 42 0.26
40 116 0.72
41 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:79656412 original size:13 final size:13
Alignment explanation
Indices: 79656396--79656423 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
79656386 TTTATTATTT
79656396 TTAACACAAAATA
1 TTAACACAAAATA
79656409 TTAACACAAAATA
1 TTAACACAAAATA
79656422 TT
1 TT
79656424 TATAATATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (13 bp):
TTAACACAAAATA
Found at i:79663226 original size:40 final size:40
Alignment explanation
Indices: 79663034--79663214 Score: 258
Period size: 40 Copynumber: 4.5 Consensus size: 40
79663024 CGGATGTAAC
* *
79663034 AACCAGCACGAATACCTTCGGGACTTAGCCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAAT
*
79663074 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAAT
*
79663114 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAAT
** * *
79663154 AACTAGCAC-AATTGCCTT-TGGATCTTAGTCCGGTTATAAT
1 AACCCGCACGAA-TGCCTTCGGGA-CTTAGCCCGGTTATAAT
79663194 AACCCGCACGAATGCCTTCGG
1 AACCCGCACGAATGCCTTCGG
79663215 ATCTTAGTCC
Statistics
Matches: 126, Mismatches: 11, Indels: 7
0.88 0.08 0.05
Matches are distributed among these distances:
39 5 0.04
40 118 0.94
41 3 0.02
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAAT
Found at i:79664756 original size:13 final size:13
Alignment explanation
Indices: 79664740--79664767 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
79664730 TTTATTATTT
79664740 TTAACACAAAATA
1 TTAACACAAAATA
79664753 TTAACACAAAATA
1 TTAACACAAAATA
79664766 TT
1 TT
79664768 TATAATATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (13 bp):
TTAACACAAAATA
Found at i:79668425 original size:46 final size:46
Alignment explanation
Indices: 79668372--79668464 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
79668362 CATCAAATAA
*
79668372 ATATTTCCCACCTCGATCAGATTGAAGTGCCTTTATGGGTAAACTT
1 ATATTTCCCACCTCAATCAGATTGAAGTGCCTTTATGGGTAAACTT
79668418 ATATTTCCCACCTCAATCAGATTGAAGTGCCTTTATGGGTAAACTT
1 ATATTTCCCACCTCAATCAGATTGAAGTGCCTTTATGGGTAAACTT
79668464 A
1 A
79668465 GTTGTTTCTC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (46 bp):
ATATTTCCCACCTCAATCAGATTGAAGTGCCTTTATGGGTAAACTT
Found at i:79672560 original size:42 final size:42
Alignment explanation
Indices: 79672509--79672625 Score: 144
Period size: 43 Copynumber: 2.8 Consensus size: 42
79672499 TGAGATTACG
*
79672509 TGTAAGACCATATCTGGGATATGGCATCGATAAAAGATTTCC
1 TGTAAGACCATATCTGGGATATGGCATCGATAAAAGATTTCA
* * * **
79672551 TTTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATTTCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATAAAAGATTTCA
* * *
79672594 TGTAAGACTATATCTAGGATATGGCATTGATA
1 TGTAAGACCATATCTGGGATATGGCATCGATA
79672626 TGGTACTATG
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
42 28 0.45
43 34 0.55
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATAAAAGATTTCA
Found at i:79672590 original size:43 final size:42
Alignment explanation
Indices: 79672499--79672627 Score: 150
Period size: 42 Copynumber: 3.0 Consensus size: 42
79672489 TAGGGTTCGT
* *
79672499 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
1 TGAGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
** * * * *
79672541 AAAGATTTCCTTTAAGACCATAGCTGGGCTATTGGCATCGATA
1 TGAGATTTCATGTAAGACCATATCTGGGATA-TGGCATCGATA
* * *
79672584 TGAGATTTCATGTAAGACTATATCTAGGATATGGCATTGATA
1 TGAGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
79672626 TG
1 TG
79672628 GTACTATGTG
Statistics
Matches: 70, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
42 36 0.51
43 34 0.49
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (42 bp):
TGAGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:79673334 original size:15 final size:15
Alignment explanation
Indices: 79673306--79673339 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
79673296 GTAATTGATG
*
79673306 TGTGGATGACTTGGT
1 TGTGGATGAATTGGT
*
79673321 TGTGGTTGAATTGGT
1 TGTGGATGAATTGGT
79673336 TGTG
1 TGTG
79673340 TGCATATGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.03, G:0.41, T:0.44
Consensus pattern (15 bp):
TGTGGATGAATTGGT
Found at i:79679627 original size:26 final size:26
Alignment explanation
Indices: 79679598--79679705 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
79679588 TGGTACAAAT
79679598 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
79679624 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
79679650 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
79679676 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
79679702 TGAT
1 TGAT
79679706 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:79681388 original size:53 final size:54
Alignment explanation
Indices: 79681299--79681441 Score: 236
Period size: 53 Copynumber: 2.7 Consensus size: 54
79681289 TGGAGGAAGC
79681299 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATAGCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATAGCT
*
79681353 GTCCTGGTGGCTATGCCA-AATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATAGCT
* *
79681406 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
79681442 ACTTCGTCAC
Statistics
Matches: 84, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
53 56 0.67
54 28 0.33
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATAGCT
Found at i:79681437 original size:32 final size:27
Alignment explanation
Indices: 79681302--79681441 Score: 180
Period size: 27 Copynumber: 5.2 Consensus size: 27
79681292 AGGAAGCGTC
*
79681302 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGAT
*
79681329 CTGGTGGCTCTGCCACATATAGCTG-T
1 CTGGTGGCTCTGCCACATATATCTGAT
* *
79681355 CCTGGTGGCTATGCCAAAT-TATCTGAT
1 -CTGGTGGCTCTGCCACATATATCTGAT
*
79681382 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
79681409 CTGGTGGCTCTGCCACA-ATATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTG-AT
79681436 CTGGTG
1 CTGGTG
79681442 ACTTCGTCAC
Statistics
Matches: 99, Mismatches: 9, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
26 29 0.29
27 69 0.70
28 1 0.01
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:79682966 original size:42 final size:42
Alignment explanation
Indices: 79682857--79682967 Score: 118
Period size: 42 Copynumber: 2.6 Consensus size: 42
79682847 TGAGATTACG
* * ** *
79682857 TGTAAGACCACATTTGAGATATGGCATCAGTATGAGATTTCG
1 TGTAAGACCATATTTGGGATATGGCATCAGTATGAGATCCCA
* **
79682899 TGTAAGATCATAGCTGGGCAT-TGGCATC-GATATGAGATCCCA
1 TGTAAGACCATATTTGGG-ATATGGCATCAG-TATGAGATCCCA
79682941 TGTAAGACCATATTTGGGATATGGCAT
1 TGTAAGACCATATTTGGGATATGGCAT
79682968 TGGTATGGTA
Statistics
Matches: 55, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
41 3 0.05
42 50 0.91
43 2 0.04
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATATTTGGGATATGGCATCAGTATGAGATCCCA
Found at i:79683703 original size:15 final size:15
Alignment explanation
Indices: 79683679--79683712 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
79683669 GTAATTGATG
79683679 TGTGGATGACTTGGT
1 TGTGGATGACTTGGT
*
79683694 TGTGGTTGACTTGGT
1 TGTGGATGACTTGGT
79683709 TGTG
1 TGTG
79683713 TGTATATGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.09, C:0.06, G:0.41, T:0.44
Consensus pattern (15 bp):
TGTGGATGACTTGGT
Found at i:79689309 original size:78 final size:78
Alignment explanation
Indices: 79689172--79689322 Score: 173
Period size: 78 Copynumber: 1.9 Consensus size: 78
79689162 TAGAAGGTAA
* * * * *
79689172 AAGGGAGAAATAAAAATTTTGGGGGGATTTTGATTTTTGGGAGTAAAATGGAGAGGGG-AAGTAA
1 AAGGGAGAAATAAAAATTTTGGAGGGATTTTGAATTTGGGGAGTAAAAGGGAGAGGGGAAACTAA
79689236 AGATTTTTTAGGTT
66 A-ATTTTTTAGGTT
* * * *
79689250 AAGGGGGAAATAAATA-TTTGTGAGGGATTTTGAATTTGGGGGGTAAAAGGG-GGGAGGGAAACT
1 AAGGGAGAAATAAAAATTTTG-GAGGGATTTTGAATTTGGGGAGTAAAAGGGAGAG-GGGAAACT
79689313 AAAATTTTTT
64 AAAATTTTTT
79689323 TGAAGAGATG
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
77 6 0.10
78 49 0.80
79 6 0.10
ACGTcount: A:0.34, C:0.01, G:0.34, T:0.30
Consensus pattern (78 bp):
AAGGGAGAAATAAAAATTTTGGAGGGATTTTGAATTTGGGGAGTAAAAGGGAGAGGGGAAACTAA
AATTTTTTAGGTT
Found at i:79693251 original size:55 final size:55
Alignment explanation
Indices: 79693190--79693300 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
79693180 TCACATATAC
79693190 ATAGTTCGCCATCCATTCAGGATTTAGGTATGCCACATTATGAACATCACAAGTG
1 ATAGTTCGCCATCCATTCAGGATTTAGGTATGCCACATTATGAACATCACAAGTG
79693245 ATAGTTCGCCATCCATTCAGGATTTAGGTATGCCACATTATGAACATCACAAGTG
1 ATAGTTCGCCATCCATTCAGGATTTAGGTATGCCACATTATGAACATCACAAGTG
79693300 A
1 A
79693301 ATAAATCCAT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.29
Consensus pattern (55 bp):
ATAGTTCGCCATCCATTCAGGATTTAGGTATGCCACATTATGAACATCACAAGTG
Found at i:79693972 original size:233 final size:232
Alignment explanation
Indices: 79693539--79693981 Score: 515
Period size: 233 Copynumber: 1.9 Consensus size: 232
79693529 TCTCTTTTCA
* * *
79693539 TATTACAATTCGATCACGTAATACCGCTTAGTATTAGTTAAACATTTGACAACTAAATGAGCAAT
1 TATTACAATTCGACCACGTAATACCGCTTAGTATTAGTTAAACATTAGACAACTAAATGAGCAAC
*** **
79693604 ATTTGCTTCCATTTTGCTTTGTGTGCAAAAACCATTTGAGAATAAAAATACAAAGTACATTAATT
66 ATTTGCTTCCATTTTGCTTTGCAAGCAAAAACCACATGAGAATAAAAATACAAAGTA-ATTAATT
** * * * * *
79693669 GTAATTAATGAATTTTTATTAATCAATCTGTTCAAAAAAATTACAAGTTTACAAACGAATATATT
130 GTAATTAATGAATTTTTAGCAATCAATCTGTTAAAAAAAATTAAAAGTGTACAAACGAAAATACT
79693734 ACACTTAAG-GCACCAAATCGAAATTTTTTTTCTTTTTG
195 ACACTT-AGTGCACCAAATCGAAATTTTTTTTCTTTTTG
* *
79693772 TATTACAA-TCTGACCACGTAATACCAGC-TAGTATTAGTTAAACATTAGACAAC-CAGTGAGCA
1 TATTACAATTC-GACCACGTAATACC-GCTTAGTATTAGTTAAACATTAGACAACTAAATGAGCA
* * * * **
79693834 ACATTTGCTTCCATTTTTCTTTGCAAGCAAAAACCACATGTGGA-CATTATACAAAGT-ATTAA-
64 ACATTTGCTTCCATTTTGCTTTGCAAGCAAAAACCACATGAGAATAAAAATACAAAGTAATTAAT
* *
79693896 TGTAATTAATGAATAATTTTAGCAATCAAAT-TGTTAAAAAAAAATTAAAAGTGTACATTGATGA
129 TGTAATTAATGAAT--TTTTAGCAATC-AATCTGTT-AAAAAAAATTAAAAGTGTACA--AACGA
79693960 AAATACTACACTTAGTGCACCA
188 AAATACTACACTTAGTGCACCA
79693982 GATCCAACAT
Statistics
Matches: 176, Mismatches: 25, Indels: 18
0.80 0.11 0.08
Matches are distributed among these distances:
228 14 0.08
229 5 0.03
230 13 0.07
231 31 0.18
232 46 0.26
233 65 0.37
234 2 0.01
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.34
Consensus pattern (232 bp):
TATTACAATTCGACCACGTAATACCGCTTAGTATTAGTTAAACATTAGACAACTAAATGAGCAAC
ATTTGCTTCCATTTTGCTTTGCAAGCAAAAACCACATGAGAATAAAAATACAAAGTAATTAATTG
TAATTAATGAATTTTTAGCAATCAATCTGTTAAAAAAAATTAAAAGTGTACAAACGAAAATACTA
CACTTAGTGCACCAAATCGAAATTTTTTTTCTTTTTG
Found at i:79695327 original size:94 final size:93
Alignment explanation
Indices: 79695235--79695572 Score: 362
Period size: 94 Copynumber: 3.6 Consensus size: 93
79695225 GCAATCTATT
* *
79695235 AGGACATTAAACATGGGGCTACATGTGTAAGACCATA-TTTCAGCTATGGCAACATGGGGAGTTT
1 AGGACATTAAACATGGGGTTACATGTGTAAGACCATAGCTT-AGCTATGGCAACATGGGGAGTTT
* * *
79695299 GTCAGGACAATAAACAATGGATAGTCTATC
65 GTCAGGACAGTAAACAATGG-TAGTCCACC
* * * * * *
79695329 AGGACCTTAAACATGAGGTTACATGTGTAAGACCATATCTTAGTTATGGCAACATGGAGAGTTCG
1 AGGACATTAAACATGGGGTTACATGTGTAAGACCATAGCTTAGCTATGGCAACATGGGGAGTTTG
* *
79695394 AT-AGGATAGTAAA-TATGGGGTAGTCCACC
66 -TCAGGACAGTAAACAAT--GGTAGTCCACC
* * * *
79695423 AGGACATTAAACATGTGGTTACATGTGTAAGACTATAGCTT-GACTATGACAACATGGGGAGTCT
1 AGGACATTAAACATGGGGTTACATGTGTAAGACCATAGCTTAG-CTATGGCAACATGGGGAGTTT
* *
79695487 ATC-GAGACAGTAAACATAAGGTAGTCCACC
65 GTCAG-GACAGTAAACA-ATGGTAGTCCACC
* * * *
79695517 AAGACATTAAATAAGGGGTTACATGTGTAAGACCATAGCTTAGCTATGGCAGCATG
1 AGGACATTAAACATGGGGTTACATGTGTAAGACCATAGCTTAGCTATGGCAACATG
79695573 TGATGACCGC
Statistics
Matches: 202, Mismatches: 32, Indels: 20
0.80 0.13 0.08
Matches are distributed among these distances:
93 5 0.02
94 190 0.94
95 6 0.03
96 1 0.00
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (93 bp):
AGGACATTAAACATGGGGTTACATGTGTAAGACCATAGCTTAGCTATGGCAACATGGGGAGTTTG
TCAGGACAGTAAACAATGGTAGTCCACC
Found at i:79700508 original size:80 final size:80
Alignment explanation
Indices: 79700419--79700721 Score: 351
Period size: 80 Copynumber: 3.8 Consensus size: 80
79700409 AATAATATCC
* * * * * *
79700419 GTTTCGAGATTGATTCCTGCCGTACAACAAGTTTACTCCAAATTTTAATTTTATTTCCAAAAACG
1 GTTTCGAGATTGATTCCTGCTGTTCAACGATTTTATTCCAAATTTTGATTTTATTTCCAAAAACG
* *
79700484 AGTAAATTC-AAATTT
66 AGTAAA-ACAAAATCT
* *
79700499 GTTTCGAGATTGATTCCTGTTGTTCAACGATTTTATTCCAAATTTTGATTTTATTTCCAAAAATG
1 GTTTCGAGATTGATTCCTGCTGTTCAACGATTTTATTCCAAATTTTGATTTTATTTCCAAAAACG
79700564 AGTAAAACAAAATCT
66 AGTAAAACAAAATCT
* * * * *
79700579 GTTAC-AGGATTGATTTCTGCTGTTCAATGATTTTATTTCGAATTTTGATTTTATTTCCAAAAAC
1 GTTTCGA-GATTGATTCCTGCTGTTCAACGATTTTATTCCAAATTTTGATTTTATTTCCAAAAAC
* * *
79700643 AAGTAAAATAAAATCC
65 GAGTAAAACAAAATCT
* * * **
79700659 GTTTTGGGATTGACTCCTATTGTTCAACGATTTTATTCCAAATTTTGATTTT-TTTGCCAAAAA
1 GTTTCGAGATTGATTCCTGCTGTTCAACGATTTTATTCCAAATTTTGATTTTATTT-CCAAAAA
79700722 TGAAAACTTA
Statistics
Matches: 189, Mismatches: 30, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
79 5 0.03
80 184 0.97
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.41
Consensus pattern (80 bp):
GTTTCGAGATTGATTCCTGCTGTTCAACGATTTTATTCCAAATTTTGATTTTATTTCCAAAAACG
AGTAAAACAAAATCT
Found at i:79707326 original size:30 final size:30
Alignment explanation
Indices: 79707292--79707354 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
79707282 ACTTAACAAG
* * *
79707292 CAAATATATCTAAAATAATAACAAAATTAA
1 CAAATACATCTAAAATAATAAAAAAAATAA
* * *
79707322 CAAATGCCTTTAAAATAATAAAAAAAATAA
1 CAAATACATCTAAAATAATAAAAAAAATAA
79707352 CAA
1 CAA
79707355 TAAAATAAGT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.63, C:0.11, G:0.02, T:0.24
Consensus pattern (30 bp):
CAAATACATCTAAAATAATAAAAAAAATAA
Found at i:79707409 original size:22 final size:22
Alignment explanation
Indices: 79707384--79707429 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
79707374 TATCCAAATA
79707384 ATAACAACAAAATAATAGCAAC
1 ATAACAACAAAATAATAGCAAC
* ** *
79707406 ATAATAGTAAAATAGTAGCAAC
1 ATAACAACAAAATAATAGCAAC
79707428 AT
1 AT
79707430 GGGGAGAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.59, C:0.13, G:0.09, T:0.20
Consensus pattern (22 bp):
ATAACAACAAAATAATAGCAAC
Found at i:79724596 original size:34 final size:34
Alignment explanation
Indices: 79724527--79724603 Score: 84
Period size: 34 Copynumber: 2.2 Consensus size: 34
79724517 GTGGTGTTGT
* *
79724527 TATATATAATATATATGCCTCTATGGTTCTGTTA
1 TATATATAATATATATGCCTCTAGGGTTCTATTA
* **
79724561 TATATATACTATATATGTGTCTAGGGATT-TATTA
1 TATATATAATATATATGCCTCTAGGG-TTCTATTA
79724595 TAATATATA
1 T-ATATATA
79724604 TGCGTTTATA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
34 27 0.75
35 9 0.25
ACGTcount: A:0.34, C:0.08, G:0.12, T:0.47
Consensus pattern (34 bp):
TATATATAATATATATGCCTCTAGGGTTCTATTA
Found at i:79727937 original size:20 final size:21
Alignment explanation
Indices: 79727903--79727956 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
79727893 TGATAATATT
*
79727903 TTATGATTA-TTTAATTAGATA
1 TTAT-ATTATTTTAATGAGATA
79727924 -TATATTATTTTAATGAGATA
1 TTATATTATTTTAATGAGATA
*
79727944 TTTTATTATTTTA
1 TTATATTATTTTA
79727957 TTATTATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 14 0.48
21 11 0.38
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TTATATTATTTTAATGAGATA
Found at i:79727962 original size:11 final size:11
Alignment explanation
Indices: 79727946--79727973 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
79727936 ATGAGATATT
79727946 TTATTATTTTA
1 TTATTATTTTA
79727957 TTATTATTTTA
1 TTATTATTTTA
79727968 TTATTA
1 TTATTA
79727974 ATTATTTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:79730022 original size:46 final size:46
Alignment explanation
Indices: 79729926--79730106 Score: 249
Period size: 46 Copynumber: 4.0 Consensus size: 46
79729916 AGTGTGCTCT
*
79729926 CTGATATGAAATGTGTAAGACCAT-GTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
79729971 CTGATATGAAATGTGTAAGACCATGGTTGGAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
**
79730017 CTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
79730063 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
79730107 TCATGTCAAA
Statistics
Matches: 122, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
45 25 0.20
46 97 0.80
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:79737702 original size:15 final size:14
Alignment explanation
Indices: 79737648--79737701 Score: 51
Period size: 15 Copynumber: 3.8 Consensus size: 14
79737638 TAACTTAATA
79737648 TTTTTTCTTTTTC-
1 TTTTTTCTTTTTCG
79737661 TTTTTT-TTTTT-G
1 TTTTTTCTTTTTCG
79737673 TTCTTCCTTCTTTTCTCG
1 TT-TT--TTCTTTT-TCG
79737691 TTTTTTCTTTT
1 TTTTTTCTTTT
79737702 CCCTATTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
12 7 0.21
13 8 0.24
15 9 0.26
16 4 0.12
17 3 0.09
18 3 0.09
ACGTcount: A:0.00, C:0.17, G:0.04, T:0.80
Consensus pattern (14 bp):
TTTTTTCTTTTTCG
Found at i:79739695 original size:22 final size:22
Alignment explanation
Indices: 79739664--79739705 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
79739654 GAATGACTCG
79739664 CCCTTGTATTTATACTAGGGCA
1 CCCTTGTATTTATACTAGGGCA
*
79739686 CCCTTTTATTTATACTAGGG
1 CCCTTGTATTTATACTAGGG
79739706 TTGCCACCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.40
Consensus pattern (22 bp):
CCCTTGTATTTATACTAGGGCA
Found at i:79739959 original size:26 final size:27
Alignment explanation
Indices: 79739894--79739960 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
79739884 TTTACTTTAG
*
79739894 TAAAATTTTGACGATTTTACCCTTCGA
1 TAAAATTTTGACAATTTTACCCTTCGA
*
79739921 TAAAATTTTGACAATTTTACCC-TCTA
1 TAAAATTTTGACAATTTTACCCTTCGA
*
79739947 TAAAATTTCGACAA
1 TAAAATTTTGACAA
79739961 AATTCGTTCA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
26 16 0.43
27 21 0.57
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.39
Consensus pattern (27 bp):
TAAAATTTTGACAATTTTACCCTTCGA
Found at i:79744030 original size:30 final size:29
Alignment explanation
Indices: 79743982--79744042 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 29
79743972 CAAGTAACTG
*
79743982 AAGCTAGTTAAATTGCACACTTAGTGCCA
1 AAGCTAGTTAAATCGCACACTTAGTGCCA
79744011 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAG-TTAAATCGCACACTTAGTGCCA
79744041 AA
1 AA
79744043 ACTTCCGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.23
30 23 0.77
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.26
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCA
Found at i:79750491 original size:21 final size:20
Alignment explanation
Indices: 79750453--79750501 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
79750443 ATATTAGTTT
*
79750453 ATAATTAATAATAATTAACC
1 ATAATTAATAATAATTAAAC
*
79750473 ATTAATTAATTAAT-CTTAAAC
1 A-TAATTAA-TAATAATTAAAC
79750494 ATAATTAA
1 ATAATTAA
79750502 CAAGTTTAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 8 0.32
21 13 0.52
22 4 0.16
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (20 bp):
ATAATTAATAATAATTAAAC
Found at i:79752168 original size:40 final size:40
Alignment explanation
Indices: 79752108--79752455 Score: 429
Period size: 40 Copynumber: 8.6 Consensus size: 40
79752098 AACCCAAGTA
* * * *
79752108 CCTTCGGGATTTAG-TCGGATATAG-CAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
79752147 CCTTCGAGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
79752187 CCTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATG
*
79752230 CCTTCGGGACTTTGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
79752270 CCTTCGGGACTTAGCCCGGATATAG-CAACTCA-CACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACT-AGCACAAATG
*
79752310 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
79752350 CCTTCGGGACATAGCCCGGGTATAG-CAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATG
* *
79752393 CCTTCGGGACTTCGCCTGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
79752433 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
79752456 CATCCGAATA
Statistics
Matches: 269, Mismatches: 24, Indels: 31
0.83 0.07 0.10
Matches are distributed among these distances:
39 15 0.06
40 179 0.67
41 3 0.01
43 70 0.26
44 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:79752231 original size:83 final size:83
Alignment explanation
Indices: 79752134--79752451 Score: 516
Period size: 83 Copynumber: 3.9 Consensus size: 83
79752124 GGATATAGCA
* * *
79752134 ACTCGCACACATGCCTTCGAGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
79752199 AGCCCGGGTATAGCAACT
66 AGCCCGGGTATAGCAACT
*
79752217 ACTCGCACAAATGCCTTCGGGACTTTGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
*
79752282 AGCCCGGATATAGC-A--
66 AGCCCGGGTATAGCAACT
* * * *
79752297 ACTCACACACATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
79752362 AGCCCGGGTATAGCAACT
66 AGCCCGGGTATAGCAACT
* *
79752380 ACTCGCACAAATGCCTTCGGGACTTCGCCTGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
79752445 AGCCCGG
66 AGCCCGG
79752452 ATATCATCCG
Statistics
Matches: 215, Mismatches: 17, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
80 73 0.34
81 1 0.00
82 1 0.00
83 140 0.65
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.22
Consensus pattern (83 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
AGCCCGGGTATAGCAACT
Found at i:79752393 original size:163 final size:163
Alignment explanation
Indices: 79752108--79752455 Score: 626
Period size: 163 Copynumber: 2.1 Consensus size: 163
79752098 AACCCAAGTA
* * *
79752108 CCTTCGGGATTTAG-TCGGATATAGCAACTCGCACACATGCCTTCGAGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCACACACATGCCTTCGAGTCTTAGCCCGGATATAG
*
79752172 TCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGG
66 TCACTAGCACAAATGCCTTCGGGACATAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGG
*
79752237 GACTTTGCCCGGATATAGTCACTAGCACAAATG
131 GACTTCGCCCGGATATAGTCACTAGCACAAATG
*
79752270 CCTTCGGGACTTAGCCCGGATATAGCAACTCACACACATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCACACACATGCCTTCGAGTCTTAGCCCGGATATAG
79752335 TCACTAGCACAAATGCCTTCGGGACATAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGG
66 TCACTAGCACAAATGCCTTCGGGACATAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGG
*
79752400 GACTTCGCCTGGATATAGTCACTAGCACAAATG
131 GACTTCGCCCGGATATAGTCACTAGCACAAATG
79752433 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
79752456 CATCCGAATA
Statistics
Matches: 178, Mismatches: 7, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
162 13 0.07
163 165 0.93
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (163 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCACACACATGCCTTCGAGTCTTAGCCCGGATATAG
TCACTAGCACAAATGCCTTCGGGACATAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGG
GACTTCGCCCGGATATAGTCACTAGCACAAATG
Found at i:79757080 original size:40 final size:39
Alignment explanation
Indices: 79757025--79757313 Score: 339
Period size: 40 Copynumber: 7.3 Consensus size: 39
79757015 ATTTGAATGA
*
79757025 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGA-TT
*
79757065 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGA-TT
*
79757105 TATCCGGGCTAAGTCCCGAAGGCATTTATG-TAGTGATT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATT
* * *
79757143 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATT
* * *
79757183 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATT
* * * *
79757223 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATT
* * * * * *
79757263 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATT
79757302 ATATCC-GGCTAA
1 -TATCCGGGCTAA
79757314 ATTCCGAAGA
Statistics
Matches: 232, Mismatches: 14, Indels: 7
0.92 0.06 0.03
Matches are distributed among these distances:
38 30 0.13
39 16 0.07
40 186 0.80
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATT
Found at i:79757233 original size:118 final size:120
Alignment explanation
Indices: 79757024--79757313 Score: 356
Period size: 118 Copynumber: 2.4 Consensus size: 120
79757014 CATTTGAATG
* * * * *
79757024 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCA
* * * *
79757089 TTTATGCTAGTGATTTTATCCGGGCTAAGTCCCGAAGGCATTTATG-TAG-TGAT
66 TTTATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGAT
*
79757142 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGC
* * *
79757206 ATTTGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
65 ATTTATGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGAT
* * * ** *
79757262 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAA
79757314 ATTCCGAAGA
Statistics
Matches: 147, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
118 92 0.63
119 16 0.11
120 39 0.27
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (120 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCA
TTTATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGAT
Found at i:79757248 original size:80 final size:79
Alignment explanation
Indices: 79757024--79757313 Score: 379
Period size: 80 Copynumber: 3.7 Consensus size: 79
79757014 CATTTGAATG
* *
79757024 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
* *
79757089 TTTATGCTAG-TGATT
65 TTTGTGCGAGTTGA-T
* *
79757104 TTATCCGGGCTAAGTCCCGAAGGCATTTATG-TAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
79757168 TTGTGCGAGTTGAT
66 TTGTGCGAGTTGAT
* * *
79757182 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTTATCCGGGCTAAGACCCGAAGGCA
*
79757247 TTTGTGCGAGTTGCT
65 TTTGTGCGAGTTGAT
* * * * * *
79757262 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATT-TATCCGGGCTAA
79757314 ATTCCGAAGA
Statistics
Matches: 189, Mismatches: 17, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
78 62 0.33
79 20 0.11
80 107 0.57
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TTGTGCGAGTTGAT
Found at i:79765012 original size:52 final size:53
Alignment explanation
Indices: 79764933--79765043 Score: 167
Period size: 56 Copynumber: 2.1 Consensus size: 53
79764923 TGAAAGGCTG
79764933 GGGC-AAACTGTCATGAAAATGTTGTGTTAAT-G-GAATAAAA-AAGAAGCAT
1 GGGCAAAACTGTCATGAAAATGTTGTGTTAATAGAGAATAAAATAAGAAGCAT
79764982 GGGCAAAACATGTCATGAAACATGTTGTGTTAATAGAAGAATAAAATAAGAAGCAT
1 GGGCAAAAC-TGTCATGAAA-ATGTTGTGTTAATAG-AGAATAAAATAAGAAGCAT
79765038 GGGCAA
1 GGGCAA
79765044 TAAACTAATA
Statistics
Matches: 55, Mismatches: 0, Indels: 7
0.89 0.00 0.11
Matches are distributed among these distances:
49 4 0.07
50 4 0.07
51 10 0.18
52 13 0.24
53 1 0.02
55 8 0.15
56 15 0.27
ACGTcount: A:0.44, C:0.09, G:0.24, T:0.23
Consensus pattern (53 bp):
GGGCAAAACTGTCATGAAAATGTTGTGTTAATAGAGAATAAAATAAGAAGCAT
Found at i:79766474 original size:48 final size:47
Alignment explanation
Indices: 79766421--79766577 Score: 226
Period size: 47 Copynumber: 3.3 Consensus size: 47
79766411 AGTGATATGT
79766421 ATATATCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGC
1 ATATAT-GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGC
* *
79766469 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGC
* * *
79766516 ATATATGGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGT
1 ATATAT-GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGC
*
79766564 ATAAATGTGATAAG
1 ATATATGTGATAAG
79766578 TCCCGAAGGG
Statistics
Matches: 101, Mismatches: 6, Indels: 5
0.90 0.05 0.04
Matches are distributed among these distances:
46 1 0.01
47 51 0.50
48 49 0.49
ACGTcount: A:0.34, C:0.10, G:0.30, T:0.26
Consensus pattern (47 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGC
Found at i:79766584 original size:48 final size:48
Alignment explanation
Indices: 79766418--79766577 Score: 227
Period size: 48 Copynumber: 3.4 Consensus size: 48
79766408 TATAGTGATA
*
79766418 TGTATATATCGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAACA
1 TGTATATATCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGGAA-G
* * *
79766466 TGCATATAT-GAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATATCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGGAAG
* *
79766513 TGTATATATGGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAG
1 TGTATATATCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGGAAG
*
79766561 TGTATAAAT-GTGATAAG
1 TGTATATATCGTGATAAG
79766578 TCCCGAAGGG
Statistics
Matches: 101, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
47 48 0.48
48 53 0.52
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (48 bp):
TGTATATATCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGGAAG
Found at i:79769173 original size:56 final size:56
Alignment explanation
Indices: 79769087--79769206 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
79769077 ACAAGGGATG
79769087 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
79769143 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
79769199 ATGGGCAA
1 ATGGGCAA
79769207 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:79770626 original size:47 final size:48
Alignment explanation
Indices: 79770414--79770757 Score: 478
Period size: 47 Copynumber: 7.6 Consensus size: 48
79770404 TATTTGAATA
79770414 AATGTG-A-AGTGTATATATTGTGA-AAGGCCGAATGGCCAATGTGATG
1 AATGTGAACAGTGTATATA-TGTGATAAGGCCGAATGGCCAATGTGATG
* *
79770460 AA--TGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
79770505 -ATGTGAACAGTG----TATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
79770548 AATGT-AACA-TGTAT-TATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
79770593 AATGTGAACAGTGTATATA-GTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
79770640 AATGTGAACA----ATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
79770684 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
79770731 GATGTGGA-AGTGTATAAATGTGATAAG
1 AATGTGAACAGTGTATATATGTGATAAG
79770758 TCCCGAAGGG
Statistics
Matches: 272, Mismatches: 8, Indels: 35
0.86 0.03 0.11
Matches are distributed among these distances:
42 2 0.01
43 40 0.15
44 47 0.17
45 66 0.24
46 13 0.05
47 102 0.38
48 2 0.01
ACGTcount: A:0.34, C:0.10, G:0.30, T:0.27
Consensus pattern (48 bp):
AATGTGAACAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:79770690 original size:91 final size:92
Alignment explanation
Indices: 79770414--79770736 Score: 472
Period size: 91 Copynumber: 3.6 Consensus size: 92
79770404 TATTTGAATA
79770414 AATGTG-AAGTGTATATATTGTGA-AAGGCCGAATGGCCAATGTGATGAA--TGAACATGTGTAT
1 AATGTGAAAGTGTATATA-TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA--TGTAT
*
79770475 GTGTGATAAGGCCGAATGGCCAATGTGATG
63 ATGTGATAAGGCCGAATGGCCAATGTGATG
79770505 -ATGTGAACAGTG----TATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-AACATGTATTA
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTA-TA
79770564 TGTGATAAGGCCGAATGGCCAATGTGATG
64 TGTGATAAGGCCGAATGGCCAATGTGATG
*
79770593 AATGTGAACAGTGTATATA-GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-ATATAT
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATAT
*
79770656 GAGATAAGGCCGAATGGCCAATGTGATG
65 GTGATAAGGCCGAATGGCCAATGTGATG
*
79770684 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
79770737 GAAGTGTATA
Statistics
Matches: 215, Mismatches: 4, Indels: 26
0.88 0.02 0.11
Matches are distributed among these distances:
87 9 0.04
88 57 0.27
89 16 0.07
90 16 0.07
91 72 0.33
92 39 0.18
93 6 0.03
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (92 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATG
TGATAAGGCCGAATGGCCAATGTGATG
Found at i:79773406 original size:40 final size:40
Alignment explanation
Indices: 79773294--79773646 Score: 526
Period size: 40 Copynumber: 9.1 Consensus size: 40
79773284 AGGTCTCGAC
79773294 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
79773333 GATGTATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
79773372 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
79773412 GATGTATCC-GGCTAAGT-CCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
79773450 GATGTATCC-GGCTAAGT-CCGAAGAGCATTCATGCTA--
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
79773486 -ATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
79773525 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * ** * *
79773565 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * *
79773605 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
79773645 GA
1 GA
79773647 CGTGTATTCG
Statistics
Matches: 291, Mismatches: 16, Indels: 13
0.91 0.05 0.04
Matches are distributed among these distances:
35 8 0.03
36 8 0.03
37 19 0.07
38 57 0.20
39 51 0.18
40 148 0.51
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:79773517 original size:153 final size:157
Alignment explanation
Indices: 79773294--79773641 Score: 528
Period size: 153 Copynumber: 2.2 Consensus size: 157
79773284 AGGTCTCGAC
79773294 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTA--GATGTATCCGGGCTAAGTCCGAAGA
*
79773358 GCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCG-
64 GCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGT
**
79773422 GCT-AAGTCCGAAGAGCATTCATGCTAGT
129 GCTAAACCCCGAAGAGCATTCATGCTAGT
79773450 GATGTATCC-GGCTAAGT-CCGAAGAGCATTCATGCTA-ATGTATCCGGGCTAAGTCCCGAAGAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGATGTATCCGGGCTAAGT-CCGAAGAG
* *
79773512 CATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTG
65 CATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGTG
* *
79773577 CTAAACCCCGAAGAGCATTCGTGCTGGT
130 CTAAACCCCGAAGAGCATTCATGCTAGT
* * * *
79773605 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
79773642 GGTGACGTGT
Statistics
Matches: 175, Mismatches: 11, Indels: 11
0.89 0.06 0.06
Matches are distributed among these distances:
152 17 0.10
153 68 0.39
154 3 0.02
155 47 0.27
156 19 0.11
157 21 0.12
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (157 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGATGTATCCGGGCTAAGTCCGAAGAGC
ATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGTGC
TAAACCCCGAAGAGCATTCATGCTAGT
Found at i:79776262 original size:47 final size:47
Alignment explanation
Indices: 79776202--79776593 Score: 576
Period size: 47 Copynumber: 8.3 Consensus size: 47
79776192 TGAAAGTGTA
79776202 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
79776249 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
79776296 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
79776343 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* * *
79776390 CATATATGAGATAAGGTCGAATGGCCAATGTGATGAATGTGAA-AGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
79776437 TATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 --TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* * *
79776486 CATATATGAGATAAGGCCGAATGACCAATGTGATGAATGTGAA-AGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
* * *
79776533 TATATATGTGATAAGGCCGAATGGCCAATGTGGTGGATGTGGAA-GTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATG
79776580 TATA-ATGTGATAAG
1 TATATATGTGATAAG
79776594 TCCCGAAGGG
Statistics
Matches: 320, Mismatches: 19, Indels: 13
0.91 0.05 0.04
Matches are distributed among these distances:
46 12 0.04
47 262 0.82
48 3 0.01
49 42 0.13
50 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
Found at i:79779302 original size:39 final size:40
Alignment explanation
Indices: 79779084--79779314 Score: 315
Period size: 40 Copynumber: 5.8 Consensus size: 40
79779074 CATTTGAATG
* * *
79779084 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
* * * * *
79779124 TTATCCGGGCTAAGTCCCTAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
*
79779164 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
79779204 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
79779244 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* *
79779284 ATA-CCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
79779315 TTGTGGTTAT
Statistics
Matches: 180, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 26 0.14
40 151 0.84
41 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:79785656 original size:40 final size:40
Alignment explanation
Indices: 79785576--79786086 Score: 642
Period size: 40 Copynumber: 12.6 Consensus size: 40
79785566 AACCCAAGTA
* * * *
79785576 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCGCACATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
*
79785615 CCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
79785655 CCTTCGGGACTTAGCCC-GAGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-TATAGCAACTA---GCACAAATG
* *
79785698 CCTTCTGGACTTCGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
* * *
79785738 CCTTCGGGACTTAGCCCAGATATAGCAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
*
79785778 CCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
*
79785818 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTA---GCACAAATG
*
79785861 CCTTCGGGACTTCGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
* * *
79785901 CCTTCGGGACTTAGCCCAGATATAGCAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
*
79785941 CCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
*
79785981 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTA---GCACAAATG
* *
79786024 CCTTCGGGACTTCGCCTGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
79786064 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
79786087 CATCCGAATA
Statistics
Matches: 413, Mismatches: 36, Indels: 45
0.84 0.07 0.09
Matches are distributed among these distances:
39 19 0.05
40 282 0.68
41 3 0.01
43 104 0.25
44 5 0.01
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
Found at i:79785856 original size:123 final size:120
Alignment explanation
Indices: 79785576--79786086 Score: 642
Period size: 123 Copynumber: 4.2 Consensus size: 120
79785566 AACCCAAGTA
* * * * *
79785576 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCGCACATGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
79785639 GTCACTAGCACAAATGCCTTCGGGACTTAGCCC-GAGTATAGCAACTACTCGCACAAATG
65 GTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGA-TATAGCAACTA---GCACAAATG
* * *
79785698 CCTTCTGGACTTCGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
* * *
79785763 -CAACTCGCACACATGCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATG
66 TC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
* *
79785818 CCTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGCCTTCGGGACTTCGCCCGGAT
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGCCTTCGGGACTTAGCCCGGAT
* * *
79785882 ATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATAGCAACTCGCACACATG
62 ATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
* *
79785941 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
* *
79786006 -CAACTACTCGCACAAATGCCTTCGGGACTTCGCCTGGATATAGTC-ACTAGCACAAATG
66 TC-ACTA---GCACAAATGCCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
79786064 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
79786087 CATCCGAATA
Statistics
Matches: 340, Mismatches: 32, Indels: 33
0.84 0.08 0.08
Matches are distributed among these distances:
119 2 0.01
120 71 0.21
122 13 0.04
123 247 0.73
124 7 0.02
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (120 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
Found at i:79785863 original size:163 final size:163
Alignment explanation
Indices: 79785576--79786086 Score: 952
Period size: 163 Copynumber: 3.1 Consensus size: 163
79785566 AACCCAAGTA
* * *
79785576 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCGCACATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCAGATATAGCAACTCGCACACATGCCTTCGGGTCTTAGCCCGGATATAG
* *
79785640 TCACTAGCACAAATGCCTTCGGGACTTAGCCCGAGTATAGCAACTACTCGCACAAATGCCTTCTG
66 TCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGG
79785705 GACTTCGCCCGGATATAGTCACTAGCACAAATG
131 GACTTCGCCCGGATATAGTCACTAGCACAAATG
79785738 CCTTCGGGACTTAGCCCAGATATAGCAACTCGCACACATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCAGATATAGCAACTCGCACACATGCCTTCGGGTCTTAGCCCGGATATAG
79785803 TCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGG
66 TCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGG
79785868 GACTTCGCCCGGATATAGTCACTAGCACAAATG
131 GACTTCGCCCGGATATAGTCACTAGCACAAATG
79785901 CCTTCGGGACTTAGCCCAGATATAGCAACTCGCACACATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCAGATATAGCAACTCGCACACATGCCTTCGGGTCTTAGCCCGGATATAG
79785966 TCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGG
66 TCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGG
*
79786031 GACTTCGCCTGGATATAGTCACTAGCACAAATG
131 GACTTCGCCCGGATATAGTCACTAGCACAAATG
*
79786064 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCAGATAT
79786087 CATCCGAATA
Statistics
Matches: 341, Mismatches: 7, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
162 13 0.04
163 328 0.96
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (163 bp):
CCTTCGGGACTTAGCCCAGATATAGCAACTCGCACACATGCCTTCGGGTCTTAGCCCGGATATAG
TCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGG
GACTTCGCCCGGATATAGTCACTAGCACAAATG
Found at i:79789361 original size:17 final size:17
Alignment explanation
Indices: 79789339--79789375 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
79789329 AGAAACATAG
79789339 ATGTAATCATTGGAATA
1 ATGTAATCATTGGAATA
79789356 ATGTAATCATTGGAATA
1 ATGTAATCATTGGAATA
79789373 ATG
1 ATG
79789376 ATACATTGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.41, C:0.05, G:0.19, T:0.35
Consensus pattern (17 bp):
ATGTAATCATTGGAATA
Found at i:79790837 original size:31 final size:31
Alignment explanation
Indices: 79790740--79790843 Score: 95
Period size: 31 Copynumber: 3.4 Consensus size: 31
79790730 TATTAAATTA
* * *
79790740 AATTTAATATTTATCTATATAGTAATTTATT
1 AATTTAATATTTATCTAGATAATATTTTATT
* * * **
79790771 AATTCAATATTTATAT-GA-GATATTAAACTT
1 AATTTAATATTTATCTAGATAATATTTTA-TT
*
79790801 AAATTTAATAATTATCTAGATAATATTTTATT
1 -AATTTAATATTTATCTAGATAATATTTTATT
79790833 AATTTAATATT
1 AATTTAATATT
79790844 AATGTGATTA
Statistics
Matches: 54, Mismatches: 15, Indels: 8
0.70 0.19 0.10
Matches are distributed among these distances:
29 4 0.07
30 3 0.06
31 37 0.69
32 4 0.07
33 6 0.11
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (31 bp):
AATTTAATATTTATCTAGATAATATTTTATT
Found at i:79799006 original size:39 final size:39
Alignment explanation
Indices: 79798962--79799091 Score: 233
Period size: 39 Copynumber: 3.3 Consensus size: 39
79798952 ATTATATTAT
* * *
79798962 CAGCACAAAGCCTGTGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
79799001 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
79799040 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
79799079 CAGCACGAAGCCT
1 CAGCACGAAGCCT
79799092 ACGGACCCTA
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 88 1.00
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.20
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:79799109 original size:39 final size:39
Alignment explanation
Indices: 79798962--79799152 Score: 201
Period size: 39 Copynumber: 4.9 Consensus size: 39
79798952 ATTATATTAT
* * *
79798962 CAGCACAAAGCCTGTGGGACTTTAA-CCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGAC-CTAAGCCCGGATACATTTC
* *
79799001 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACCTAAGCCCGGATACATTTC
* *
79799040 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACCTAAGCCCGGATACATTTC
* * * *
79799079 CAGCACGAAGCCTAC-GGACCCTAAGTCCGGATATAATTC
1 CAGCACGAAGCCTGCGGGA-CCTAAGCCCGGATACATTTC
* *
79799118 CAGCAC-ATAGCCTG-TGGACCCTAAGTCCGGATACA
1 CAGCACGA-AGCCTGCGGGA-CCTAAGCCCGGATACA
79799153 CATCAAATAT
Statistics
Matches: 137, Mismatches: 11, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
38 7 0.05
39 130 0.95
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.20
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACCTAAGCCCGGATACATTTC
Found at i:79799109 original size:78 final size:77
Alignment explanation
Indices: 79798962--79799131 Score: 225
Period size: 78 Copynumber: 2.2 Consensus size: 77
79798952 ATTATATTAT
* * * *
79798962 CAGCACAAAGCCTGTGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
1 CAGCAC-AAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTACGGGACCTAAGC
*
79799027 CCGGATACATTTC
65 CCGGATACAATTC
*
79799040 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTAC-GGACCCTAAG
1 CAGCAC-AAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTACGGGA-CCTAAG
* *
79799104 TCCGGATATAATTC
64 CCCGGATACAATTC
79799118 CAGCACATAGCCTG
1 CAGCACA-AGCCTG
79799132 TGGACCCTAA
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
77 4 0.05
78 77 0.95
ACGTcount: A:0.26, C:0.31, G:0.23, T:0.20
Consensus pattern (77 bp):
CAGCACAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTACGGGACCTAAGCC
CGGATACAATTC
Found at i:79805410 original size:39 final size:39
Alignment explanation
Indices: 79805366--79805536 Score: 218
Period size: 39 Copynumber: 4.4 Consensus size: 39
79805356 ATTATATTAT
79805366 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
**
79805405 CAGCACAAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
* *
79805444 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
* * ** * * *
79805483 CAGCACGAAGCTTGC-GGACCCTAAGTCCGGATATAATTC
1 CAGCACAAAGCCTGCGGGACTTTAA-CCCGGATACATTTC
*
79805522 CAGCACATAGCCTGC
1 CAGCACAAAGCCTGC
79805537 AGACCCTAAG
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
38 6 0.05
39 111 0.95
ACGTcount: A:0.26, C:0.31, G:0.23, T:0.20
Consensus pattern (39 bp):
CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
Found at i:79805542 original size:39 final size:39
Alignment explanation
Indices: 79805431--79805556 Score: 139
Period size: 39 Copynumber: 3.2 Consensus size: 39
79805421 GGACTTTGGC
* * * * *
79805431 CCGGATACATTTCCAGCACGAAGCCTGCGGGA-CTTTAGC
1 CCGGATACAATTCCAGCACGAAGCCTGC-AGACCCTAAGT
* * *
79805470 CCGGATACATTTCCAGCACGAAGCTTGCGGACCCTAAGT
1 CCGGATACAATTCCAGCACGAAGCCTGCAGACCCTAAGT
*
79805509 CCGGATATAATTCCAGCAC-ATAGCCTGCAGACCCTAAGT
1 CCGGATACAATTCCAGCACGA-AGCCTGCAGACCCTAAGT
79805548 CCGGATACA
1 CCGGATACA
79805557 CATCAAATAT
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
38 4 0.05
39 72 0.95
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (39 bp):
CCGGATACAATTCCAGCACGAAGCCTGCAGACCCTAAGT
Found at i:79805552 original size:78 final size:78
Alignment explanation
Indices: 79805366--79805556 Score: 183
Period size: 78 Copynumber: 2.4 Consensus size: 78
79805356 ATTATATTAT
* * * * **
79805366 CAGCACAAAGCCTGCGGGACTTTAA-CCCGGATACATTTCCAGCACAAAGCCTGCGGGACTTTGG
1 CAGCACGAAGCCTGCGAGAC-CTAAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGACCTAAG
*
79805430 CCCGGATACATTTC
65 CCCGGATACAATTC
* * * * *
79805444 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCTTGC-GGACCCTAAG
1 CAGCACGAAGCCTGCGAGACCTAAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGA-CCTAAG
* *
79805508 TCCGGATATAATTC
65 CCCGGATACAATTC
*
79805522 CAGCAC-ATAGCCTGC-AGACCCTAAGTCCGGATACA
1 CAGCACGA-AGCCTGCGAGA-CCTAAGCCCGGATACA
79805557 CATCAAATAT
Statistics
Matches: 95, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
77 9 0.09
78 86 0.91
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.19
Consensus pattern (78 bp):
CAGCACGAAGCCTGCGAGACCTAAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGACCTAAGC
CCGGATACAATTC
Found at i:79807973 original size:23 final size:22
Alignment explanation
Indices: 79807947--79807990 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
79807937 ATGGTTTTAA
*
79807947 ATTTTTAAAAAATATAAAATAAT
1 ATTTTCAAAAAATA-AAAATAAT
*
79807970 ATTTTCCAAAAATAAAAATAA
1 ATTTTCAAAAAATAAAAATAA
79807991 AAATTAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (22 bp):
ATTTTCAAAAAATAAAAATAAT
Done.