Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 248 of 290
Found at i:80510263 original size:45 final size:44
Alignment explanation
Indices: 80510212--80510377 Score: 246
Period size: 45 Copynumber: 3.7 Consensus size: 44
80510202 TTGAGTGACA
80510212 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGACGTTGAT
1 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCG-CGTTGAT
80510257 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCG-GTGTGAT
1 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGCGT-TGAT
80510301 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGCGTTGAT
1 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATC-GCGTTGAT
* * * *
80510346 TATGAACTAGTATAAGA-CATTGTTGGACATGG
1 TGTGAGCCAGTGTAAGACCA-TGTTGGACATGG
80510378 GGCATGGCAT
Statistics
Matches: 113, Mismatches: 4, Indels: 8
0.90 0.03 0.06
Matches are distributed among these distances:
43 2 0.02
44 42 0.37
45 67 0.59
46 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (44 bp):
TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGCGTTGAT
Found at i:80510312 original size:89 final size:89
Alignment explanation
Indices: 80510212--80510377 Score: 271
Period size: 89 Copynumber: 1.9 Consensus size: 89
80510202 TTGAGTGACA
* * *
80510212 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGACGTTGATTGTGAGCCAGTGTAAGACCA
1 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGACGTTGATTATGAACCAGTATAAGA-CA
80510277 -TGTTGGACATGGCATCGGTGTGAT
65 TTGTTGGACATGGCATCGGTGTGAT
* *
80510301 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGCGTTGATTATGAACTAGTATAAGACAT
1 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGACGTTGATTATGAACCAGTATAAGACAT
80510366 TGTTGGACATGG
66 TGTTGGACATGG
80510378 GGCATGGCAT
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
88 2 0.03
89 69 0.97
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (89 bp):
TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGACGTTGATTATGAACCAGTATAAGACAT
TGTTGGACATGGCATCGGTGTGAT
Found at i:80521718 original size:43 final size:43
Alignment explanation
Indices: 80521666--80521777 Score: 136
Period size: 43 Copynumber: 2.6 Consensus size: 43
80521656 ATATATCGAC
* *
80521666 GCCACTGTCCCAGACATGGGCTTACAAAAAATCACAATACG-AT
1 GCCAATGTCCCAGACATGGTCTTACAAAAAATCACAATA-GAAT
* * * * *
80521709 GCCAATGTCCAAGACATGTTCTTGCACATAATCACAATAGAAT
1 GCCAATGTCCCAGACATGGTCTTACAAAAAATCACAATAGAAT
*
80521752 GCCAATGTCCCAGACATCGTCTTACA
1 GCCAATGTCCCAGACATGGTCTTACA
80521778 TGTAATCACA
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 1 0.02
43 56 0.98
ACGTcount: A:0.35, C:0.28, G:0.15, T:0.22
Consensus pattern (43 bp):
GCCAATGTCCCAGACATGGTCTTACAAAAAATCACAATAGAAT
Found at i:80521952 original size:47 final size:47
Alignment explanation
Indices: 80521883--80522019 Score: 256
Period size: 47 Copynumber: 2.9 Consensus size: 47
80521873 TTCTTGCTCA
*
80521883 TATTTGCTCGTTCGACATTCATAGCAATTCAATGATAATAAAACATT
1 TATTTGCTCGTTCAACATTCATAGCAATTCAATGATAATAAAACATT
80521930 TATTTGCTCGTTCAACATTCATAGCAATTCAATGATAATAAAACATT
1 TATTTGCTCGTTCAACATTCATAGCAATTCAATGATAATAAAACATT
*
80521977 TATTTGTTCGTTCAACATTCATAGCAATTCAATGATAATAAAA
1 TATTTGCTCGTTCAACATTCATAGCAATTCAATGATAATAAAA
80522020 TATATATAAT
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 88 1.00
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.36
Consensus pattern (47 bp):
TATTTGCTCGTTCAACATTCATAGCAATTCAATGATAATAAAACATT
Found at i:80525786 original size:19 final size:19
Alignment explanation
Indices: 80525762--80525850 Score: 157
Period size: 19 Copynumber: 4.8 Consensus size: 19
80525752 ATAATCTTTA
80525762 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
80525781 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
80525800 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
80525817 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
80525835 ATGATATGCAATCTTA
1 ATGATATGCAATCTTA
80525851 TAAGATATAA
Statistics
Matches: 67, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 35 0.52
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:80525833 original size:35 final size:37
Alignment explanation
Indices: 80525762--80525850 Score: 146
Period size: 35 Copynumber: 2.4 Consensus size: 37
80525752 ATAATCTTTA
80525762 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
80525800 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
80525835 ATGATATGCAATCTTA
1 ATGATA-GCAATCTTA
80525851 TAAGATATAA
Statistics
Matches: 49, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
35 19 0.39
36 16 0.33
37 8 0.16
38 6 0.12
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:80526166 original size:17 final size:17
Alignment explanation
Indices: 80526142--80526176 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
80526132 TGTTTCCCAG
*
80526142 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
80526160 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
80526177 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:80530736 original size:46 final size:46
Alignment explanation
Indices: 80530564--80530736 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
80530554 AACCCGCCCC
** * *
80530564 TAAGTGAACTCAAACTCAACTCAACGAGCTCGGGCATTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
80530610 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACATCCA
* * *
80530658 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
80530703 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
80530737 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 59 0.54
47 29 0.27
48 2 0.02
49 2 0.02
50 5 0.05
51 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
Found at i:80531178 original size:30 final size:30
Alignment explanation
Indices: 80531144--80531203 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
80531134 ATTTAATACG
80531144 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
80531174 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
80531204 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:80538200 original size:93 final size:93
Alignment explanation
Indices: 80538093--80538263 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
80538083 CGCCCTAAGT
* *
80538093 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80538158 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
80538186 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80538251 CGAGTTCGGATGC
66 CGAGTTCGGATGC
80538264 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:80538260 original size:46 final size:46
Alignment explanation
Indices: 80538088--80538260 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
80538078 TAACCCGCCC
* * *
80538088 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
80538134 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
80538182 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
80538227 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
80538261 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:80538704 original size:31 final size:30
Alignment explanation
Indices: 80538669--80538729 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
80538659 GCATTTTACG
80538669 AACTTTGGAAAAAATTACACTTTTGCCCCTA
1 AACTTTGG-AAAAATTACACTTTTGCCCCTA
* * *
80538700 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
80538730 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 20 0.74
31 7 0.26
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:80545471 original size:44 final size:42
Alignment explanation
Indices: 80545378--80545527 Score: 200
Period size: 44 Copynumber: 3.6 Consensus size: 42
80545368 TACTCGAAGG
*
80545378 ATATCCGGGCTAAGTCCCCGAAGGC-TTTGTTGCTAAGCGACT
1 ATATCCGGGCTAAGT-CCCGAAGGCTTTTGTAGCTAAGCGACT
80545420 ATATCCGGGCTAAGTCCCGAAGGCTTTTTGCTAGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGC-TTTTG-TAGCTAAGCGACT
* * *
80545464 ACATCCGGACTAAGAT-CCGAAGGCATTTGT-GCT-AGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTAGCTAAGCGACT
80545504 ATATCCGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
80545528 ATTTATGCTA
Statistics
Matches: 97, Mismatches: 6, Indels: 12
0.84 0.05 0.10
Matches are distributed among these distances:
39 1 0.01
40 27 0.28
41 12 0.12
42 16 0.16
43 8 0.08
44 32 0.33
45 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (42 bp):
ATATCCGGGCTAAGTCCCGAAGGCTTTTGTAGCTAAGCGACT
Found at i:80545517 original size:40 final size:42
Alignment explanation
Indices: 80545378--80545531 Score: 208
Period size: 40 Copynumber: 3.7 Consensus size: 42
80545368 TACTCGAAGG
*
80545378 ATATCCGGGCTAAGTCCCCGAAGGC-TTTGTTGCTAAGCGACT
1 ATATCCGGGCTAAGT-CCCGAAGGCATTTGCTGCTAAGCGACT
*
80545420 ATATCCGGGCTAAGTCCCGAAGGCTTTTTGCTAGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGC-ATTTGCT-GCTAAGCGACT
* *
80545464 ACATCCGGACTAAGAT-CCGAAGGCATTTG-TGCT-AGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGCTGCTAAGCGACT
80545504 ATATCCGGGCTAAGTCCCGAAGGCATTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTT
80545532 ATGCTAGTGA
Statistics
Matches: 101, Mismatches: 6, Indels: 12
0.85 0.05 0.10
Matches are distributed among these distances:
39 1 0.01
40 31 0.31
41 12 0.12
42 16 0.16
43 9 0.09
44 31 0.31
45 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.25
Consensus pattern (42 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGCTGCTAAGCGACT
Found at i:80553500 original size:39 final size:39
Alignment explanation
Indices: 80553388--80553519 Score: 158
Period size: 39 Copynumber: 3.4 Consensus size: 39
80553378 TACGCGAACG
*
80553388 ATATCCGGGCTAAGTCCCGAGGCTTTTGTGCTAAGC-ACT
1 ATATCCGGGCTAAGTCCCGAGGCATTTGTGCT-AGCGACT
* * **
80553427 ACATCCGGACTAAGATCCAAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAGGCATTTGTGCTAGCGACT
* * *
80553467 ATATCCGGGCTAAGTCCCGAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAGGCATTTGTGCTAGCGACT
*
80553506 ATATCCGGGTTAAG
1 ATATCCGGGCTAAG
80553520 ACCGCGAAGG
Statistics
Matches: 78, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 48 0.62
40 30 0.38
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAGGCATTTGTGCTAGCGACT
Found at i:80556128 original size:27 final size:27
Alignment explanation
Indices: 80556098--80556186 Score: 142
Period size: 27 Copynumber: 3.3 Consensus size: 27
80556088 ATGGTGACTT
* *
80556098 AAATATCCCTATAGGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
*
80556125 AAATACCCCCATAGGATAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
*
80556152 AAATACCCCCATAGGGTAAAATGACCA
1 AAATACCCCCATAGGGTAAAATGACCG
80556179 AAATACCC
1 AAATACCC
80556187 TTATAAAGTA
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.44, C:0.25, G:0.15, T:0.17
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATGACCG
Found at i:80556197 original size:27 final size:27
Alignment explanation
Indices: 80556098--80556200 Score: 118
Period size: 27 Copynumber: 3.8 Consensus size: 27
80556088 ATGGTGACTT
* * *
80556098 AAATATCCCTATAGGGTAAAATGACCG
1 AAATACCCCCATAAGGTAAAATGACCG
80556125 AAATACCCCCAT-AGGATAAAATGACCG
1 AAATACCCCCATAAGG-TAAAATGACCG
* *
80556152 AAATACCCCCATAGGGTAAAATGACCA
1 AAATACCCCCATAAGGTAAAATGACCG
** *
80556179 AAATACCCTTATAAAGTAAAAT
1 AAATACCCCCATAAGGTAAAAT
80556201 AACTATAATA
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 2 0.03
27 61 0.94
28 2 0.03
ACGTcount: A:0.46, C:0.21, G:0.14, T:0.19
Consensus pattern (27 bp):
AAATACCCCCATAAGGTAAAATGACCG
Found at i:80556210 original size:27 final size:27
Alignment explanation
Indices: 80556180--80556242 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 27
80556170 AAATGACCAA
80556180 AATACCCTTATAA-AGTAAAATAACTAT
1 AATACCCTTATAAGA-TAAAATAACTAT
* * *
80556207 AATACTCC-TGTAGGATAAAATAACTGT
1 AATAC-CCTTATAAGATAAAATAACTAT
80556234 AATACCCTT
1 AATACCCTT
80556243 GTAGGGTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
26 2 0.07
27 25 0.83
28 3 0.10
ACGTcount: A:0.44, C:0.17, G:0.08, T:0.30
Consensus pattern (27 bp):
AATACCCTTATAAGATAAAATAACTAT
Found at i:80556265 original size:26 final size:26
Alignment explanation
Indices: 80556194--80556280 Score: 104
Period size: 27 Copynumber: 3.3 Consensus size: 26
80556184 CCCTTATAAA
*
80556194 GTAAAATAACTATAATACTCCTGTAGG
1 GTAAAATAACTGTAATAC-CCTGTAGG
*
80556221 ATAAAATAACTGTAATACCCTTGTAGG
1 GTAAAATAACTGTAATACCC-TGTAGG
* *
80556248 GTAAAA-GACTGTAATACCCCTGTAAG
1 GTAAAATAACTGTAATA-CCCTGTAGG
80556274 GTAAAAT
1 GTAAAAT
80556281 GATTGATTTG
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
26 22 0.42
27 30 0.58
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (26 bp):
GTAAAATAACTGTAATACCCTGTAGG
Found at i:80557840 original size:29 final size:24
Alignment explanation
Indices: 80557785--80557835 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
80557775 AACACATAGC
80557785 AAACATTTTTAGATTAAATTAAAG
1 AAACATTTTTAGATTAAATTAAAG
80557809 AAACATTTTTAGATTAAATTAAAG
1 AAACATTTTTAGATTAAATTAAAG
80557833 AAA
1 AAA
80557836 GGAAAGATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.53, C:0.04, G:0.08, T:0.35
Consensus pattern (24 bp):
AAACATTTTTAGATTAAATTAAAG
Found at i:80569231 original size:56 final size:56
Alignment explanation
Indices: 80569170--80569303 Score: 202
Period size: 54 Copynumber: 2.4 Consensus size: 56
80569160 ACCATGGCTT
*
80569170 CGATATATGTGTGCGAGTAAGACC-TCGTTTTATATGTTGGCATCAATATGTGACTC
1 CGATATATGTGTGCGAGTAAGACCAT-GTTTTATACGTTGGCATCAATATGTGACTC
* *
80569226 CGATATA--TGTGCGAGTAAGTCCATGTTTTATACGTTGGCATCGATATGTGACTC
1 CGATATATGTGTGCGAGTAAGACCATGTTTTATACGTTGGCATCAATATGTGACTC
*
80569280 TGATATATGTGTGCGAGTAAGACC
1 CGATATATGTGTGCGAGTAAGACC
80569304 CTGTCTGGGA
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
54 48 0.69
55 1 0.01
56 21 0.30
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (56 bp):
CGATATATGTGTGCGAGTAAGACCATGTTTTATACGTTGGCATCAATATGTGACTC
Found at i:80578430 original size:31 final size:31
Alignment explanation
Indices: 80578390--80578458 Score: 129
Period size: 31 Copynumber: 2.2 Consensus size: 31
80578380 ATGAAATTTC
80578390 TAATCAAGCATACATTCTCATCCTAGACCTCA
1 TAAT-AAGCATACATTCTCATCCTAGACCTCA
80578422 TAATAAGCATACATTCTCATCCTAGACCTCA
1 TAATAAGCATACATTCTCATCCTAGACCTCA
80578453 TAATAA
1 TAATAA
80578459 TCATGAAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 33 0.89
32 4 0.11
ACGTcount: A:0.38, C:0.28, G:0.06, T:0.29
Consensus pattern (31 bp):
TAATAAGCATACATTCTCATCCTAGACCTCA
Found at i:80585756 original size:42 final size:42
Alignment explanation
Indices: 80585693--80585774 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
80585683 TGCCACACAA
80585693 GCGTGTGGTCGCCCGTATGGTAGG-CGATGTGCCCTAACACTG
1 GCGTGTGGTCGCCCGTATGGTAGGTC-ATGTGCCCTAACACTG
* *
80585735 GCGTGTGGTTGCCC-TCGTGGTAGGTCATGTGCCCTAACAC
1 GCGTGTGGTCGCCCGT-ATGGTAGGTCATGTGCCCTAACAC
80585775 GAGTGTGTGA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
41 1 0.03
42 34 0.94
43 1 0.03
ACGTcount: A:0.13, C:0.27, G:0.34, T:0.26
Consensus pattern (42 bp):
GCGTGTGGTCGCCCGTATGGTAGGTCATGTGCCCTAACACTG
Found at i:80592332 original size:45 final size:45
Alignment explanation
Indices: 80592275--80592429 Score: 186
Period size: 45 Copynumber: 3.4 Consensus size: 45
80592265 GACTCACCAT
* * * * *
80592275 AGCTCGTCTGAGCTTACTGTTCAGCTCGATAGATCTCACCGCTTC
1 AGCTCGTATGAGCTTACTGTTTAGCTCGATAGAGCTTACCGTTTC
** * *
80592320 AGCTCGTATGAGCTTACCATTTTGCTCGATAGAGCTTACCGTTTT
1 AGCTCGTATGAGCTTACTGTTTAGCTCGATAGAGCTTACCGTTTC
* *
80592365 AGCTCGTATGAGCTTATTGTTTAGCTCGATAGAGCTTACCATTTC
1 AGCTCGTATGAGCTTACTGTTTAGCTCGATAGAGCTTACCGTTTC
*
80592410 AGCTC-AATAGAGCTTACTGT
1 AGCTCGTAT-GAGCTTACTGT
80592430 CCATCAGCTC
Statistics
Matches: 92, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
44 2 0.02
45 90 0.98
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (45 bp):
AGCTCGTATGAGCTTACTGTTTAGCTCGATAGAGCTTACCGTTTC
Found at i:80592419 original size:23 final size:23
Alignment explanation
Indices: 80592284--80592426 Score: 134
Period size: 23 Copynumber: 6.3 Consensus size: 23
80592274 TAGCTCGTCT
*
80592284 GAGCTTACTG-TTCAGCTCGATA
1 GAGCTTACCGTTTCAGCTCGATA
* * *
80592306 GATCTCACCGCTTCAGCTCG-TA
1 GAGCTTACCGTTTCAGCTCGATA
* *
80592328 TGAGCTTACCATTT-TGCTCGATA
1 -GAGCTTACCGTTTCAGCTCGATA
*
80592351 GAGCTTACCGTTTTAGCTCG-TA
1 GAGCTTACCGTTTCAGCTCGATA
**
80592373 TGAGCTTATTGTTT-AGCTCGATA
1 -GAGCTTACCGTTTCAGCTCGATA
* *
80592396 GAGCTTACCATTTCAGCTCAATA
1 GAGCTTACCGTTTCAGCTCGATA
80592419 GAGCTTAC
1 GAGCTTAC
80592427 TGTCCATCAG
Statistics
Matches: 98, Mismatches: 16, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
22 44 0.45
23 54 0.55
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (23 bp):
GAGCTTACCGTTTCAGCTCGATA
Found at i:80596230 original size:17 final size:18
Alignment explanation
Indices: 80596202--80596235 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
80596192 TTGGAGAGAA
80596202 GAGGGAATGATGAATGAT
1 GAGGGAATGATGAATGAT
80596220 GAGGG-ATGATGAATGA
1 GAGGGAATGATGAATGA
80596236 GGGAATGAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.38, C:0.00, G:0.41, T:0.21
Consensus pattern (18 bp):
GAGGGAATGATGAATGAT
Found at i:80596906 original size:31 final size:31
Alignment explanation
Indices: 80596871--80596933 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
80596861 CATTAATTTA
*
80596871 TTAAACAATTACTTAGTTTTAATAACAAATT
1 TTAAACAATTACTTAATTTTAATAACAAATT
*
80596902 TTAAACAATTACTTAATTTTAATAACGAATT
1 TTAAACAATTACTTAATTTTAATAACAAATT
80596933 T
1 T
80596934 AAGTAAAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.44, C:0.10, G:0.03, T:0.43
Consensus pattern (31 bp):
TTAAACAATTACTTAATTTTAATAACAAATT
Found at i:80599753 original size:31 final size:31
Alignment explanation
Indices: 80599718--80599780 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
80599708 ACATTTGGCC
80599718 ATATCATAATGACACATACACAAAATGACTA
1 ATATCATAATGACACATACACAAAATGACTA
**
80599749 ATATCATAATGACATTTACACAAAATGACTA
1 ATATCATAATGACACATACACAAAATGACTA
80599780 A
1 A
80599781 GTCCCTATAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.51, C:0.17, G:0.06, T:0.25
Consensus pattern (31 bp):
ATATCATAATGACACATACACAAAATGACTA
Found at i:80600981 original size:25 final size:24
Alignment explanation
Indices: 80600953--80601011 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
80600943 CCAGACGACC
*
80600953 AATCATATAACTCATGATAATGATT
1 AATCATATAACTCATCATAATGA-T
* * *
80600978 AATCACATAATTCTTCATAATGAT
1 AATCATATAACTCATCATAATGAT
*
80601002 AATAATATAA
1 AATCATATAA
80601012 TAATAAAGAT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
24 9 0.32
25 19 0.68
ACGTcount: A:0.47, C:0.12, G:0.05, T:0.36
Consensus pattern (24 bp):
AATCATATAACTCATCATAATGAT
Found at i:80611975 original size:11 final size:11
Alignment explanation
Indices: 80611959--80611983 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
80611949 GACTTGTTCT
80611959 AAAAAAAATAA
1 AAAAAAAATAA
80611970 AAAAAAAATAA
1 AAAAAAAATAA
80611981 AAA
1 AAA
80611984 CTTCAACACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAAAAAATAA
Found at i:80616150 original size:26 final size:26
Alignment explanation
Indices: 80616121--80616228 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
80616111 TGATACAAAT
80616121 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
80616147 TGATAATGGATTAGGTAAATATTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
80616173 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
80616199 TGATAATGGTTTAAGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80616225 TGAT
1 TGAT
80616229 GGGCATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.33, C:0.06, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:80617928 original size:32 final size:27
Alignment explanation
Indices: 80617848--80617924 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
80617838 AGGAAGCGTC
*
80617848 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGAT
*
80617875 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
80617902 CTGGTGGCTCTGCCACA-ATATCT
1 CTGGTGGCTCTGCCACATATATCT
80617925 ATATATGGTG
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
26 6 0.13
27 40 0.85
28 1 0.02
ACGTcount: A:0.18, C:0.26, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:80617933 original size:27 final size:26
Alignment explanation
Indices: 80617848--80617951 Score: 104
Period size: 27 Copynumber: 3.9 Consensus size: 26
80617838 AGGAAGCGTC
* *
80617848 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAA-TATCTTAT
80617875 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCT-TAT
80617902 CTGGTGGCTCTGCCACAATATCTATAT
1 CTGGTGGCTCTGCCACAATATCT-TAT
* * *
80617929 ATGGTGACT-TCGTCACAATATCT
1 CTGGTGGCTCT-GCCACAATATCT
80617952 GGCAGCCTCG
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
26 8 0.12
27 58 0.87
28 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATATCTTAT
Found at i:80621053 original size:22 final size:22
Alignment explanation
Indices: 80621035--80621081 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
80621025 AAGTTTCGGT
80621035 AACTCTGAAACCCTATTTCGAC
1 AACTCTGAAACCCTATTTCGAC
*
80621057 AACTCTGAAACCCTGTTTCGAC
1 AACTCTGAAACCCTATTTCGAC
80621079 AAC
1 AAC
80621082 GGATACGGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.32, C:0.32, G:0.11, T:0.26
Consensus pattern (22 bp):
AACTCTGAAACCCTATTTCGAC
Found at i:80630464 original size:27 final size:26
Alignment explanation
Indices: 80630420--80630471 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
80630410 CTCACTGCAA
*
80630420 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
80630447 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
80630472 GCAGTCTGGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:80630539 original size:26 final size:27
Alignment explanation
Indices: 80630510--80630569 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
80630500 CCACATATAT
*
80630510 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
80630536 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
80630563 ATATCTG
1 ATATCTG
80630570 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:80632087 original size:31 final size:31
Alignment explanation
Indices: 80632023--80632136 Score: 196
Period size: 31 Copynumber: 3.7 Consensus size: 31
80632013 TTAGTCTTGA
*
80632023 CATAT-ACTGGGCCGAAGCCTTTCCAT-AAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
80632052 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
80632083 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
80632114 CATATCACTGGGTCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
80632137 ACTGTAAACG
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
29 5 0.06
30 20 0.25
31 56 0.69
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:80632207 original size:42 final size:42
Alignment explanation
Indices: 80632160--80632251 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
80632150 TGGCCTTTAG
*
80632160 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
80632202 GCCCATTTTAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
80632244 GCCCATTT
1 GCCCATTT
80632252 GGGGAGACTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.33
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:80632426 original size:25 final size:25
Alignment explanation
Indices: 80632398--80632467 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
80632388 CTCTTTTAAT
80632398 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
80632423 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
80632448 AACTAGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
80632468 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 37 0.90
26 4 0.10
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:80633343 original size:26 final size:26
Alignment explanation
Indices: 80633277--80633378 Score: 80
Period size: 27 Copynumber: 3.7 Consensus size: 26
80633267 GGGCATATTC
80633277 GTCATTTTACCATACAAGGGTATTACG
1 GTCATTTTACC-TACAAGGGTATTACG
* *
80633304 GTCACTTTACCCTAC-AGGGATTTTACG
1 GTCATTTTA-CCTACAAGGG-TATTACG
* * * * *
80633331 GTCTTTTTACCTATTAGGGGTATTTCA
1 GTCATTTTACCTA-CAAGGGTATTACG
80633358 GTCATTTTAATCCTACAAGGG
1 GTCATTTT-A-CCTACAAGGG
80633379 GGTTTTGGTA
Statistics
Matches: 57, Mismatches: 12, Indels: 11
0.71 0.15 0.14
Matches are distributed among these distances:
26 8 0.14
27 35 0.61
28 10 0.18
29 4 0.07
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.37
Consensus pattern (26 bp):
GTCATTTTACCTACAAGGGTATTACG
Found at i:80633416 original size:27 final size:27
Alignment explanation
Indices: 80633386--80633437 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
80633376 GGGGGTTTTG
80633386 GTAATTCTAG-AAACCAAGGGTATTTCA
1 GTAATT-TAGTAAACCAAGGGTATTTCA
* *
80633413 GTAATTTTGTAAACCAATGGTATTT
1 GTAATTTAGTAAACCAAGGGTATTT
80633438 TTATAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 2 0.09
27 20 0.91
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.37
Consensus pattern (27 bp):
GTAATTTAGTAAACCAAGGGTATTTCA
Found at i:80633444 original size:27 final size:27
Alignment explanation
Indices: 80633396--80633503 Score: 87
Period size: 27 Copynumber: 3.9 Consensus size: 27
80633386 GTAATTCTAG
*
80633396 AAACCAAGGGTA-TTTCAGTAATTTTGT
1 AAACCAAGGGTATTTTTA-TAATTTTGT
*
80633423 AAACCAATGGTATTTTTATAATTTT-T
1 AAACCAAGGGTATTTTTATAATTTTGT
* *
80633449 AAAAAGTCAAGGGTATTTCTATAATTTTGT
1 --AAA-CCAAGGGTATTTTTATAATTTTGT
* **
80633479 AAATC-AGAGGTATTTTGGTAATTTT
1 AAACCAAG-GGTATTTTTATAATTTT
80633504 ACAAATTGAG
Statistics
Matches: 67, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
26 3 0.04
27 34 0.51
28 10 0.15
29 19 0.28
30 1 0.01
ACGTcount: A:0.34, C:0.07, G:0.16, T:0.43
Consensus pattern (27 bp):
AAACCAAGGGTATTTTTATAATTTTGT
Found at i:80633623 original size:54 final size:54
Alignment explanation
Indices: 80633487--80633642 Score: 174
Period size: 54 Copynumber: 2.9 Consensus size: 54
80633477 GTAAATCAGA
* * * *
80633487 GGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGGTAATTTCACAAACCAGT
1 GGTATTTCGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTCACAAACCAGG
* *
80633541 GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTCACAAACCAGG
* * * *
80633595 GGTATTTTGGTAATTCTATTC-TAC-AGGGGTATTTTAGTAATTTCACAA
1 GGTATTTCGGTAATT-T-TACAAACTAGGGGTATTTTGGTAATTTCACAA
80633643 TGAGGGTAAA
Statistics
Matches: 88, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
54 81 0.92
55 5 0.06
56 2 0.02
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (54 bp):
GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTCACAAACCAGG
Found at i:80633626 original size:81 final size:81
Alignment explanation
Indices: 80633487--80633642 Score: 185
Period size: 81 Copynumber: 1.9 Consensus size: 81
80633477 GTAAATCAGA
* * *
80633487 GGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTCGGT
1 GGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTCAGT
*
80633552 AATTTTACAAACTAGG
66 AATTTCACAAACTAGG
* *
80633568 GGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAA-TTCTATTC-TA-CAGGGGTATTT
1 GGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCGGTAATTTC-A--CAAACCAGGGGTATTT
*
80633629 TAGTAATTTCACAA
62 CAGTAATTTCACAA
80633643 TGAGGGTAAA
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
80 3 0.05
81 57 0.89
82 3 0.05
83 1 0.02
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTCAGT
AATTTCACAAACTAGG
Found at i:80633629 original size:27 final size:27
Alignment explanation
Indices: 80633487--80633609 Score: 176
Period size: 27 Copynumber: 4.6 Consensus size: 27
80633477 GTAAATCAGA
*
80633487 GGTATTTTGGTAATTTTACAAA-TTGAG
1 GGTATTTTGGTAATTTTACAAACTAG-G
* * * *
80633514 GGTATTTCGGTAATTTCACAAACCAGT
1 GGTATTTTGGTAATTTTACAAACTAGG
*
80633541 GGTATTTCGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACTAGG
80633568 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACTAGG
80633595 GGTATTTTGGTAATT
1 GGTATTTTGGTAATT
80633610 CTATTCTACA
Statistics
Matches: 86, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 85 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACTAGG
Found at i:80633756 original size:81 final size:81
Alignment explanation
Indices: 80633644--80633837 Score: 284
Period size: 81 Copynumber: 2.4 Consensus size: 81
80633634 ATTTCACAAT
* * * *
80633644 GAGGGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGT-AAG
1 GAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTTTGTAAATCGAGGGTGAA-
*
80633707 ACAGTAATTCTGTAAATC
64 ACAGTAATTCTATAAATC
80633725 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTGAAAC
1 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTGAAAC
*
80633790 GGTAATTCTATAAATC
66 AGTAATTCTATAAATC
**
80633806 GAGGGTAAAATGGTAATTCTACGAATCGAGGG
1 GAGGGTAAAATGGTAATTCTATAAATCGAGGG
80633838 CATTTTAGTA
Statistics
Matches: 103, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
81 100 0.97
82 3 0.03
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (81 bp):
GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTGAAAC
AGTAATTCTATAAATC
Found at i:80633826 original size:27 final size:27
Alignment explanation
Indices: 80633644--80633825 Score: 249
Period size: 27 Copynumber: 6.7 Consensus size: 27
80633634 ATTTCACAAT
*
80633644 GAGGGTAAAACGGTAATTTTGTAAA-C
1 GAGGGTAAAACGGTAATTCTGTAAATC
* *
80633670 TGAGGGTAAAATGGTAATTTTGTAAATC
1 -GAGGGTAAAACGGTAATTCTGTAAATC
* *
80633698 GAGGGTAAGACAGTAATTCTGTAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
* *
80633725 GAGGGTAAAATGGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
*
80633752 GAGGGTAAAACGGTAATTTTGTAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
* *
80633779 GAGGGTGAAACGGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
*
80633806 GAGGGTAAAATGGTAATTCT
1 GAGGGTAAAACGGTAATTCT
80633826 ACGAATCGAG
Statistics
Matches: 137, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
27 136 0.99
28 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.26, T:0.29
Consensus pattern (27 bp):
GAGGGTAAAACGGTAATTCTGTAAATC
Found at i:80635455 original size:12 final size:12
Alignment explanation
Indices: 80635438--80635463 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
80635428 CCACATACGC
80635438 CCGTGTGCTAGG
1 CCGTGTGCTAGG
80635450 CCGTGTGCTAGG
1 CCGTGTGCTAGG
80635462 CC
1 CC
80635464 ATGCCAAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.31, G:0.38, T:0.23
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:80641388 original size:16 final size:16
Alignment explanation
Indices: 80641367--80641399 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
80641357 AAAAATTAAT
80641367 ATATAAATTATA-ATTA
1 ATAT-AATTATATATTA
80641383 ATATAATTATATATTA
1 ATATAATTATATATTA
80641399 A
1 A
80641400 AGTTTATCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
ATATAATTATATATTA
Found at i:80649679 original size:41 final size:41
Alignment explanation
Indices: 80649627--80649770 Score: 173
Period size: 41 Copynumber: 3.5 Consensus size: 41
80649617 TCTCAAATCG
* *
80649627 CACACTAAGTGCCATATATAACCGAAGCCATCTCGATCTCA
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCGATCTCA
** * * *
80649668 CTTAGTAAGTGCCATATATAGCCGAAGCTATCTCAATCTCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCGATCTCA
* * * *
80649709 CACACTAAATGCCATATATAGCCAAAGCTATCTCGAAC-CG
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCGATCTCA
*
80649749 CACACTAAGTGCCACATATAGC
1 CACACTAAGTGCCATATATAGC
80649771 TGATTTGTTG
Statistics
Matches: 87, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
40 22 0.25
41 65 0.75
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.23
Consensus pattern (41 bp):
CACACTAAGTGCCATATATAGCCGAAGCTATCTCGATCTCA
Found at i:80654134 original size:13 final size:13
Alignment explanation
Indices: 80654116--80654142 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
80654106 AAAGTAGTCG
80654116 CACACGGGCGTGT
1 CACACGGGCGTGT
80654129 CACACGGGCGTGT
1 CACACGGGCGTGT
80654142 C
1 C
80654143 CCTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:80658460 original size:48 final size:48
Alignment explanation
Indices: 80658389--80658673 Score: 356
Period size: 48 Copynumber: 5.9 Consensus size: 48
80658379 ACTCAAAAGT
* * * *
80658389 CTCGCACCCTAGGTGCCAATATCATAGCCCGAAGCCAAATCAATG-AA
1 CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAATGTAA
* * *
80658436 GCTCGCACCCAAAGTGCCAATATCATGGCCTGAAGCCAAATCAATGTAA
1 -CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAATGTAA
* *
80658485 CTCGCACCCGAAGTGCTAATATCATGGTCCGAAGCCAAATAAATGTAA
1 CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAATGTAA
* * * *
80658533 CTCGCACCTGAAGTGCTAATATCATGGCCCAAAGCTAAATTAATGTAA
1 CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAATGTAA
** * * *
80658581 CTCGTGCCTGAAGTGCTAATATCATGGCCCGTAGCCAAATCAATATAA
1 CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAATGTAA
* * * *
80658629 CTCGCACCTGAAGTGCTAATATCATGGCCCGTAGACAAATTAATG
1 CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAATG
80658674 AAGCTCCAAA
Statistics
Matches: 210, Mismatches: 26, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
48 208 0.99
49 2 0.01
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (48 bp):
CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAATGTAA
Found at i:80664694 original size:45 final size:45
Alignment explanation
Indices: 80664643--80664728 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
80664633 ATGTAATTCG
* *
80664643 AACTCATTGAGTTGTGGTCTGAATTCATGATATATGTGACATCCA
1 AACTCATTAAGATGTGGTCTGAATTCATGATATATGTGACATCCA
* *
80664688 AACTCATTAAGATGTGGTCTGAGTTCGTGATATATGTGACA
1 AACTCATTAAGATGTGGTCTGAATTCATGATATATGTGACA
80664729 CATGTTTTGG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (45 bp):
AACTCATTAAGATGTGGTCTGAATTCATGATATATGTGACATCCA
Found at i:80671331 original size:22 final size:22
Alignment explanation
Indices: 80671302--80671357 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 22
80671292 ATCCTGTAAC
* *
80671302 TTTT-TGAAACTCTGTTTAGAA
1 TTTTCTGAAACTATGATTAGAA
*
80671323 TTTTCTGAAAGTATGATTAGAA
1 TTTTCTGAAACTATGATTAGAA
* *
80671345 TATACTGAAACTA
1 TTTTCTGAAACTA
80671358 CTTTAAGTAG
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 4 0.14
22 24 0.86
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (22 bp):
TTTTCTGAAACTATGATTAGAA
Found at i:80678616 original size:19 final size:19
Alignment explanation
Indices: 80678592--80678642 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 19
80678582 GACATAGGGA
* *
80678592 CACGCCCGTGTGCCTTTGG
1 CACGCCCGTGTACCTTTAG
*
80678611 CACGCCAGTGTACCTTTAG
1 CACGCCCGTGTACCTTTAG
*
80678630 CATGCCCGTGTAC
1 CACGCCCGTGTAC
80678643 TCAGGTCGTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.14, C:0.35, G:0.25, T:0.25
Consensus pattern (19 bp):
CACGCCCGTGTACCTTTAG
Found at i:80687789 original size:60 final size:60
Alignment explanation
Indices: 80687710--80687846 Score: 154
Period size: 60 Copynumber: 2.3 Consensus size: 60
80687700 AACTATGTTA
* * *
80687710 ATATGGGCAAGGCCTAATATA-TCTGGA-CTTGTAATAGGGCTATGGCCCAGATT-GATACTG
1 ATATGGGCTAGGCCCAATATACTCT-GATATTGTAA-AGGGCTATGGCCCAGATTAG-TACTG
* * * *
80687770 ATATGGGCTAGGCCCAATATACTCTGATATTGTAAGGGGTTATGGCCTAGATTAGTATTG
1 ATATGGGCTAGGCCCAATATACTCTGATATTGTAAAGGGCTATGGCCCAGATTAGTACTG
80687830 ATATGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
80687847 GTTAACACTG
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
60 49 0.74
61 17 0.26
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (60 bp):
ATATGGGCTAGGCCCAATATACTCTGATATTGTAAAGGGCTATGGCCCAGATTAGTACTG
Found at i:80689832 original size:12 final size:12
Alignment explanation
Indices: 80689815--80689839 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80689805 AAATATATAC
80689815 AAATGTACATAT
1 AAATGTACATAT
80689827 AAATGTACATAT
1 AAATGTACATAT
80689839 A
1 A
80689840 TGAATATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.08, T:0.32
Consensus pattern (12 bp):
AAATGTACATAT
Found at i:80692220 original size:33 final size:32
Alignment explanation
Indices: 80692147--80692274 Score: 94
Period size: 33 Copynumber: 3.9 Consensus size: 32
80692137 CAGTGTTTAT
* * **
80692147 ATGTAAGACCATAGCTGGGCTATGGCATTCTG
1 ATGTAAGACCATAACTGGGCTATGGCATACAA
*
80692179 ATGATAAGACCATAATTGGGCTATGGCACTACAA
1 ATG-TAAGACCATAACTGGGCTATGGCA-TACAA
** ** * * *
80692213 ATGTAAGACCATGGCAAGGCCATGGCAATGCAT
1 ATGTAAGACCATAACTGGGCTATGGC-ATACAA
** *
80692246 ATGTAAGACCATAGTTGGACTATGGCATA
1 ATGTAAGACCATAACTGGGCTATGGCATA
80692275 ATCAGAAACG
Statistics
Matches: 73, Mismatches: 20, Indels: 6
0.74 0.20 0.06
Matches are distributed among these distances:
32 5 0.07
33 62 0.85
34 6 0.08
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (32 bp):
ATGTAAGACCATAACTGGGCTATGGCATACAA
Found at i:80695337 original size:29 final size:29
Alignment explanation
Indices: 80695274--80695354 Score: 76
Period size: 29 Copynumber: 2.8 Consensus size: 29
80695264 AGTTTCTGTA
*
80695274 CTATTTGTATATTTAGAATTTAATTCCAT
1 CTATTTTTATATTTAGAATTTAATTCCAT
* * *
80695303 -TTTTTTTATTTTTAAGAATTTAA-TCCCT
1 CTATTTTTATATTT-AGAATTTAATTCCAT
* *
80695331 CTATTTTTCAAATTTAAAATTTAA
1 CTATTTTT-ATATTTAGAATTTAA
80695355 GTCTAATTGT
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
28 14 0.34
29 23 0.56
30 4 0.10
ACGTcount: A:0.32, C:0.10, G:0.04, T:0.54
Consensus pattern (29 bp):
CTATTTTTATATTTAGAATTTAATTCCAT
Found at i:80699455 original size:40 final size:40
Alignment explanation
Indices: 80699333--80699551 Score: 214
Period size: 40 Copynumber: 5.5 Consensus size: 40
80699323 ACCCAAGTTT
* * *
80699333 CTTCGGAAT-TTAG-CCGGATATAACCACAAGCACAAATGC
1 CTTCGG-ATCTTAGCCCGGATAAAATCACTAGCACAAATGC
* * * * *
80699372 CTTCGGGTCTTAGCCCGGAT-TAGTAACTCGCACAAATGC
1 CTTCGGATCTTAGCCCGGATAAAATCACTAGCACAAATGC
* *
80699411 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGC
1 CTTCGGATCTTAGCCCGGATAAAATCACTAGCACAAATGC
* * * * * *
80699451 CTTCGGGTCTTAACCCGGGT-ATAGCAACTCGCACAAATGC
1 CTTCGGATCTTAGCCCGGATAAAATC-ACTAGCACAAATGC
* *
80699491 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGC
1 CTTCGGATCTTAGCCCGGATAAAATCACTAGCACAAATGC
80699531 CTTCGGGA-CTTAGCCCGGATA
1 CTTC-GGATCTTAGCCCGGATA
80699552 TCATTCAAAT
Statistics
Matches: 146, Mismatches: 28, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
38 1 0.01
39 45 0.31
40 95 0.65
41 5 0.03
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CTTCGGATCTTAGCCCGGATAAAATCACTAGCACAAATGC
Found at i:80699510 original size:80 final size:78
Alignment explanation
Indices: 80699333--80699550 Score: 312
Period size: 80 Copynumber: 2.8 Consensus size: 78
80699323 ACCCAAGTTT
* * * * *
80699333 CTTCGGAAT-TTAGCCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATTAGTA
1 CTTCGG-ATCTTAGCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATTAGCA
80699397 ACTCGCACAAATGC
65 ACTCGCACAAATGC
* *
80699411 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGATCTTAG-CCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGAT-TAGC
80699476 AACTCGCACAAATGC
64 AACTCGCACAAATGC
* *
80699491 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGAT
1 CTTCGGATCTTAG-CCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGAT
80699551 ATCATTCAAA
Statistics
Matches: 125, Mismatches: 12, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
77 2 0.02
78 10 0.08
79 40 0.32
80 73 0.58
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (78 bp):
CTTCGGATCTTAGCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATTAGCAA
CTCGCACAAATGC
Found at i:80707506 original size:40 final size:40
Alignment explanation
Indices: 80707384--80707602 Score: 214
Period size: 40 Copynumber: 5.5 Consensus size: 40
80707374 ACCCAAGTTT
* * *
80707384 CTTCGGAAT-TTAG-CCGGATATAACCACAAGCACAAATGC
1 CTTCGG-ATCTTAGCCCGGATAAAATCACTAGCACAAATGC
* * * * *
80707423 CTTCGGGTCTTAGCCCGGAT-TAGTAACTCGCACAAATGC
1 CTTCGGATCTTAGCCCGGATAAAATCACTAGCACAAATGC
* *
80707462 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGC
1 CTTCGGATCTTAGCCCGGATAAAATCACTAGCACAAATGC
* * * * * *
80707502 CTTCGGGTCTTAACCCGGGT-ATAGCAACTCGCACAAATGC
1 CTTCGGATCTTAGCCCGGATAAAATC-ACTAGCACAAATGC
* *
80707542 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGC
1 CTTCGGATCTTAGCCCGGATAAAATCACTAGCACAAATGC
80707582 CTTCGGGA-CTTAGCCCGGATA
1 CTTC-GGATCTTAGCCCGGATA
80707603 TCATTCAAAT
Statistics
Matches: 146, Mismatches: 28, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
38 1 0.01
39 45 0.31
40 95 0.65
41 5 0.03
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CTTCGGATCTTAGCCCGGATAAAATCACTAGCACAAATGC
Found at i:80707561 original size:80 final size:78
Alignment explanation
Indices: 80707384--80707601 Score: 312
Period size: 80 Copynumber: 2.8 Consensus size: 78
80707374 ACCCAAGTTT
* * * * *
80707384 CTTCGGAAT-TTAGCCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATTAGTA
1 CTTCGG-ATCTTAGCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATTAGCA
80707448 ACTCGCACAAATGC
65 ACTCGCACAAATGC
* *
80707462 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGATCTTAG-CCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGAT-TAGC
80707527 AACTCGCACAAATGC
64 AACTCGCACAAATGC
* *
80707542 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGAT
1 CTTCGGATCTTAG-CCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGAT
80707602 ATCATTCAAA
Statistics
Matches: 125, Mismatches: 12, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
77 2 0.02
78 10 0.08
79 40 0.32
80 73 0.58
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (78 bp):
CTTCGGATCTTAGCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATTAGCAA
CTCGCACAAATGC
Found at i:80713712 original size:73 final size:73
Alignment explanation
Indices: 80713622--80713772 Score: 293
Period size: 73 Copynumber: 2.1 Consensus size: 73
80713612 ATGGCTGCTC
80713622 TTAATTAACGATTTGAGAAGGGTTTTTATTAGGTTCTATCTTTTTATATCCTACAGGTAGGAAAG
1 TTAATTAACGATTTGAGAAGGGTTTTTATTAGGTTCTATCTTTTTATATCCTACAGGTAGGAAAG
80713687 CTTCATAA
66 CTTCATAA
*
80713695 TTAATTAACGATTTGAGAAGGGTTTTTATTAGGTTCTTTCTTTTTATATCCTACAGGTAGGAAAG
1 TTAATTAACGATTTGAGAAGGGTTTTTATTAGGTTCTATCTTTTTATATCCTACAGGTAGGAAAG
80713760 CTTCATAA
66 CTTCATAA
80713768 TTAAT
1 TTAAT
80713773 ACGTGGTGTT
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 77 1.00
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.42
Consensus pattern (73 bp):
TTAATTAACGATTTGAGAAGGGTTTTTATTAGGTTCTATCTTTTTATATCCTACAGGTAGGAAAG
CTTCATAA
Found at i:80717828 original size:56 final size:56
Alignment explanation
Indices: 80717742--80717861 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
80717732 ACAAGGGATG
80717742 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
80717798 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
80717854 ATGGGCAA
1 ATGGGCAA
80717862 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:80719071 original size:40 final size:40
Alignment explanation
Indices: 80718987--80719211 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
80718977 TCGAATGATG
* * * *
80718987 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
80719027 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
80719067 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
80719106 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
80719146 TCCGGGTTAAGTCCCGAAGGCATTTGTGAGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
80719187 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
80719212 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
39 34 0.21
40 118 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:80720736 original size:8 final size:9
Alignment explanation
Indices: 80720710--80720738 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
80720700 TAAAAAATTA
80720710 AAATTTTAT
1 AAATTTTAT
80720719 AAATTTTAT
1 AAATTTTAT
80720728 AAA-TTTAT
1 AAATTTTAT
80720736 AAA
1 AAA
80720739 AAGATATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (9 bp):
AAATTTTAT
Found at i:80721717 original size:10 final size:10
Alignment explanation
Indices: 80721698--80721753 Score: 50
Period size: 10 Copynumber: 6.0 Consensus size: 10
80721688 TTTAATTTTT
*
80721698 TATATGTTTA
1 TATATATTTA
80721708 TATATATTTA
1 TATATATTTA
80721718 TATAT-TTT-
1 TATATATTTA
*
80721726 TAGT-TATCT-
1 TA-TATATTTA
80721735 TATATATTTA
1 TATATATTTA
80721745 TATAT-TTTA
1 TATATATTTA
80721754 AAATTCACAA
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
8 4 0.10
9 16 0.41
10 19 0.49
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (10 bp):
TATATATTTA
Found at i:80721719 original size:8 final size:8
Alignment explanation
Indices: 80721708--80721751 Score: 52
Period size: 8 Copynumber: 5.1 Consensus size: 8
80721698 TATATGTTTA
80721708 TATATATT
1 TATATATT
80721716 TATATATT
1 TATATATT
*
80721724 TTTAGTTATCT
1 TATA--TAT-T
80721735 TATATATT
1 TATATATT
80721743 TATATATT
1 TATATATT
80721751 T
1 T
80721752 TAAAATTCAC
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
8 21 0.68
9 3 0.10
10 3 0.10
11 4 0.13
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (8 bp):
TATATATT
Found at i:80721725 original size:27 final size:28
Alignment explanation
Indices: 80721695--80721753 Score: 79
Period size: 27 Copynumber: 2.2 Consensus size: 28
80721685 TATTTTAATT
80721695 TTTTATATGTT-T-ATATATATTTATATA
1 TTTTATA-GTTATCATATATATTTATATA
*
80721722 TTTT-TAGTTATCTTATATATTTATATA
1 TTTTATAGTTATCATATATATTTATATA
80721749 TTTTA
1 TTTTA
80721754 AAATTCACAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
25 3 0.11
26 3 0.11
27 22 0.79
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (28 bp):
TTTTATAGTTATCATATATATTTATATA
Found at i:80722334 original size:26 final size:26
Alignment explanation
Indices: 80722298--80722407 Score: 168
Period size: 26 Copynumber: 4.2 Consensus size: 26
80722288 TGATACAAAT
*
80722298 TGATAAAAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
80722324 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
80722350 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
80722376 TGATAAT-GGTTTAGGTAAATGTTTCA
1 TGATAATAGG-TTAGGTAAATGTTCCA
80722402 TGATAA
1 TGATAA
80722408 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
25 2 0.03
26 78 0.98
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:80726910 original size:96 final size:96
Alignment explanation
Indices: 80726785--80727155 Score: 460
Period size: 96 Copynumber: 3.8 Consensus size: 96
80726775 TTGCCAACGT
* *
80726785 CATGTCCCAAACATGGTCTTACACTGGCACACATATTATATTCGATGCCATGTCTCAGACATGGT
1 CATGTCCCAAACATGGTCTTACACTGGCACACATATCATATTCGATGCCATGTCCCAGACATGGT
*
80726850 CTTACACAGGCACATATATCATTGCCGATGC
66 CTTACACAGGCACATATATCATCGCCGATGC
*
80726881 CATGTCCCAAACATGGTCTTACACTGGCACACATATCAT-TTACGATGCCATGTCCCAGATATGG
1 CATGTCCCAAACATGGTCTTACACTGGCACACATATCATATT-CGATGCCATGTCCCAGACATGG
* * *
80726945 TCTTACATAGGCACATTTATCATCACCGATGC
65 TCTTACACAGGCACATATATCATCGCCGATGC
* ** *
80726977 CATGTCCCAAACATGGTCTTACA-TAGGCACATATATCATCGTCGCCAGTGCCATATCCCAGACA
1 CATGTCCCAAACATGGTCTTACACT-GGCACACATATCATATTCG--A-TGCCATGTCCCAGACA
* *
80727041 TGGTCTTACACAGGCATATATATCATCGTCGATGC
62 TGGTCTTACACAGGCACATATATCATCGCCGATGC
* * * ** * * * *
80727076 CATATCCCAGACATGGTCTTACACAGGCACATTTTTCATCA-CCAATGCTATGTCCCAGACATGG
1 CATGTCCCAAACATGGTCTTACACTGGCACACATATCAT-ATTCGATGCCATGTCCCAGACATGG
*
80727140 TCTTACACAAGCACAT
65 TCTTACACAGGCACAT
80727156 TTAGCATGGT
Statistics
Matches: 239, Mismatches: 28, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
95 3 0.01
96 155 0.65
97 2 0.01
98 1 0.00
99 78 0.33
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (96 bp):
CATGTCCCAAACATGGTCTTACACTGGCACACATATCATATTCGATGCCATGTCCCAGACATGGT
CTTACACAGGCACATATATCATCGCCGATGC
Found at i:80727095 original size:147 final size:144
Alignment explanation
Indices: 80726789--80727155 Score: 461
Period size: 147 Copynumber: 2.5 Consensus size: 144
80726779 CAACGTCATG
* * ** * * *
80726789 TCCCAAACATGGTCTTACACTGGCACACATATTAT-ATTCGATGCCATGTCTCAGACATGGTCTT
1 TCCCAGACATGGTCTTACACAGGCACATTTATCATCA-CCGATGCCATGTCCCAGACATGGTCTT
* *
80726853 ACACAGGCACATATATCATTGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCACACATATC
65 ACACAGGCACATATATCATTGCCGATGCCATATCCCAAACATGGTCTTACACAGGCACACATATC
* *
80726918 ATTTACGATGCCATG
130 ATGTACGATGCCATA
* * *
80726933 TCCCAGATATGGTCTTACATAGGCACATTTATCATCACCGATGCCATGTCCCAAACATGGTCTTA
1 TCCCAGACATGGTCTTACACAGGCACATTTATCATCACCGATGCCATGTCCCAGACATGGTCTTA
* * * *
80726998 CATAGGCACATATATCATCGTCGCC-AGTGCCATATCCCAGACATGGTCTTACACAGGCATATAT
66 CACAGGCACATATATCAT--T-GCCGA-TGCCATATCCCAAACATGGTCTTACACAGGCACACAT
80727062 ATCATCGT-CGATGCCATA
127 ATCAT-GTACGATGCCATA
* * *
80727080 TCCCAGACATGGTCTTACACAGGCACATTTTTCATCACCAATGCTATGTCCCAGACATGGTCTTA
1 TCCCAGACATGGTCTTACACAGGCACATTTATCATCACCGATGCCATGTCCCAGACATGGTCTTA
*
80727145 CACAAGCACAT
66 CACAGGCACAT
80727156 TTAGCATGGT
Statistics
Matches: 191, Mismatches: 26, Indels: 9
0.85 0.12 0.04
Matches are distributed among these distances:
144 70 0.37
145 1 0.01
146 2 0.01
147 117 0.61
148 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (144 bp):
TCCCAGACATGGTCTTACACAGGCACATTTATCATCACCGATGCCATGTCCCAGACATGGTCTTA
CACAGGCACATATATCATTGCCGATGCCATATCCCAAACATGGTCTTACACAGGCACACATATCA
TGTACGATGCCATA
Found at i:80727148 original size:48 final size:48
Alignment explanation
Indices: 80726785--80727158 Score: 401
Period size: 48 Copynumber: 7.7 Consensus size: 48
80726775 TTGCCAACGT
* * ** * *
80726785 CATGTCCCAAACATGGTCTTACACTGGCACACATATTAT-ATTCGATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATTTATCATCA-CCGATGC
* * **
80726833 CATGTCTCAGACATGGTCTTACACAGGCACATATATCATTGCCGATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATTTATCATCACCGATGC
* * ** *
80726881 CATGTCCCAAACATGGTCTTACACTGGCACACATATCATTTA-CGATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATTTATCA-TCACCGATGC
* *
80726929 CATGTCCCAGATATGGTCTTACATAGGCACATTTATCATCACCGATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATTTATCATCACCGATGC
* * * * *
80726977 CATGTCCCAAACATGGTCTTACATAGGCACATATATCATCGTCGCCAGTGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATTTATCATC-AC-CGA-TGC
* * * **
80727028 CATATCCCAGACATGGTCTTACACAGGCATATATATCATCGTCGATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATTTATCATCACCGATGC
* * *
80727076 CATATCCCAGACATGGTCTTACACAGGCACATTTTTCATCACCAATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATTTATCATCACCGATGC
* *
80727124 TATGTCCCAGACATGGTCTTACACAAGCACATTTA
1 CATGTCCCAGACATGGTCTTACACAGGCACATTTA
80727159 GCATGGTGTC
Statistics
Matches: 279, Mismatches: 41, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
47 2 0.01
48 231 0.83
49 5 0.02
50 2 0.01
51 39 0.14
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACAGGCACATTTATCATCACCGATGC
Found at i:80731295 original size:36 final size:36
Alignment explanation
Indices: 80731242--80731335 Score: 109
Period size: 36 Copynumber: 2.6 Consensus size: 36
80731232 TTCATTAACG
* * * * *
80731242 ATCAGTCAATCAG-AACAATTAATTATTTAGTAATA
1 ATCAGTTATTCAGTAACAATCAATTATTCAATAATA
* *
80731277 GTCAGTTATTCGGTAACAATCAATTATTCAATAATA
1 ATCAGTTATTCAGTAACAATCAATTATTCAATAATA
*
80731313 ATCAGTTATTCAGTAGCAATCAA
1 ATCAGTTATTCAGTAACAATCAA
80731336 CTGATTGGTT
Statistics
Matches: 48, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
35 9 0.19
36 39 0.81
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (36 bp):
ATCAGTTATTCAGTAACAATCAATTATTCAATAATA
Found at i:80731333 original size:18 final size:18
Alignment explanation
Indices: 80731220--80731334 Score: 79
Period size: 18 Copynumber: 6.3 Consensus size: 18
80731210 AGCAATTAAT
*
80731220 CAATCAGTAATATTCATTAA
1 CAATCAGT--TATTCAGTAA
* * *
80731240 CGATCAGTCAATCAG-AA
1 CAATCAGTTATTCAGTAA
* * *
80731257 CAATTAATTATTTAGTAA
1 CAATCAGTTATTCAGTAA
* * *
80731275 TAGTCAGTTATTCGGTAA
1 CAATCAGTTATTCAGTAA
* *
80731293 CAATCAATTATTCAATAA
1 CAATCAGTTATTCAGTAA
* *
80731311 TAATCAGTTATTCAGTAG
1 CAATCAGTTATTCAGTAA
80731329 CAATCA
1 CAATCA
80731335 ACTGATTGGT
Statistics
Matches: 68, Mismatches: 26, Indels: 4
0.69 0.27 0.04
Matches are distributed among these distances:
17 11 0.16
18 50 0.74
20 7 0.10
ACGTcount: A:0.41, C:0.15, G:0.10, T:0.34
Consensus pattern (18 bp):
CAATCAGTTATTCAGTAA
Found at i:80731608 original size:47 final size:47
Alignment explanation
Indices: 80731539--80731629 Score: 137
Period size: 47 Copynumber: 1.9 Consensus size: 47
80731529 CAGTAACAGT
*
80731539 AACAGTAGCAGTACAGTACACAGAGTACCTCATCGAAACAAATCCAA
1 AACAGTAACAGTACAGTACACAGAGTACCTCATCGAAACAAATCCAA
* * * *
80731586 AACAGTAACATTACGGTACACAGAGTGCCTCATCGGAACAAATC
1 AACAGTAACAGTACAGTACACAGAGTACCTCATCGAAACAAATC
80731630 TGAAATAATA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 39 1.00
ACGTcount: A:0.42, C:0.25, G:0.16, T:0.16
Consensus pattern (47 bp):
AACAGTAACAGTACAGTACACAGAGTACCTCATCGAAACAAATCCAA
Found at i:80737494 original size:18 final size:18
Alignment explanation
Indices: 80737457--80737507 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
80737447 AGTCAATCAG
* **
80737457 AACAATTAATTATTTAGT
1 AACAATCAATTATTCGGT
* *
80737475 AATAGTCAATTATTCGGT
1 AACAATCAATTATTCGGT
80737493 AACAATCAATTATTC
1 AACAATCAATTATTC
80737508 AATAATAATT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.41, C:0.12, G:0.08, T:0.39
Consensus pattern (18 bp):
AACAATCAATTATTCGGT
Found at i:80737514 original size:36 final size:36
Alignment explanation
Indices: 80737453--80737537 Score: 91
Period size: 36 Copynumber: 2.4 Consensus size: 36
80737443 GATCAGTCAA
* * * *
80737453 TCAG-AACAATTAATTATTTAGTAATAGTCAATTAT
1 TCAGTAACAATCAATTATTCAATAATAATCAATTAT
* * *
80737488 TCGGTAACAATCAATTATTCAATAATAATTAGTTAT
1 TCAGTAACAATCAATTATTCAATAATAATCAATTAT
*
80737524 TCAGTATCAATCAA
1 TCAGTAACAATCAA
80737538 CTGATCTGTT
Statistics
Matches: 40, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
35 3 0.08
36 37 0.93
ACGTcount: A:0.42, C:0.12, G:0.08, T:0.38
Consensus pattern (36 bp):
TCAGTAACAATCAATTATTCAATAATAATCAATTAT
Found at i:80737611 original size:19 final size:19
Alignment explanation
Indices: 80737546--80737613 Score: 68
Period size: 18 Copynumber: 3.7 Consensus size: 19
80737536 AACTGATCTG
* *
80737546 TTATCCAGTAACAGTC-AA
1 TTATTCAGTAACAATCAAA
* *
80737564 TTATTCAGTAAAAATCAGA
1 TTATTCAGTAACAATCAAA
* *
80737583 -TATACAGTAACAATTAAA
1 TTATTCAGTAACAATCAAA
80737601 TTATTCAGTAACA
1 TTATTCAGTAACA
80737614 GTCGATCTTT
Statistics
Matches: 39, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
18 27 0.69
19 12 0.31
ACGTcount: A:0.46, C:0.15, G:0.09, T:0.31
Consensus pattern (19 bp):
TTATTCAGTAACAATCAAA
Found at i:80737790 original size:53 final size:53
Alignment explanation
Indices: 80737729--80737849 Score: 172
Period size: 53 Copynumber: 2.3 Consensus size: 53
80737719 CCGAAGCCGG
* *
80737729 AACAGTAACAGTAGCAGTACGGTACACAGAGTACCTCATCGGAACAAAT-TCGA
1 AACAGTAACAGTAACAGTACGGTACACAGAGTACCTCATCAGAACAAATCT-GA
* *
80737782 AACAGTAACAGTAACATTACGGTACACAGAGTGCCTCATCAGAACAAATCTGA
1 AACAGTAACAGTAACAGTACGGTACACAGAGTACCTCATCAGAACAAATCTGA
* *
80737835 AATAATAACAGTAAC
1 AACAGTAACAGTAAC
80737850 GTAACAGTAA
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
53 60 0.98
54 1 0.02
ACGTcount: A:0.43, C:0.21, G:0.17, T:0.18
Consensus pattern (53 bp):
AACAGTAACAGTAACAGTACGGTACACAGAGTACCTCATCAGAACAAATCTGA
Found at i:80739271 original size:29 final size:29
Alignment explanation
Indices: 80739236--80739296 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
80739226 AATTTAATAA
80739236 TATACTTATATAATAAGTAAATATACATG
1 TATACTTATATAATAAGTAAATATACATG
80739265 TATACTTATATAATAAGTAAATATACATG
1 TATACTTATATAATAAGTAAATATACATG
80739294 TAT
1 TAT
80739297 TTTACAAATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.39
Consensus pattern (29 bp):
TATACTTATATAATAAGTAAATATACATG
Found at i:80740584 original size:15 final size:16
Alignment explanation
Indices: 80740558--80740590 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
80740548 AAAACAAACC
80740558 ATTTTGTTAAAAAAAT
1 ATTTTGTTAAAAAAAT
*
80740574 ATTTT-TTAAAAATAT
1 ATTTTGTTAAAAAAAT
80740589 AT
1 AT
80740591 AAAGAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (16 bp):
ATTTTGTTAAAAAAAT
Found at i:80740908 original size:38 final size:40
Alignment explanation
Indices: 80740865--80740943 Score: 135
Period size: 38 Copynumber: 2.0 Consensus size: 40
80740855 ACATATTTAA
80740865 TATTTAGTCTATATAAAGAAACAAA-TATAAA-AAAACCC
1 TATTTAGTCTATATAAAGAAACAAATTATAAAGAAAACCC
*
80740903 TATTTAGTCTATATAAAGAAACAAATTTTAAAGAAAACCC
1 TATTTAGTCTATATAAAGAAACAAATTATAAAGAAAACCC
80740943 T
1 T
80740944 TAAAAGCAAC
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
38 25 0.66
39 5 0.13
40 8 0.21
ACGTcount: A:0.52, C:0.13, G:0.06, T:0.29
Consensus pattern (40 bp):
TATTTAGTCTATATAAAGAAACAAATTATAAAGAAAACCC
Found at i:80741773 original size:14 final size:14
Alignment explanation
Indices: 80741754--80741782 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
80741744 AATTGCAAAC
80741754 AAAAATAAATAAAG
1 AAAAATAAATAAAG
80741768 AAAAATAAATAAAG
1 AAAAATAAATAAAG
80741782 A
1 A
80741783 GATAGTTGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.79, C:0.00, G:0.07, T:0.14
Consensus pattern (14 bp):
AAAAATAAATAAAG
Found at i:80745253 original size:23 final size:23
Alignment explanation
Indices: 80745227--80745278 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
80745217 GTAACAGCCC
*
80745227 GGTTTTAGCTAAATCGGAATAGT
1 GGTTTTAGCTAAATCAGAATAGT
*
80745250 GGTTTCAGCTAAATCAGAATAGT
1 GGTTTTAGCTAAATCAGAATAGT
80745273 GGTTTT
1 GGTTTT
80745279 GAAACCACAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.29, C:0.10, G:0.25, T:0.37
Consensus pattern (23 bp):
GGTTTTAGCTAAATCAGAATAGT
Found at i:80749665 original size:21 final size:21
Alignment explanation
Indices: 80749641--80749681 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
80749631 CATCGTGGCA
80749641 AGTTAACTTGCCACATCAGCT
1 AGTTAACTTGCCACATCAGCT
*
80749662 AGTTAACTTGCCACGTCAGC
1 AGTTAACTTGCCACATCAGC
80749682 AATTCTGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (21 bp):
AGTTAACTTGCCACATCAGCT
Found at i:80750549 original size:13 final size:14
Alignment explanation
Indices: 80750525--80750554 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
80750515 TATTACAAAT
80750525 ATACATAAAATAAA
1 ATACATAAAATAAA
80750539 ATACA-AAAATAAA
1 ATACATAAAATAAA
80750552 ATA
1 ATA
80750555 TAATTATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (14 bp):
ATACATAAAATAAA
Found at i:80755471 original size:38 final size:38
Alignment explanation
Indices: 80755427--80755503 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
80755417 TTCTAGTAGC
*
80755427 TAGAAGGACTAAATAGCTATGGAATTTAAAACTTGAGG
1 TAGAAGGACTAAATAGCTATGGAATTCAAAACTTGAGG
*
80755465 TAGAAGGATTAAATAGCTATGGAATTCAAAACTTGAGG
1 TAGAAGGACTAAATAGCTATGGAATTCAAAACTTGAGG
80755503 T
1 T
80755504 CCTTATATGG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (38 bp):
TAGAAGGACTAAATAGCTATGGAATTCAAAACTTGAGG
Found at i:80756646 original size:57 final size:57
Alignment explanation
Indices: 80756548--80756673 Score: 139
Period size: 57 Copynumber: 2.2 Consensus size: 57
80756538 TTACAGAAAA
* * * * * *
80756548 GATTTAGCCTGGACTGATAATCCTGATATAAGCCTCTTGAGCATATTTTATAGATAG
1 GATTTAGCTTGGACGGATAATCCTGATATAAGCCTCTTGAGCATATGTTAGAAACAG
* * *
80756605 GATTTAGCTTGGACGGGTAATCTTGAT-TAAG-CTCTTATGAGCATATGTTGGAAACAG
1 GATTTAGCTTGGACGGATAATCCTGATATAAGCCTC-T-TGAGCATATGTTAGAAACAG
80756662 GATTTAGCTTGG
1 GATTTAGCTTGG
80756674 GCAAGTAATC
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
55 3 0.05
56 5 0.09
57 50 0.86
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (57 bp):
GATTTAGCTTGGACGGATAATCCTGATATAAGCCTCTTGAGCATATGTTAGAAACAG
Found at i:80767648 original size:16 final size:16
Alignment explanation
Indices: 80767627--80767657 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80767617 CTATGTATGC
*
80767627 AAAATATAAAAGACAA
1 AAAATACAAAAGACAA
80767643 AAAATACAAAAGACA
1 AAAATACAAAAGACA
80767658 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.10, G:0.06, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAA
Found at i:80772743 original size:15 final size:14
Alignment explanation
Indices: 80772719--80772748 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
80772709 TTGACTTGTT
80772719 CTAAAATAATAATA
1 CTAAAATAATAATA
80772733 CTAACAATAATAATA
1 CTAA-AATAATAATA
80772748 C
1 C
80772749 AATACATACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.60, C:0.13, G:0.00, T:0.27
Consensus pattern (14 bp):
CTAAAATAATAATA
Found at i:80773366 original size:23 final size:23
Alignment explanation
Indices: 80773336--80773381 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
80773326 TAAGTGTGGG
*
80773336 GGTATTTGATAAATCATAATTTA
1 GGTATTTGATAAACCATAATTTA
*
80773359 GGTATTTGATAAACCGTAATTTA
1 GGTATTTGATAAACCATAATTTA
80773382 TACATATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.41
Consensus pattern (23 bp):
GGTATTTGATAAACCATAATTTA
Found at i:80788313 original size:18 final size:18
Alignment explanation
Indices: 80788292--80788340 Score: 50
Period size: 16 Copynumber: 2.9 Consensus size: 18
80788282 ATATCTTCCT
*
80788292 TATTAAATATATATATTA
1 TATTAAATATATATAATA
*
80788310 TATTATATAT-TATAATA
1 TATTAAATATATATAATA
*
80788327 -AGTAAATATA-ATAA
1 TATTAAATATATATAA
80788341 ATAAAAGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 11 0.42
17 6 0.23
18 9 0.35
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (18 bp):
TATTAAATATATATAATA
Found at i:80788378 original size:173 final size:173
Alignment explanation
Indices: 80788089--80788435 Score: 676
Period size: 173 Copynumber: 2.0 Consensus size: 173
80788079 TAAAATATAT
*
80788089 ATTATAATATTATAATATATATATCTTCCTTATTAAGTATATATATTATATTATATATTATAATA
1 ATTATAATATTATAATATATATATCTTCCTTATTAAATATATATATTATATTATATATTATAATA
80788154 AGTAAATATAATAAATAAAAGAAACAAAAAGAAAGACAGAAGGTTAAACGAAATAGAAAGAAAAA
66 AGTAAATATAATAAATAAAAGAAACAAAAAGAAAGACAGAAGGTTAAACGAAATAGAAAGAAAAA
*
80788219 GAAAGCAAAAGAAAAAGAGAAAGAAGGAAGGAGAAAGATGCAA
131 GAAAGCAAAAGAAAAAGAGAAAGAAGGAAGGAGAAAGATACAA
80788262 ATTATAATATTATAATATATATATCTTCCTTATTAAATATATATATTATATTATATATTATAATA
1 ATTATAATATTATAATATATATATCTTCCTTATTAAATATATATATTATATTATATATTATAATA
80788327 AGTAAATATAATAAATAAAAGAAACAAAAAGAAAGACAGAAGGTTAAACGAAATAGAAAGAAAAA
66 AGTAAATATAATAAATAAAAGAAACAAAAAGAAAGACAGAAGGTTAAACGAAATAGAAAGAAAAA
80788392 GAAAGCAAAAGAAAAAGAGAAAGAAGGAAGGAGAAAGATACAA
131 GAAAGCAAAAGAAAAAGAGAAAGAAGGAAGGAGAAAGATACAA
80788435 A
1 A
80788436 GCTAGGGATT
Statistics
Matches: 172, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
173 172 1.00
ACGTcount: A:0.58, C:0.05, G:0.13, T:0.24
Consensus pattern (173 bp):
ATTATAATATTATAATATATATATCTTCCTTATTAAATATATATATTATATTATATATTATAATA
AGTAAATATAATAAATAAAAGAAACAAAAAGAAAGACAGAAGGTTAAACGAAATAGAAAGAAAAA
GAAAGCAAAAGAAAAAGAGAAAGAAGGAAGGAGAAAGATACAA
Found at i:80789414 original size:39 final size:39
Alignment explanation
Indices: 80789294--80789432 Score: 140
Period size: 39 Copynumber: 3.6 Consensus size: 39
80789284 GACTTCGAGT
* *
80789294 CGATGAGACACTGGGTGTCAATTTATTACTTC-AGATATATT
1 CGATGAGACACTGGGTGTCAAATTA-TACTTCGA-AT-TATC
* * * ** *
80789335 CGATGAGGCACTGGATG-CCAATT-TACTTCGGTTTAGC
1 CGATGAGACACTGGGTGTCAAATTATACTTCGAATTATC
80789372 CGATGAGACACTGGGTGTCAAATTATACTTCGAATTATC
1 CGATGAGACACTGGGTGTCAAATTATACTTCGAATTATC
* *
80789411 CGATGAGGCACTGGGTGCCAAA
1 CGATGAGACACTGGGTGTCAAA
80789433 CTAGTGTGTT
Statistics
Matches: 79, Mismatches: 16, Indels: 8
0.77 0.16 0.08
Matches are distributed among these distances:
37 17 0.22
38 12 0.15
39 31 0.39
40 4 0.05
41 15 0.19
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATTATACTTCGAATTATC
Found at i:80795199 original size:19 final size:19
Alignment explanation
Indices: 80795175--80795212 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
80795165 CTAACTTTAT
80795175 TTATTTAGTCATTGTTCAA
1 TTATTTAGTCATTGTTCAA
80795194 TTATTTAGTCATTGTTCAA
1 TTATTTAGTCATTGTTCAA
80795213 ATAAATAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.11, T:0.53
Consensus pattern (19 bp):
TTATTTAGTCATTGTTCAA
Found at i:80796131 original size:13 final size:13
Alignment explanation
Indices: 80796095--80796143 Score: 64
Period size: 13 Copynumber: 3.8 Consensus size: 13
80796085 GAAAAATGCT
*
80796095 TTTGA-AAAGTAC
1 TTTGAGAAAGTGC
*
80796107 TATGAGAAAGTGC
1 TTTGAGAAAGTGC
80796120 TTTGAGAAAGTGC
1 TTTGAGAAAGTGC
*
80796133 TTTGAAAAAGT
1 TTTGAGAAAGT
80796144 TTAACAGTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
12 4 0.12
13 28 0.88
ACGTcount: A:0.39, C:0.06, G:0.24, T:0.31
Consensus pattern (13 bp):
TTTGAGAAAGTGC
Found at i:80796142 original size:26 final size:26
Alignment explanation
Indices: 80796083--80796143 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
80796073 ACGATTGAGG
80796083 TTGAAAAA-TGCTTTTGAAAAGTACT
1 TTGAAAAAGTGCTTTTGAAAAGTACT
* * *
80796108 ATGAGAAAGTGC-TTTGAGAAAGTGCT
1 TTGAAAAAGTGCTTTTGA-AAAGTACT
80796134 TTGAAAAAGT
1 TTGAAAAAGT
80796144 TTAACAGTGT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
25 11 0.38
26 18 0.62
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (26 bp):
TTGAAAAAGTGCTTTTGAAAAGTACT
Found at i:80808942 original size:20 final size:20
Alignment explanation
Indices: 80808881--80808943 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
80808871 TGGCGGGCTA
80808881 TGGATGATGTTACTCGGTGG
1 TGGATGATGTTACTCGGTGG
* ** *
80808901 TGGA-GGTGTTGGTGGGCT-G
1 TGGATGATGTTACTCGG-TGG
*
80808920 TGGATGATGTTACTTGGTGG
1 TGGATGATGTTACTCGGTGG
80808940 TGGA
1 TGGA
80808944 GGTGTCGGTA
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
19 14 0.44
20 18 0.56
ACGTcount: A:0.13, C:0.06, G:0.46, T:0.35
Consensus pattern (20 bp):
TGGATGATGTTACTCGGTGG
Found at i:80818265 original size:25 final size:25
Alignment explanation
Indices: 80818237--80818302 Score: 96
Period size: 25 Copynumber: 2.6 Consensus size: 25
80818227 AAGGGCCAAT
*
80818237 CATAATACGCCGCAAAGGTAACATA
1 CATAATACGCCACAAAGGTAACATA
* *
80818262 CATAATATGCCACAAAGGTAATATA
1 CATAATACGCCACAAAGGTAACATA
*
80818287 CATAATACACCACAAA
1 CATAATACGCCACAAA
80818303 AGCTAACAGA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.48, C:0.23, G:0.11, T:0.18
Consensus pattern (25 bp):
CATAATACGCCACAAAGGTAACATA
Found at i:80821406 original size:30 final size:31
Alignment explanation
Indices: 80821343--80821407 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
80821333 TATTAATCAT
* *
80821343 TGACTGTTTTGTTACTTTTTTATAACGTTAG
1 TGACTGTTTTGTTACTTTTTCATAAAGTTAG
80821374 TGACTGTTTTGTTA-TTTTTCA-AAAGTTGAG
1 TGACTGTTTTGTTACTTTTTCATAAAGTT-AG
80821404 TGAC
1 TGAC
80821408 AAAAATGAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
29 5 0.16
30 12 0.39
31 14 0.45
ACGTcount: A:0.22, C:0.09, G:0.18, T:0.51
Consensus pattern (31 bp):
TGACTGTTTTGTTACTTTTTCATAAAGTTAG
Found at i:80827161 original size:18 final size:20
Alignment explanation
Indices: 80827125--80827171 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
80827115 ATTTGTAAGT
80827125 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
80827145 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
80827164 ATGATATA
1 AT-ATATA
80827172 ACATGTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:80827641 original size:50 final size:50
Alignment explanation
Indices: 80827522--80827914 Score: 358
Period size: 50 Copynumber: 7.8 Consensus size: 50
80827512 GTTGTGAGAA
* * * *** *
80827522 CACGTGTGAAGTACTATGTGCAGACTACTATGTGTTTAAGATAGTTTTAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT--TGTTAGGT
80827574 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* * * * * * * * *
80827624 CGCATGTGTAATACTAAGTGCAAGCTACTATGCGTACCCGATAGTTTCGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG-TTAGGT
* * *
80827675 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* *
80827725 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAGGATTGATAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCA-GATTGTTAGGT
* * * * * * * *
80827775 CGCATGTGTAGTATTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTCGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATT--GTTAGGT
* * ** ** * * *
80827826 CACGTGTATAGTACTAAGTGTAGGCTACTACATGTATTAGATGGATAAGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* *
80827876 CACGTATGTAGTACTAAGTGCAGGCTACTATGCGTACCA
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCA
80827915 AAGAGCTTTG
Statistics
Matches: 271, Mismatches: 64, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
49 4 0.01
50 158 0.58
51 72 0.27
52 37 0.14
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
Found at i:80827708 original size:28 final size:28
Alignment explanation
Indices: 80827676--80827759 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
80827666 AGTTTCGATC
80827676 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
80827704 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
80827726 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
80827754 ACGTGT
1 ACGTGT
80827760 ACAGGATTGA
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:80827710 original size:101 final size:101
Alignment explanation
Indices: 80827573--80827754 Score: 301
Period size: 101 Copynumber: 1.8 Consensus size: 101
80827563 TAGTTTTAGG
* * *
80827573 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGTAATAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAATAC
80827638 TAAGTGCAAGCTACTATGCGTACCCGATAGTTTCGA
66 TAAGTGCAAGCTACTATGCGTACCCGATAGTTTCGA
* * *
80827674 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAATAC
*
80827739 TAAGTGCAGGCTACTA
66 TAAGTGCAAGCTACTA
80827755 CGTGTACAGG
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 74 1.00
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAATAC
TAAGTGCAAGCTACTATGCGTACCCGATAGTTTCGA
Found at i:80827802 original size:151 final size:151
Alignment explanation
Indices: 80827522--80827914 Score: 536
Period size: 151 Copynumber: 2.6 Consensus size: 151
80827512 GTTGTGAGAA
* * * * * *
80827522 CACGTGTGAAGTACTATGTGCAGACTACTATGTGTTTAAGATAGTTTTAGGTCACGTGTGTAGTA
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGAT-G-GTTAGGTCACGTGTGTAGTA
* *
80827587 CTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGTAATACTAAGTGCAAGCTAC
64 CTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAATACTAAGTGCAAGCTAC
**
80827652 TATGCGTACCCGATAGTTTCGAT
129 TATGCGTACCCGATAACTTCGAT
*
80827675 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGATGGTTAGGTCACGTGTGTAGTACT
* * *
80827740 AAGTGCAGGCTACTACGTGTA-CAGGATTGATAGGTCGCATGTGTAGTATTAAGTGCAGGCTACT
66 AAGTGCAGGCTACTACGTGTACCA-GATTGATAGGTCGCATGTGTAATACTAAGTGCAAGCTACT
*
80827804 ATGCGTACCCGTTAACTTCGAT
130 ATGCGTACCCGATAACTTCGAT
* * * * * * *
80827826 CACGTGTATAGTACTAAGTGTAGGCTACTACATGTATTAGATGGATAAGTCACGTATGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGATGGTTAGGTCACGTGTGTAGTACT
* *
80827891 AAGTGCAGGCTACTATGCGTACCA
66 AAGTGCAGGCTACTACGTGTACCA
80827915 AAGAGCTTTG
Statistics
Matches: 214, Mismatches: 24, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
150 2 0.01
151 173 0.81
152 3 0.01
153 36 0.17
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (151 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGATGGTTAGGTCACGTGTGTAGTACT
AAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAATACTAAGTGCAAGCTACTA
TGCGTACCCGATAACTTCGAT
Found at i:80827829 original size:101 final size:101
Alignment explanation
Indices: 80827724--80827913 Score: 274
Period size: 101 Copynumber: 1.9 Consensus size: 101
80827714 GATGGTTAGG
* * * * * *
80827724 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAGGATTGATAGGTCGCATGTGTAGTA
1 TCACGTGTATAGTACTAAGTGCAGGCTACTACATGTATCA-GATGGATAAGTCACATATGTAGTA
*
80827788 TTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGA
65 CTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGA
* * *
80827825 TCACGTGTATAGTACTAAGTGTAGGCTACTACATGTATTAGATGGATAAGTCACGTATGTAGTAC
1 TCACGTGTATAGTACTAAGTGCAGGCTACTACATGTATCAGATGGATAAGTCACATATGTAGTAC
80827890 TAAGTGCAGGCTACTATGCGTACC
66 TAAGTGCAGGCTACTATGCGTACC
80827914 AAAGAGCTTT
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
101 77 0.99
102 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (101 bp):
TCACGTGTATAGTACTAAGTGCAGGCTACTACATGTATCAGATGGATAAGTCACATATGTAGTAC
TAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGA
Found at i:80828137 original size:16 final size:16
Alignment explanation
Indices: 80828116--80828147 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
80828106 AGAATGGAGT
80828116 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
80828132 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
80828148 TAAAATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:80828773 original size:180 final size:180
Alignment explanation
Indices: 80828471--80828810 Score: 518
Period size: 180 Copynumber: 1.9 Consensus size: 180
80828461 CATCCGAGAG
* * *
80828471 CTGTACCACGAGATAAATAATTTTTAGTGAAGAGAAGTCGGAACTGTCAAATAGTGAAATAGGGG
1 CTGTACCACGAAATAAATAATTTTTAATGAAGAGAAGTCGGAACTATCAAATAGTGAAATAGGGG
* * * * * *
80828536 TATCTTTATTGAATAAACTCTACTAATTGGATAAACTAAAATTTTTTAAAATTTTATGGTAAGAA
66 TATCTTTAATGAATAAACTATACTAATTGGATAAACCAAAAATTCTGAAAATTTTATGGTAAGAA
* * * *
80828601 TATATGTGAGTCCAGTTTCTGGGAAAATTAGTGATTCTCAATTTGGAGTC
131 GATATATGAGTCCAGTTTCAGGAAAAATTAGTGATTCTCAATTTGGAGTC
* * * *
80828651 CTGTACCATGAAATAAATAATTTTTAATGAAGAGAGGTCGGAACTATTAGATAGTGAAATAGGGG
1 CTGTACCACGAAATAAATAATTTTTAATGAAGAGAAGTCGGAACTATCAAATAGTGAAATAGGGG
80828716 TATCTTTAATGAATAAACTATACTAATTGGATAAACCAAAAATTCTGAAAATTTTATGGTAAGAA
66 TATCTTTAATGAATAAACTATACTAATTGGATAAACCAAAAATTCTGAAAATTTTATGGTAAGAA
*
80828781 GATATATGAGTCTAGTTTCAGGAAAAATTA
131 GATATATGAGTCCAGTTTCAGGAAAAATTA
80828811 ACAAATCTTA
Statistics
Matches: 142, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
180 142 1.00
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (180 bp):
CTGTACCACGAAATAAATAATTTTTAATGAAGAGAAGTCGGAACTATCAAATAGTGAAATAGGGG
TATCTTTAATGAATAAACTATACTAATTGGATAAACCAAAAATTCTGAAAATTTTATGGTAAGAA
GATATATGAGTCCAGTTTCAGGAAAAATTAGTGATTCTCAATTTGGAGTC
Found at i:80830998 original size:28 final size:28
Alignment explanation
Indices: 80830966--80831140 Score: 128
Period size: 28 Copynumber: 6.2 Consensus size: 28
80830956 CTCTGCCATA
80830966 CAAGAGTTCGTATGGACTA-TCTTTCAAG
1 CAAGAGTTCGTATGGACTATTC-TTCAAG
*
80830994 CAAGAG-TCAGTAAGGACTATTCTTCAAG
1 CAAGAGTTC-GTATGGACTATTCTTCAAG
* * ** *
80831022 AAAGAGTACACATAGACTA-TCTTTCAAG
1 CAAGAGTTCGTATGGACTATTC-TTCAAG
* * *
80831050 AAAGAGTCCATATGGACTA-TCTTTCAAG
1 CAAGAGTTCGTATGGACTATTC-TTCAAG
* *
80831078 CAAGAGTTTGTAAT-GATTATTCTTCAAG
1 CAAGAGTTCGT-ATGGACTATTCTTCAAG
* * *
80831106 CAGGAG-TCTGCAGGGACTATTCTTCAAG
1 CAAGAGTTC-GTATGGACTATTCTTCAAG
80831134 CAAGAGT
1 CAAGAGT
80831141 CCGCAAGAAT
Statistics
Matches: 117, Mismatches: 21, Indels: 17
0.75 0.14 0.11
Matches are distributed among these distances:
27 6 0.05
28 104 0.89
29 7 0.06
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.29
Consensus pattern (28 bp):
CAAGAGTTCGTATGGACTATTCTTCAAG
Found at i:80831124 original size:84 final size:84
Alignment explanation
Indices: 80830967--80831142 Score: 212
Period size: 84 Copynumber: 2.1 Consensus size: 84
80830957 TCTGCCATAC
* *
80830967 AAGAGTTCGTATGGACTATCTTTCAAGCAAGAGTCAGTAAGGACTATTCTTCAAGAAAGAGTACA
1 AAGAGTCCATATGGACTATCTTTCAAGCAAGAGTCAGTAAGGACTATTCTTCAAGAAAGAGTACA
*
80831032 CATAGACTA-TCTTTCAAGA
66 CAGAGACTATTC-TTCAAGA
** * * * *
80831051 AAGAGTCCATATGGACTATCTTTCAAGCAAGAGTTTGTAATGATTATTCTTCAAGCAGGAGT-CT
1 AAGAGTCCATATGGACTATCTTTCAAGCAAGAGTCAGTAAGGACTATTCTTCAAGAAAGAGTAC-
* * *
80831115 GCAGGGACTATTCTTCAAGC
65 ACAGAGACTATTCTTCAAGA
80831135 AAGAGTCC
1 AAGAGTCC
80831143 GCAAGAATTA
Statistics
Matches: 78, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
83 1 0.01
84 75 0.96
85 2 0.03
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (84 bp):
AAGAGTCCATATGGACTATCTTTCAAGCAAGAGTCAGTAAGGACTATTCTTCAAGAAAGAGTACA
CAGAGACTATTCTTCAAGA
Found at i:80836614 original size:27 final size:27
Alignment explanation
Indices: 80836583--80836652 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
80836573 TCAGTAGTAG
*
80836583 AGGAGTCCACAGGACATTCCACAATAT
1 AGGAGTCCGCAGGACATTCCACAATAT
* * * * *
80836610 CGGAGTTCGTAGGACATTCCGCAGTAT
1 AGGAGTCCGCAGGACATTCCACAATAT
80836637 AGGAGTCCGCAGGACA
1 AGGAGTCCGCAGGACA
80836653 GTCTATTGTT
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.30, C:0.24, G:0.27, T:0.19
Consensus pattern (27 bp):
AGGAGTCCGCAGGACATTCCACAATAT
Found at i:80838178 original size:44 final size:44
Alignment explanation
Indices: 80838069--80838240 Score: 220
Period size: 45 Copynumber: 3.8 Consensus size: 44
80838059 TTGGGTGACA
*
80838069 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGACATTGAT
1 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGAC-GTGAT
80838114 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATC-AGCGTGAT
1 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGA-CGTGAT
* * **
80838158 TGTGGGCCAGTGTAAAACCATGTTGGACATGGCATCGGTTGTGAT
1 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATC-GACGTGAT
* *
80838203 ATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCAT
1 -TGTGAGCCAGTGTAAGACCATGT-T-GGACATGGCAT
80838241 TGGCCACAAC
Statistics
Matches: 113, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
44 39 0.35
45 42 0.37
46 20 0.18
47 1 0.01
48 11 0.10
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.27
Consensus pattern (44 bp):
TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGACGTGAT
Found at i:80842988 original size:9 final size:9
Alignment explanation
Indices: 80842974--80843004 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
80842964 TTAATAGATG
80842974 CTCAAAAGT
1 CTCAAAAGT
80842983 CTCAAAAGT
1 CTCAAAAGT
*
80842992 CTCAAAAAT
1 CTCAAAAGT
80843001 CTCA
1 CTCA
80843005 CAAAAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.45, C:0.26, G:0.06, T:0.23
Consensus pattern (9 bp):
CTCAAAAGT
Found at i:80843745 original size:7 final size:6
Alignment explanation
Indices: 80843713--80843742 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
80843703 TAAAATCTAC
*
80843713 TAAAAT TAAAAA TAAAAA TAAAAA TAAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
80843743 ATAGTTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
TAAAAA
Found at i:80845048 original size:21 final size:20
Alignment explanation
Indices: 80845003--80845042 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
80844993 AGCTTGTAAT
80845003 ATAAAGAATAATAATAATAG
1 ATAAAGAATAATAATAATAG
*
80845023 ATAAACGAATAATGATAATA
1 ATAAA-GAATAATAATAATA
80845043 AGTAAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.62, C:0.03, G:0.10, T:0.25
Consensus pattern (20 bp):
ATAAAGAATAATAATAATAG
Found at i:80846778 original size:496 final size:496
Alignment explanation
Indices: 80845838--80846829 Score: 1788
Period size: 496 Copynumber: 2.0 Consensus size: 496
80845828 CATGTCGCAC
*
80845838 GGCCGTGGCATTTTATCATAGCCCGTGTTTGGGGGAACCGTTGCCTTGTTTTCACAAGGCCATAA
1 GGCCGTGGCATTTTATCATAGCCCGTGTTTGGGGGAACCGTTGCCCTGTTTTCACAAGGCCATAA
*
80845903 GCACGCCCTTGTGCTTGGCCGTGTCTCTATGGAAAACCTATATTCAAGTGTTCTGTTAGTAAGTT
66 GCACGCCCTTGTGCTTGGCCGTGTCTCTATGGAAAACCTATATTCAAGTGTTCTATTAGTAAGTT
*
80845968 AGATGTCAAATACTAAATTTTAAAGAATTTAATACAGTTAGTGCTCGGGTTACCTCCCGAGAATC
131 AGATGTCAAATACTAAATTTTAAAGAATTTAATACAGTTAGTGCTCGGGTTACCTCCCGAGAACC
80846033 GCTTATTTATAGTCTATGCTCGACTTACCTCTTCCTTGAATGATCATGGTGGTTTGAGGAGTTTA
196 GCTTATTTATAGTCTATGCTCGACTTACCTCTTCCTTGAATGATCATGGTGGTTTGAGGAGTTTA
*
80846098 TACTCCTTATTCTTGCAATCAATCTCATCAAAATAAGGTTTTAAACGTGTGTTGTTTACCTTAAA
261 TACTCCTTATTCTTACAATCAATCTCATCAAAATAAGGTTTTAAACGTGTGTTGTTTACCTTAAA
80846163 AGTGCCGAACTTGGGATGACTCACCTCGACCGTACCGAATGGGAAAATGTTGAGTACCGTAAGAG
326 AGTGCCGAACTTGGGATGACTCACCTCGACCGTACCGAATGGGAAAATGTTGAGTACCGTAAGAG
* *
80846228 GGATTTCTTCATTTGGTGTGGTAGCGACAATGTGGGGATCTGCGGCATCGAATAAGACTCTATCT
391 GGATTTCTTCATTTGGTGCGGTAGCGACAATGTGGGGATCTGCGGCAGCGAATAAGACTCTATCT
80846293 CCAACCTTAAGTTGATTTGGAAAGGTATTGAGCTCGTTCTG
456 CCAACCTTAAGTTGATTTGGAAAGGTATTGAGCTCGTTCTG
* *
80846334 GGCCGTGGCATTTTATCATAGCCCGTGTTTGGGGGAACCGTTTCCCTGTTTTCACACGGCCATAA
1 GGCCGTGGCATTTTATCATAGCCCGTGTTTGGGGGAACCGTTGCCCTGTTTTCACAAGGCCATAA
*
80846399 GCACGCCCTTGTGCTTGGCCGTGTCTCTGTGGAAAACCTATATTCAAGTGTTCTATTAGTAAGTT
66 GCACGCCCTTGTGCTTGGCCGTGTCTCTATGGAAAACCTATATTCAAGTGTTCTATTAGTAAGTT
* *
80846464 AGATGTCGAATACTAAATTTTAAATAATTTAATACAGTTAGTGCTCGGGTTACCTCCCGAGAACC
131 AGATGTCAAATACTAAATTTTAAAGAATTTAATACAGTTAGTGCTCGGGTTACCTCCCGAGAACC
80846529 GCTTATTTATAGTCTATGCTCGACTTACCTC-TCCATTGAATGATCATGGTGGTTTGAGGAGTTT
196 GCTTATTTATAGTCTATGCTCGACTTACCTCTTCC-TTGAATGATCATGGTGGTTTGAGGAGTTT
* * *
80846593 ATACTCCTTATTCTTACTATTAATCTCATTAAAATAAGGTTTTAAACGTGTGTTGTTTACCTTAA
260 ATACTCCTTATTCTTACAATCAATCTCATCAAAATAAGGTTTTAAACGTGTGTTGTTTACCTTAA
** *
80846658 AAGTGTTGAACTTGGGATGACTCACCTCGACCGTACCGAATGGGAAAATGTTGAGTACTGTAAGA
325 AAGTGCCGAACTTGGGATGACTCACCTCGACCGTACCGAATGGGAAAATGTTGAGTACCGTAAGA
* *
80846723 GGGATTTCTTCATTTGGTGCGGTAGCGACAATGTGGGGATCTGCGGTAGCGAATAATACTCTATC
390 GGGATTTCTTCATTTGGTGCGGTAGCGACAATGTGGGGATCTGCGGCAGCGAATAAGACTCTATC
*
80846788 TCCAACCTTAAGTTGATTTGGAAAGGTATTGAGCTTGTTCTG
455 TCCAACCTTAAGTTGATTTGGAAAGGTATTGAGCTCGTTCTG
80846830 TCGTAGATTC
Statistics
Matches: 475, Mismatches: 20, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
495 3 0.01
496 472 0.99
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.34
Consensus pattern (496 bp):
GGCCGTGGCATTTTATCATAGCCCGTGTTTGGGGGAACCGTTGCCCTGTTTTCACAAGGCCATAA
GCACGCCCTTGTGCTTGGCCGTGTCTCTATGGAAAACCTATATTCAAGTGTTCTATTAGTAAGTT
AGATGTCAAATACTAAATTTTAAAGAATTTAATACAGTTAGTGCTCGGGTTACCTCCCGAGAACC
GCTTATTTATAGTCTATGCTCGACTTACCTCTTCCTTGAATGATCATGGTGGTTTGAGGAGTTTA
TACTCCTTATTCTTACAATCAATCTCATCAAAATAAGGTTTTAAACGTGTGTTGTTTACCTTAAA
AGTGCCGAACTTGGGATGACTCACCTCGACCGTACCGAATGGGAAAATGTTGAGTACCGTAAGAG
GGATTTCTTCATTTGGTGCGGTAGCGACAATGTGGGGATCTGCGGCAGCGAATAAGACTCTATCT
CCAACCTTAAGTTGATTTGGAAAGGTATTGAGCTCGTTCTG
Found at i:80852575 original size:44 final size:42
Alignment explanation
Indices: 80852434--80852590 Score: 147
Period size: 43 Copynumber: 3.7 Consensus size: 42
80852424 AGCTCGTACA
* * * * * *
80852434 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAAAGTCCCAGACGCGGTCTTACACGAAATCAAGTAT-G
**
80852477 ATGCCATTGTCCCAGACAG-GGTCTTACACGAAATCAAGTATG
1 ATGCCAAAGTCCCAGAC-GCGGTCTTACACGAAATCAAGTATG
* * *
80852519 ATGCCAACGTCCCATACGCGGTGTTACACGTAAATCATAAGT-TG
1 ATGCCAAAGTCCCAGACGCGGTCTTACACG-AAATC--AAGTATG
*
80852563 ATGCCAAAGTCCCAGACGTGGTCTTACA
1 ATGCCAAAGTCCCAGACGCGGTCTTACA
80852591 TGATAACATA
Statistics
Matches: 95, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
41 1 0.01
42 25 0.26
43 38 0.40
44 27 0.28
45 4 0.04
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (42 bp):
ATGCCAAAGTCCCAGACGCGGTCTTACACGAAATCAAGTATG
Found at i:80852586 original size:86 final size:85
Alignment explanation
Indices: 80852434--80852590 Score: 194
Period size: 86 Copynumber: 1.8 Consensus size: 85
80852424 AGCTCGTACA
* * * **
80852434 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAAATATCGATGCCATTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAGACGCGGTCTTACACGTAATCAAATATCGATGCCAAAGTCCCAGACAGGGT
80852499 CTTACACGAAATCAAGTATG
66 CTTACACGAAATCAAGTATG
* *
80852519 ATGCCAACGTCCCATACGCGGTGTTACACGTAAATCATAAGT-T-GATGCCAAAGTCCCAGAC-G
1 ATGCCAACGTCCCAGACGCGGTCTTACACGT-AATCA-AA-TATCGATGCCAAAGTCCCAGACAG
80852581 TGGTCTTACA
63 -GGTCTTACA
80852591 TGATAACATA
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
85 27 0.44
86 30 0.49
87 3 0.05
88 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (85 bp):
ATGCCAACGTCCCAGACGCGGTCTTACACGTAATCAAATATCGATGCCAAAGTCCCAGACAGGGT
CTTACACGAAATCAAGTATG
Done.