Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 247 of 290
Found at i:80178433 original size:23 final size:23
Alignment explanation
Indices: 80178354--80178472 Score: 195
Period size: 24 Copynumber: 5.1 Consensus size: 23
80178344 AGGAAGTGTA
80178354 AAAGGGCTTATGCCCCAGTTATGT
1 AAAGGGCTTATGCCCCAGTTAT-T
*
80178378 AAAGGGCTTATGCCCCAGTTATG
1 AAAGGGCTTATGCCCCAGTTATT
80178401 ATAAGGGCTTATGCCCCAGTTATT
1 A-AAGGGCTTATGCCCCAGTTATT
80178425 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
80178448 AAAAGGCTT-TGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
80178470 AAA
1 AAA
80178473 AGAGGCTAGG
Statistics
Matches: 91, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
22 16 0.18
23 31 0.34
24 44 0.48
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:80178444 original size:47 final size:46
Alignment explanation
Indices: 80178354--80178472 Score: 195
Period size: 47 Copynumber: 2.6 Consensus size: 46
80178344 AGGAAGTGTA
80178354 AAAGGGCTTATGCCCCAGTTATGTAAAGGGCTTATGCCCCAGTTATG
1 AAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATG
*
80178401 ATAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 A-AAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATG
*
80178448 AAAAGGCTT-TGCCCCAGTTATTAAA
1 AAAGGGCTTATGCCCCAGTTATTAAA
80178473 AGAGGCTAGG
Statistics
Matches: 69, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
45 16 0.23
46 7 0.10
47 25 0.36
48 21 0.30
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATG
Found at i:80178721 original size:31 final size:31
Alignment explanation
Indices: 80178686--80178748 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
80178676 CGTTTACAGT
80178686 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
80178717 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
80178748 A
1 A
80178749 GTGTGAAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:80186400 original size:20 final size:20
Alignment explanation
Indices: 80186334--80186400 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
80186324 ATTTTAGTAA
*
80186334 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
80186354 ACATGACATGTATGCTATGC
1 ACATGATATGTATGATATGC
80186374 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
80186394 ACATGAT
1 ACATGAT
80186401 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:80186479 original size:25 final size:25
Alignment explanation
Indices: 80186451--80186579 Score: 140
Period size: 25 Copynumber: 5.2 Consensus size: 25
80186441 AGGAAGTGTA
80186451 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
80186476 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
* * *
80186501 AAAGAGCTTATGCCCCAGTTCTTA-
1 AAAGGGCTTATGCCCCAGTTATGAT
* *
80186525 AAAGGGCTT-TGCCCTAGTTATTA-
1 AAAGGGCTTATGCCCCAGTTATGAT
*
80186548 AAAGAGGC-TAGGCCTCCAGTTATATGAT
1 AAAG-GGCTTATGCC-CCAG-T-TATGAT
80186576 AAAG
1 AAAG
80186580 CAGCTATGCT
Statistics
Matches: 89, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
23 17 0.19
24 14 0.16
25 49 0.55
26 1 0.01
27 4 0.04
28 4 0.04
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (25 bp):
AAAGGGCTTATGCCCCAGTTATGAT
Found at i:80186545 original size:73 final size:76
Alignment explanation
Indices: 80186449--80186588 Score: 184
Period size: 73 Copynumber: 1.9 Consensus size: 76
80186439 GGAGGAAGTG
*
80186449 TAAAAGGGCTTATGCCCCAGTTATGATAAAG-GGCTTATGCC-CCAG-T-TATGATAAAG-AGCT
1 TAAAAGGGCTTATGCCCCAGTTATGA-AAAGAGGC-TAGGCCTCCAGTTATATGATAAAGCAGC-
80186509 TATGCCCCAGTTCT
63 TATGCCCCAGTTCT
* *
80186523 TAAAAGGGCTT-TGCCCTAGTTATTAAAAGAGGCTAGGCCTCCAGTTATATGATAAAGCAGCTAT
1 TAAAAGGGCTTATGCCCCAGTTATGAAAAGAGGCTAGGCCTCCAGTTATATGATAAAGCAGCTAT
80186587 GC
66 GC
80186589 TGCCAGTGGA
Statistics
Matches: 58, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
72 9 0.16
73 19 0.33
74 12 0.21
75 15 0.26
76 3 0.05
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (76 bp):
TAAAAGGGCTTATGCCCCAGTTATGAAAAGAGGCTAGGCCTCCAGTTATATGATAAAGCAGCTAT
GCCCCAGTTCT
Found at i:80186799 original size:31 final size:31
Alignment explanation
Indices: 80186764--80186826 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
80186754 CGTTTACAGT
*
80186764 AAAGGCTTTGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
80186795 AAAGGCTTCGTCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
80186826 A
1 A
80186827 GTGTGAAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.40, C:0.14, G:0.21, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:80190583 original size:43 final size:44
Alignment explanation
Indices: 80190484--80190584 Score: 111
Period size: 42 Copynumber: 2.4 Consensus size: 44
80190474 CCAGACGTGG
* * *
80190484 TCTTACATGT-AATCAAATAACGATGCGACTGTCCCAAACAGGG
1 TCTTACACGTAAATCAAATAACGATACGACTGTCCCAAACAGGA
* * *
80190527 TCTTACACG-AAATCAAAT-ACGATACTGA-TGTCCTAGACATGA
1 TCTTACACGTAAATCAAATAACGATAC-GACTGTCCCAAACAGGA
80190569 TCTTACACGTAAATCA
1 TCTTACACGTAAATCA
80190585 TAAGTCGATG
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
42 25 0.51
43 24 0.49
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.26
Consensus pattern (44 bp):
TCTTACACGTAAATCAAATAACGATACGACTGTCCCAAACAGGA
Found at i:80192490 original size:20 final size:20
Alignment explanation
Indices: 80192465--80192506 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
80192455 TAATAAGTTG
*
80192465 AATTATTAAACAATGCCTGA
1 AATTATTAAACAATGCATGA
80192485 AATTATTAAACAATGCATGA
1 AATTATTAAACAATGCATGA
80192505 AA
1 AA
80192507 AGGTAACCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.29
Consensus pattern (20 bp):
AATTATTAAACAATGCATGA
Found at i:80193987 original size:46 final size:46
Alignment explanation
Indices: 80193937--80194109 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
80193927 TGGTTGAGCA
* *
80193937 TCCGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
80193983 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
80194030 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
80194076 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
80194110 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:80194093 original size:93 final size:93
Alignment explanation
Indices: 80193934--80194104 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
80193924 GGATGGTTGA
* * *
80193934 GCATCCGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
80193999 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
80194027 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
80194092 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
80194105 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80194371 original size:19 final size:20
Alignment explanation
Indices: 80194334--80194371 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
80194324 ATAAGGTGGT
80194334 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
80194354 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
80194372 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:80202231 original size:39 final size:39
Alignment explanation
Indices: 80202149--80202324 Score: 239
Period size: 39 Copynumber: 4.5 Consensus size: 39
80202139 GTGTGAGATA
*
80202149 TATATCCGGGCTAACTCCCGAAGGCATT-GTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
80202187 TATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* *
80202226 TATATCTGAGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * * *
80202265 TATATTCGGGCTAAGTCCTGAAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
80202303 TATATCCAGGCTTAAAGTCCCG
1 TATATCCGGGC-T-AAGTCCCG
80202325 CATGCTTTGT
Statistics
Matches: 121, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
38 46 0.38
39 68 0.56
40 7 0.06
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.31
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:80202245 original size:77 final size:77
Alignment explanation
Indices: 80202149--80202309 Score: 252
Period size: 77 Copynumber: 2.1 Consensus size: 77
80202139 GTGTGAGATA
*
80202149 TATATCCGGGCTAACTCCCGAAGGCATT-GTGCTGGTGTTATATCCGGGCTAAGTCCTGAAGGCA
1 TATATCCGAGCTAACTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCTGAAGGC-
*
80202213 TTCGTGCTGGTGT
65 TTCGTGCTGGTAT
* * *
80202226 TATATCTGAGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATTCGGGCTAAGTCCTGAAGGCT
1 TATATCCGAGCTAACTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCTGAAGGCT
*
80202291 TTGTGCTGGTAT
66 TCGTGCTGGTAT
80202303 TATATCC
1 TATATCC
80202310 AGGCTTAAAG
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
77 42 0.55
78 34 0.45
ACGTcount: A:0.19, C:0.20, G:0.28, T:0.32
Consensus pattern (77 bp):
TATATCCGAGCTAACTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCTGAAGGCT
TCGTGCTGGTAT
Found at i:80217020 original size:18 final size:18
Alignment explanation
Indices: 80216992--80217040 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
80216982 GGTGATGACG
*
80216992 ATGATGATGAAGAATATT
1 ATGACGATGAAGAATATT
* *
80217010 ATTACGATGAAGATTATT
1 ATGACGATGAAGAATATT
*
80217028 ATGATGATGAAGA
1 ATGACGATGAAGA
80217041 CGACGACGAC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.43, C:0.02, G:0.22, T:0.33
Consensus pattern (18 bp):
ATGACGATGAAGAATATT
Found at i:80217109 original size:18 final size:18
Alignment explanation
Indices: 80217088--80217122 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
80217078 GAATATAATG
*
80217088 ATGAGAAAGATAAGAAAA
1 ATGAGAAAGAAAAGAAAA
80217106 ATGAGAAAGAAAAGAAA
1 ATGAGAAAGAAAAGAAA
80217123 TAAAATTGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.69, C:0.00, G:0.23, T:0.09
Consensus pattern (18 bp):
ATGAGAAAGAAAAGAAAA
Found at i:80217732 original size:34 final size:34
Alignment explanation
Indices: 80217689--80217756 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
80217679 TATAGATAAG
80217689 ATAGAATTTTAAATAGGATCAATTTATTATTTGA
1 ATAGAATTTTAAATAGGATCAATTTATTATTTGA
80217723 ATAGAATTTTAAATAGGATCAATTTATTATTTGA
1 ATAGAATTTTAAATAGGATCAATTTATTATTTGA
80217757 TTTATCGTGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.41, C:0.03, G:0.12, T:0.44
Consensus pattern (34 bp):
ATAGAATTTTAAATAGGATCAATTTATTATTTGA
Found at i:80220827 original size:32 final size:33
Alignment explanation
Indices: 80220791--80220863 Score: 87
Period size: 33 Copynumber: 2.2 Consensus size: 33
80220781 CAGTTTTTAT
80220791 AAAATATTTT-CAAAAACTTT-GCCAAACAACAG
1 AAAATATTTTACAAAAA-TTTAGCCAAACAACAG
* * * *
80220823 AAAATATTTTACATAGATTTATCCAAACACCAG
1 AAAATATTTTACAAAAATTTAGCCAAACAACAG
80220856 AAAATATT
1 AAAATATT
80220864 AGCTTTTCTA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
32 13 0.37
33 22 0.63
ACGTcount: A:0.49, C:0.16, G:0.05, T:0.29
Consensus pattern (33 bp):
AAAATATTTTACAAAAATTTAGCCAAACAACAG
Found at i:80222806 original size:21 final size:21
Alignment explanation
Indices: 80222772--80222811 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
80222762 CTTGAACAAC
*
80222772 TTTTAGATTATTTGTTTTACT
1 TTTTAGATTATTTGATTTACT
80222793 TTTTA-ATTATTTTGATTTA
1 TTTTAGATTA-TTTGATTTA
80222812 AAAAATGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.23, C:0.03, G:0.07, T:0.68
Consensus pattern (21 bp):
TTTTAGATTATTTGATTTACT
Found at i:80224838 original size:34 final size:34
Alignment explanation
Indices: 80224794--80224858 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
80224784 TATTTGGGTT
*
80224794 AAATATGCTCTCCCAATATGATCCCATTTTACCC
1 AAATAGGCTCTCCCAATATGATCCCATTTTACCC
80224828 AAATAGGCTCTCCCAATATGATCCCATTTTA
1 AAATAGGCTCTCCCAATATGATCCCATTTTA
80224859 TCTTATGGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (34 bp):
AAATAGGCTCTCCCAATATGATCCCATTTTACCC
Found at i:80228104 original size:43 final size:42
Alignment explanation
Indices: 80228043--80228123 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 42
80228033 AATTCCAATG
* *
80228043 TCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTA
1 TCCCAGACGTGGTCTTACACGAAATCAAATAT-GATGCCACTA
*
80228086 TCCCAGACAG-GGTTTTACACGAAATCAAATATGATGCC
1 TCCCAGAC-GTGGTCTTACACGAAATCAAATATGATGCC
80228124 GATGTCCCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
42 6 0.18
43 27 0.79
44 1 0.03
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (42 bp):
TCCCAGACGTGGTCTTACACGAAATCAAATATGATGCCACTA
Found at i:80228146 original size:42 final size:43
Alignment explanation
Indices: 80228055--80228147 Score: 100
Period size: 42 Copynumber: 2.2 Consensus size: 43
80228045 CCAGACGTGG
* * * * *
80228055 TCTTACATGTAATCAAATATCGATGCCACTATCCCAGACAGGG
1 TCTTACACGAAATCAAATATCGATGCCACTATCCCAAACACGA
* *
80228098 TTTTACACGAAATCAAATAT-GATGCCGA-TGTCCCAAACACGA
1 TCTTACACGAAATCAAATATCGATGCC-ACTATCCCAAACACGA
80228140 TCTTACAC
1 TCTTACAC
80228148 TTAAATCTCA
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
42 23 0.56
43 18 0.44
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.26
Consensus pattern (43 bp):
TCTTACACGAAATCAAATATCGATGCCACTATCCCAAACACGA
Found at i:80230310 original size:13 final size:13
Alignment explanation
Indices: 80230292--80230319 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
80230282 CTATCTGACA
80230292 CAATAGATAATGG
1 CAATAGATAATGG
80230305 CAATAGATAATGG
1 CAATAGATAATGG
80230318 CA
1 CA
80230320 CCCCGTGCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.11, G:0.21, T:0.21
Consensus pattern (13 bp):
CAATAGATAATGG
Found at i:80235081 original size:54 final size:54
Alignment explanation
Indices: 80234890--80235094 Score: 232
Period size: 55 Copynumber: 3.8 Consensus size: 54
80234880 TTTCCTTTTT
* * * * * *
80234890 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCTTTGCCTTATA
* * * *
80234943 GAACTCACCAATGCCATGCCTTGGCATGGGCTTACATGAGACCTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCTTTGCCTTATA
* ** * *
80234997 GTAACTCATCAATGCCATGTTTTGACATGGTCTTACATGATTTCTTTTCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCTTTGCCTTATA
* * *
80235052 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATC
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATC
80235095 CTTATCTTAC
Statistics
Matches: 126, Mismatches: 24, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
53 43 0.34
54 38 0.30
55 45 0.36
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.36
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCTTTGCCTTATA
Found at i:80235129 original size:47 final size:47
Alignment explanation
Indices: 80235076--80235197 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
80235066 CATGCCTTGG
*
80235076 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCAAATTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCAAATTCCAAA
**
80235123 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCAAATTCCAAA
* *
80235170 CATGGTCATACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTATCTTA
80235198 GTGCCAATGC
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCAAATTCCAAA
Found at i:80241199 original size:53 final size:54
Alignment explanation
Indices: 80241131--80241338 Score: 215
Period size: 53 Copynumber: 3.9 Consensus size: 54
80241121 TTTCCTTTTT
* * * *
80241131 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * *
80241184 GAACTCACCAATGCCATGCCTTGGCATAGTCTTACATGGGA-CCTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATA
* * * * *
80241238 GTAACTCATCAATGCCATG-TTTCGACATGGTCTTACATGTTTTCCTTTCCTTATA
1 G-AACTCACCAATGCCATGCCTT-GACATGGTCTTACATGGTATCCTTGCCTTATA
* ** * *
80241293 GAACTTATTAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
80241339 ATCTTACCAA
Statistics
Matches: 128, Mismatches: 21, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
52 2 0.02
53 43 0.34
54 39 0.30
55 42 0.33
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.37
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
Found at i:80241256 original size:55 final size:54
Alignment explanation
Indices: 80241142--80241330 Score: 206
Period size: 55 Copynumber: 3.5 Consensus size: 54
80241132 AACTTACCAT
* * *
80241142 TGCCATGTCTTGACATGGTCTTACGTGGTATCC-TTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTTGCCTTATAGAACTCATCAA
* * *
80241195 TGCCATGCCTTGGCATAGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAG-AACTCATCAA
* * * * *
80241250 TGCCATG-TTTCGACATGGTCTTACATGTTTTCCTTT-CCTTATAGAACTTATTAA
1 TGCCATGCCTT-GACATGGTCTTACATG-GTACCTTTGCCTTATAGAACTCATCAA
*
80241304 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
80241331 ATATCCTTAT
Statistics
Matches: 114, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
52 2 0.02
53 34 0.30
54 33 0.29
55 40 0.35
56 5 0.04
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAGAACTCATCAA
Found at i:80241372 original size:47 final size:47
Alignment explanation
Indices: 80241317--80241438 Score: 226
Period size: 47 Copynumber: 2.6 Consensus size: 47
80241307 CATGCCTTGG
80241317 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
* *
80241364 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
80241411 CATGGTCTTACATGATATCCTTATCTTA
1 CATGGTCTTACATGATATCCTTATCTTA
80241439 GTGCCAATGC
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:80246078 original size:46 final size:46
Alignment explanation
Indices: 80246028--80246203 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
80246018 TGGTTGAGCA
*
80246028 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
80246074 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
80246121 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
80246167 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80246204 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 64 0.60
47 28 0.26
48 3 0.03
50 4 0.04
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:80246184 original size:93 final size:93
Alignment explanation
Indices: 80246025--80246195 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
80246015 GGATGGTTGA
* *
80246025 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
80246090 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
80246118 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
80246183 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
80246196 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:80251609 original size:50 final size:50
Alignment explanation
Indices: 80251451--80251689 Score: 292
Period size: 50 Copynumber: 4.9 Consensus size: 50
80251441 GGTAATATGT
* * *
80251451 CGATACCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCAGTGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATATCAGTGC
* * ** * *
80251501 CAATGCCATGTTCCAAACATGGTCTTATACTAGC-C-CACCTGTCGAG-GT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATATC-AGTGC
* * * *
80251549 CGATGCCATG-TCTTAGACATGATCTTGCACTAGCTCTCATATATCAGTGC
1 CGATGCCATGTTC-CAAACATGGTCTTACACTAGCTCTCATATATCAGTGC
*
80251599 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATATCGGTGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATATCAGTGC
80251649 CGATGCCATGTTCCAAACATGGTCTTACACTAGC-C-CATATA
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATA
80251690 ACCCTAGTAT
Statistics
Matches: 159, Mismatches: 24, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
47 2 0.01
48 37 0.23
49 7 0.04
50 111 0.70
51 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (50 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATATCAGTGC
Found at i:80251618 original size:98 final size:98
Alignment explanation
Indices: 80251449--80251689 Score: 290
Period size: 98 Copynumber: 2.5 Consensus size: 98
80251439 AGGGTAATAT
* *
80251449 GTCGATACCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCAGTGCCAATGCCATGTTC
1 GTCGATACCATGTCCCAAACATGATCTTACACTAGCTCTCATATATCAGTGCCAATGCCATGTTC
*
80251514 CAAACATGGTCTTATACTAGCCCACCTGTCGAG
66 CAAACATGGTCTTACACTAGCCCACCTGTCGAG
* ** * * *
80251547 GTCGATGCCATGTCTTAGACATGATCTTGCACTAGCTCTCATATATCAGTGCCGATGCCATGTTC
1 GTCGATACCATGTCCCAAACATGATCTTACACTAGCTCTCATATATCAGTGCCAATGCCATGTTC
** *
80251612 CAAACATGGTCTTACACTAGCTCTCATATATCG-G
66 CAAACATGGTCTTACACTAGC-C-CACCTGTCGAG
* * * *
80251646 TGCCGATGCCATGTTCCAAACATGGTCTTACACTAGC-C-CATATA
1 -GTCGATACCATGTCCCAAACATGATCTTACACTAGCTCTCATATA
80251690 ACCCTAGTAT
Statistics
Matches: 121, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
98 83 0.69
99 3 0.02
100 35 0.29
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.29
Consensus pattern (98 bp):
GTCGATACCATGTCCCAAACATGATCTTACACTAGCTCTCATATATCAGTGCCAATGCCATGTTC
CAAACATGGTCTTACACTAGCCCACCTGTCGAG
Found at i:80254974 original size:15 final size:15
Alignment explanation
Indices: 80254956--80255007 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
80254946 CCTAATAAAA
80254956 ATAATAGATAATTAT
1 ATAATAGATAATTAT
* **
80254971 ATAATATATAAAAAT
1 ATAATAGATAATTAT
80254986 ATAAT-GAATAATATAT
1 ATAATAG-ATAAT-TAT
80255002 ATAATA
1 ATAATA
80255008 AAATGTATAA
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
15 21 0.75
16 7 0.25
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (15 bp):
ATAATAGATAATTAT
Found at i:80254999 original size:27 final size:28
Alignment explanation
Indices: 80254948--80255010 Score: 78
Period size: 27 Copynumber: 2.3 Consensus size: 28
80254938 AAATTATACC
*
80254948 TAATAAAAATAATAGATAATTATATA-A
1 TAATAAAAATAATAGATAATAATATATA
80254975 TATATAAAAAT-ATA-ATGAATAATATATA
1 TA-ATAAAAATAATAGAT-AATAATATATA
80255003 TAATAAAA
1 TAATAAAA
80255011 TGTATAAATC
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
26 2 0.06
27 19 0.59
28 11 0.34
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (28 bp):
TAATAAAAATAATAGATAATAATATATA
Found at i:80255000 original size:12 final size:11
Alignment explanation
Indices: 80254948--80255079 Score: 53
Period size: 10 Copynumber: 12.9 Consensus size: 11
80254938 AAATTATACC
80254948 TAATAA-AA-A
1 TAATAATAATA
80254957 TAATAGATAAT-
1 TAATA-ATAATA
80254968 T-AT-ATAATA
1 TAATAATAATA
*
80254977 T-ATAAAAATA
1 TAATAATAATA
80254987 TAATGAATAATA
1 TAAT-AATAATA
80254999 T-AT-ATAATA
1 TAATAATAATA
* *
80255008 AAATGTATAA-A
1 TAAT-AATAATA
80255019 TCAA-AAT-ATA
1 T-AATAATAATA
*
80255029 TAATAA-AATG
1 TAATAATAATA
80255039 T-A-AATAATA
1 TAATAATAATA
80255048 TAATACA-AA-A
1 TAATA-ATAATA
*
80255058 TAAAAATAATA
1 TAATAATAATA
80255069 TATATAATAAT
1 TA-ATAATAAT
80255080 TTTTTTACAT
Statistics
Matches: 93, Mismatches: 9, Indels: 39
0.66 0.06 0.28
Matches are distributed among these distances:
8 7 0.08
9 23 0.25
10 28 0.30
11 14 0.15
12 21 0.23
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.33
Consensus pattern (11 bp):
TAATAATAATA
Found at i:80255010 original size:26 final size:25
Alignment explanation
Indices: 80254948--80255078 Score: 98
Period size: 26 Copynumber: 5.2 Consensus size: 25
80254938 AAATTATACC
80254948 TAATAAAA-ATAATAGATAATTATATAA
1 TAATAAAATATAATA-ATAA-TATAT-A
80254975 TATATAAAAATATAATGAATAATATATA
1 TA-AT-AAAATATAAT-AATAATATATA
* *
80255003 TAATAAAATGT-ATAAATCAAAATATA
1 TAATAAAATATAAT-AAT-AATATATA
*
80255029 TAATAAAATGT-A-AATAATATA-A
1 TAATAAAATATAATAATAATATATA
*
80255051 T-ACAAAATA-AA-AATAATATATA
1 TAATAAAATATAATAATAATATATA
80255073 TAATAA
1 TAATAA
80255079 TTTTTTTACA
Statistics
Matches: 89, Mismatches: 7, Indels: 20
0.77 0.06 0.17
Matches are distributed among these distances:
21 16 0.18
22 4 0.04
23 8 0.09
24 3 0.03
25 5 0.06
26 25 0.28
27 4 0.04
28 5 0.06
29 9 0.10
30 9 0.10
31 1 0.01
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (25 bp):
TAATAAAATATAATAATAATATATA
Found at i:80255016 original size:14 final size:14
Alignment explanation
Indices: 80254984--80255047 Score: 62
Period size: 14 Copynumber: 4.6 Consensus size: 14
80254974 ATATATAAAA
*
80254984 ATATAATGAATAATAT
1 ATATAAT-AA-AATGT
80255000 ATATAATAAAATGT
1 ATATAATAAAATGT
80255014 ATA-AATCAAAA--T
1 ATATAAT-AAAATGT
80255026 ATATAATAAAATGT
1 ATATAATAAAATGT
*
80255040 AAATAATA
1 ATATAATA
80255048 TAATACAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
12 8 0.19
13 6 0.14
14 19 0.45
15 2 0.05
16 7 0.17
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.33
Consensus pattern (14 bp):
ATATAATAAAATGT
Found at i:80255050 original size:19 final size:19
Alignment explanation
Indices: 80255016--80255075 Score: 59
Period size: 21 Copynumber: 3.1 Consensus size: 19
80255006 TAAAATGTAT
*
80255016 AAATCAAAAT-ATATAATA
1 AAATAAAAATAATATAATA
**
80255034 AAATGTAAATAATATAATACA
1 AAATAAAAATAATATAAT--A
80255055 AAATAAAAATAATATATATA
1 AAATAAAAATAATATA-ATA
80255075 A
1 A
80255076 TAATTTTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
18 8 0.24
19 7 0.21
20 2 0.06
21 15 0.44
22 2 0.06
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (19 bp):
AAATAAAAATAATATAATA
Found at i:80255153 original size:16 final size:17
Alignment explanation
Indices: 80255117--80255154 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
80255107 GGTAAAATAA
*
80255117 ATAAAATATATAATATT
1 ATAAAATAAATAATATT
80255134 -TAAAATAAATAA-ATT
1 ATAAAATAAATAATATT
80255149 ATAAAA
1 ATAAAA
80255155 ATTTAAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 3 0.16
16 16 0.84
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
ATAAAATAAATAATATT
Found at i:80255163 original size:25 final size:25
Alignment explanation
Indices: 80255109--80255162 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
80255099 ATGTTTATGG
*
80255109 TAAAATAAATAAAATATATAATATT
1 TAAAATAAATAAAATATATAAAATT
*
80255134 TAAAATAAATAAATTATA-AAAATT
1 TAAAATAAATAAAATATATAAAATT
80255158 TAAAA
1 TAAAA
80255163 AGGATTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 10 0.37
25 17 0.63
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (25 bp):
TAAAATAAATAAAATATATAAAATT
Found at i:80256871 original size:44 final size:44
Alignment explanation
Indices: 80256771--80257021 Score: 379
Period size: 44 Copynumber: 5.8 Consensus size: 44
80256761 CAAATGTCAG
* * *
80256771 ATCTGTTATCTTTGATCTGCTCTTTGTCAATAC--AGA-G--AA
1 ATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA
* *
80256810 ATCTG-CTATCTTCGATCTGCTTTCTATCAATACAGAGACGCCAA
1 ATCTGTC-ATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA
*
80256854 ATCTGTCATCTTCGATCTGCTCTCTGTCAATATAGAGACGCCAA
1 ATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA
80256898 ATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA
1 ATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA
80256942 ATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA
1 ATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA
* *
80256986 ATCTATCATCTTCGACCTGCTCTCTGTCAATACAGA
1 ATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGA
80257022 TGTAACACCC
Statistics
Matches: 194, Mismatches: 11, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
39 27 0.14
41 3 0.02
42 1 0.01
44 162 0.84
45 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.15, T:0.33
Consensus pattern (44 bp):
ATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA
Found at i:80257820 original size:35 final size:35
Alignment explanation
Indices: 80257769--80257841 Score: 128
Period size: 35 Copynumber: 2.1 Consensus size: 35
80257759 ACACATTCTT
* *
80257769 TATTCTCGTCAGATCAATTTCACATAAATAATATA
1 TATTCTCGTCAAATCAATCTCACATAAATAATATA
80257804 TATTCTCGTCAAATCAATCTCACATAAATAATATA
1 TATTCTCGTCAAATCAATCTCACATAAATAATATA
80257839 TAT
1 TAT
80257842 CACATACCTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.41, C:0.18, G:0.04, T:0.37
Consensus pattern (35 bp):
TATTCTCGTCAAATCAATCTCACATAAATAATATA
Found at i:80272758 original size:18 final size:16
Alignment explanation
Indices: 80272737--80272856 Score: 55
Period size: 14 Copynumber: 7.9 Consensus size: 16
80272727 AAAATAAAAG
80272737 ATAATTATATAATATATA
1 ATAA-TATATAATA-ATA
*
80272755 ATAA-AAAT-ATAATGA
1 ATAATATATAATAAT-A
80272770 ATAATATAT-ATAATA
1 ATAATATATAATAATA
* *
80272785 A-AATGTGT-A-AATCA
1 ATAATATATAATAAT-A
80272799 A-AATATATAATAA-A
1 ATAATATATAATAATA
* *
80272813 AT-GTAAATAAT-ATA
1 ATAATATATAATAATA
* * *
80272827 ATAAAAAATAAAAATA
1 ATAATATATAATAATA
80272843 AT-ATATATAATAAT
1 ATAATATATAATAAT
80272857 TTTTTTTACA
Statistics
Matches: 79, Mismatches: 14, Indels: 21
0.69 0.12 0.18
Matches are distributed among these distances:
13 4 0.05
14 27 0.34
15 26 0.33
16 18 0.23
18 4 0.05
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.33
Consensus pattern (16 bp):
ATAATATATAATAATA
Found at i:80272760 original size:32 final size:34
Alignment explanation
Indices: 80272721--80272854 Score: 91
Period size: 32 Copynumber: 3.9 Consensus size: 34
80272711 AAATTATACC
80272721 TAATAAAAA-ATAAA-AGATAAT-TATATAATATA
1 TAATAAAAATATAAAGA-ATAATATATATAATATA
* *
80272753 TAATAAAAATATAATGAATAATATATATAATAAAA
1 TAATAAAAATATAAAGAATAATATATATAAT-ATA
** * * * * *
80272788 TGTGTAAATCAAAATATATAATAAAATGTA-AATAATA
1 T-AATAAA--AATATAAAGAATAATATATATAAT-ATA
80272825 TAATAAAAA-ATAAA-AATAATATATATAATA
1 TAATAAAAATATAAAGAATAATATATATAATA
80272855 ATTTTTTTTA
Statistics
Matches: 78, Mismatches: 16, Indels: 16
0.71 0.15 0.15
Matches are distributed among these distances:
32 19 0.24
33 16 0.21
34 11 0.14
35 3 0.04
36 8 0.10
37 7 0.09
38 14 0.18
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (34 bp):
TAATAAAAATATAAAGAATAATATATATAATATA
Found at i:80272787 original size:26 final size:23
Alignment explanation
Indices: 80272729--80272855 Score: 105
Period size: 26 Copynumber: 5.2 Consensus size: 23
80272719 CCTAATAAAA
* *
80272729 AATAAAAGATAATTATATAATATAT
1 AATAAAATATAAATA-AT-ATATAT
80272754 AATAAAAATATAATGAATAATATATAT
1 AAT-AAAATAT-A--AATAATATATAT
* *
80272781 AATAAAATGTGTAAATCAAAATATAT
1 AATAAAA--TATAAAT-AATATATAT
*
80272807 AATAAAATGTAAATAATATA-AT
1 AATAAAATATAAATAATATATAT
*
80272829 AA-AAAATAAAAATAATATATAT
1 AATAAAATATAAATAATATATAT
80272851 AATAA
1 AATAA
80272856 TTTTTTTTAC
Statistics
Matches: 86, Mismatches: 7, Indels: 20
0.76 0.06 0.18
Matches are distributed among these distances:
21 15 0.17
22 8 0.09
23 7 0.08
24 7 0.08
25 6 0.07
26 25 0.29
27 11 0.13
28 4 0.05
29 3 0.03
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (23 bp):
AATAAAATATAAATAATATATAT
Found at i:80272789 original size:21 final size:22
Alignment explanation
Indices: 80272760--80272855 Score: 90
Period size: 21 Copynumber: 4.2 Consensus size: 22
80272750 ATATAATAAA
*
80272760 AATATAATG-AATAATATATAT
1 AATAAAATGAAATAATATATAT
*
80272781 AATAAAATGTGTAAATCAAAATATAT
1 AATAAAA--TG-AAAT-AATATATAT
80272807 AATAAAATGTAAATAATATA-AT
1 AATAAAATG-AAATAATATATAT
*
80272829 AA-AAAATAAAAATAATATATAT
1 AATAAAAT-GAAATAATATATAT
80272851 AATAA
1 AATAA
80272856 TTTTTTTTAC
Statistics
Matches: 63, Mismatches: 4, Indels: 14
0.78 0.05 0.17
Matches are distributed among these distances:
21 21 0.33
22 8 0.13
23 9 0.14
24 7 0.11
25 3 0.05
26 15 0.24
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (22 bp):
AATAAAATGAAATAATATATAT
Found at i:80272838 original size:19 final size:19
Alignment explanation
Indices: 80272799--80272842 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
80272789 GTGTAAATCA
**
80272799 AAAT-ATATAATAAAATGT
1 AAATAATATAATAAAAAAT
80272817 AAATAATATAATAAAAAAT
1 AAATAATATAATAAAAAAT
80272836 AAA-AATA
1 AAATAATA
80272843 ATATATATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.27
Consensus pattern (19 bp):
AAATAATATAATAAAAAAT
Found at i:80272931 original size:16 final size:17
Alignment explanation
Indices: 80272895--80272932 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
80272885 GGTAAAATAA
*
80272895 ATAAAATATATAATATT
1 ATAAAATAAATAATATT
80272912 -TAAAATAAATAA-ATT
1 ATAAAATAAATAATATT
80272927 ATAAAA
1 ATAAAA
80272933 ATTTAAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 3 0.16
16 16 0.84
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
ATAAAATAAATAATATT
Found at i:80272941 original size:25 final size:25
Alignment explanation
Indices: 80272887--80272940 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
80272877 ATGTTTATGG
*
80272887 TAAAATAAATAAAATATATAATATT
1 TAAAATAAATAAAATATATAAAATT
*
80272912 TAAAATAAATAAATTATA-AAAATT
1 TAAAATAAATAAAATATATAAAATT
80272936 TAAAA
1 TAAAA
80272941 AGGATTAAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 10 0.37
25 17 0.63
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (25 bp):
TAAAATAAATAAAATATATAAAATT
Found at i:80277478 original size:64 final size:64
Alignment explanation
Indices: 80277312--80277484 Score: 179
Period size: 68 Copynumber: 2.6 Consensus size: 64
80277302 TGGATGATAC
* * * *
80277312 AGATAGTATGTAGCTAGGTCACATGTATGGTTCTAAGTGCACATCATGTGTACAAGAGAGCTACA
1 AGATA-TATGTAGCTAGGTCGCATGTGT-GTACTAAGTGCACACCATGTGTACAAGAGAGCTAC-
80277377 AG
63 AG
* * * *
80277379 ACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGCTA
1 AGA-TAT-ATGTAGCTAGGTCGCATGTGTG-TACTAAGTGCACACCATGT-GTACAAGAGAGCTA
80277443 C-G
62 CAG
*
80277445 GGATATATGTAGCTAGGTCGCATGTGTAGTACTAAGTGCA
1 AGATATATGTAGCTAGGTCGCATGTGT-GTACTAAGTGCA
80277485 GGCTACTATG
Statistics
Matches: 88, Mismatches: 13, Indels: 13
0.77 0.11 0.11
Matches are distributed among these distances:
64 29 0.33
65 4 0.05
66 2 0.02
67 4 0.05
68 48 0.55
69 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCGCATGTGTGTACTAAGTGCACACCATGTGTACAAGAGAGCTACAG
Found at i:80277589 original size:50 final size:50
Alignment explanation
Indices: 80277458--80277655 Score: 236
Period size: 50 Copynumber: 4.0 Consensus size: 50
80277448 TATATGTAGC
* * * *
80277458 TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T
* * * * ** *
80277509 TTGATCACTTGTGTAGTACTAAGTGTAGGCTACTACGTGTATTAGATAGT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAAT
* *
80277559 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAAT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAAT
* * *
80277609 T-GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
80277656 GTTTGGCTAC
Statistics
Matches: 123, Mismatches: 24, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
49 41 0.33
50 44 0.36
51 38 0.31
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAAT
Found at i:80280438 original size:46 final size:45
Alignment explanation
Indices: 80280387--80280546 Score: 146
Period size: 46 Copynumber: 3.5 Consensus size: 45
80280377 GCAAACTCAG
* *
80280387 ACTCAAATCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGA
1 ACTCAACTCAACGAGCTCGGACGTT-GCATCCATAAGTGAACTCGA
* * * *
80280433 ACTCAACTCAACGAGCTCAGATGCCTAGTTACAT-C-TCA-CGAACTCGA
1 ACTCAACTCAACGAGCTC-G--GAC--GTTGCATCCATAAGTGAACTCGA
* * *
80280480 ACTCAACTCAACGAGTTCGGACGTTTGCATCCATAAGTGAACTTGT
1 ACTCAACTCAACGAGCTCGGACG-TTGCATCCATAAGTGAACTCGA
*
80280526 ACTCAACTCAACGAGTTCGGA
1 ACTCAACTCAACGAGCTCGGA
80280547 TGCCCAAATA
Statistics
Matches: 93, Mismatches: 12, Indels: 18
0.76 0.10 0.15
Matches are distributed among these distances:
42 1 0.01
43 5 0.05
44 3 0.03
45 2 0.02
46 45 0.48
47 26 0.28
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.23
Consensus pattern (45 bp):
ACTCAACTCAACGAGCTCGGACGTTGCATCCATAAGTGAACTCGA
Found at i:80283312 original size:15 final size:15
Alignment explanation
Indices: 80283284--80283331 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
80283274 AGAAAATCGA
*
80283284 ATAAAGAAATCCAAG
1 ATAAAGAAACCCAAG
** *
80283299 ATTGAGAAACCCAAA
1 ATAAAGAAACCCAAG
80283314 ATAAAGAAACCCAAG
1 ATAAAGAAACCCAAG
80283329 ATA
1 ATA
80283332 CGATACTATG
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.58, C:0.17, G:0.12, T:0.12
Consensus pattern (15 bp):
ATAAAGAAACCCAAG
Found at i:80283744 original size:32 final size:32
Alignment explanation
Indices: 80283708--80283770 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
80283698 TTTTTTGAGA
80283708 ACGGATAAATACATAGAACATCTCAGAAAAAT
1 ACGGATAAATACATAGAACATCTCAGAAAAAT
80283740 ACGGATAAATACATAGAACATCTCAGAAAAA
1 ACGGATAAATACATAGAACATCTCAGAAAAA
80283771 CTGTTAAATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.54, C:0.16, G:0.13, T:0.17
Consensus pattern (32 bp):
ACGGATAAATACATAGAACATCTCAGAAAAAT
Found at i:80286465 original size:46 final size:46
Alignment explanation
Indices: 80286300--80286475 Score: 142
Period size: 46 Copynumber: 3.8 Consensus size: 46
80286290 TGTAACCCGC
** * * * *
80286300 CCATAAGCAAACTCAGACTCAAATCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTTGCAT
* * * *
80286346 CCATAAGTGAACTCAGACTCAACTCAATGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA--CGT--TTGCAT
* * * * *
80286396 -C-TCA-CGAACTCGAACTCCACTCAACGAGTTCGGACGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTTGCAT
* *
80286439 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
80286476 TGCCCAAATA
Statistics
Matches: 101, Mismatches: 22, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 4 0.04
46 58 0.57
47 24 0.24
48 4 0.04
49 1 0.01
50 4 0.04
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTTGCAT
Found at i:80288611 original size:42 final size:43
Alignment explanation
Indices: 80288541--80288664 Score: 157
Period size: 42 Copynumber: 2.8 Consensus size: 43
80288531 TTACCGATGG
80288541 TGTC-CGAGGCTCCCGCCACATCCAAGCACCAAGGTGCCAA-TGC
1 TGTCTCGAGGCT-CCG-CACATCCAAGCACCAAGGTGCCAATTGC
*
80288584 TGTCTCGAGGCTCCGCGAC-TCCAAGCACCAATGTGCCAATTGC
1 TGTCTCGAGGCTCCGC-ACATCCAAGCACCAAGGTGCCAATTGC
80288627 TG-CTCGAGGCTCTCGCACATCCAAGGCACCAAGTGTGC
1 TGTCTCGAGGCTC-CGCACATCCAA-GCACCAAG-GTGC
80288665 GATGGTGCCG
Statistics
Matches: 72, Mismatches: 2, Indels: 12
0.84 0.02 0.14
Matches are distributed among these distances:
42 32 0.44
43 22 0.31
44 14 0.19
45 4 0.06
ACGTcount: A:0.22, C:0.36, G:0.24, T:0.18
Consensus pattern (43 bp):
TGTCTCGAGGCTCCGCACATCCAAGCACCAAGGTGCCAATTGC
Found at i:80288992 original size:41 final size:41
Alignment explanation
Indices: 80288780--80289340 Score: 345
Period size: 42 Copynumber: 13.7 Consensus size: 41
80288770 CGACGTGTCT
*
80288780 CGCACGATCAAGGCCTAGGTTGCCGATGT-GCTGCGAGGCTGCCC
1 CGCACGACCAAGGCCTAGGTTGCCGATGTGGC--CGAGGCT--CC
* * * **
80288824 CGCACGGCCGGAGGGCCTAGGTTGCCGATG-GAACCCGAGATTCC
1 CGCACGACC--AAGGCCTAGGTTGCCGATGTG--GCCGAGGCTCC
*
80288868 CGCAC-ATCTAAGGGCCTAGG--GCCGAT-TGTGCCGAGGCT-C
1 CGCACGA-CCAA-GGCCTAGGTTGCCGATGTG-GCCGAGGCTCC
* * *
80288907 CGCAGCGACCAATGCCTAGG-TGCCAATGT---CGAGGCTCT
1 CGCA-CGACCAAGGCCTAGGTTGCCGATGTGGCCGAGGCTCC
80288945 CGCACGACCAAGGCCTAGGTTGCCGATGTGGCCGAGGCTCC
1 CGCACGACCAAGGCCTAGGTTGCCGATGTGGCCGAGGCTCC
* * *
80288986 CGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTGC
1 CGCACGACCA-AGGCCTAGGTTGCCGAT-GTGGCCGAGGCTCC
* * * *
80289029 CGTAC-ATCC-AGCACCAAGG-TGCCGATGGTGCCCGAGGCTCC
1 CGCACGA-CCAAG-GCCTAGGTTGCCGAT-GTGGCCGAGGCTCC
* *
80289070 CGCACGAACCAAGGGCCTAGG-TG-CGATGGTGCCCGAGGTCTCT
1 CGCACG-ACCAA-GGCCTAGGTTGCCGAT-GTGGCCGAGG-CTCC
* * *
80289113 CG-ACGACACAGGGCCTAGGTTGTCGATGGTGG-CGAAGCTCC
1 CGCACGAC-CAAGGCCTAGGTTGCCGAT-GTGGCCGAGGCTCC
* * *
80289154 CTACATGACCAGGGGCCTAGG-T-CCGATGGTGG-CGAGGCTCC
1 C-GCACGACCA-AGGCCTAGGTTGCCGAT-GTGGCCGAGGCTCC
80289195 CGCACGACCAAGCGCCTAGGTTGCCGATGGTGG-CGAGGCTCC
1 CGCACGACCAAG-GCCTAGGTTGCCGAT-GTGGCCGAGGCTCC
* * *
80289237 CGCACGACCAGGAGCCTAGGTT-TCGATG-GTGCC--GGCTCT
1 CGCACGACCAAG-GCCTAGGTTGCCGATGTG-GCCGAGGCTCC
***
80289276 CGCACGACCAAGGCCTAGG-TGCCGATG-GTATGAGGCTCC
1 CGCACGACCAAGGCCTAGGTTGCCGATGTGGCCGAGGCTCC
* *
80289315 CGCGCGA-CAGGGCCTAGGTTG-CGATG
1 CGCACGACCAAGGCCTAGGTTGCCGATG
80289341 GTGCCCTAGC
Statistics
Matches: 421, Mismatches: 55, Indels: 88
0.75 0.10 0.16
Matches are distributed among these distances:
37 22 0.05
38 40 0.10
39 43 0.10
40 31 0.07
41 91 0.22
42 93 0.22
43 61 0.14
44 16 0.04
46 23 0.05
48 1 0.00
ACGTcount: A:0.18, C:0.31, G:0.35, T:0.16
Consensus pattern (41 bp):
CGCACGACCAAGGCCTAGGTTGCCGATGTGGCCGAGGCTCC
Found at i:80289230 original size:42 final size:42
Alignment explanation
Indices: 80288780--80289343 Score: 418
Period size: 41 Copynumber: 13.8 Consensus size: 42
80288770 CGACGTGTCT
*
80288780 CGCACGATCAA-GGCCTAGGTTGCCGAT-GTGCTGCGAGGCTGCCC
1 CGCACGACCAAGGGCCTAGGTTGCCGATGGTG--GCGAGGCT--CC
* * *** **
80288824 CGCACGGCCGGAGGGCCTAGGTTGCCGATGGAACCCGAGATTCC
1 CGCACGACC-AAGGGCCTAGGTTGCCGATGG-TGGCGAGGCTCC
* * *
80288868 CGCAC-ATCTAAGGGCCTAGG--GCCGATTGTGCCGAGGCT-C
1 CGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGGCGAGGCTCC
* * *
80288907 CGCAGCGACCAA-TGCCTAGG-TGCCAAT-GT--CGAGGCTCT
1 CGCA-CGACCAAGGGCCTAGGTTGCCGATGGTGGCGAGGCTCC
80288945 CGCACGACCAA-GGCCTAGGTTGCCGAT-GTGGCCGAGGCTCC
1 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGG-CGAGGCTCC
* * *
80288986 CGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTGC
1 CGCACGACCAAGGGCCTAGGTTGCCGATGGTG-GCGAGGCTCC
* ** * *
80289029 CGTAC-ATCC-AGCACCAAGG-TGCCGATGGTGCCCGAGGCTCC
1 CGCACGA-CCAAGGGCCTAGGTTGCCGATGGTG-GCGAGGCTCC
* *
80289070 CGCACGAACCAAGGGCCTAGG-TG-CGATGGTGCCCGAGGTCTCT
1 CGCACG-ACCAAGGGCCTAGGTTGCCGATGGTG-GCGAGG-CTCC
* *
80289113 CG-ACGA-CACAGGGCCTAGGTTGTCGATGGTGGCGAAGCTCC
1 CGCACGACCA-AGGGCCTAGGTTGCCGATGGTGGCGAGGCTCC
* * *
80289154 CTACATGACCAGGGGCCTAGG-T-CCGATGGTGGCGAGGCTCC
1 C-GCACGACCAAGGGCCTAGGTTGCCGATGGTGGCGAGGCTCC
*
80289195 CGCACGACCAAGCGCCTAGGTTGCCGATGGTGGCGAGGCTCC
1 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCGAGGCTCC
* * *
80289237 CGCACGACC-AGGAGCCTAGGTT-TCGATGGT-GC-CGGCTCT
1 CGCACGACCAAGG-GCCTAGGTTGCCGATGGTGGCGAGGCTCC
**
80289276 CGCACGACCAA-GGCCTAGG-TGCCGATGGT-ATGAGGCTCC
1 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCGAGGCTCC
*
80289315 CGCGCGA-C-AGGGCCTAGGTTG-CGATGGTG
1 CGCACGACCAAGGGCCTAGGTTGCCGATGGTG
80289344 CCCTAGCTCC
Statistics
Matches: 425, Mismatches: 59, Indels: 77
0.76 0.11 0.14
Matches are distributed among these distances:
37 23 0.05
38 42 0.10
39 42 0.10
40 35 0.08
41 94 0.22
42 87 0.20
43 62 0.15
44 17 0.04
45 1 0.00
46 21 0.05
47 1 0.00
ACGTcount: A:0.18, C:0.31, G:0.35, T:0.16
Consensus pattern (42 bp):
CGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCGAGGCTCC
Found at i:80289704 original size:23 final size:24
Alignment explanation
Indices: 80289654--80289705 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
80289644 ATTTTCATAT
80289654 CGGGATGGCTCGCCGGAGACCGCG
1 CGGGATGGCTCGCCGGAGACCGCG
80289678 CGGGATGGCTC-CCGGAGCACCGC-
1 CGGGATGGCTCGCCGGAG-ACCGCG
80289701 CGGGA
1 CGGGA
80289706 ACCTAACCGC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
23 11 0.41
24 16 0.59
ACGTcount: A:0.13, C:0.35, G:0.44, T:0.08
Consensus pattern (24 bp):
CGGGATGGCTCGCCGGAGACCGCG
Found at i:80292190 original size:46 final size:45
Alignment explanation
Indices: 80292139--80292298 Score: 146
Period size: 46 Copynumber: 3.5 Consensus size: 45
80292129 GCAAACTCAG
* *
80292139 ACTCAAATCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGA
1 ACTCAACTCAACGAGCTCGGACGTT-GCATCCATAAGTGAACTCGA
* * * *
80292185 ACTCAACTCAACGAGCTCAGATGCCTAGTTACAT-C-TCA-CGAACTCGA
1 ACTCAACTCAACGAGCTC-G--GAC--GTTGCATCCATAAGTGAACTCGA
* * *
80292232 ACTCAACTCAACGAGTTCGGACGTTTGCATCCATAAGTGAACTTGT
1 ACTCAACTCAACGAGCTCGGACG-TTGCATCCATAAGTGAACTCGA
*
80292278 ACTCAACTCAACGAGTTCGGA
1 ACTCAACTCAACGAGCTCGGA
80292299 TGCCCAAATA
Statistics
Matches: 93, Mismatches: 12, Indels: 18
0.76 0.10 0.15
Matches are distributed among these distances:
42 1 0.01
43 5 0.05
44 3 0.03
45 2 0.02
46 45 0.48
47 26 0.28
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.23
Consensus pattern (45 bp):
ACTCAACTCAACGAGCTCGGACGTTGCATCCATAAGTGAACTCGA
Found at i:80298177 original size:46 final size:46
Alignment explanation
Indices: 80298012--80298187 Score: 142
Period size: 46 Copynumber: 3.8 Consensus size: 46
80298002 CCATGTAACC
** * * * *
80298012 CCATAAGCAAACTCAGACTCAAATCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTTGCAT
* * * *
80298058 CCATAAGTGAACTCAGACTCAACTCAATGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA--CGT--TTGCAT
* * * * *
80298108 -C-TCA-CGAACTCGAACTCCACTCAACGAGTTCGGACGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTTGCAT
* *
80298151 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
80298188 TGCCCAAATA
Statistics
Matches: 101, Mismatches: 22, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 4 0.04
46 58 0.57
47 24 0.24
48 4 0.04
49 1 0.01
50 4 0.04
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTTGCAT
Found at i:80302245 original size:37 final size:37
Alignment explanation
Indices: 80302174--80302245 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
80302164 AGAGCTTTCG
** *
80302174 GGATTGCCTCCAGATCGTGAGGTTGAATTTGGGATCC
1 GGATTGCCTCCAGATCGTGAGGTCAAATTCGGGATCC
80302211 GGATTGCCTCCAGATCGTGAGGTCAAATTCGGGAT
1 GGATTGCCTCCAGATCGTGAGGTCAAATTCGGGAT
80302246 TGAACTCCTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.28
Consensus pattern (37 bp):
GGATTGCCTCCAGATCGTGAGGTCAAATTCGGGATCC
Found at i:80305331 original size:56 final size:56
Alignment explanation
Indices: 80305217--80305327 Score: 163
Period size: 57 Copynumber: 2.0 Consensus size: 56
80305207 GGGGAGGAAG
* *
80305217 GGACGATTCATTCATTGTTGGTACCGGACATGCAACGGTATCCGAATCCTACCTTT
1 GGACGATTCATTCATTATTGGTACCGAACATGCAACGGTATCCGAATCCTACCTTT
* *
80305273 GGACGATTCATTCATTATTGGGTACCGAACATGTAACGGTAT-C-AATTCTACCTTT
1 GGACGATTCATTCATTATT-GGTACCGAACATGCAACGGTATCCGAATCCTACCTTT
80305328 TGGATTGGGA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
55 11 0.22
56 19 0.38
57 20 0.40
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (56 bp):
GGACGATTCATTCATTATTGGTACCGAACATGCAACGGTATCCGAATCCTACCTTT
Found at i:80313387 original size:85 final size:84
Alignment explanation
Indices: 80313173--80314135 Score: 966
Period size: 85 Copynumber: 11.4 Consensus size: 84
80313163 CATCCAACGT
* * * * * *
80313173 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGAC-ATGCTTCTCGA
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGA
**
80313237 GGCTCCCGCAC-ATCCAAGCA
65 GGCTCCCGCACGA-CCAAGGG
* * * *
80313257 CCAAGGTGCC-AGTGCTGCTCGAGGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGCCCG
1 CCTAGGTGCCGA-TGGTGCCCGAGGCTCCCGCACATCCAA-GCACCTAGGTGCCGATGGTGCCCG
*
80313321 AGGCTCCCGTACGACCAAGGG
64 AGGCTCCCGCACGACCAAGGG
* * ** * *
80313342 CCGAGGCTGCCGATGGCGTTCGAGGCTCCCGCACATCCAAGCACCAAGGTGTCGATGGTGCCCGA
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGA
* * *
80313407 GGTTCTCGCACGATCAA-GG
65 GGCTCCCGCACGACCAAGGG
* * * * * *
80313426 CCCAGGTTGCCGATGGTGCTCGAGGTTCTCGCACGAT-CAAG-GCCTAGGTTGCCGATGATGCCC
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCTAGG-TGCCGATGGTGCCC
* *
80313489 GAGGCGCCCGCACGACCAGGGG
63 GAGGCTCCCGCACGACCAAGGG
** * ** * * *
80313511 CCTAGGTTGCCGATGGAACCCGAGGCTCCCGCACATCTAAGGGCCTAGGAGCCAATGGTGGCCGA
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGA
*
80313576 GGCTCCCGCACGACCAATGG
65 GGCTCCCGCACGACCAAGGG
* * **
80313596 CCTAGGTGCCAATGGT-CCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCTAGG-TGCCGATGGTGCCCG
*
80313659 AGGCTCCCGCACGACCAGGGG
64 AGGCTCCCGCACGACCAAGGG
* * *
80313680 CCT-GGTTGCCGATGGTGCCCGAGGCTCCCGTACATCCAAGCACCAAGGTGCCGATGGTGCCTGA
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGA
80313744 GGCTCCCGCACGACCAAGGG
65 GGCTCCCGCACGACCAAGGG
* * * ** *
80313764 CCTAAGTGCCGATGGTGCCCGAGGCTCTCGTACGA-CCAAGGGCCTAGGTTGCCGATGGTGGCCG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCTAGG-TGCCGATGGTGCCCG
* ** * *
80313828 AAGCTCCTACATGACCAGGGG
64 AGGCTCCCGCACGACCAAGGG
* *
80313849 CCTAGGTGCCGATGGTGGCCGAGGCTCCCGCACGA-CCAAGCACCTAGGTTGCCGATGGTGGCCG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCTAGG-TGCCGATGGTGCCCG
80313913 AGGCTCCCGCACGACC-AGGAG
64 AGGCTCCCGCACGACCAAGG-G
* * ** ***
80313934 CCTAGGTTCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGT-ATTG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCTAGG-TGCCGATGGTGCCCG
*
80313997 AGGCTCCCGCACGACCAGGGG
64 AGGCTCCCGCACGACCAAGGG
* *
80314018 CCTAGGTTGCCGATGGTGCCCTAGGCTCCCGCACATCCAAGCACCAAGGTGCC-AGTGGTGCCCG
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGA-TGGTGCCCG
* * *
80314082 AGGCTCCCACAGGACTAAGGG
64 AGGCTCCCGCACGACCAAGGG
*
80314103 GCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC
80314136 GATAAATGTC
Statistics
Matches: 741, Mismatches: 113, Indels: 50
0.82 0.12 0.06
Matches are distributed among these distances:
82 1 0.00
83 63 0.09
84 266 0.36
85 374 0.50
86 36 0.05
87 1 0.00
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (84 bp):
CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAG
GCTCCCGCACGACCAAGGG
Found at i:80313481 original size:169 final size:170
Alignment explanation
Indices: 80313173--80314160 Score: 1185
Period size: 169 Copynumber: 5.8 Consensus size: 170
80313163 CATCCAACGT
* * * * *
80313173 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGAC-ATGCTTCTCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
** * * * *
80313237 GGCTCCCGCAC-ATCCAAGCACCAAGGTGCC-AGTGCTGCTCGAGGCTCCCGCAC-ATCCAAGGC
66 GGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGA-TGGTGCCCGAGGCTCTCGCACGA-CCAAGG-
* * * *
80313299 ACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGG
127 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
* * * ** *
80313342 CCGAGGCTGCCGATGGCGTTCGAGGCTCCCGCACATCCAAGCACCAAGGTGTCGATGGTGCCCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
* * * * * * *
80313407 GGTTCTCGCACGATCAA-GGCCCAGGTTGCCGATGGTGCTCGAGGTTCTCGCACGATCAA-GGCC
66 GGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCC
* *
80313470 TAGGTTGCCGATGATGCCCGAGGCGCCCGCACGACCAGGGG
130 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
** * ** * * * *
80313511 CCTAGGTTGCCGATGGAACCCGAGGCTCCCGCACATCTAAGGGCCTAGGAGCCAATGGTGGCCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
* *
80313576 GGCTCCCGCACGACCAATGGCCTAGGTGCCAATGGT-CCCGAGGCTCTCGCACGACCAAGGGCCT
66 GGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCT
80313640 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
131 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
* *
80313680 CCT-GGTTGCCGATGGTGCCCGAGGCTCCCGTACATCCAAGCACCAAGGTGCCGATGGTGCCTGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
* *
80313744 GGCTCCCGCACGACCAAGGGCCTAAGTGCCGATGGTGCCCGAGGCTCTCGTACGACCAAGGGCCT
66 GGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCT
* * ** *
80313809 AGGTTGCCGATGGTGGCCGAAGCTCCTACATGACCAGGGG
131 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
* * *
80313849 CCTAGG-TGCCGATGGTGGCCGAGGCTCCCGCACGA-CCAAGCACCTAGGTTGCCGATGGTGGCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCC
*
80313912 GAGGCTCCCGCACGACC-AGGAGCCTAGGTTCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
64 GAGGCTCCCGCACGACCAAGG-GCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
***
80313976 CCTAGGTTGCCGATGGT-ATTGAGGCTCCCGCACGACCAGGGG
128 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
*
80314018 CCTAGGTTGCCGATGGTGCCCTAGGCTCCCGCACATCCAAGCACCAAGGTGCC-AGTGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA-TGGTGCCCG
* * * * * ** * *
80314082 AGGCTCCCACAGGACTAAGGGGCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGATAAATGTCC
65 AGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCC
*
80314147 TAGGTTACCGATGG
130 TAGGTTGCCGATGG
80314161 CGTCCAAGGC
Statistics
Matches: 704, Mismatches: 98, Indels: 34
0.84 0.12 0.04
Matches are distributed among these distances:
168 108 0.15
169 412 0.59
170 181 0.26
171 3 0.00
ACGTcount: A:0.19, C:0.33, G:0.32, T:0.16
Consensus pattern (170 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
GGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCT
AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
Found at i:80313525 original size:127 final size:127
Alignment explanation
Indices: 80313176--80314160 Score: 923
Period size: 127 Copynumber: 7.8 Consensus size: 127
80313166 CCAACGTCCT
* ** * * * * *
80313176 AGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGAC-ATGCTTCTCGAGG
1 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGG
** * * *
80313239 CTCCCGCAC-ATCCAAGCACCAAGG-TGCC-AGTGCTGCTCGAGGCTCCCGCAC-ATCCAAGGCA
65 CTCCCGCACGA-CCAAGGGCCTAGGTTGCCGA-TGGTGCCCGAGGCTCCCGCACGA-CCAAGGC-
80313300 CC
126 CC
* * * **
80313302 AAGG-TGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCGAGGCTGCCGATGGCGTTCGAG
1 -AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAG
** * * * * *
80313366 GCTCCCGCAC-ATCCAAGCACCAAGG-TGTCGATGGTGCCCGAGGTTCTCGCACGATCAAGGCCC
64 GCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCCC
* * * * *
80313429 AGGTTGCCGATGGTGCTCGAGGTTCTCGCACGATCAA-GGCCTAGGTTGCCGATGATGCCCGAGG
1 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGG
* * ** * *
80313493 CGCCCGCACGACCAGGGGCCTAGGTTGCCGATGGAACCCGAGGCTCCCGCAC-ATCTAAGGGCCT
65 CTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA-GGCCC
* * * * *
80313557 AGG-AGCCAATGGTGGCCGAGGCTCCCGCACGACCAATGGCCTAGGTGCCAATGGT-CCCGAGGC
1 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGC
* * *
80313620 TCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCC
66 TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCCC
* * ** * *
80313682 TGGTTGCCGATGGTGCCCGAGGCTCCCGTAC-ATCCAAGCACCAAGGTGCCGATGGTGCCTGAGG
1 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGG
* * * *
80313746 CTCCCGCACGACCAAGGGCCTAAG-TGCCGATGGTGCCCGAGGCTCTCGTACGACCAAGGGCCT
65 CTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCC
* * ** * * *
80313809 AGGTTGCCGATGGTGGCCGAAGCTCCTACATGACCAGGGGCCTAGGTGCCGATGGTGGCCGAGGC
1 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGC
** * * *
80313874 TCCCGCACGACCAAGCACCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAGGAGCCT
66 TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GCCC
* ***
80313937 AGGTT-CCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGT-ATTGAGG
1 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGG
* *
80314000 CTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCTAGGCTCCCGCAC-ATCCAA-GCACC
65 CTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGC-CC
* * * *
80314063 AAGG-TGCC-AGTGGTGCCCGAGGCTCCCACAGGACTAAGGGGCTAGGTGCCGATGGTGCCCGAG
1 -AGGTTGCCGA-TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAG
** * * *
80314126 GCTCCCGCACGATAAATGTCCTAGGTTACCGATGG
64 GCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
80314161 CGTCCAAGGC
Statistics
Matches: 705, Mismatches: 127, Indels: 52
0.80 0.14 0.06
Matches are distributed among these distances:
125 8 0.01
126 218 0.31
127 354 0.50
128 123 0.17
129 2 0.00
ACGTcount: A:0.19, C:0.33, G:0.33, T:0.16
Consensus pattern (127 bp):
AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGC
TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCCC
Found at i:80314150 original size:42 final size:43
Alignment explanation
Indices: 80313173--80314160 Score: 943
Period size: 42 Copynumber: 23.4 Consensus size: 43
80313163 CATCCAACGT
* **
80313173 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * * **
80313216 CCAAGG-TGAC-ATGCTTCTCGAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * *
80313257 CCAAGG-TGCC-AGTGCTGCTCGAGGCTCCCGCAC-ATCCAAGGCA
1 CCTAGGTTGCCGA-TGGTGCCCGAGGCTCCCGCACGA-CCAAGG-G
* *
80313300 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * ** **
80313342 CCGAGGCTGCCGATGGCGTTCGAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * *
80313385 CCAAGG-TGTCGATGGTGCCCGAGGTTCTCGCACGATCAA-GG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * *
80313426 CCCAGGTTGCCGATGGTGCTCGAGGTTCTCGCACGATCAA-GG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
80313468 CCTAGGTTGCCGATGATGCCCGAGGCGCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** *
80313511 CCTAGGTTGCCGATGGAACCCGAGGCTCCCGCAC-ATCTAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * *
80313554 CCTAGG-AGCCAATGGTGGCCGAGGCTCCCGCACGACCAATGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
80313596 CCTAGG-TGCCAATGGT-CCCGAGGCTCTCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
80313637 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* **
80313680 CCT-GGTTGCCGATGGTGCCCGAGGCTCCCGTAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* *
80313722 CCAAGG-TGCCGATGGTGCCTGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
80313764 CCTAAG-TGCCGATGGTGCCCGAGGCTCTCGTACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * ** * *
80313806 CCTAGGTTGCCGATGGTGGCCGAAGCTCCTACATGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* **
80313849 CCTAGG-TGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
80313891 CCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACC-AGGAG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG-G
*
80313934 CCTAGGTT-CCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*** *
80313976 CCTAGGTTGCCGATGGT-ATTGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* **
80314018 CCTAGGTTGCCGATGGTGCCCTAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * *
80314061 CCAAGG-TGCC-AGTGGTGCCCGAGGCTCCCACAGGACTAAGGG
1 CCTAGGTTGCCGA-TGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** * *
80314103 GCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGATAAATGT
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
80314145 CCTAGGTTACCGATGG
1 CCTAGGTTGCCGATGG
80314161 CGTCCAAGGC
Statistics
Matches: 794, Mismatches: 124, Indels: 54
0.82 0.13 0.06
Matches are distributed among these distances:
41 72 0.09
42 458 0.58
43 262 0.33
44 2 0.00
ACGTcount: A:0.19, C:0.33, G:0.32, T:0.16
Consensus pattern (43 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:80314404 original size:24 final size:24
Alignment explanation
Indices: 80314372--80314425 Score: 108
Period size: 24 Copynumber: 2.2 Consensus size: 24
80314362 TTTTGATATT
80314372 CCGGGATGGCTCGCCGGAGCACCG
1 CCGGGATGGCTCGCCGGAGCACCG
80314396 CCGGGATGGCTCGCCGGAGCACCG
1 CCGGGATGGCTCGCCGGAGCACCG
80314420 CCGGGA
1 CCGGGA
80314426 ACCTAACCGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.13, C:0.37, G:0.43, T:0.07
Consensus pattern (24 bp):
CCGGGATGGCTCGCCGGAGCACCG
Found at i:80314915 original size:58 final size:59
Alignment explanation
Indices: 80314818--80314938 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 59
80314808 GGGAGGGACA
* * * *
80314818 GGGACGATTTATTCATTGTTGGGTACCGGATATGCAACGGTATCCGAATCCTACC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
* *
80314876 GGGACGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCCGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
80314935 GGGA
1 GGGA
80314939 TTGGGGAGAG
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 49 0.88
59 7 0.12
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
Found at i:80315000 original size:24 final size:24
Alignment explanation
Indices: 80314972--80315049 Score: 104
Period size: 24 Copynumber: 3.2 Consensus size: 24
80314962 TTTGTGTATC
* *
80314972 CCGGGATGGCA-CGCCGGATCATCG
1 CCGGGATGG-ATCGCCGGAGCACCG
*
80314996 CCGGGATGGATCGTCGGAGCACCG
1 CCGGGATGGATCGCCGGAGCACCG
*
80315020 CCGGGATGGATCGTCGGAGCACCG
1 CCGGGATGGATCGCCGGAGCACCG
80315044 CCGGGA
1 CCGGGA
80315050 ACCTAACCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
23 1 0.02
24 49 0.98
ACGTcount: A:0.17, C:0.31, G:0.41, T:0.12
Consensus pattern (24 bp):
CCGGGATGGATCGCCGGAGCACCG
Found at i:80323819 original size:46 final size:47
Alignment explanation
Indices: 80323713--80323834 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 47
80323703 CGTCTTCGAC
** * *
80323713 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
80323763 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
80323809 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
80323835 CTGTCCTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 34 0.53
50 30 0.47
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:80357796 original size:13 final size:13
Alignment explanation
Indices: 80357775--80357807 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
80357765 GGTTGTTTAT
*
80357775 TAAAATAATTAAC
1 TAAACTAATTAAC
80357788 TAAACTAATTAAC
1 TAAACTAATTAAC
80357801 T-AACTAA
1 TAAACTAA
80357808 ACTAAAGCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.30
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:80360727 original size:6 final size:6
Alignment explanation
Indices: 80360718--80360765 Score: 78
Period size: 6 Copynumber: 7.8 Consensus size: 6
80360708 TTGAAATGAA
*
80360718 AAAAAT AAAAAT AAAAAT AAAAAAT AAAAAT AAAAAT AAAGAT AAAAA
1 AAAAAT AAAAAT AAAAAT -AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
80360766 GATAGGAGGA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
6 33 0.85
7 6 0.15
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:80360765 original size:19 final size:19
Alignment explanation
Indices: 80360717--80360757 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
80360707 ATTGAAATGA
80360717 AAAAAATAAAAATAAAAAT
1 AAAAAATAAAAATAAAAAT
80360736 AAAAAATAAAAATAAAAAT
1 AAAAAATAAAAATAAAAAT
80360755 AAA
1 AAA
80360758 GATAAAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (19 bp):
AAAAAATAAAAATAAAAAT
Found at i:80362634 original size:40 final size:40
Alignment explanation
Indices: 80362541--80362758 Score: 266
Period size: 40 Copynumber: 5.5 Consensus size: 40
80362531 AAGCCAAGTA
* * *
80362541 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
80362579 CCTTCGGGACATAGCCCGGATATAGTAACTCGCGCCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
80362619 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
80362659 CCTTCGGGACTTAGCCCGGATGTACTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
80362699 CCTTCGGGACTTAGCCTGGA-ACTAGTCACTAGTGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
80362740 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
80362759 TTATCATCCA
Statistics
Matches: 159, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
38 12 0.08
39 17 0.11
40 104 0.65
41 23 0.14
42 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:80375180 original size:30 final size:30
Alignment explanation
Indices: 80375121--80375181 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
80375111 ATTCCCGAGC
*
80375121 TTAGGGGAAAAAGTGTAATTATGCAAAAGT
1 TTAGGGGAAAAAGTGTAATTATACAAAAGT
* *
80375151 TTAGGGGCAAAAA-TGTAATTTTACCAAAGT
1 TTAGGGG-AAAAAGTGTAATTATACAAAAGT
80375181 T
1 T
80375182 CATATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.30
Consensus pattern (30 bp):
TTAGGGGAAAAAGTGTAATTATACAAAAGT
Found at i:80396979 original size:6 final size:6
Alignment explanation
Indices: 80396968--80397008 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
80396958 TCCTCTTATC
*
80396968 TTTTTA TTTTTA TTTTTA TTTTTTTA TTTTTA TTTTCA TTT
1 TTTTTA TTTTTA TTTTTA --TTTTTA TTTTTA TTTTTA TTT
80397009 CAATTTTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
6 26 0.81
8 6 0.19
ACGTcount: A:0.15, C:0.02, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:80396991 original size:20 final size:20
Alignment explanation
Indices: 80396963--80397008 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
80396953 TTGAATCCTC
*
80396963 TTATCTTTTTATTTTTATTT
1 TTATTTTTTTATTTTTATTT
80396983 TTATTTTTTTATTTTTATTT
1 TTATTTTTTTATTTTTATTT
*
80397003 TCATTT
1 TTATTT
80397009 CAATTTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.15, C:0.04, G:0.00, T:0.80
Consensus pattern (20 bp):
TTATTTTTTTATTTTTATTT
Found at i:80397001 original size:26 final size:26
Alignment explanation
Indices: 80396968--80397028 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
80396958 TCCTCTTATC
* ** *
80396968 TTTTTATTTTTATTTTTATTTTTTTA
1 TTTTTATTTTCATTTCAATTTTATTA
80396994 TTTTTATTTTCATTTCAATTTTATTA
1 TTTTTATTTTCATTTCAATTTTATTA
80397020 -TTTTATTTT
1 TTTTTATTTT
80397029 GAAAGACATA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
25 9 0.29
26 22 0.71
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (26 bp):
TTTTTATTTTCATTTCAATTTTATTA
Found at i:80404857 original size:22 final size:22
Alignment explanation
Indices: 80404832--80404875 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
80404822 AATTATTAAC
*
80404832 ATAATGAATTTTAATTAATTTT
1 ATAATAAATTTTAATTAATTTT
* *
80404854 ATAATAAATTTTGATTATTTTT
1 ATAATAAATTTTAATTAATTTT
80404876 GATTATTTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (22 bp):
ATAATAAATTTTAATTAATTTT
Found at i:80418338 original size:31 final size:31
Alignment explanation
Indices: 80418300--80418363 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
80418290 CCTTTTCATA
80418300 TTTCATATTGCATAACACTGGGCCGAAGCCT
1 TTTCATATTGCATAACACTGGGCCGAAGCCT
* *
80418331 TTTCATATTTCATATCACTGGGCCGAAGCCT
1 TTTCATATTGCATAACACTGGGCCGAAGCCT
80418362 TT
1 TT
80418364 CGTTTAACGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.34
Consensus pattern (31 bp):
TTTCATATTGCATAACACTGGGCCGAAGCCT
Found at i:80418678 original size:26 final size:26
Alignment explanation
Indices: 80418574--80418730 Score: 182
Period size: 26 Copynumber: 6.3 Consensus size: 26
80418564 CTGGAGGCCT
* * *
80418574 AGCCTTTTTTAAT-AACTTGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
* *
80418598 AGCCCTTTT-GATAAACTGGGGTA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
* *
80418622 AGCCCTTTT-GATAAACTGGGGTA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
*
80418646 AGCCCTTTTCAATTAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
80418672 AGCCCTTTGCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
80418698 AGCCCTTTTCAAGAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
80418724 AGCCCTT
1 AGCCCTT
80418731 CTACACTTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
23 2 0.02
24 50 0.42
25 11 0.09
26 56 0.47
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:80418813 original size:11 final size:11
Alignment explanation
Indices: 80418782--80418857 Score: 56
Period size: 11 Copynumber: 7.5 Consensus size: 11
80418772 TTATGAATAC
80418782 ATCATGTGCAT
1 ATCATGTGCAT
* *
80418793 TTCA--TACAT
1 ATCATGTGCAT
80418802 ATCATGTGCAT
1 ATCATGTGCAT
*
80418813 ATCA--TACAT
1 ATCATGTGCAT
80418822 ATCATGTGCAT
1 ATCATGTGCAT
* * *
80418833 -T-TTATACAT
1 ATCATGTGCAT
80418842 ATCATGTGCAT
1 ATCATGTGCAT
80418853 ATCAT
1 ATCAT
80418858 ATCAATCATA
Statistics
Matches: 47, Mismatches: 12, Indels: 12
0.66 0.17 0.17
Matches are distributed among these distances:
9 20 0.43
10 2 0.04
11 25 0.53
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:80418827 original size:40 final size:40
Alignment explanation
Indices: 80418782--80418866 Score: 145
Period size: 40 Copynumber: 2.1 Consensus size: 40
80418772 TTATGAATAC
80418782 ATCATGTGCATTTCATACATATCATGTGCATATCATA-CA
1 ATCATGTGCATTTCATACATATCATGTGCATATCATATCA
*
80418821 TATCATGTGCATTTTATACATATCATGTGCATATCATATCA
1 -ATCATGTGCATTTCATACATATCATGTGCATATCATATCA
80418862 ATCAT
1 ATCAT
80418867 ATATATCATA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
40 41 0.95
41 2 0.05
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.39
Consensus pattern (40 bp):
ATCATGTGCATTTCATACATATCATGTGCATATCATATCA
Found at i:80418866 original size:20 final size:20
Alignment explanation
Indices: 80418782--80418858 Score: 127
Period size: 20 Copynumber: 3.9 Consensus size: 20
80418772 TTATGAATAC
*
80418782 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
80418802 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
80418822 ATCATGTGCATTTTATACAT
1 ATCATGTGCATATCATACAT
80418842 ATCATGTGCATATCATA
1 ATCATGTGCATATCATA
80418859 TCAATCATAT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.39
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:80418877 original size:9 final size:10
Alignment explanation
Indices: 80418794--80418878 Score: 63
Period size: 9 Copynumber: 8.7 Consensus size: 10
80418784 CATGTGCATT
80418794 TCATA-CATA
1 TCATATCATA
*
80418803 TCATGTGCATA
1 TCATAT-CATA
80418814 TCATA-CATA
1 TCATATCATA
* *
80418823 TCATGTGCATT
1 TCATAT-CATA
*
80418834 TTATA-CATA
1 TCATATCATA
*
80418843 TCATGTGCATA
1 TCATAT-CATA
80418854 TCATATCA-A
1 TCATATCATA
80418863 TCATAT-ATA
1 TCATATCATA
80418872 TCATATC
1 TCATATC
80418879 CCACGTATCA
Statistics
Matches: 58, Mismatches: 10, Indels: 15
0.70 0.12 0.18
Matches are distributed among these distances:
8 1 0.02
9 32 0.55
10 2 0.03
11 23 0.40
ACGTcount: A:0.35, C:0.19, G:0.07, T:0.39
Consensus pattern (10 bp):
TCATATCATA
Found at i:80423395 original size:24 final size:21
Alignment explanation
Indices: 80423345--80423398 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 21
80423335 AAATATAAGT
*
80423345 ACAAATAATATAATTAAAAAC
1 ACAAATAACATAATTAAAAAC
*
80423366 ATAAATAACATAATTCAAAAAATC
1 ACAAATAACATAATT--AAAAA-C
80423390 ACAAATAAC
1 ACAAATAAC
80423399 TGAAAAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 13 0.48
23 5 0.19
24 9 0.33
ACGTcount: A:0.65, C:0.13, G:0.00, T:0.22
Consensus pattern (21 bp):
ACAAATAACATAATTAAAAAC
Found at i:80430890 original size:22 final size:22
Alignment explanation
Indices: 80430842--80430893 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
80430832 AATTTTAACT
* *
80430842 TTATTTTTTTTATTTTGATTGGT
1 TTATTTTTTTTATTTTCATT-GA
80430865 TTATTTTTTTTATTTTTCATT-A
1 TTATTTTTTTTA-TTTTCATTGA
80430887 TTATTTT
1 TTATTTT
80430894 AGAAAAAGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 7 0.27
23 12 0.46
24 7 0.27
ACGTcount: A:0.15, C:0.02, G:0.06, T:0.77
Consensus pattern (22 bp):
TTATTTTTTTTATTTTCATTGA
Found at i:80435202 original size:22 final size:22
Alignment explanation
Indices: 80435174--80435295 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
80435164 TTCCACATCC
80435174 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
80435196 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
80435220 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
80435243 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
80435267 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
80435290 ATCACA
1 ATCACA
80435296 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:80435472 original size:49 final size:47
Alignment explanation
Indices: 80435146--80435601 Score: 659
Period size: 47 Copynumber: 9.6 Consensus size: 47
80435136 CCCTTCGGGA
* * *
80435146 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
80435193 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
80435240 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
80435287 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
80435334 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
80435381 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
80435428 CTTATCACATATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
80435477 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
80435526 CTTATCAAATATATACACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATTGGCCATTCGGC
80435575 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
80435602 TATTCAAATA
Statistics
Matches: 379, Mismatches: 24, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 243 0.64
49 134 0.35
50 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:80442217 original size:21 final size:21
Alignment explanation
Indices: 80442193--80442329 Score: 63
Period size: 21 Copynumber: 6.7 Consensus size: 21
80442183 TTGTATATGC
80442193 CTCATAATTTTTTTGTACTCT
1 CTCATAATTTTTTTGTACTCT
** * * *
80442214 CTCATGGTTTTTTGGTATTCC
1 CTCATAATTTTTTTGTACTCT
* *
80442235 CTCA-AAATTTTTGGTA-TGC-
1 CTCATAATTTTTTTGTACT-CT
** *
80442254 CTTCATAAACTTTTTATACTCT
1 C-TCATAATTTTTTTGTACTCT
* *
80442276 ATCAT-A-TTTTTTGATATTC-
1 CTCATAATTTTTTTG-TACTCT
*
80442295 CATCATAA-ATTTTTGTACTCT
1 C-TCATAATTTTTTTGTACTCT
*
80442316 TTCATAATTTTTTT
1 CTCATAATTTTTTT
80442330 TGTTTGTTCT
Statistics
Matches: 86, Mismatches: 20, Indels: 20
0.68 0.16 0.16
Matches are distributed among these distances:
19 7 0.08
20 32 0.37
21 46 0.53
22 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.07, T:0.53
Consensus pattern (21 bp):
CTCATAATTTTTTTGTACTCT
Found at i:80442285 original size:40 final size:40
Alignment explanation
Indices: 80442240--80442327 Score: 113
Period size: 40 Copynumber: 2.2 Consensus size: 40
80442230 ATTCCCTCAA
* *
80442240 AATTTTTGGTATGCCTTCATAAACTTTTTATACTCTATCAT
1 AATTTTTGATATGCCATCATAAA-TTTTTATACTCTATCAT
* * * *
80442281 ATTTTTTGATATTCCATCATAAATTTTTGTACTCTTTCAT
1 AATTTTTGATATGCCATCATAAATTTTTATACTCTATCAT
80442321 AATTTTT
1 AATTTTT
80442328 TTTGTTTGTT
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 21 0.52
41 19 0.47
ACGTcount: A:0.26, C:0.15, G:0.06, T:0.53
Consensus pattern (40 bp):
AATTTTTGATATGCCATCATAAATTTTTATACTCTATCAT
Found at i:80442288 original size:41 final size:41
Alignment explanation
Indices: 80442242--80442328 Score: 113
Period size: 41 Copynumber: 2.1 Consensus size: 41
80442232 TCCCTCAAAA
* *
80442242 TTTTTGGTATGCCTTCATAAACTTTTTATACTCTATCAT-AT
1 TTTTTGATATGCCATCATAAA-TTTTTATACTCTATCATAAT
* * *
80442283 TTTTTGATATTCCATCATAAATTTTTGTACTCTTTCATAAT
1 TTTTTGATATGCCATCATAAATTTTTATACTCTATCATAAT
80442324 TTTTT
1 TTTTT
80442329 TTGTTTGTTC
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 15 0.38
41 25 0.62
ACGTcount: A:0.24, C:0.15, G:0.06, T:0.55
Consensus pattern (41 bp):
TTTTTGATATGCCATCATAAATTTTTATACTCTATCATAAT
Found at i:80442322 original size:61 final size:62
Alignment explanation
Indices: 80442188--80442309 Score: 158
Period size: 62 Copynumber: 2.0 Consensus size: 62
80442178 TTTTTTTGTA
** * * * * *
80442188 TATGCC-TCATAATTTTTTTGTACTCTCTCATGGTTTTTTGGTATTCCCTCAAAATTTTTGG
1 TATGCCTTCATAAACTTTTTATACTCTATCATGATTTTTTGATATTCCATCAAAATTTTTGG
80442249 TATGCCTTCATAAACTTTTTATACTCTATCAT-ATTTTTTGATATTCCATCATAAATTTTTG
1 TATGCCTTCATAAACTTTTTATACTCTATCATGATTTTTTGATATTCCATCA-AAATTTTTG
80442310 TACTCTTTCA
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
61 22 0.42
62 30 0.58
ACGTcount: A:0.23, C:0.17, G:0.09, T:0.51
Consensus pattern (62 bp):
TATGCCTTCATAAACTTTTTATACTCTATCATGATTTTTTGATATTCCATCAAAATTTTTGG
Found at i:80442328 original size:20 final size:20
Alignment explanation
Indices: 80442194--80442328 Score: 69
Period size: 20 Copynumber: 6.6 Consensus size: 20
80442184 TGTATATGCC
80442194 TCATAATTTTTTTGTACTCTC-
1 TCATAA-TTTTTTGTACTC-CA
** * *
80442215 TCATGGTTTTTTGGTATTCCC
1 TCATAATTTTTT-GTACTCCA
* * *
80442236 TCAAAATTTTTGGTA-TGCCT
1 TCATAATTTTTTGTACT-CCA
* * *
80442256 TCATAAACTTTTTATACTCTA
1 TCAT-AATTTTTTGTACTCCA
*
80442277 TCAT-ATTTTTTGATATTCCA
1 TCATAATTTTTTG-TACTCCA
* **
80442297 TCATAAATTTTTGTACTCTT
1 TCATAATTTTTTGTACTCCA
80442317 TCATAATTTTTT
1 TCATAATTTTTT
80442329 TTGTTTGTTC
Statistics
Matches: 84, Mismatches: 23, Indels: 15
0.69 0.19 0.12
Matches are distributed among these distances:
19 7 0.08
20 39 0.46
21 37 0.44
22 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.07, T:0.53
Consensus pattern (20 bp):
TCATAATTTTTTGTACTCCA
Found at i:80443644 original size:29 final size:29
Alignment explanation
Indices: 80443608--80443664 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
80443598 TTCTTGCTAC
*
80443608 AAAGCTTTTTGTTCCATAAACTGTGCTTT
1 AAAGCTTTTTGTTCCATAAACTATGCTTT
80443637 AAAGCTTTTTGTTCCATAAACTATGCTT
1 AAAGCTTTTTGTTCCATAAACTATGCTT
80443665 CTTGGGCAGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.26, C:0.18, G:0.12, T:0.44
Consensus pattern (29 bp):
AAAGCTTTTTGTTCCATAAACTATGCTTT
Found at i:80447863 original size:24 final size:23
Alignment explanation
Indices: 80447823--80447867 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
80447813 GAACAATAAT
80447823 AATGATAAGAGCAAAAATAAAATA
1 AATGATAAGAGCAAAAA-AAAATA
*
80447847 AATGAATAAGA-CGAAAAAAAA
1 AATG-ATAAGAGCAAAAAAAAA
80447868 GGAAATAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 4 0.21
24 9 0.47
25 6 0.32
ACGTcount: A:0.69, C:0.04, G:0.13, T:0.13
Consensus pattern (23 bp):
AATGATAAGAGCAAAAAAAAATA
Found at i:80448141 original size:3 final size:3
Alignment explanation
Indices: 80448133--80448412 Score: 121
Period size: 3 Copynumber: 90.3 Consensus size: 3
80448123 GGGTAAAAAT
* *
80448133 ATA ATA ATA ATA ATA ATA AT- ATA ATA GTA GTA ATA ATA ATA ATA AGGTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A--TA
* *
80448182 ATAA ATC ATA ATG ATA ATA ATA ATA AT- ATA AGTA ATA AT- ATA AGTAA
1 AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA A-T-A
* * *
80448229 ATA CAGA GAGA AT- ATA TATA ATA A-C ATA ATA ATA ACTA TATA A-A
1 ATA -ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA A-TA -ATA ATA
* * * * *
80448273 ATTA ATTA ACCTA ATA A-C ATG ATG ATA ATA CTA GTA ATA ATA ATA A-A
1 A-TA A-TA A--TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
80448320 GTGA A-A ACA ATA ATA ATA ATA CATTA ATA AGA ATA AAA ACA AT- ATA
1 AT-A ATA ATA ATA ATA ATA ATA -A-TA ATA ATA ATA ATA ATA ATA ATA
* * ** *
80448366 TTT ATA ATA ACG ATAA ATA ATA ATA ACA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
80448412 A
1 A
80448413 GAGGTTTACA
Statistics
Matches: 215, Mismatches: 36, Indels: 52
0.71 0.12 0.17
Matches are distributed among these distances:
2 17 0.08
3 156 0.73
4 31 0.14
5 11 0.05
ACGTcount: A:0.59, C:0.05, G:0.06, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:80450346 original size:87 final size:87
Alignment explanation
Indices: 80450248--80450415 Score: 264
Period size: 87 Copynumber: 1.9 Consensus size: 87
80450238 GGTCTGTAAA
** **
80450248 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATTGTCTTCGATCTATTTCCCTGGTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTATTTCCCTACTGC
*
80450313 TTAGGGTGATAAGATCTGTGAG
66 TTAGGGGGATAAGATCTGTGAG
* *
80450335 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTATTTCCCTACTGC
*
80450400 TTAGGGGGTTAAGATC
66 TTAGGGGGATAAGATC
80450416 CATCACCTTC
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
87 73 1.00
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (87 bp):
TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTATTTCCCTACTGC
TTAGGGGGATAAGATCTGTGAG
Found at i:80450395 original size:44 final size:44
Alignment explanation
Indices: 80450254--80450457 Score: 180
Period size: 44 Copynumber: 4.7 Consensus size: 44
80450244 TAAATTCAAC
* * **
80450254 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATTGTCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGTTTAAGACCCATCATCTTCGAT
* ** * * ** * * *
80450298 CTATTTCCCTGGTGCTTA-GGGTGATAAGATCTGTGA-GTTC-AGC
1 CTGTTTCCCTACTGCTTAGGGGT-TTAAGACCCATCATCTTCGA-T
* *
80450341 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGTTTAAGACCCATCATCTTCGAT
* * *
80450385 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCCATCACCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGTTTAAGACCCATCATCTTCGAT
* *
80450429 CTGTTTCCCTACTACTTAGGGGGTTAAGA
1 CTGTTTCCCTACTGCTTAGGGGTTTAAGA
80450458 TCTGTAAATT
Statistics
Matches: 124, Mismatches: 31, Indels: 10
0.75 0.19 0.06
Matches are distributed among these distances:
42 1 0.01
43 28 0.23
44 94 0.76
45 1 0.01
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (44 bp):
CTGTTTCCCTACTGCTTAGGGGTTTAAGACCCATCATCTTCGAT
Found at i:80450458 original size:44 final size:44
Alignment explanation
Indices: 80450341--80450459 Score: 184
Period size: 44 Copynumber: 2.7 Consensus size: 44
80450331 TGAGTTCAGC
* * ** *
80450341 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCCATCACCTTCGAT
80450385 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCCATCACCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCCATCACCTTCGAT
*
80450429 CTGTTTCCCTACTACTTAGGGGGTTAAGATC
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATC
80450460 TGTAAATTTA
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 69 1.00
ACGTcount: A:0.18, C:0.26, G:0.21, T:0.34
Consensus pattern (44 bp):
CTGTTTCCCTACTGCTTAGGGGGTTAAGATCCATCACCTTCGAT
Found at i:80450492 original size:44 final size:43
Alignment explanation
Indices: 80450128--80450500 Score: 263
Period size: 43 Copynumber: 8.6 Consensus size: 43
80450118 TTCCAGCCTT
* * * *
80450128 TTACCCTACTGCTTAGGGGGTTAATATCTGTAAATTTAGCTTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCATCCTG
* * *
80450171 TTACCCTACTGCTTAGGGTGATAAGATCTGTGAATTCATCCTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCATCCTG
* * * * *
80450214 TTACCCTACTGCTTAGGCGTTTATGGTCTGTAAATTCAACCTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCATCCTG
* * *
80450257 TTACCCTACTGCTTAGGGGTTTAAGGCCCAT-TGT--CTTCGAT-CTA
1 TTACCCTACTGCTTAGGGGGTTAA-G---ATCTGTAAATTC-ATCCTG
* ** * * * * *
80450301 TTTCCCTGGTGCTTAGGGTGATAAGATCTGTGAGTTCAGCCTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCATCCTG
* ** ** **
80450344 TTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGAT-CTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTC-ATCCTG
* ** **
80450388 TTTCCCTACTGCTTAGGGGGTTAAGATCCATCACCTTCGAT-CTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTC-ATCCTG
* * *
80450432 TTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATTTATCCTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCATCCTG
*
80450475 TTACCCTACTGCTTTAGGGGTTTAAG
1 TTACCCTACTGC-TTAGGGGGTTAAG
80450501 GCTTGTGAAT
Statistics
Matches: 259, Mismatches: 58, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
40 2 0.01
41 3 0.01
42 3 0.01
43 136 0.53
44 109 0.42
45 2 0.01
46 3 0.01
47 1 0.00
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.36
Consensus pattern (43 bp):
TTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCATCCTG
Found at i:80450756 original size:3 final size:3
Alignment explanation
Indices: 80450750--80450834 Score: 64
Period size: 3 Copynumber: 27.7 Consensus size: 3
80450740 AGTGGAAAAC
* * * * * *
80450750 AAT AAT AAT ACATT AAT AAG AAT AAA AAC AAT -AT ATT TAT AAT AAC
1 AAT AAT AAT A-A-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
80450796 GAT AAAT AAT AAT AAC AAT AAT AAT AAT AAT AAT AAT AA
1 AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
80450835 GAGGTTTACA
Statistics
Matches: 63, Mismatches: 15, Indels: 8
0.73 0.17 0.09
Matches are distributed among these distances:
2 2 0.03
3 55 0.87
4 4 0.06
5 2 0.03
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:80451161 original size:17 final size:17
Alignment explanation
Indices: 80451126--80451166 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
80451116 AAATCATTAG
*
80451126 AATAAATAATATATAAA
1 AATAAATAATATAAAAA
*
80451143 AATAAATAA-ATAAAGA
1 AATAAATAATATAAAAA
80451159 AA-AAATAA
1 AATAAATAA
80451167 AAGAATTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 6 0.27
16 7 0.32
17 9 0.41
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (17 bp):
AATAAATAATATAAAAA
Found at i:80459652 original size:22 final size:22
Alignment explanation
Indices: 80459608--80459652 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
80459598 TGCAGCATTG
* *
80459608 TTTTAAGTTCTTCTATCTTCTC
1 TTTTAAGTTCTTCGATCTACTC
80459630 TTTTAA-TTCTTCGATTCTACTC
1 TTTTAAGTTCTTCGA-TCTACTC
80459652 T
1 T
80459653 GACTAGCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.16, C:0.22, G:0.04, T:0.58
Consensus pattern (22 bp):
TTTTAAGTTCTTCGATCTACTC
Found at i:80471920 original size:3 final size:3
Alignment explanation
Indices: 80471867--80471949 Score: 57
Period size: 3 Copynumber: 28.0 Consensus size: 3
80471857 TATTAATATG
* ** *
80471867 AAT AAT AA- AAT AAT GAT AAT -AT GTT AAT AA- ATAT AAT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT
* *
80471910 ATT AAT AAT AAT AAT AAT AGT AA- ATAT AAT AAT AAAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT -AAT AAT
80471950 GTTACAAGTA
Statistics
Matches: 62, Mismatches: 11, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
2 6 0.10
3 51 0.82
4 5 0.08
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:80471938 original size:12 final size:12
Alignment explanation
Indices: 80471861--80471947 Score: 74
Period size: 12 Copynumber: 7.3 Consensus size: 12
80471851 TATATATATT
80471861 AATATGAATAATA
1 AATAT-AATAATA
*
80471874 AA-ATAATGAT-
1 AATATAATAATA
**
80471884 AATATGTTAATA
1 AATATAATAATA
*
80471896 AATATAATAGT-
1 AATATAATAATA
80471907 AATATTAATAAT-
1 AATA-TAATAATA
*
80471919 AATAATAATAGTA
1 AAT-ATAATAATA
80471932 AATATAATAATA
1 AATATAATAATA
80471944 AATA
1 AATA
80471948 ATGTTACAAG
Statistics
Matches: 59, Mismatches: 10, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
10 2 0.03
11 14 0.24
12 37 0.63
13 6 0.10
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (12 bp):
AATATAATAATA
Found at i:80471938 original size:18 final size:17
Alignment explanation
Indices: 80471893--80471948 Score: 69
Period size: 18 Copynumber: 3.2 Consensus size: 17
80471883 TAATATGTTA
*
80471893 ATAAATATAATAGTAAT
1 ATAAATATAATAATAAT
*
80471910 ATTAATAATAATAATAAT
1 ATAAAT-ATAATAATAAT
80471928 AGTAAATATAATAATAA-
1 A-TAAATATAATAATAAT
80471945 ATAA
1 ATAA
80471949 TGTTACAAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
16 3 0.09
17 6 0.18
18 21 0.62
19 4 0.12
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (17 bp):
ATAAATATAATAATAAT
Found at i:80473364 original size:17 final size:18
Alignment explanation
Indices: 80473305--80473378 Score: 62
Period size: 18 Copynumber: 4.1 Consensus size: 18
80473295 ATGTATATAT
*
80473305 ATAAATAAATAAATAATAT
1 ATAAATAAATAAATAA-AA
* * *
80473324 ATAATATAAA-ACCATTAGA
1 ATAA-ATAAATA-AATAAAA
*
80473343 ATAAAT-AATATATAAAA
1 ATAAATAAATAAATAAAA
80473360 ATAAATAAATAAATAAAA
1 ATAAATAAATAAATAAAA
80473378 A
1 A
80473379 ATATAAAAGA
Statistics
Matches: 43, Mismatches: 8, Indels: 9
0.72 0.13 0.15
Matches are distributed among these distances:
17 12 0.28
18 14 0.33
19 9 0.21
20 8 0.19
ACGTcount: A:0.69, C:0.03, G:0.01, T:0.27
Consensus pattern (18 bp):
ATAAATAAATAAATAAAA
Found at i:80473370 original size:25 final size:27
Alignment explanation
Indices: 80473299--80473375 Score: 88
Period size: 30 Copynumber: 2.8 Consensus size: 27
80473289 ATATGTATGT
80473299 ATATATATAAATAAATAAATAATATATA
1 ATATA-ATAAATAAATAAATAATATATA
80473327 ATATAA-AACCATTAGAATAAATAATATATA
1 ATATAATAA--A-TA-AATAAATAATATATA
80473357 A-A-AATAAATAAATAAATAA
1 ATATAATAAATAAATAAATAA
80473376 AAAATATAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
25 9 0.20
26 4 0.09
27 2 0.05
28 8 0.18
29 5 0.11
30 16 0.36
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (27 bp):
ATATAATAAATAAATAAATAATATATA
Found at i:80473384 original size:17 final size:20
Alignment explanation
Indices: 80473342--80473385 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
80473332 AAACCATTAG
80473342 AATAAATAATATATAAAAAT
1 AATAAATAATATATAAAAAT
80473362 AAATAAATAA-ATA-AAAAAT
1 -AATAAATAATATATAAAAAT
80473381 -ATAAA
1 AATAAA
80473386 AGAATTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.22
19 6 0.26
20 3 0.13
21 9 0.39
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (20 bp):
AATAAATAATATATAAAAAT
Found at i:80478689 original size:43 final size:44
Alignment explanation
Indices: 80478623--80478919 Score: 312
Period size: 43 Copynumber: 7.0 Consensus size: 44
80478613 ATATCGTACA
80478623 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAATCACATATCG
1 ATGCCAACTGTCCCAGACAG-GGTCTTACATGTAATCACATATCG
* * *
80478666 ATACC-ACTATCCCAGACAGGGTCTTACATG-AATCAAATA-CG
1 ATGCCAACTGTCCCAGACAGGGTCTTACATGTAATCACATATCG
* * *
80478707 ATGCCGA-TGTACCAGACATGGTCTTACATGTAATCACATATCG
1 ATGCCAACTGTCCCAGACAGGGTCTTACATGTAATCACATATCG
*
80478750 ATGCCAAC-GTCCCAGAC-GTGGTCTTACAAGTAATCACATATCG
1 ATGCCAACTGTCCCAGACAG-GGTCTTACATGTAATCACATATCG
* ** *
80478793 ATGCC-ATTGTCCCAGACAGGGTCTTACACATAATCACATACCG
1 ATGCCAACTGTCCCAGACAGGGTCTTACATGTAATCACATATCG
* * * ***
80478836 ATGCCAA-TGCCCCAAACATGGTCTTATGCGTAATCACATATCG
1 ATGCCAACTGTCCCAGACAGGGTCTTACATGTAATCACATATCG
* *
80478879 TTGCCAAC-ATCCCAGAC-GTGGTCTTACATGTAATCACATAT
1 ATGCCAACTGTCCCAGACAG-GGTCTTACATGTAATCACATAT
80478920 TGGAATCGCA
Statistics
Matches: 211, Mismatches: 31, Indels: 24
0.79 0.12 0.09
Matches are distributed among these distances:
41 26 0.12
42 20 0.09
43 162 0.77
44 3 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (44 bp):
ATGCCAACTGTCCCAGACAGGGTCTTACATGTAATCACATATCG
Found at i:80478904 original size:129 final size:127
Alignment explanation
Indices: 80478623--80478919 Score: 434
Period size: 129 Copynumber: 2.3 Consensus size: 127
80478613 ATATCGTACA
80478623 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCGATACCACTATCCCAGACAGGGT
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCGATACCACTATCCCAGACAGGGT
* * * *
80478688 CTTACATGAATCAAATACGATGCCGATGTACCAGACATGGTCTTACATGTAATCACATATCG
66 CTTACATGAATCAAATACGATGCCAATGCACCAAACATGGTCTTACACGTAATCACATATCG
* * * *
80478750 ATGCCAACGTCCCAGACGTGGTCTTACAAGTAATCACATATCGATGCCATTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCGATACCACTATCCCAGACAGGGT
* * **
80478815 CTTACACAT-AATCACATACCGATGCCAATGCCCCAAACATGGTCTTATGCGTAATCACATATCG
66 CTT--ACATGAATCAAATA-CGATGCCAATGCACCAAACATGGTCTTACACGTAATCACATATCG
* *
80478879 TTGCCAACATCCCAGACGTGGTCTTACATGTAATCACATAT
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATAT
80478920 TGGAATCGCA
Statistics
Matches: 152, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
127 64 0.42
128 8 0.05
129 80 0.53
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (127 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCGATACCACTATCCCAGACAGGGT
CTTACATGAATCAAATACGATGCCAATGCACCAAACATGGTCTTACACGTAATCACATATCG
Found at i:80486630 original size:40 final size:40
Alignment explanation
Indices: 80486426--80486630 Score: 263
Period size: 40 Copynumber: 5.1 Consensus size: 40
80486416 CGGAATTTAA
** *
80486426 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
80486466 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80486506 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80486546 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
80486586 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
80486626 CCGGA
1 CCGGA
80486631 CATCATTCAA
Statistics
Matches: 147, Mismatches: 14, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 4 0.03
40 132 0.90
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:80496133 original size:29 final size:29
Alignment explanation
Indices: 80496069--80496134 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
80496059 ATTTCATTTA
* * *
80496069 TTTCACAACTTAATCCCTTAATTTACACT
1 TTTCTCAATTTAATCCCTTAATATACACT
* *
80496098 TTTCTCAATTTAATCCC-TAATATGCATT
1 TTTCTCAATTTAATCCCTTAATATACACT
80496126 TTTACTCAA
1 TTT-CTCAA
80496135 AATCACGTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 11 0.35
29 20 0.65
ACGTcount: A:0.30, C:0.24, G:0.02, T:0.44
Consensus pattern (29 bp):
TTTCTCAATTTAATCCCTTAATATACACT
Found at i:80498841 original size:23 final size:23
Alignment explanation
Indices: 80498812--80498877 Score: 89
Period size: 23 Copynumber: 2.9 Consensus size: 23
80498802 AAGATTACTA
*
80498812 TTCAGCTCGAA-AGAGCTTGCCGT
1 TTCAGCTC-AATAGAGCTTACCGT
* *
80498835 TTTAGCTCAATAGAGCTTATCGT
1 TTCAGCTCAATAGAGCTTACCGT
80498858 TTCAGCTCAATAGAGCTTAC
1 TTCAGCTCAATAGAGCTTAC
80498878 TATTCATTAG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
22 2 0.05
23 35 0.95
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.32
Consensus pattern (23 bp):
TTCAGCTCAATAGAGCTTACCGT
Found at i:80498878 original size:68 final size:69
Alignment explanation
Indices: 80498753--80498883 Score: 167
Period size: 68 Copynumber: 1.9 Consensus size: 69
80498743 ATCTGCTTGT
* * * **
80498753 AAGAGCTTACTGTTTTCAGCTCATTGGAGCTTACCGTTTCAGCTTGTATAAGATTACTATTCAGC
1 AAGAGCTTACCGTTTTCAGCTCAATAGAGCTTACCGTTTCAGCTTCAATAAGATTACTATTCAGC
80498818 TCGA
66 TCGA
* * *
80498822 AAGAGCTTGCCGTTTT-AGCTCAATAGAGCTTATCGTTTCAGC-TCAATAGAGCTTACTATTCA
1 AAGAGCTTACCGTTTTCAGCTCAATAGAGCTTACCGTTTCAGCTTCAATA-AGATTACTATTCA
80498884 TTAGCTCAAG
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
67 4 0.08
68 35 0.66
69 14 0.26
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (69 bp):
AAGAGCTTACCGTTTTCAGCTCAATAGAGCTTACCGTTTCAGCTTCAATAAGATTACTATTCAGC
TCGA
Found at i:80501174 original size:16 final size:17
Alignment explanation
Indices: 80501149--80501194 Score: 71
Period size: 16 Copynumber: 2.9 Consensus size: 17
80501139 ACTAGTCATG
80501149 TAGC-GTGAGCAACATA
1 TAGCAGTGAGCAACATA
80501165 TAG-AGTGAGCAACATA
1 TAGCAGTGAGCAACATA
80501181 TAGCA-TGAGCAACA
1 TAGCAGTGAGCAACA
80501195 ACTATCAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
16 27 0.96
17 1 0.04
ACGTcount: A:0.41, C:0.17, G:0.24, T:0.17
Consensus pattern (17 bp):
TAGCAGTGAGCAACATA
Found at i:80505002 original size:26 final size:26
Alignment explanation
Indices: 80504973--80505024 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
80504963 CAACTACACA
*
80504973 TAAGCAACCAAAACTAATACAAGGCT
1 TAAGCAACCAAAACCAATACAAGGCT
80504999 TAAGCAACCAAAACCAATACAAGGCT
1 TAAGCAACCAAAACCAATACAAGGCT
80505025 ATCTTATGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.50, C:0.25, G:0.12, T:0.13
Consensus pattern (26 bp):
TAAGCAACCAAAACCAATACAAGGCT
Found at i:80505788 original size:46 final size:45
Alignment explanation
Indices: 80505728--80505891 Score: 177
Period size: 46 Copynumber: 3.5 Consensus size: 45
80505718 ATAGTCGACA
*
80505728 CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCCGATG
1 CATGTCCCAAACATGTCTTACACTGGCTT-CGTCTCGAGGCCGATG
* * * * *
80505774 CATGTCCTAAACATGTCTTACACTAGCACTCGTCTCAATGCCGATG
1 CATGTCCCAAACATGTCTTACACTGGC-TTCGTCTCGAGGCCGATG
* * *
80505820 CCATGTCCCAAACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATG
1 -CATGTCCCAAACAT-GTCTTACACTGGCT-TCGT-CTCGAGGCCGATG
*
80505868 CATGTCTCAAACATGTCTTACACT
1 CATGTCCCAAACATGTCTTACACT
80505892 AGGTCACACA
Statistics
Matches: 98, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
46 48 0.49
47 27 0.28
48 22 0.22
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (45 bp):
CATGTCCCAAACATGTCTTACACTGGCTTCGTCTCGAGGCCGATG
Done.