Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 246 of 290
Found at i:79810175 original size:18 final size:19
Alignment explanation
Indices: 79810141--79810177 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
79810131 ATTAGGTATG
79810141 TATTTTTATCAGTTTTTAAT
1 TATTTTTAT-AGTTTTTAAT
79810161 TATTTTTAT-GTTTTTAA
1 TATTTTTATAGTTTTTAA
79810178 GATTGTTGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
20 9 0.53
ACGTcount: A:0.24, C:0.03, G:0.05, T:0.68
Consensus pattern (19 bp):
TATTTTTATAGTTTTTAAT
Found at i:79811202 original size:19 final size:20
Alignment explanation
Indices: 79811180--79811257 Score: 65
Period size: 19 Copynumber: 4.0 Consensus size: 20
79811170 TATGTTACAC
79811180 GGATGAATTACTG-TTATAT
1 GGATGAATTACTGTTTATAT
* * *
79811199 GGATGAAGTACTGTTTAAAC
1 GGATGAATTACTGTTTATAT
* *
79811219 AGATGAGTTACTG-TTATCA-
1 GGATGAATTACTGTTTAT-AT
*
79811238 -AATGAATTACTGTTTATAT
1 GGATGAATTACTGTTTATAT
79811257 G
1 G
79811258 ATTGAGAGTA
Statistics
Matches: 45, Mismatches: 9, Indels: 9
0.71 0.14 0.14
Matches are distributed among these distances:
18 11 0.24
19 19 0.42
20 15 0.33
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (20 bp):
GGATGAATTACTGTTTATAT
Found at i:79812963 original size:32 final size:32
Alignment explanation
Indices: 79812922--79812984 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
79812912 TTTTTAGTTT
79812922 TTATTATTAATAATTACTTTTTCAGAGTTTTG
1 TTATTATTAATAATTACTTTTTCAGAGTTTTG
* *
79812954 TTATTATTAATAATTTCTTTTTCATAGTTTT
1 TTATTATTAATAATTACTTTTTCAGAGTTTT
79812985 ACTCCTTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.27, C:0.06, G:0.06, T:0.60
Consensus pattern (32 bp):
TTATTATTAATAATTACTTTTTCAGAGTTTTG
Found at i:79817058 original size:50 final size:50
Alignment explanation
Indices: 79816983--79817128 Score: 283
Period size: 50 Copynumber: 2.9 Consensus size: 50
79816973 TAGATCATTG
*
79816983 CGTCACAAACCAAAAGGTCGACCCACATTAACTCAGATACGTGACATTTA
1 CGTCACAAACCAAAAGGTCGACCCACATCAACTCAGATACGTGACATTTA
79817033 CGTCACAAACCAAAAGGTCGACCCACATCAACTCAGATACGTGACATTTA
1 CGTCACAAACCAAAAGGTCGACCCACATCAACTCAGATACGTGACATTTA
79817083 CGTCACAAACCAAAAGGTCGACCCACATCAACTCAGATACGTGACA
1 CGTCACAAACCAAAAGGTCGACCCACATCAACTCAGATACGTGACA
79817129 ACATGGATAT
Statistics
Matches: 95, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
50 95 1.00
ACGTcount: A:0.38, C:0.30, G:0.14, T:0.17
Consensus pattern (50 bp):
CGTCACAAACCAAAAGGTCGACCCACATCAACTCAGATACGTGACATTTA
Found at i:79817273 original size:20 final size:20
Alignment explanation
Indices: 79817250--79817290 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
79817240 CTCATTAACA
79817250 GATTTATTAATATTTTAATC
1 GATTTATTAATATTTTAATC
* *
79817270 GATTTATTTATTTTTTAATC
1 GATTTATTAATATTTTAATC
79817290 G
1 G
79817291 CAATTCATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.29, C:0.05, G:0.07, T:0.59
Consensus pattern (20 bp):
GATTTATTAATATTTTAATC
Found at i:79821812 original size:12 final size:12
Alignment explanation
Indices: 79821795--79821826 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
79821785 CTGCTTCTGT
*
79821795 AATCTGAATTTG
1 AATCTGAATATG
79821807 AATCTGAATATG
1 AATCTGAATATG
79821819 AATCTGAA
1 AATCTGAA
79821827 ACTGTATCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.41, C:0.09, G:0.16, T:0.34
Consensus pattern (12 bp):
AATCTGAATATG
Found at i:79822435 original size:19 final size:20
Alignment explanation
Indices: 79822411--79822452 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
79822401 TATATTTTTA
*
79822411 TTTTATGT-ATTTTTCTAAT
1 TTTTATGTAATATTTCTAAT
*
79822430 TTTTATTTAATATTTCTAAT
1 TTTTATGTAATATTTCTAAT
79822450 TTT
1 TTT
79822453 ATTTTTTGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.69
Consensus pattern (20 bp):
TTTTATGTAATATTTCTAAT
Found at i:79823876 original size:3 final size:3
Alignment explanation
Indices: 79823863--79823932 Score: 58
Period size: 3 Copynumber: 24.7 Consensus size: 3
79823853 AGAGTCCTAG
* * * * * *
79823863 GAA GTA GAA GAA G-A GAA AAA GAA GAA TAA G-A TAA GAA -AT GGA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
79823908 GAA GAA GAA GAA -AA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GA
79823933 GAAAATTGAA
Statistics
Matches: 51, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
2 6 0.12
3 45 0.88
ACGTcount: A:0.64, C:0.00, G:0.30, T:0.06
Consensus pattern (3 bp):
GAA
Found at i:79823887 original size:14 final size:14
Alignment explanation
Indices: 79823868--79823937 Score: 56
Period size: 14 Copynumber: 5.0 Consensus size: 14
79823858 CCTAGGAAGT
79823868 AGAAGAAGAGAAAA
1 AGAAGAAGAGAAAA
* *
79823882 AGAAGAATA-AGATA
1 AGAAGAAGAGA-AAA
* *
79823896 AGAA-ATGGAGAAGA
1 AGAAGA-AGAGAAAA
79823910 AGAAGAAGA-AAAGA
1 AGAAGAAGAGAAA-A
79823924 AGAAGAAGAGAAAA
1 AGAAGAAGAGAAAA
79823938 TTGAAGGAGC
Statistics
Matches: 43, Mismatches: 7, Indels: 12
0.69 0.11 0.19
Matches are distributed among these distances:
13 4 0.09
14 34 0.79
15 5 0.12
ACGTcount: A:0.67, C:0.00, G:0.29, T:0.04
Consensus pattern (14 bp):
AGAAGAAGAGAAAA
Found at i:79823923 original size:11 final size:11
Alignment explanation
Indices: 79823868--79823935 Score: 54
Period size: 11 Copynumber: 6.4 Consensus size: 11
79823858 CCTAGGAAGT
79823868 AGAAGAAGAGAA
1 AGAAGAAGA-AA
79823880 A-AAGAAGAATA
1 AGAAGAAGAA-A
*
79823891 AG-ATAAGAAA
1 AGAAGAAGAAA
* *
79823901 TGGAGAAG--A
1 AGAAGAAGAAA
79823910 AGAAGAAGAAA
1 AGAAGAAGAAA
*
79823921 AGAAGAAGAAG
1 AGAAGAAGAAA
79823932 AGAA
1 AGAA
79823936 AATTGAAGGA
Statistics
Matches: 45, Mismatches: 6, Indels: 11
0.73 0.10 0.18
Matches are distributed among these distances:
9 7 0.16
10 3 0.07
11 34 0.76
12 1 0.02
ACGTcount: A:0.66, C:0.00, G:0.29, T:0.04
Consensus pattern (11 bp):
AGAAGAAGAAA
Found at i:79825057 original size:21 final size:21
Alignment explanation
Indices: 79825031--79825073 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
79825021 CAATGTGGCA
* *
79825031 AGTTAATTGGCCACATCAGCT
1 AGTTAACTGCCCACATCAGCT
*
79825052 AGTTAACTGCCCACGTCAGCT
1 AGTTAACTGCCCACATCAGCT
79825073 A
1 A
79825074 TCCCGTTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (21 bp):
AGTTAACTGCCCACATCAGCT
Found at i:79832051 original size:31 final size:30
Alignment explanation
Indices: 79831994--79832051 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
79831984 TTTTCGAGCC
* * *
79831994 TAGGGTCAAATTTGTAATTTTGCAAAGGTT
1 TAGGGGCAAAATTGTAATTTTCCAAAGGTT
79832024 TAGGGGCAAAATTGTAATTTTTCCAAAG
1 TAGGGGCAAAATTGTAA-TTTTCCAAAG
79832052 TTTGAGTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 15 0.62
31 9 0.38
ACGTcount: A:0.33, C:0.09, G:0.22, T:0.36
Consensus pattern (30 bp):
TAGGGGCAAAATTGTAATTTTCCAAAGGTT
Found at i:79832873 original size:47 final size:46
Alignment explanation
Indices: 79832815--79833274 Score: 281
Period size: 47 Copynumber: 9.5 Consensus size: 46
79832805 GAATTGGCAC
* *
79832815 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGT
1 TAAGACAAGGATACCATGTAAGACCATGTTAGG-ACATGGCATTTGG
*
79832862 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTAGG-ACATGGCATTTGG
* * * ** *
79832909 TAAGATAAAGATATCATGTAAGACCATGCCAAGG-CATGGCATTGATAAGTTC
1 TAAGACAAGGATACCATGTAAGACCATG-TTAGGACATGGCATT--T--G--G
* * * * *
79832961 TATAGGGCAAGGAGATCATGTAATG-CCATGTCAAGACATGGCATTGATGAG
1 TA-A-GACAAGGATACCATGTAA-GACCATGTTAGGACATGGCATT--TG-G
* * * *
79833012 TTACTATAAGGCAAAGG-TCCCATGTAAGACCATGTCAAGACATGGCA-TTGG
1 ------TAAGAC-AAGGATACCATGTAAGACCATGTTAGGACATGGCATTTGG
* * * * * *
79833063 AAAGGCAAGGATCCCGTGTAAGACCATGTTAAGACATGGCA-TCGG
1 TAAGACAAGGATACCATGTAAGACCATGTTAGGACATGGCATTTGG
* * * * *
79833108 CATTGATTAAGGACT-CCATGTAAGACACA--TTAAGATATGGCA-TTGG
1 TA-AGA-CAAGGA-TACCATGTAAGAC-CATGTTAGGACATGGCATTTGG
*
79833154 CACTAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 ---TAAGACAAGGATACCATGTAAGACCATGTTAGG-ACATGGCATTTGG
*
79833204 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTAGG-ACATGGCATTTGG
* *
79833251 TAAGATAAGGATATCATGTAAGAC
1 TAAGACAAGGATACCATGTAAGAC
79833275 ATGCCAAGGC
Statistics
Matches: 342, Mismatches: 39, Indels: 64
0.77 0.09 0.14
Matches are distributed among these distances:
44 4 0.01
45 37 0.11
46 28 0.08
47 171 0.50
48 11 0.03
49 8 0.02
50 5 0.01
51 1 0.00
52 5 0.01
53 3 0.01
54 33 0.10
55 29 0.08
56 5 0.01
57 2 0.01
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.25
Consensus pattern (46 bp):
TAAGACAAGGATACCATGTAAGACCATGTTAGGACATGGCATTTGG
Found at i:79833038 original size:55 final size:53
Alignment explanation
Indices: 79832916--79833061 Score: 179
Period size: 55 Copynumber: 2.7 Consensus size: 53
79832906 TGGTAAGATA
* * * *
79832916 AAGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAGGGC
1 AAGAGATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGC
*
79832969 AAGGAGATCATGTAATG-CCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AA-GAGATCATGTAA-GACCATGTCAAGACATGGCATTGATAAGTT-CTATAAGGC
*
79833024 AA-AGGTCCCATGTAAGACCATGTCAAGACATGGCATTG
1 AAGAGAT--CATGTAAGACCATGTCAAGACATGGCATTG
79833062 GAAAGGCAAG
Statistics
Matches: 81, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
53 5 0.06
54 37 0.46
55 39 0.48
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (53 bp):
AAGAGATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:79836629 original size:11 final size:11
Alignment explanation
Indices: 79836613--79836637 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
79836603 ATCTGTGTTC
79836613 TTTATTTTATT
1 TTTATTTTATT
79836624 TTTATTTTATT
1 TTTATTTTATT
79836635 TTT
1 TTT
79836638 TTCACAGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:79837240 original size:13 final size:13
Alignment explanation
Indices: 79837222--79837246 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79837212 ATTTTTTTAA
79837222 TTTTAATTAATAT
1 TTTTAATTAATAT
79837235 TTTTAATTAATA
1 TTTTAATTAATA
79837247 ACTCATTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TTTTAATTAATAT
Found at i:79837318 original size:30 final size:28
Alignment explanation
Indices: 79837253--79837320 Score: 82
Period size: 32 Copynumber: 2.3 Consensus size: 28
79837243 AATAACTCAT
79837253 TTATATATATAAATTATTTTTAACATAA
1 TTATATATATAAATTATTTTTAACATAA
* *
79837281 TGATATATATAAAATATATTTTTATTATATAA
1 TTATATATAT-AAAT-TATTTTTA--ACATAA
79837313 TTATATAT
1 TTATATAT
79837321 TTATCATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
28 9 0.27
29 4 0.12
30 8 0.24
32 12 0.36
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (28 bp):
TTATATATATAAATTATTTTTAACATAA
Found at i:79843078 original size:46 final size:46
Alignment explanation
Indices: 79843026--79843198 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
79843016 TGGTTGAGCA
79843026 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
79843072 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
79843117 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
79843165 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
79843199 AGGGCGGTTA
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:79843182 original size:93 final size:93
Alignment explanation
Indices: 79843023--79843193 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
79843013 GGATGGTTGA
* ** *
79843023 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
79843088 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
79843116 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
79843181 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
79843194 ACTTAAGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:79859942 original size:46 final size:49
Alignment explanation
Indices: 79859836--79859951 Score: 139
Period size: 50 Copynumber: 2.4 Consensus size: 49
79859826 AGTCTTCGAC
** * * *
79859836 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGCCTCCAAAGCCA-ATATATATCTAAT
* *
79859886 ATGGGCTTACATGGCTCATTCCTGCCTCCAAAGCC-ATATA-A-CTGAT
1 ATGGACTTACATGGCTCATTCCTGCCTCCAAAGCCAATATATATCTAAT
79859932 ATGGACTTACATGGCTCATT
1 ATGGACTTACATGGCTCATT
79859952 TCTGTCCTAT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 23 0.40
47 1 0.02
48 5 0.09
50 29 0.50
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (49 bp):
ATGGACTTACATGGCTCATTCCTGCCTCCAAAGCCAATATATATCTAAT
Found at i:79863680 original size:37 final size:37
Alignment explanation
Indices: 79863621--79863729 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
79863611 AGCTCAGATG
* *
79863621 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
79863658 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
79863695 TAATCTCCACACGTAGTCATCGGGTCTTAGCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
79863730 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:79863932 original size:50 final size:50
Alignment explanation
Indices: 79863878--79864284 Score: 580
Period size: 50 Copynumber: 8.2 Consensus size: 50
79863868 CATCGCCTAC
*
79863878 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
*
79863928 ATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCATATAT
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATATAT
* *
79863978 ATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTC--ATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
*
79864026 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
* * * *
79864076 ACA-TTGACCATT-GACCATTCGGCTTTACCACATATGCATATCTC--ATAC
1 ATATTTCA-CATTAG-CCATTCGGCTTTACCACATATACATATCTCATATAT
79864124 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
* * *
79864174 ATATTTCACATTAACCATTCAGCTTTACCAAATATACATATCTCATATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATATAT
* *
79864226 ATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTC--ATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
79864274 ATATTTCACAT
1 ATATTTCACAT
79864285 ATCTCATACA
Statistics
Matches: 319, Mismatches: 26, Indels: 26
0.86 0.07 0.07
Matches are distributed among these distances:
48 96 0.30
49 9 0.03
50 167 0.52
51 1 0.00
52 46 0.14
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.36
Consensus pattern (50 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
Found at i:79864073 original size:98 final size:99
Alignment explanation
Indices: 79863878--79864284 Score: 576
Period size: 98 Copynumber: 4.1 Consensus size: 99
79863868 CATCGCCTAC
* *
79863878 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT-GA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACATTAG-
*
79863942 CCATTCGGCTTTACCACATATGCATATCTCATATAT
64 CCATTCGGCTTTACCACATATACATATCTCATATAT
* *
79863978 ATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTC-ATACATATTTCACACTAGCC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTAGCC
79864042 ATTCGGCTTTACCACATATACATATCTCATATAT
66 ATTCGGCTTTACCACATATACATATCTCATATAT
* * *
79864076 ACA-TTGACCATT-GACCATTCGGCTTTACCACATATGCATATCTC-ATACATATTTCACATTAG
1 ATATTTCA-CATTAG-CCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTAG
79864138 CCATTCGGCTTTACCACATATACATATCTCATATAT
64 CCATTCGGCTTTACCACATATACATATCTCATATAT
* * * * *
79864174 ATATTTCACATTAACCATTCAGCTTTACCAAATATACATATCTCATATATATATATTTCGCATTA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A-ATACATATTTCACATTA
*
79864239 GCCATTCGGCTTTACCACATATACATATCTC--ATAC
63 GCCATTCGGCTTTACCACATATACATATCTCATATAT
79864274 ATATTTCACAT
1 ATATTTCACAT
79864285 ATCTCATACA
Statistics
Matches: 279, Mismatches: 19, Indels: 18
0.88 0.06 0.06
Matches are distributed among these distances:
97 3 0.01
98 170 0.61
99 4 0.01
100 56 0.20
102 46 0.16
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.36
Consensus pattern (99 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTAGCC
ATTCGGCTTTACCACATATACATATCTCATATAT
Found at i:79864178 original size:148 final size:146
Alignment explanation
Indices: 79863875--79864284 Score: 635
Period size: 148 Copynumber: 2.8 Consensus size: 146
79863865 ACACATCGCC
79863875 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
* *
79863940 GACCATTCGGCTTTACCACATATGCATATCTCATATATATATTTCGCATTAGCCATTCGGCTTTA
66 GACCATTCGGCTTTACCACATATGCATATCTC--ATACATATTTCACATTAGCCATTCGGCTTTA
79864005 CCACATATACATATCTCA
129 CCACATATACATATCTCA
* *
79864023 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATACA-TTGACCAT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCA-CAT
79864087 TGACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
65 TGACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
79864152 CACATATACATATCTCATA
130 CACATATACATATCTC--A
* * * * * *
79864171 TATATATTTCACATTAACCATTCAGCTTTACCAAATATACATATCTCATATATATATATTTCGCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATATATATATTTCACA
*
79864236 TT-AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
64 TTGA-CCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACAT
79864285 ATCTCATACA
Statistics
Matches: 242, Mismatches: 13, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
146 46 0.19
147 3 0.01
148 134 0.55
149 1 0.00
150 56 0.23
151 2 0.01
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.36
Consensus pattern (146 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
GACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
ACATATACATATCTCA
Found at i:79864275 original size:11 final size:11
Alignment explanation
Indices: 79864259--79864297 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
79864249 TTTACCACAT
79864259 ATACATATCTC
1 ATACATATCTC
*
79864270 ATACATATTTC
1 ATACATATCTC
79864281 --ACATATCTC
1 ATACATATCTC
79864290 ATACATAT
1 ATACATAT
79864298 TTCACATTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
9 8 0.33
11 16 0.67
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.38
Consensus pattern (11 bp):
ATACATATCTC
Found at i:79864286 original size:20 final size:20
Alignment explanation
Indices: 79864261--79864304 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
79864251 TACCACATAT
79864261 ACATATCTCATACATATTTC
1 ACATATCTCATACATATTTC
79864281 ACATATCTCATACATATTTC
1 ACATATCTCATACATATTTC
79864301 ACAT
1 ACAT
79864305 TAGCCATTCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (20 bp):
ACATATCTCATACATATTTC
Found at i:79864311 original size:68 final size:68
Alignment explanation
Indices: 79864226--79864352 Score: 245
Period size: 68 Copynumber: 1.9 Consensus size: 68
79864216 TCATATATAT
*
79864226 ATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATATCTCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATATCTCA
79864291 TAC
66 TAC
79864294 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
79864353 TAGCCATTCG
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
68 58 1.00
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (68 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATATCTCA
TAC
Found at i:79864334 original size:48 final size:48
Alignment explanation
Indices: 79864281--79864400 Score: 240
Period size: 48 Copynumber: 2.5 Consensus size: 48
79864271 TACATATTTC
79864281 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
79864329 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
79864377 ACATATCTCATACATATTTCACAT
1 ACATATCTCATACATATTTCACAT
79864401 ATCTCATACA
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 72 1.00
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.36
Consensus pattern (48 bp):
ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
Found at i:79864386 original size:116 final size:116
Alignment explanation
Indices: 79864159--79864503 Score: 582
Period size: 116 Copynumber: 2.9 Consensus size: 116
79864149 TACCACATAT
* * * *
79864159 ACATATCTCATATATATATTTCACATTAACCATTCAGCTTTACCAAATATACATATCTCATATAT
1 ACATATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----AT
* *
79864224 ATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTC
60 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTC
79864281 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
79864346 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTC
66 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTC
79864397 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
79864462 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
66 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
79864504 GCATCAATTT
Statistics
Matches: 217, Mismatches: 6, Indels: 6
0.95 0.03 0.03
Matches are distributed among these distances:
116 164 0.76
120 44 0.20
122 9 0.04
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.37
Consensus pattern (116 bp):
ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTC
Found at i:79864391 original size:11 final size:11
Alignment explanation
Indices: 79864375--79864413 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
79864365 TTTACCACAT
79864375 ATACATATCTC
1 ATACATATCTC
*
79864386 ATACATATTTC
1 ATACATATCTC
79864397 --ACATATCTC
1 ATACATATCTC
79864406 ATACATAT
1 ATACATAT
79864414 TTCACATTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
9 8 0.33
11 16 0.67
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.38
Consensus pattern (11 bp):
ATACATATCTC
Found at i:79864401 original size:68 final size:68
Alignment explanation
Indices: 79864329--79864468 Score: 280
Period size: 68 Copynumber: 2.1 Consensus size: 68
79864319 TACCACATAT
79864329 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
79864394 TTC
66 TTC
79864397 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
79864462 TTC
66 TTC
79864465 ACAT
1 ACAT
79864469 TAGCCATTCG
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 72 1.00
ACGTcount: A:0.33, C:0.26, G:0.04, T:0.36
Consensus pattern (68 bp):
ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
TTC
Found at i:79864402 original size:20 final size:20
Alignment explanation
Indices: 79864377--79864420 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
79864367 TACCACATAT
79864377 ACATATCTCATACATATTTC
1 ACATATCTCATACATATTTC
79864397 ACATATCTCATACATATTTC
1 ACATATCTCATACATATTTC
79864417 ACAT
1 ACAT
79864421 TAGCCATTCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (20 bp):
ACATATCTCATACATATTTC
Found at i:79864450 original size:48 final size:48
Alignment explanation
Indices: 79864397--79864503 Score: 214
Period size: 48 Copynumber: 2.2 Consensus size: 48
79864387 TACATATTTC
79864397 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
79864445 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
79864493 ACATATCTCAT
1 ACATATCTCAT
79864504 GCATCAATTT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 59 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
Found at i:79872317 original size:30 final size:30
Alignment explanation
Indices: 79872283--79872343 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
79872273 TCCTTAACTC
79872283 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
79872313 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
79872343 A
1 A
79872344 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:79880198 original size:18 final size:18
Alignment explanation
Indices: 79880175--79880210 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
79880165 AGTGATAATA
79880175 ATGATTATACTAAAAATT
1 ATGATTATACTAAAAATT
*
79880193 ATGATTATATTAAAAATT
1 ATGATTATACTAAAAATT
79880211 GATACAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.50, C:0.03, G:0.06, T:0.42
Consensus pattern (18 bp):
ATGATTATACTAAAAATT
Found at i:79886482 original size:3 final size:3
Alignment explanation
Indices: 79886470--79886523 Score: 58
Period size: 3 Copynumber: 18.3 Consensus size: 3
79886460 GTTTGAAAAA
* *
79886470 AAG AAA AAG AAG AAG AAG -AG AAG TAGG AAG -AG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG -AAG AAG AAG AAG AAG AAG AAG
*
79886514 AAG GAG AAG A
1 AAG AAG AAG A
79886524 GGAAAAATGG
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
2 4 0.10
3 36 0.86
4 2 0.05
ACGTcount: A:0.63, C:0.00, G:0.35, T:0.02
Consensus pattern (3 bp):
AAG
Found at i:79886504 original size:23 final size:23
Alignment explanation
Indices: 79886477--79886524 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
79886467 AAAAAGAAAA
*
79886477 AGAAGAAGAAG-AGAAGTAGGAAG
1 AGAAGAAGAAGAAGAAGGA-GAAG
79886500 AGAAGAAGAAGAAGAAGGAGAAG
1 AGAAGAAGAAGAAGAAGGAGAAG
79886523 AG
1 AG
79886525 GAAAAATGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.58, C:0.00, G:0.40, T:0.02
Consensus pattern (23 bp):
AGAAGAAGAAGAAGAAGGAGAAG
Found at i:79887177 original size:61 final size:59
Alignment explanation
Indices: 79887072--79887212 Score: 201
Period size: 61 Copynumber: 2.4 Consensus size: 59
79887062 TGTTGTTGTT
* * *
79887072 TACAAATTGCTTAACAGTTGGTATACATGGCTGTTGGTTGGAAAAGATAAAAAAATTGATA
1 TACAAATTGCTTAACAGTTGGTATACATGGCTGCTAGTTAGAAAAGAT--AAAAATTGATA
* * * *
79887133 TACAAATTGCTTAACAGTTTGTATACATGGCTGCTAGTTAGAAAAGATAACAGTTGGTA
1 TACAAATTGCTTAACAGTTGGTATACATGGCTGCTAGTTAGAAAAGATAAAAATTGATA
79887192 TACAAATTGCTTAACAGTTGG
1 TACAAATTGCTTAACAGTTGG
79887213 ATAACAAATA
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
59 28 0.39
61 44 0.61
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.32
Consensus pattern (59 bp):
TACAAATTGCTTAACAGTTGGTATACATGGCTGCTAGTTAGAAAAGATAAAAATTGATA
Found at i:79887676 original size:21 final size:21
Alignment explanation
Indices: 79887643--79887691 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
79887633 GTTAGGGCAC
* *
79887643 CTTGTTGAGTTGGGGTACCCT
1 CTTGCTGACTTGGGGTACCCT
*
79887664 CTTGCTGACTTGGGGTAGCCT
1 CTTGCTGACTTGGGGTACCCT
*
79887685 GTTGCTG
1 CTTGCTG
79887692 GGTTCGAACA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.08, C:0.20, G:0.35, T:0.37
Consensus pattern (21 bp):
CTTGCTGACTTGGGGTACCCT
Found at i:79888437 original size:42 final size:42
Alignment explanation
Indices: 79888359--79888494 Score: 191
Period size: 42 Copynumber: 3.2 Consensus size: 42
79888349 AAAAAAAAAC
*
79888359 TCATTGCATGCATATTAAAAAATAGTCAATAGCTTTCCAACAA
1 TCATTGCATGCATATT-AAAAATAGTCAATAGCTTTCCAATAA
* * *
79888402 TCATTGCATGCATATTTAAAATAGTCAACAACTTTCCAATAA
1 TCATTGCATGCATATTAAAAATAGTCAATAGCTTTCCAATAA
** *
79888444 TCATTGCATATATATTAAAAAAAGTCAATAGCTTTCCAATAA
1 TCATTGCATGCATATTAAAAATAGTCAATAGCTTTCCAATAA
*
79888486 TCACTGCAT
1 TCATTGCAT
79888495 ATGATCAGCA
Statistics
Matches: 82, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
42 66 0.80
43 16 0.20
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.32
Consensus pattern (42 bp):
TCATTGCATGCATATTAAAAATAGTCAATAGCTTTCCAATAA
Found at i:79890162 original size:15 final size:15
Alignment explanation
Indices: 79890141--79890185 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
79890131 ATACATCATT
*
79890141 ATCACTACCAGGCAC
1 ATCACTACCAGACAC
* *
79890156 TTCACTACTAGACAC
1 ATCACTACCAGACAC
*
79890171 ATCACTACCAAACAC
1 ATCACTACCAGACAC
79890186 GTTTTCTTCA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.38, C:0.38, G:0.07, T:0.18
Consensus pattern (15 bp):
ATCACTACCAGACAC
Found at i:79890679 original size:64 final size:63
Alignment explanation
Indices: 79890470--79890861 Score: 527
Period size: 64 Copynumber: 6.2 Consensus size: 63
79890460 TAGGAGCTTG
* * * * * ** *
79890470 GATATAAACAATGACAGATATACACAATAAACATCAGTTTAATAATGTA-TAATTTAATGTCA
1 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATGCATTCATACAATGGCA
* * * **
79890532 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTAATAATGTA-TAATTTAATGGCA
1 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATGCATTCATACAATGGCA
* * * *
79890594 GATACAAACAATGACAAATATACATAATAAACATCAATTTGATAATGACATTCATACAATGGCA
1 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATG-CATTCATACAATGGCA
* *
79890658 GATACAAACAATGGCAGATATACACAATAAACATCAATTTGATAATGAAATTCATACAATGGCA
1 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATG-CATTCATACAATGGCA
* * *
79890722 GATACAAACAATGGCATATATACACAATAAAGATCAGTTTGATAATGGCATTCATACAATGACA
1 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAAT-GCATTCATACAATGGCA
*
79890786 GATACAAACAATGGCAGATATACACAATAAAGATCAGTTTGATAATGGCATTCATACAATGGCA
1 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAAT-GCATTCATACAATGGCA
79890850 GATACAAACAAT
1 GATACAAACAAT
79890862 AAACATCAAA
Statistics
Matches: 304, Mismatches: 23, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
62 101 0.33
63 1 0.00
64 201 0.66
65 1 0.00
ACGTcount: A:0.47, C:0.15, G:0.12, T:0.26
Consensus pattern (63 bp):
GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATGCATTCATACAATGGCA
Found at i:79890769 original size:34 final size:34
Alignment explanation
Indices: 79890731--79890836 Score: 100
Period size: 34 Copynumber: 3.2 Consensus size: 34
79890721 AGATACAAAC
79890731 AATGGCATATATACACAATAAAGATCAGTTTGAT
1 AATGGCATATATACACAATAAAGATCAGTTTGAT
* * *
79890765 AATGGCAT-TCAT--ACAATGACAGATACA----AAC
1 AATGGCATAT-ATACACAAT-AAAGAT-CAGTTTGAT
*
79890795 AATGGCAGATATACACAATAAAGATCAGTTTGAT
1 AATGGCATATATACACAATAAAGATCAGTTTGAT
79890829 AATGGCAT
1 AATGGCAT
79890837 TCATACAATG
Statistics
Matches: 54, Mismatches: 8, Indels: 20
0.66 0.10 0.24
Matches are distributed among these distances:
30 12 0.22
31 6 0.11
32 10 0.19
33 6 0.11
34 20 0.37
ACGTcount: A:0.44, C:0.14, G:0.16, T:0.25
Consensus pattern (34 bp):
AATGGCATATATACACAATAAAGATCAGTTTGAT
Found at i:79891066 original size:30 final size:29
Alignment explanation
Indices: 79891001--79891080 Score: 88
Period size: 30 Copynumber: 2.7 Consensus size: 29
79890991 CGAAATAACC
*
79891001 CTAAATCGAAATCAAAATCAAATTCTAAT
1 CTAAATCGAAATCAAAATCAAATTCAAAT
* * * *
79891030 CTTAAATTGAGATCGAAATCAAAATTGAAAT
1 C-TAAATCGAAATCAAAATC-AAATTCAAAT
*
79891061 CTAAATCTAAATCAAAATCA
1 CTAAATCGAAATCAAAATCA
79891081 GTGAGTGTTT
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
29 2 0.05
30 29 0.73
31 9 0.22
ACGTcount: A:0.51, C:0.15, G:0.06, T:0.28
Consensus pattern (29 bp):
CTAAATCGAAATCAAAATCAAATTCAAAT
Found at i:79891078 original size:18 final size:18
Alignment explanation
Indices: 79890976--79891079 Score: 54
Period size: 18 Copynumber: 5.9 Consensus size: 18
79890966 CATTAATAAC
79890976 AAAT-AAAATCAAAATCG
1 AAATCAAAATCAAAATCG
** *
79890993 AAAT--AACCCTAAATCG
1 AAATCAAAATCAAAATCG
*
79891009 AAATCAAAATCAAATTC-
1 AAATCAAAATCAAAATCG
* * ** *
79891026 TAATCTTAAATTGAGATCG
1 AAATC-AAAATCAAAATCG
** *
79891045 AAATCAAAATTGAAATCT
1 AAATCAAAATCAAAATCG
*
79891063 AAATCTAAATCAAAATC
1 AAATCAAAATCAAAATC
79891080 AGTGAGTGTT
Statistics
Matches: 63, Mismatches: 20, Indels: 7
0.70 0.22 0.08
Matches are distributed among these distances:
16 13 0.21
17 8 0.13
18 38 0.60
19 4 0.06
ACGTcount: A:0.54, C:0.15, G:0.06, T:0.25
Consensus pattern (18 bp):
AAATCAAAATCAAAATCG
Found at i:79891671 original size:31 final size:29
Alignment explanation
Indices: 79891632--79891704 Score: 83
Period size: 31 Copynumber: 2.4 Consensus size: 29
79891622 GGTAATTGTT
*
79891632 AGTTAGTGACTATTTTGTCACTTTTTTATA
1 AGTTAGTGACTATTTTGTCACTTTTTGA-A
** *
79891662 ACGTTAGTGACCGTTTTGTTACTTTTTGAA
1 A-GTTAGTGACTATTTTGTCACTTTTTGAA
79891692 AGTTAAGTGACTA
1 AGTT-AGTGACTA
79891705 AAATGAAACC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
29 3 0.09
30 9 0.26
31 23 0.66
ACGTcount: A:0.25, C:0.11, G:0.18, T:0.47
Consensus pattern (29 bp):
AGTTAGTGACTATTTTGTCACTTTTTGAA
Found at i:79892558 original size:31 final size:31
Alignment explanation
Indices: 79892523--79892583 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
79892513 GTATACTTTA
*
79892523 ATTTAATTAATTATAGTATTT-GTACTTTTTG
1 ATTTAATCAATTATAGT-TTTCGTACTTTTTG
*
79892554 ATTTAATCAATTTTAGTTTTCGTACTTTTT
1 ATTTAATCAATTATAGTTTTCGTACTTTTT
79892584 AAAATGTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 3 0.11
31 24 0.89
ACGTcount: A:0.26, C:0.07, G:0.08, T:0.59
Consensus pattern (31 bp):
ATTTAATCAATTATAGTTTTCGTACTTTTTG
Found at i:79902947 original size:20 final size:20
Alignment explanation
Indices: 79902894--79902950 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
79902884 TCTCCGAACA
*
79902894 ATGGTTTTCAGTAAAAAAAC
1 ATGGTTATCAGTAAAAAAAC
* *
79902914 A---TAAACAG-AAAAAAAC
1 ATGGTTATCAGTAAAAAAAC
79902930 ATGGTTATCAGTAAAAAAAC
1 ATGGTTATCAGTAAAAAAAC
79902950 A
1 A
79902951 ATAAAGAATA
Statistics
Matches: 28, Mismatches: 5, Indels: 8
0.68 0.12 0.20
Matches are distributed among these distances:
16 9 0.32
17 4 0.14
19 5 0.18
20 10 0.36
ACGTcount: A:0.56, C:0.11, G:0.12, T:0.21
Consensus pattern (20 bp):
ATGGTTATCAGTAAAAAAAC
Found at i:79915244 original size:40 final size:40
Alignment explanation
Indices: 79915186--79915423 Score: 404
Period size: 40 Copynumber: 6.0 Consensus size: 40
79915176 AAAAAAAAAA
* * *
79915186 TATAACCGGGTTATGTCCCGAAGGCATTCGTGCAGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
79915226 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
79915266 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
79915306 TATAACCGGGTTAAGTCCCAAAGGTATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
79915346 TATAACCGGGTTAAGTCTCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
79915386 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
79915424 GTTACATCCG
Statistics
Matches: 187, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 187 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:79915450 original size:120 final size:120
Alignment explanation
Indices: 79915201--79915453 Score: 380
Period size: 120 Copynumber: 2.1 Consensus size: 120
79915191 CCGGGTTATG
*
79915201 TCCCGAAGGCATTCGTGCAGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TCCCGAAGGTATTCGTGCAGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* * * *
79915266 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAG
66 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTACAACCGAGTCAAA
* * * *
79915321 TCCCAAAGGTATTCGTGCGGGTTATTATAACCGGGTTAAGTCTCGAAGGCATTCGTGCGGGTTAT
1 TCCCGAAGGTATTCGTGCAGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* * * *
79915386 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTGTTACATCCGAGTCAAA
66 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTACAACCGAGTCAAA
*
79915441 TTCCGAAGGTATT
1 TCCCGAAGGTATT
79915454 TATGTTTGGA
Statistics
Matches: 118, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
120 118 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (120 bp):
TCCCGAAGGTATTCGTGCAGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTACAACCGAGTCAAA
Found at i:79923228 original size:40 final size:40
Alignment explanation
Indices: 79923164--79923320 Score: 271
Period size: 40 Copynumber: 4.0 Consensus size: 40
79923154 AGAAAAAAAA
*
79923164 TATAACCGGGTT-AGTCCCGAAGGCATTCGTGCGGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
79923203 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
79923243 TATAACCGGGTTAAGTCCCGAAGGCATTCATGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
79923283 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
79923321 GTTACATCCG
Statistics
Matches: 112, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 12 0.11
40 100 0.89
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:79923344 original size:80 final size:80
Alignment explanation
Indices: 79923178--79923346 Score: 239
Period size: 80 Copynumber: 2.1 Consensus size: 80
79923168 ACCGGGTTAG
*
79923178 TCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TCCCGAAGGCATTCATGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* * * *
79923243 TATAACCGGGTTAAG
66 TACAACCGAGTCAAA
* * * *
79923258 TCCCGAAGGCATTCATGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTGT
1 TCCCGAAGGCATTCATGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
79923323 TACATCCGAGTCAAA
66 TACAACCGAGTCAAA
*
79923338 TTCCGAAGG
1 TCCCGAAGG
79923347 TATTTATGTT
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
80 78 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCCGAAGGCATTCATGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
TACAACCGAGTCAAA
Found at i:79926525 original size:26 final size:26
Alignment explanation
Indices: 79926489--79926541 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
79926479 TATATTAAAT
79926489 GACTAATTACATAACCAAAACATATA
1 GACTAATTACATAACCAAAACATATA
79926515 GACTAATTACATAACCAAAACATATA
1 GACTAATTACATAACCAAAACATATA
79926541 G
1 G
79926542 GCTTTCATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.53, C:0.19, G:0.06, T:0.23
Consensus pattern (26 bp):
GACTAATTACATAACCAAAACATATA
Found at i:79929403 original size:20 final size:21
Alignment explanation
Indices: 79929368--79929406 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
79929358 GAGCAGAATT
*
79929368 TATTTCCGTTGGAGCGAAATA
1 TATTTCCGTTGAAGCGAAATA
79929389 TATTT-CGTTGAAGCGAAA
1 TATTTCCGTTGAAGCGAAA
79929407 CTAGGCAGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.33
Consensus pattern (21 bp):
TATTTCCGTTGAAGCGAAATA
Found at i:79931753 original size:120 final size:120
Alignment explanation
Indices: 79931536--79931784 Score: 437
Period size: 120 Copynumber: 2.1 Consensus size: 120
79931526 TCACAAGCAC
*
79931536 ATTAATAGAAAACTGTATAATTTATCCGGATGAAGTATATATTAATAGAAAACTGTATAATTTAC
1 ATTAACAGAAAACTGTATAATTTATCCGGATGAAGTATATATTAATAGAAAACTGTATAATTTAC
*
79931601 CCGGGTAAAGTATGTATTAATAGAAAACTGTATAATTTACCCAGG-TAAAGTATGT
66 CCGGGTAAAGTATGTATTAACAGAAAACTGTATAATTTACCC-GGATAAAGTATGT
*
79931656 ATTAACAGAAAACTGTATAATTTATCCGGATGAAGTATGTATTAATAGAAAACTGTATAATTTAC
1 ATTAACAGAAAACTGTATAATTTATCCGGATGAAGTATATATTAATAGAAAACTGTATAATTTAC
* *
79931721 CCGGGTAAAGTATGTATTAACAGAAAATTGTATAATTTACCCGGATGAAGTATGT
66 CCGGGTAAAGTATGTATTAACAGAAAACTGTATAATTTACCCGGATAAAGTATGT
79931776 ATTAACAGA
1 ATTAACAGA
79931785 TATACTTAAG
Statistics
Matches: 123, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
119 2 0.02
120 121 0.98
ACGTcount: A:0.41, C:0.10, G:0.16, T:0.33
Consensus pattern (120 bp):
ATTAACAGAAAACTGTATAATTTATCCGGATGAAGTATATATTAATAGAAAACTGTATAATTTAC
CCGGGTAAAGTATGTATTAACAGAAAACTGTATAATTTACCCGGATAAAGTATGT
Found at i:79931784 original size:40 final size:40
Alignment explanation
Indices: 79931536--79931780 Score: 375
Period size: 40 Copynumber: 6.1 Consensus size: 40
79931526 TCACAAGCAC
* * *
79931536 ATTAATAGAAAACTGTATAATTTATCCGGATGAAGTATAT
1 ATTAATAGAAAACTGTATAATTTACCCGGATAAAGTATGT
*
79931576 ATTAATAGAAAACTGTATAATTTACCCGGGTAAAGTATGT
1 ATTAATAGAAAACTGTATAATTTACCCGGATAAAGTATGT
79931616 ATTAATAGAAAACTGTATAATTTACCCAGG-TAAAGTATGT
1 ATTAATAGAAAACTGTATAATTTACCC-GGATAAAGTATGT
* * *
79931656 ATTAACAGAAAACTGTATAATTTATCCGGATGAAGTATGT
1 ATTAATAGAAAACTGTATAATTTACCCGGATAAAGTATGT
*
79931696 ATTAATAGAAAACTGTATAATTTACCCGGGTAAAGTATGT
1 ATTAATAGAAAACTGTATAATTTACCCGGATAAAGTATGT
* * *
79931736 ATTAACAGAAAATTGTATAATTTACCCGGATGAAGTATGT
1 ATTAATAGAAAACTGTATAATTTACCCGGATAAAGTATGT
79931776 ATTAA
1 ATTAA
79931781 CAGATATACT
Statistics
Matches: 188, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 2 0.01
40 184 0.98
41 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.16, T:0.33
Consensus pattern (40 bp):
ATTAATAGAAAACTGTATAATTTACCCGGATAAAGTATGT
Found at i:79931811 original size:18 final size:18
Alignment explanation
Indices: 79931788--79931822 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
79931778 TAACAGATAT
*
79931788 ACTTAAGATCTAGTTGGC
1 ACTTAAAATCTAGTTGGC
79931806 ACTTAAAATCTAGTTGG
1 ACTTAAAATCTAGTTGG
79931823 ACTACCACGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.34
Consensus pattern (18 bp):
ACTTAAAATCTAGTTGGC
Found at i:79932187 original size:14 final size:14
Alignment explanation
Indices: 79932164--79932202 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
79932154 TCTAGAAAAG
*
79932164 TAAATCATTTTCCA
1 TAAATTATTTTCCA
79932178 TAAATTATTTTCCA
1 TAAATTATTTTCCA
* *
79932192 GAAAATATTTT
1 TAAATTATTTT
79932203 ACTGGCAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.38, C:0.13, G:0.03, T:0.46
Consensus pattern (14 bp):
TAAATTATTTTCCA
Found at i:79932351 original size:17 final size:17
Alignment explanation
Indices: 79932329--79932361 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
79932319 ATAATGAATG
79932329 TTATTAAATTATATTTT
1 TTATTAAATTATATTTT
79932346 TTATTAAATTATATTT
1 TTATTAAATTATATTT
79932362 AATAATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTATTAAATTATATTTT
Found at i:79932635 original size:16 final size:16
Alignment explanation
Indices: 79932611--79932678 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
79932601 ATTACTTATC
*
79932611 ACAGTTCTATTCCATT
1 ACAGCTCTATTCCATT
79932627 ACAGCTCTATTCCATT
1 ACAGCTCTATTCCATT
*
79932643 ACAGCTCTATTCAATT
1 ACAGCTCTATTCCATT
*
79932659 ACAGCCCTATTCCATT
1 ACAGCTCTATTCCATT
79932675 ACAG
1 ACAG
79932679 TGAACCAAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.28, C:0.29, G:0.07, T:0.35
Consensus pattern (16 bp):
ACAGCTCTATTCCATT
Found at i:79936778 original size:29 final size:31
Alignment explanation
Indices: 79936727--79936806 Score: 92
Period size: 30 Copynumber: 2.5 Consensus size: 31
79936717 AGTCTATATC
* *
79936727 TTTATAATTTTTAAAAGATTAAAATA-AATT
1 TTTATTATTTTTAAAAGACTAAAATATAATT
79936757 TTTATTATTTTT-AAAGACTAAAATATAATT
1 TTTATTATTTTTAAAAGACTAAAATATAATT
79936787 TTATCATTATTAATTTAAAA
1 TT-T-ATTATT--TTTAAAA
79936807 TTTTATAAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
29 12 0.29
30 17 0.40
31 1 0.02
32 6 0.14
34 3 0.07
35 3 0.07
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (31 bp):
TTTATTATTTTTAAAAGACTAAAATATAATT
Found at i:79940782 original size:45 final size:47
Alignment explanation
Indices: 79940680--79940806 Score: 158
Period size: 45 Copynumber: 2.8 Consensus size: 47
79940670 ATGTAACCCG
*
79940680 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCAGTTACAT
* * *
79940729 TC-T---CGAACTCGGACTCAACTCAACGAGTTCGGA-CA-TTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCAGTTACAT
79940770 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
79940807 TGCTCAACAT
Statistics
Matches: 68, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
41 6 0.09
42 3 0.04
45 57 0.84
48 1 0.01
49 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCAGTTACAT
Found at i:79940824 original size:45 final size:45
Alignment explanation
Indices: 79940685--79940824 Score: 139
Period size: 45 Copynumber: 3.1 Consensus size: 45
79940675 ACCCGCCATA
* *
79940685 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CAGTTACATTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCA---ACATCCT
* **
79940732 --CGAACTCGGACTCAACTCAACGAGTTCGGA--CAT-TGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-TCAACATCC-T
79940774 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATCCT
79940820 AGTGA
1 AGTGA
79940825 CATGTCACTT
Statistics
Matches: 76, Mismatches: 8, Indels: 20
0.73 0.08 0.19
Matches are distributed among these distances:
41 4 0.05
42 1 0.01
43 1 0.01
45 62 0.82
46 2 0.03
47 6 0.08
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATCCT
Found at i:79943131 original size:15 final size:15
Alignment explanation
Indices: 79943083--79943162 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
79943073 CAAAGATAAT
*
79943083 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
79943097 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
79943112 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
79943127 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
79943142 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
79943157 AAGAAA
1 AAGAAA
79943163 CCAAGATACG
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:79946190 original size:91 final size:91
Alignment explanation
Indices: 79946081--79946250 Score: 304
Period size: 91 Copynumber: 1.9 Consensus size: 91
79946071 GCCCATAAGT
* *
79946081 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
79946146 CGAGCTCGGATGCCTAGTTACATCTC
66 CGAGCTCGGATGCCTAGTTACATCTC
*
79946172 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
79946237 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
79946251 CAAACATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
91 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTC
Found at i:79946246 original size:46 final size:46
Alignment explanation
Indices: 79946073--79946246 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
79946063 TGTAACCCGC
* *
79946073 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
79946119 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* * *
79946165 ACAT--CTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
79946210 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
79946247 TGCCCAAACA
Statistics
Matches: 111, Mismatches: 8, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 31 0.28
46 69 0.62
47 5 0.05
48 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:79946265 original size:46 final size:45
Alignment explanation
Indices: 79946078--79946265 Score: 159
Period size: 46 Copynumber: 4.1 Consensus size: 45
79946068 CCCGCCCATA
* * * * *
79946078 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGCTC-GG-ATGCCCATACATCT
*
79946124 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCA--TACATCT
* * * * * *
79946171 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGCCCATACATCT
* *
79946215 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCATACAT-CT
79946261 AGTGA
1 AGTGA
79946266 CATGTCACTT
Statistics
Matches: 114, Mismatches: 19, Indels: 18
0.75 0.13 0.12
Matches are distributed among these distances:
44 11 0.10
45 33 0.29
46 66 0.58
47 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCATACATCT
Found at i:79948399 original size:43 final size:43
Alignment explanation
Indices: 79948316--79948399 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 43
79948306 AACATGTACG
* * *
79948316 GCATCCATTATGAACTTGGACCACTCAACGAGCTCGGATGCTC
1 GCATCCATAATGAACTCGGACCACTCAACGAGCTCAGATGCTC
* * *
79948359 GCATTCATAATGAACTCGGACCACTCCACGAGCTTAGATGC
1 GCATCCATAATGAACTCGGACCACTCAACGAGCTCAGATGC
79948400 CACATATATC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (43 bp):
GCATCCATAATGAACTCGGACCACTCAACGAGCTCAGATGCTC
Found at i:79950069 original size:37 final size:37
Alignment explanation
Indices: 79949926--79950071 Score: 240
Period size: 37 Copynumber: 3.9 Consensus size: 37
79949916 AGCTCAGACG
* *
79949926 AAATCTCCACACGAAGTTATCGGGTCTTACCC-AGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGA-ACA
*
79949963 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGAACA
79950000 AAATCTCCACACGTAGTCATCGGGTCTTACCCGAACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGAACA
*
79950037 AAATCTCCACATGTAGTCATCGGGTCTTACCCGAA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGAA
79950072 ATATATTTCC
Statistics
Matches: 103, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGAACA
Found at i:79950346 original size:48 final size:48
Alignment explanation
Indices: 79950217--79950401 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
79950207 GCACATCGTC
*
79950217 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
79950267 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
* *
79950315 TACATATTTCACATTAGCCATTCGGCCTTACCATATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
79950363 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
79950402 TGCATGTTCA
Statistics
Matches: 122, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
48 79 0.65
49 2 0.02
50 41 0.34
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:79950406 original size:98 final size:97
Alignment explanation
Indices: 79950217--79950400 Score: 291
Period size: 98 Copynumber: 1.9 Consensus size: 97
79950207 GCACATCGTC
* *
79950217 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCCTTACCACATATACATATCTCA-ATACATATTTCACATT
79950282 GACCATTCAGCTTTACCACATATGCATATCTCA
65 GACCATTCAGCTTTACCACATATGCATATCTCA
* *
79950315 TACATATTTCACATTAGCCATTCGGCCTTACCATATATACATATCTC-ATACATATTTCACATT-
1 TACATATTTCACACTAGCCATTCGGCCTTACCACATATACATATCTCAATACATATTTCACATTG
*
79950378 AGCCATTCGGCTTTACCACATAT
66 A-CCATTCAGCTTTACCACATAT
79950401 ATGCATGTTC
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
95 1 0.01
96 35 0.44
98 44 0.55
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCGGCCTTACCACATATACATATCTCAATACATATTTCACATTG
ACCATTCAGCTTTACCACATATGCATATCTCA
Found at i:79950450 original size:47 final size:47
Alignment explanation
Indices: 79950371--79950564 Score: 255
Period size: 47 Copynumber: 4.1 Consensus size: 47
79950361 CATACATATT
* * * * *
79950371 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* *
79950418 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
*
79950465 TCACATTGGCCATTCGGCCTTATCGC-CTATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACAC-ATATGCATGTTCACATTCA
* * * **
79950512 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
79950559 TCACAT
1 TCACAT
79950565 AAAATCCTAA
Statistics
Matches: 130, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
46 1 0.01
47 129 0.99
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
Found at i:79950496 original size:94 final size:94
Alignment explanation
Indices: 79950324--79950564 Score: 272
Period size: 94 Copynumber: 2.6 Consensus size: 94
79950314 ATACATATTT
* * * *
79950324 CACATTAGCCATTCGGCCTTA-C-CATATATACATATCTCATACATAT-TTCACATTAGCCATTC
1 CACATTGGCCATTCGGCCTTATCACACATATACACA-CTC--ACAT-TCATCACATTAGCCATTC
* *
79950386 GGCTTTACCACATATATGCATGTTCATATTCAC
62 GGCCTTACCACATATATGCATGTTCACATTCAC
* ** *
79950419 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
* * * *
79950484 TTATCGCCTATATGCATGTTCACATTCAT
66 TTACCACATATATGCATGTTCACATTCAC
* * *
79950513 CACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACAT
79950565 AAAATCCTAA
Statistics
Matches: 125, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
93 1 0.01
94 91 0.73
95 20 0.16
96 4 0.03
97 9 0.07
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.33
Consensus pattern (94 bp):
CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
TTACCACATATATGCATGTTCACATTCAC
Found at i:79959059 original size:15 final size:15
Alignment explanation
Indices: 79959015--79959060 Score: 83
Period size: 15 Copynumber: 3.1 Consensus size: 15
79959005 TATGATATTG
*
79959015 TATCTTGGATTTCTG
1 TATCTTGGATTTCTT
79959030 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
79959045 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
79959060 T
1 T
79959061 GTCCCAGACT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.13, C:0.13, G:0.15, T:0.59
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:79962048 original size:47 final size:47
Alignment explanation
Indices: 79961996--79962339 Score: 482
Period size: 47 Copynumber: 7.3 Consensus size: 47
79961986 TGTACAAGTA
* * *
79961996 TATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAA-AGTA
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
79962043 TATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
79962092 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
79962139 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
79962186 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
79962233 CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
* *
79962280 TATATATGTGATAAGG-CGAATGGCCAAT-TGATGGATGTGGAA-GTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATG
*
79962325 TATAAATGTGATAAG
1 TATATATGTGATAAG
79962340 TCCCGAAGGG
Statistics
Matches: 278, Mismatches: 14, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
45 25 0.09
46 16 0.06
47 196 0.71
49 40 0.14
50 1 0.00
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
Found at i:79971118 original size:58 final size:57
Alignment explanation
Indices: 79971000--79971119 Score: 136
Period size: 58 Copynumber: 2.1 Consensus size: 57
79970990 ACATTTTCAT
* * *
79971000 TTTCATTTCCATTTTGAGAAAATCACATTTATTTCCAAATGATTCCATTTTCTCCAA
1 TTTCATTTCCATTTTGAGAAAACCACAATCATTTCCAAATGATTCCATTTTCTCCAA
* * * *
79971057 TTTCATTTTCATTTTGGAGAAAACCATAATCATTTCCTGAATGTTTCC-TATTTCTCC-A
1 TTTCATTTCCATTTT-GAGAAAACCACAATCATTTCC-AAATGATTCCAT-TTTCTCCAA
79971115 TTTCA
1 TTTCA
79971120 CCATTTCTAT
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
57 14 0.26
58 24 0.45
59 15 0.28
ACGTcount: A:0.28, C:0.21, G:0.07, T:0.45
Consensus pattern (57 bp):
TTTCATTTCCATTTTGAGAAAACCACAATCATTTCCAAATGATTCCATTTTCTCCAA
Found at i:79978365 original size:47 final size:47
Alignment explanation
Indices: 79978299--79978727 Score: 732
Period size: 47 Copynumber: 9.1 Consensus size: 47
79978289 GAAATGATAG
79978299 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
79978346 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
79978395 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
79978442 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
79978489 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
79978536 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
79978583 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
79978630 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
79978677 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
79978724 TAAG
1 TAAG
79978728 TCCCGAAGGG
Statistics
Matches: 363, Mismatches: 17, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 316 0.87
49 47 0.13
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:79978902 original size:37 final size:37
Alignment explanation
Indices: 79978846--79978924 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
79978836 CCGAGCTCTA
* *
79978846 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
79978883 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
79978920 AAGAC
1 AAGAC
79978925 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:79984732 original size:79 final size:80
Alignment explanation
Indices: 79984634--79984816 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 80
79984624 TATCCGTTCA
* *
79984634 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
79984697 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
**
79984714 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
79984778 ATGGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
79984793 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
79984817 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:79984816 original size:40 final size:40
Alignment explanation
Indices: 79984632--79984816 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
79984622 GCTATCCGTT
* *
79984632 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
79984672 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
79984712 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
79984751 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
79984792 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
79984817 CATCATTCGA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:79990673 original size:25 final size:26
Alignment explanation
Indices: 79990645--79990696 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
79990635 TTTACAGTTT
79990645 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
79990670 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
79990696 T
1 T
79990697 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:80013967 original size:78 final size:77
Alignment explanation
Indices: 80013834--80014025 Score: 296
Period size: 78 Copynumber: 2.5 Consensus size: 77
80013824 TCATTCAATG
* * *
80013834 CTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTACCCGGAATTAGTA
1 CTTCGGGACTTAACCCGGA-ATTAATACTCGCAC-AAGGCCTTCGGGACTTACCCGGAATTAGTA
80013899 TCTCGCACAAAGGC
64 TCTCGCACAAAGGC
* *
80013913 CTTCGGGACTTAACCCCGAATTAATATTCGCACAAGGCCTTCGGGACTTAACCCGGAATTAGTAT
1 CTTCGGGACTTAACCCGGAATTAATACTCGCACAAGGCCTTCGGGACTT-ACCCGGAATTAGTAT
80013978 CTCGCACAAAGGC
65 CTCGCACAAAGGC
80013991 CTTCGGGACTT-ACCCGGAATTAATAACTCGCACAA
1 CTTCGGGACTTAACCCGGAATTAAT-ACTCGCACAA
80014026 ATTACCTTTC
Statistics
Matches: 104, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
77 27 0.26
78 59 0.57
79 18 0.17
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (77 bp):
CTTCGGGACTTAACCCGGAATTAATACTCGCACAAGGCCTTCGGGACTTACCCGGAATTAGTATC
TCGCACAAAGGC
Found at i:80014089 original size:39 final size:38
Alignment explanation
Indices: 80013834--80014089 Score: 241
Period size: 39 Copynumber: 6.5 Consensus size: 38
80013824 TCATTCAATG
* ** * *
80013834 CTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGC
1 CTTCGGGACTT-ACCCGGA-ATTAGTACTCGCACAAAGGC
80013874 CTTCGGGACTTACCCGGAATTAGTATCTCGCACAAAGGC
1 CTTCGGGACTTACCCGGAATTAGTA-CTCGCACAAAGGC
* * *
80013913 CTTCGGGACTTAACCCCGAATTAATATTCGCAC-AAGGC
1 CTTCGGGACTT-ACCCGGAATTAGTACTCGCACAAAGGC
80013951 CTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGC
1 CTTCGGGACTT-ACCCGGAATTAGTA-CTCGCACAAAGGC
* **
80013991 CTTCGGGACTTACCCGGAATTAATAACTCGCACAAATTAC
1 CTTCGGGACTTACCCGGAATTAGT-ACTCGCACAAA-GGC
* *
80014031 CTTTC-GGATCTTAGTCCGG-ATATAGTCACTAGCACAAA-GC
1 C-TTCGGGA-CTTA-CCCGGAAT-TAGT-ACTCGCACAAAGGC
80014071 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTA-CCCGGA
80014090 CAGCATTCAA
Statistics
Matches: 184, Mismatches: 20, Indels: 24
0.81 0.09 0.11
Matches are distributed among these distances:
38 33 0.18
39 75 0.41
40 50 0.27
41 9 0.05
42 17 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (38 bp):
CTTCGGGACTTACCCGGAATTAGTACTCGCACAAAGGC
Found at i:80021766 original size:39 final size:40
Alignment explanation
Indices: 80021689--80021795 Score: 119
Period size: 40 Copynumber: 2.7 Consensus size: 40
80021679 TAGCTCCTCG
* * *
80021689 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
80021729 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
**
80021768 CACGAATGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
80021796 ATTAGTATCT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
39 25 0.43
40 33 0.57
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:80021784 original size:40 final size:40
Alignment explanation
Indices: 80021735--80021955 Score: 279
Period size: 40 Copynumber: 5.5 Consensus size: 40
80021725 CTCATTCAAT
* * * * *
80021735 GCCTTCGGGACTTAACCCGGATTTTA-AAACTCGCACGAAT
1 GCCTTCGGGACTTAACCCGGA-ATTAGTATCTCGCACAAAG
80021775 GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
1 GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
*
80021815 GCCTTCGGGGCTTAACCCGGAATTAGTATCTCGCACAAAG
1 GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
*
80021855 GCCTTCGGGGCTTAACCCGGAATTAGTATCTCGCACAAAG
1 GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
** *
80021895 GCCTTCGGGACTTAGTCCGG-ATATAGTCA-CTTAGCACAAA-
1 GCCTTCGGGACTTAACCCGGAAT-TAGT-ATC-TCGCACAAAG
*
80021935 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
80021956 CAGCATTCAA
Statistics
Matches: 165, Mismatches: 11, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
39 5 0.03
40 151 0.92
41 9 0.05
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
Found at i:80021794 original size:79 final size:80
Alignment explanation
Indices: 80021695--80021955 Score: 244
Period size: 80 Copynumber: 3.3 Consensus size: 80
80021685 CTCGTTCAAG
* * * ** * *
80021695 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACTTAACCCGGAAT-TAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
80021758 TTA-AAACTCGCACGAA
64 TTAGAAACTCGCACAAA
* * *
80021774 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATT
1 TGCCTTCGGGACTTAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
* *
80021839 AGTATCTCGCACAAA
66 AGAAACTCGCACAAA
* * * * **
80021854 GGCCTTCGGGGCTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAGTCCGG-ATA
1 TGCCTTCGGGACTTAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAAT-
** *
80021918 TAGTCACTTAGCACAAA
65 TAGAAAC-TCGCACAAA
*
80021935 -GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGACTTAACCCGGA
80021956 CAGCATTCAA
Statistics
Matches: 154, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
79 33 0.21
80 113 0.73
81 8 0.05
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
TGCCTTCGGGACTTAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AGAAACTCGCACAAA
Found at i:80032577 original size:10 final size:9
Alignment explanation
Indices: 80032553--80032578 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
80032543 TTGACAGAAA
80032553 GCTTTTTTG
1 GCTTTTTTG
80032562 GCTTTTTTG
1 GCTTTTTTG
80032571 GCTTTTTT
1 GCTTTTTT
80032579 AGCGTCGACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.12, G:0.19, T:0.69
Consensus pattern (9 bp):
GCTTTTTTG
Found at i:80047204 original size:18 final size:19
Alignment explanation
Indices: 80047169--80047204 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
80047159 AAACTGATAC
*
80047169 ATAAAATTTTATAATATAG
1 ATAAAATTTGATAATATAG
80047188 ATAAAATTTGA-AATATA
1 ATAAAATTTGATAATATA
80047205 TAATGAGTGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39
Consensus pattern (19 bp):
ATAAAATTTGATAATATAG
Found at i:80049161 original size:40 final size:40
Alignment explanation
Indices: 80049106--80049323 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
80049096 CAGATGATAA
* *
80049106 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
80049146 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
80049186 CCGAGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
80049226 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
80049266 CCGGGATAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
80049306 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
80049324 TACTTGGTTT
Statistics
Matches: 162, Mismatches: 14, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
39 16 0.10
40 145 0.90
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:80055331 original size:93 final size:93
Alignment explanation
Indices: 80055172--80055342 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
80055162 GGATGGTTGA
* * * *
80055172 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGAGGCGAACGCCCGAACTCGTTGAGT
80055237 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
80055265 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGAGGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGAGGCGAACGCCCGAACTCGTTGAGT
80055330 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
80055343 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGAGGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80055345 original size:46 final size:46
Alignment explanation
Indices: 80055176--80055347 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
80055166 GGTTGAGCAT
* * *
80055176 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
80055222 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
* *
80055267 ATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGAGGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
80055315 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
80055348 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 2 0.02
46 59 0.57
47 27 0.26
48 4 0.04
50 3 0.03
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:80062812 original size:46 final size:46
Alignment explanation
Indices: 80062762--80062934 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
80062752 TGGTTGAGCA
80062762 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80062808 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
80062853 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
80062901 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
80062935 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80062918 original size:93 final size:93
Alignment explanation
Indices: 80062759--80062929 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
80062749 GGATGGTTGA
* *
80062759 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80062824 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
80062852 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80062917 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
80062930 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80066714 original size:17 final size:17
Alignment explanation
Indices: 80066694--80066727 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
80066684 AAGGCCAATT
*
80066694 TGGGCGTGTGGCCCATA
1 TGGGCCTGTGGCCCATA
*
80066711 TGGGCCTGTGGGCCATA
1 TGGGCCTGTGGCCCATA
80066728 ATTCTAAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.12, C:0.24, G:0.41, T:0.24
Consensus pattern (17 bp):
TGGGCCTGTGGCCCATA
Found at i:80073785 original size:40 final size:40
Alignment explanation
Indices: 80073687--80073949 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
80073677 TCCTCGTTCA
* * * * *
80073687 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
80073726 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
80073766 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
80073806 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
80073846 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
80073886 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
80073926 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
80073950 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:80081712 original size:40 final size:40
Alignment explanation
Indices: 80081614--80081876 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
80081604 TCCTCGTTCA
* * * * *
80081614 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
80081653 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
80081693 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
80081733 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
80081773 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
80081813 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
80081853 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
80081877 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:80085289 original size:15 final size:15
Alignment explanation
Indices: 80085271--80085302 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
80085261 ATAAATTTAT
*
80085271 TTATCCAAAATTCAA
1 TTATCCAAAATGCAA
80085286 TTATCCAAAATGCAA
1 TTATCCAAAATGCAA
80085301 TT
1 TT
80085303 CACTTCTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.44, C:0.19, G:0.03, T:0.34
Consensus pattern (15 bp):
TTATCCAAAATGCAA
Found at i:80089402 original size:42 final size:40
Alignment explanation
Indices: 80089345--80089538 Score: 217
Period size: 44 Copynumber: 4.7 Consensus size: 40
80089335 GACAAATCAG
*
80089345 CTATATGTGGCACTTAGTGTGCGATTTGACATAGCTTCGA
1 CTATATATGGCACTTAGTGTGCGATTTGACATAGCTTCGA
* * * *
80089385 CTATATATATGGCACTTAGTGTGTGATTCGACATAGTTTTGA
1 C--TATATATGGCACTTAGTGTGCGATTTGACATAGCTTCGA
*
80089427 CTATATATATATGGCACTTAGTGTGCGATTTGACATAGCTTCGG
1 C----TATATATGGCACTTAGTGTGCGATTTGACATAGCTTCGA
* * * * *
80089471 CTATATATGACACTTACTGTGCGAGATCGAGATAGCTTCGA
1 CTATATATGGCACTTAGTGTGCGA-TTTGACATAGCTTCGA
*
80089512 CTATATATGGCACTTAATGTGCGATTT
1 CTATATATGGCACTTAGTGTGCGATTT
80089539 AAAATAGCCT
Statistics
Matches: 129, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
40 23 0.18
41 34 0.26
42 35 0.27
44 37 0.29
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (40 bp):
CTATATATGGCACTTAGTGTGCGATTTGACATAGCTTCGA
Found at i:80095522 original size:21 final size:18
Alignment explanation
Indices: 80095496--80095538 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 18
80095486 AACGAGCTTG
80095496 TTTTATAGTGCTTTTAGATGT
1 TTTTATAGTG-TTTT-GA-GT
*
80095517 TTTTATTGTGTTTTGAGT
1 TTTTATAGTGTTTTGAGT
80095535 TTTT
1 TTTT
80095539 TATTGGTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 6 0.29
19 2 0.10
20 4 0.19
21 9 0.43
ACGTcount: A:0.14, C:0.02, G:0.19, T:0.65
Consensus pattern (18 bp):
TTTTATAGTGTTTTGAGT
Found at i:80096347 original size:19 final size:19
Alignment explanation
Indices: 80096325--80096361 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
80096315 AACGAATGTG
*
80096325 TGAATAATTAATGAATAAA
1 TGAATAATTAACGAATAAA
80096344 TGAATAATTAACGAATAA
1 TGAATAATTAACGAATAA
80096362 GTGACGGTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.57, C:0.03, G:0.11, T:0.30
Consensus pattern (19 bp):
TGAATAATTAACGAATAAA
Found at i:80097723 original size:45 final size:45
Alignment explanation
Indices: 80097674--80097957 Score: 303
Period size: 45 Copynumber: 6.3 Consensus size: 45
80097664 TTTTAGCCAG
* * * *
80097674 GGTCTTATTTATCTCTAACATGATGCCATAGTGTCTTTCAACTAT
1 GGTCTTATTCATTTCTGATATGATGCCATAGTGTCTTTCAACTAT
* *
80097719 GGTCTTATTCATTTCCG-TCATGTTGCCATAGTGTCTTTCAACTAT
1 GGTCTTATTCATTTCTGAT-ATGATGCCATAGTGTCTTTCAACTAT
* * *
80097764 GGTCTTATTCATTT-TCGGTATAGTAT--CATAGTGTTTTTGAACTAT
1 GGTCTTATTCATTTCT-GATAT-G-ATGCCATAGTGTCTTTCAACTAT
*
80097809 GGTCTTATTCATTTCTGGTAT-AGTGCCATAGTGTCTTTCAACTAT
1 GGTCTTATTCATTTCTGATATGA-TGCCATAGTGTCTTTCAACTAT
*
80097854 GGTCTTATTCATTTCCGATAT-AGTGCCATAGTGTCTTTCAACTAT
1 GGTCTTATTCATTTCTGATATGA-TGCCATAGTGTCTTTCAACTAT
* * * * * *
80097899 GGTCTTATTCATATCCGGTAT-AGTCCCATAGTCTCTTTCAACAAT
1 GGTCTTATTCATTTCTGATATGA-TGCCATAGTGTCTTTCAACTAT
80097944 GGTCTTATTCATTT
1 GGTCTTATTCATTT
80097958 TTCAAGCCAA
Statistics
Matches: 210, Mismatches: 20, Indels: 18
0.85 0.08 0.07
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
45 204 0.97
46 3 0.01
47 1 0.00
ACGTcount: A:0.21, C:0.19, G:0.15, T:0.44
Consensus pattern (45 bp):
GGTCTTATTCATTTCTGATATGATGCCATAGTGTCTTTCAACTAT
Found at i:80097807 original size:90 final size:89
Alignment explanation
Indices: 80097699--80097958 Score: 378
Period size: 90 Copynumber: 2.9 Consensus size: 89
80097689 TAACATGATG
80097699 CCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCGTCAT-GTTGCCATAGTGTCTTTCAACTA
1 CCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCGT-ATAG-TGCCATAGTGTCTTTCAACTA
*
80097763 TGGTCTTATTCATTTTCGGTATAGTA
64 TGGTCTTATTCATTTTCGATATAGTA
* * * *
80097789 TCATAGTGTTTTTGAACTATGGTCTTATTCATTTCTGGTATAGTGCCATAGTGTCTTTCAACTAT
1 CCATAGTGTCTTTCAACTATGGTCTTATTCATTTC-CGTATAGTGCCATAGTGTCTTTCAACTAT
* *
80097854 GGTCTTATTCATTTCCGATATAGTG
65 GGTCTTATTCATTTTCGATATAGTA
* * * *
80097879 CCATAGTGTCTTTCAACTATGGTCTTATTCATATCCGGTATAGTCCCATAGTCTCTTTCAACAAT
1 CCATAGTGTCTTTCAACTATGGTCTTATTCATTTCC-GTATAGTGCCATAGTGTCTTTCAACTAT
80097944 GGTCTTATTCATTTT
65 GGTCTTATTCATTTT
80097959 TCAAGCCAAT
Statistics
Matches: 151, Mismatches: 16, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
90 148 0.98
91 3 0.02
ACGTcount: A:0.21, C:0.19, G:0.15, T:0.44
Consensus pattern (89 bp):
CCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCGTATAGTGCCATAGTGTCTTTCAACTATG
GTCTTATTCATTTTCGATATAGTA
Found at i:80097918 original size:135 final size:135
Alignment explanation
Indices: 80097697--80097957 Score: 418
Period size: 135 Copynumber: 1.9 Consensus size: 135
80097687 TCTAACATGA
80097697 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCGTCATGTTGCCATAGTGTCTTTCAACT
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCGTCATGTTGCCATAGTGTCTTTCAACT
* * * * * * *
80097762 ATGGTCTTATTCATTTTCGGTATAGTATCATAGTGTTTTTGAACTATGGTCTTATTCATTTCTGG
66 ATGGTCTTATTCATATCCGGTATAGTACCATAGTCTCTTTCAACAATGGTCTTATTCATTTCTGG
80097827 TATAG
131 TATAG
80097832 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCGAT-ATAG-TGCCATAGTGTCTTTCAA
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCG-TCAT-GTTGCCATAGTGTCTTTCAA
*
80097895 CTATGGTCTTATTCATATCCGGTATAGTCCCATAGTCTCTTTCAACAATGGTCTTATTCATTT
64 CTATGGTCTTATTCATATCCGGTATAGTACCATAGTCTCTTTCAACAATGGTCTTATTCATTT
80097958 TTCAAGCCAA
Statistics
Matches: 116, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
135 114 0.98
136 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.16, T:0.44
Consensus pattern (135 bp):
TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCGTCATGTTGCCATAGTGTCTTTCAACT
ATGGTCTTATTCATATCCGGTATAGTACCATAGTCTCTTTCAACAATGGTCTTATTCATTTCTGG
TATAG
Found at i:80098444 original size:18 final size:18
Alignment explanation
Indices: 80098421--80098458 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
80098411 CATAAAAATT
80098421 AACCAAAATCATTTTACA
1 AACCAAAATCATTTTACA
80098439 AACCAAAATCATTTTACA
1 AACCAAAATCATTTTACA
80098457 AA
1 AA
80098459 ATTGTCTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.53, C:0.21, G:0.00, T:0.26
Consensus pattern (18 bp):
AACCAAAATCATTTTACA
Found at i:80106214 original size:29 final size:29
Alignment explanation
Indices: 80106175--80106253 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
80106165 CTTAATAATC
*
80106175 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
80106205 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
80106234 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
80106254 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:80114526 original size:29 final size:29
Alignment explanation
Indices: 80114487--80114565 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
80114477 CTTAATAATC
*
80114487 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
80114517 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
80114546 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
80114566 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:80130018 original size:93 final size:93
Alignment explanation
Indices: 80129890--80130061 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
80129880 GCCCATAAGT
* * * *
80129890 GAACTTGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
80129955 CGAGCTCAGATGCCTAGTTACATCTCTC
66 CGAGCTCAGATGCCTAGTTACATCTCTC
* *
80129983 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
* *
80130048 CGAGTTCGGATGCC
66 CGAGCTCAGATGCC
80130062 CAAATATCCT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCTC
Found at i:80130057 original size:46 final size:46
Alignment explanation
Indices: 80129882--80130057 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
80129872 TGTAACCCGC
* * * *
80129882 CCATAAGTGAACTTGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
80129928 CCATAAGTGAACTCAGACTCAACTCAACGAGCTC--AGATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
80129974 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
80130021 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
80130058 TGCCCAAATA
Statistics
Matches: 104, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 65 0.62
47 29 0.28
49 5 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:80138528 original size:26 final size:26
Alignment explanation
Indices: 80138499--80138551 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
80138489 TTTACAATTT
80138499 TACCCCTAGGAGATAAATT-ACCAAAA
1 TACCCCTAGG-GATAAATTGACCAAAA
* *
80138525 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCAAAA
80138551 T
1 T
80138552 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.40, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCAAAA
Found at i:80143095 original size:23 final size:22
Alignment explanation
Indices: 80143064--80143133 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 22
80143054 TTATAAAACC
* *
80143064 TAAAAATAAAGTAAAAATAGTAT
1 TAAAGATAAAGTAAAAATA-AAT
*
80143087 TAAAGATAAAATAAAAAGTAAAT
1 TAAAGATAAAGTAAAAA-TAAAT
80143110 TAAAAAGATAAAGATAAAAATAAA
1 T--AAAGATAAAG-TAAAAATAAA
80143134 AATAAAAATG
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
23 18 0.46
24 2 0.05
25 13 0.33
26 6 0.15
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (22 bp):
TAAAGATAAAGTAAAAATAAAT
Found at i:80143121 original size:13 final size:13
Alignment explanation
Indices: 80143088--80143141 Score: 67
Period size: 12 Copynumber: 4.2 Consensus size: 13
80143078 AAATAGTATT
80143088 AAAGATAAAATAA
1 AAAGATAAAATAA
*
80143101 AAAG-TAAATTAA
1 AAAGATAAAATAA
80143113 AAAGATAAAGATAA
1 AAAGATAAA-ATAA
*
80143127 AAATA-AAAATAA
1 AAAGATAAAATAA
80143139 AAA
1 AAA
80143142 TGTCTTCAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
12 18 0.50
13 11 0.31
14 7 0.19
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (13 bp):
AAAGATAAAATAA
Found at i:80153632 original size:39 final size:39
Alignment explanation
Indices: 80153561--80153665 Score: 122
Period size: 39 Copynumber: 2.7 Consensus size: 39
80153551 ACTAGCTCGA
* * * * **
80153561 AGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCATGT
1 AGCCTGC-GGACCTTAAGTCCGGATATAATTCCAGCACAT
* *
80153600 AGCCTGTGGACCTTAAGTCTGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
80153639 AGCCTGCGGACCTTAAGTCCGGATATA
1 AGCCTGCGGACCTTAAGTCCGGATATA
80153666 CATCACTGAA
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
38 3 0.05
39 52 0.95
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.26
Consensus pattern (39 bp):
AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
Found at i:80166886 original size:22 final size:22
Alignment explanation
Indices: 80166861--80166935 Score: 82
Period size: 22 Copynumber: 3.4 Consensus size: 22
80166851 TAAATAGCAT
80166861 GAAACCTAAAGCATTTAACAGA
1 GAAACCTAAAGCATTTAACAGA
* * *
80166883 GAAATCTAAA-C-TTAAATAGCA
1 GAAACCTAAAGCATTTAACAG-A
80166904 TGAAACCTAAAGCATTTAACAGA
1 -GAAACCTAAAGCATTTAACAGA
*
80166927 GAAATCTAA
1 GAAACCTAA
80166936 GGCAAGAAAC
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
20 6 0.14
21 2 0.05
22 26 0.62
23 2 0.05
24 6 0.14
ACGTcount: A:0.51, C:0.16, G:0.12, T:0.21
Consensus pattern (22 bp):
GAAACCTAAAGCATTTAACAGA
Found at i:80166909 original size:44 final size:44
Alignment explanation
Indices: 80166846--80166935 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
80166836 TTATGCAAGA
80166846 AAACTTAAATAGCATGAAACCTAAAGCATTTAACAGAGAAATCT
1 AAACTTAAATAGCATGAAACCTAAAGCATTTAACAGAGAAATCT
80166890 AAACTTAAATAGCATGAAACCTAAAGCATTTAACAGAGAAATCT
1 AAACTTAAATAGCATGAAACCTAAAGCATTTAACAGAGAAATCT
80166934 AA
1 AA
80166936 GGCAAGAAAC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.51, C:0.16, G:0.11, T:0.22
Consensus pattern (44 bp):
AAACTTAAATAGCATGAAACCTAAAGCATTTAACAGAGAAATCT
Found at i:80170188 original size:20 final size:20
Alignment explanation
Indices: 80170122--80170188 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
80170112 ATTTTAGTAA
*
80170122 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
80170142 ACATGACATGTATGCTATGC
1 ACATGATATGTATGATATGC
80170162 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
80170182 ACATGAT
1 ACATGAT
80170189 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:80170311 original size:49 final size:49
Alignment explanation
Indices: 80170238--80170358 Score: 208
Period size: 49 Copynumber: 2.5 Consensus size: 49
80170228 GAGGAAGTGT
*
80170238 AAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTT-TGCCCCAGTTATG
1 AAAAGGGCTTATGCCCCAGTTATGATAAAGGGATTATGCCCCAGTTATG
*
80170286 ATAAAGGGCTTATGCCCCAGTTATGATAAAGGGATTATGCCCCAGTTATT
1 A-AAAGGGCTTATGCCCCAGTTATGATAAAGGGATTATGCCCCAGTTATG
80170336 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
80170359 TAAAAGAGGC
Statistics
Matches: 69, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
48 1 0.01
49 55 0.80
50 13 0.19
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (49 bp):
AAAAGGGCTTATGCCCCAGTTATGATAAAGGGATTATGCCCCAGTTATG
Found at i:80170364 original size:24 final size:25
Alignment explanation
Indices: 80170239--80170358 Score: 208
Period size: 25 Copynumber: 4.9 Consensus size: 25
80170229 AGGAAGTGTA
80170239 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
80170264 AAAGGGCTT-TGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
80170288 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
* *
80170313 AAAGGGATTATGCCCCAGTTATTA-
1 AAAGGGCTTATGCCCCAGTTATGAT
80170337 AAAGGGCTTATGCCCCAGTTAT
1 AAAGGGCTTATGCCCCAGTTAT
80170359 TAAAAGAGGC
Statistics
Matches: 91, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
24 45 0.49
25 46 0.51
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28
Consensus pattern (25 bp):
AAAGGGCTTATGCCCCAGTTATGAT
Found at i:80170381 original size:25 final size:24
Alignment explanation
Indices: 80170237--80170383 Score: 145
Period size: 24 Copynumber: 6.0 Consensus size: 24
80170227 GGAGGAAGTG
*
80170237 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTAGGCCCCAGTTAT
* *
80170261 GATAAAGGGCTT-TGCCCCAGTTAT
1 TA-AAAGGGCTTAGGCCCCAGTTAT
* *
80170285 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTAGGCCCCAGTTAT
* * *
80170310 GATAAAGGGATTATGCCCCAGTTAT
1 TA-AAAGGGCTTAGGCCCCAGTTAT
*
80170335 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTAGGCCCCAGTTAT
*
80170359 TAAAAGAGGC-TAGGCCTCTAGTTAT
1 TAAAAG-GGCTTAGGCC-CCAGTTAT
80170384 ATGATAAAGC
Statistics
Matches: 113, Mismatches: 6, Indels: 7
0.90 0.05 0.06
Matches are distributed among these distances:
24 57 0.50
25 56 0.50
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (24 bp):
TAAAAGGGCTTAGGCCCCAGTTAT
Found at i:80170612 original size:31 final size:31
Alignment explanation
Indices: 80170577--80170639 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
80170567 CGTTTACAGT
80170577 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
80170608 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
80170639 A
1 A
80170640 GTGTGAAAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:80178303 original size:20 final size:20
Alignment explanation
Indices: 80178237--80178303 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
80178227 ATTTTAGTAA
*
80178237 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
80178257 ACATGACATGTATGCTATGC
1 ACATGATATGTATGATATGC
80178277 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
80178297 ACATGAT
1 ACATGAT
80178304 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Done.