Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 249 of 290
Found at i:80857237 original size:15 final size:15
Alignment explanation
Indices: 80857205--80857233 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
80857195 ATTTTCTGTG
80857205 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
80857220 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
80857234 ATTTCCGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:80858398 original size:34 final size:34
Alignment explanation
Indices: 80858349--80858419 Score: 115
Period size: 34 Copynumber: 2.1 Consensus size: 34
80858339 TATGTCATGA
*
80858349 CATAGGATTCCGATATGTGATGTGCGAGTAAGAC
1 CATAAGATTCCGATATGTGATGTGCGAGTAAGAC
* *
80858383 CATAAGATTCTGATATGTGATGTGTGAGTAAGAC
1 CATAAGATTCCGATATGTGATGTGCGAGTAAGAC
80858417 CAT
1 CAT
80858420 GGCGTCGATA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.30
Consensus pattern (34 bp):
CATAAGATTCCGATATGTGATGTGCGAGTAAGAC
Found at i:80860416 original size:46 final size:45
Alignment explanation
Indices: 80860357--80860529 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 45
80860347 ATCTTGTAGT
*
80860357 CGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTT-CGTATCGAGGC
* * * * *
80860403 CGATGCATGTCCCAAACATGTCTTACACTAGCACTCGTTTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC-TTCGTATCGAGGC
* * * *
80860449 CGATGCCATGTCCCAGACATAGTCTTACATTGGCTCTCATAAT-GTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TCGT-ATCGAGGC
*
80860497 CGATGCATGTTCCAGACATGTCTTACACTAGCT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT
80860530 CACACAAGTG
Statistics
Matches: 105, Mismatches: 17, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
46 56 0.53
47 27 0.26
48 21 0.20
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTCGTATCGAGGC
Found at i:80860475 original size:94 final size:92
Alignment explanation
Indices: 80860357--80860528 Score: 231
Period size: 94 Copynumber: 1.8 Consensus size: 92
80860347 ATCTTGTAGT
* *
80860357 CGATGCATGTCCCAGACATGTCTTACACTAGCT-TACGT-CTCGAGGCCGATGCATGTCCCAAAC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATAAT-GAGGCCGATGCATGTCCCAAAC
80860420 ATGTCTTACACTAGCACTCGTTTCAATGC
64 ATGTCTTACACTAGCACTCGTTTCAATGC
* * * * *
80860449 CGATGCCATGTCCCAGACATAGTCTTACATTGGCTCTCATAATGTGGCCGATGCATGTTCCAGAC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATGAGGCCGATGCATGTCCCAAAC
80860514 ATGTCTTACACTAGC
64 ATGTCTTACACTAGC
80860529 TCACACAAGT
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
92 5 0.07
93 14 0.20
94 48 0.70
95 2 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (92 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATGAGGCCGATGCATGTCCCAAACAT
GTCTTACACTAGCACTCGTTTCAATGC
Found at i:80865576 original size:46 final size:46
Alignment explanation
Indices: 80865523--80865698 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
80865513 TGGTTGAGCA
80865523 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
80865569 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
80865614 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
80865662 CCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80865699 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.58
47 28 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80865679 original size:93 final size:93
Alignment explanation
Indices: 80865520--80865690 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
80865510 GGATGGTTGA
* * * *
80865520 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
80865585 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
80865613 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
*
80865678 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
80865691 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:80870953 original size:94 final size:92
Alignment explanation
Indices: 80870792--80871012 Score: 236
Period size: 94 Copynumber: 2.4 Consensus size: 92
80870782 ATCTGTGTCA
* *
80870792 ATGCTATGTCCCAGACATGGTCTTACACT-G-ACACATCTCATAGCCGGTGCATGTCCTAGACAT
1 ATGC-ATGTCCCAGACAT-GTCTTACACTAGCACACATCTCATAGCCGATGCATGTCCCAGACAT
* * * *
80870855 GTCTTACACTGGCT-TACGT-CTCGAGGCTG
64 GTCTTACACTAGCTCT-CATAAT-GAGGCCG
* * *
80870884 ATGCATGTCCTAGACATGTCTTACACTAGCACTCGTCTCA-ATGCCGATGCCATGTCCCAGACAT
1 ATGCATGTCCCAGACATGTCTTACACTAGCACACATCTCATA-GCCGATG-CATGTCCCAGACAT
*
80870948 AGTCTTACACTAGCTCTCATAATGTGGCCG
64 -GTCTTACACTAGCTCTCATAATGAGGCCG
* *
80870978 ATGCATGTCCCAGACATGTCTTATACTAGCTCACA
1 ATGCATGTCCCAGACATGTCTTACACTAGCACACA
80871013 CAAGTGACCC
Statistics
Matches: 107, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
90 10 0.09
91 14 0.13
92 18 0.17
93 13 0.12
94 50 0.47
95 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (92 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCACACATCTCATAGCCGATGCATGTCCCAGACATGT
CTTACACTAGCTCTCATAATGAGGCCG
Found at i:80870985 original size:47 final size:44
Alignment explanation
Indices: 80870792--80871009 Score: 192
Period size: 46 Copynumber: 4.7 Consensus size: 44
80870782 ATCTGTGTCA
* *
80870792 ATGCTATGTCCCAGACATGGTCTTACACT-GACACATCTC-ATAGCCG
1 ATGC-ATGTCCCAGACAT-GTCTTACACTAG-CTCGTCTCAAT-GCCG
* * * * * *
80870838 GTGCATGTCCTAGACATGTCTTACACTGGCTTACGTCTCGAGGCTG
1 ATGCATGTCCCAGACATGTCTTACACTAGC-T-CGTCTCAATGCCG
*
80870884 ATGCATGTCCTAGACATGTCTTACACTAGCACTCGTCTCAATGCCG
1 ATGCATGTCCCAGACATGTCTTACACTAG--CTCGTCTCAATGCCG
80870930 ATGCCATGTCCCAGACATAGTCTTACACTAGCTC-TCAT-AATGTGGCCG
1 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTCGTC-TCAA--T-GCCG
*
80870978 ATGCATGTCCCAGACATGTCTTATACTAGCTC
1 ATGCATGTCCCAGACATGTCTTACACTAGCTC
80871010 ACACAAGTGA
Statistics
Matches: 147, Mismatches: 13, Indels: 24
0.80 0.07 0.13
Matches are distributed among these distances:
44 11 0.07
45 17 0.12
46 69 0.47
47 30 0.20
48 20 0.14
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (44 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTCGTCTCAATGCCG
Found at i:80875629 original size:6 final size:6
Alignment explanation
Indices: 80875323--80875615 Score: 532
Period size: 6 Copynumber: 48.8 Consensus size: 6
80875313 TAGGAAAACA
* * * * *
80875323 AAATAA AAATAA AAATAA AAATAA AAATAG AAATAG AAATAG AAATAA
1 AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG
*
80875371 AAATAG AAATAG AAATAG AAATAG AAATAA AAATAG AAATAG AAATAG
1 AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG
80875419 AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG
1 AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG
80875467 AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG
1 AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG
80875515 AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG
1 AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG
80875563 AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG
1 AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG
80875611 AAATA
1 AAATA
80875616 AATATAAATA
Statistics
Matches: 282, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 282 1.00
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.17
Consensus pattern (6 bp):
AAATAG
Found at i:80877217 original size:3 final size:3
Alignment explanation
Indices: 80877201--80877240 Score: 62
Period size: 3 Copynumber: 13.3 Consensus size: 3
80877191 CTAAAAAGAC
* *
80877201 TAA TAA TGA CAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
80877241 TGGAAAGGGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:80877812 original size:20 final size:20
Alignment explanation
Indices: 80877787--80877836 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
80877777 TCTCCCACAC
80877787 CCGTGTGCCTAAACATACGA
1 CCGTGTGCCTAAACATACGA
80877807 CCGTGTGCCTAAACATACGA
1 CCGTGTGCCTAAACATACGA
*
80877827 CTGTGTGCCT
1 CCGTGTGCCT
80877837 TGCCTGTGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (20 bp):
CCGTGTGCCTAAACATACGA
Found at i:80882089 original size:13 final size:13
Alignment explanation
Indices: 80882073--80882105 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
80882063 TTTAATTAAA
*
80882073 TTAGTTAATTAGT
1 TTAGATAATTAGT
80882086 TTAGATAATTAGT
1 TTAGATAATTAGT
80882099 TTA-ATAA
1 TTAGATAA
80882106 AAAAAACCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:80883525 original size:50 final size:50
Alignment explanation
Indices: 80883379--80883515 Score: 211
Period size: 50 Copynumber: 2.7 Consensus size: 50
80883369 ATATGAGATT
* * *
80883379 CCATGTAAGACCATGTTTGAGACATGACATTGGCATCGATATGTGTGATC
1 CCATGTAAGACCATGTCTGAGATATGACATTGGCATCGATATGTGTGAAC
*
80883429 CCATGTAAGACCATGTCTGAGATATGGCATTGGCATCGATATGTGTGAAC
1 CCATGTAAGACCATGTCTGAGATATGACATTGGCATCGATATGTGTGAAC
* * *
80883479 CCATTTAAGACCATATCTGGGATATGACATTGGCATC
1 CCATGTAAGACCATGTCTGAGATATGACATTGGCATC
80883516 TTACTGTGTG
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 79 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29
Consensus pattern (50 bp):
CCATGTAAGACCATGTCTGAGATATGACATTGGCATCGATATGTGTGAAC
Found at i:80886332 original size:48 final size:46
Alignment explanation
Indices: 80886280--80886448 Score: 143
Period size: 48 Copynumber: 3.7 Consensus size: 46
80886270 CAGTGCAAGT
80886280 GATATGTGTGCTAGTGTAAGACATGTCTGGAACATGCATCGGCCTCGA
1 GATATGTGTGCTAGTGTAAGACATGTCTGGAACATGCATCGGCC-C-A
* * *
80886328 GATATGTGTGCTAGTGTAAGACAAGTCTAGG-ACATGTATCAG-CCA
1 GATATGTGTGCTAGTGTAAGACATGTCT-GGAACATGCATCGGCCCA
* * * **
80886373 CAT-CGTGAAAGCTAGTGTAAGAGCATGTCTGGAACATGGCATCGG-CTT
1 GATATGTG--TGCTAGTGTAAGA-CATGTCTGGAACAT-GCATCGGCCCA
* *
80886421 GATATGTGT-C-AGTTTAAGACCTGTCTGG
1 GATATGTGTGCTAGTGTAAGACATGTCTGG
80886449 GACACGACAT
Statistics
Matches: 98, Mismatches: 16, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
44 11 0.11
45 11 0.11
46 16 0.16
47 11 0.11
48 44 0.45
49 5 0.05
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (46 bp):
GATATGTGTGCTAGTGTAAGACATGTCTGGAACATGCATCGGCCCA
Found at i:80887553 original size:10 final size:11
Alignment explanation
Indices: 80887525--80887574 Score: 59
Period size: 11 Copynumber: 4.6 Consensus size: 11
80887515 AAGTAAGTTT
80887525 AAAAAAA-TCG
1 AAAAAAATTCG
80887535 AAAAAAATTC-
1 AAAAAAATTCG
*
80887545 AAAAAAATTTTG
1 AAAAAAA-TTCG
*
80887557 AAAAAAATTTG
1 AAAAAAATTCG
80887568 AAAAAAA
1 AAAAAAA
80887575 AATTTGAACA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
10 14 0.39
11 15 0.42
12 7 0.19
ACGTcount: A:0.70, C:0.04, G:0.06, T:0.20
Consensus pattern (11 bp):
AAAAAAATTCG
Found at i:80887561 original size:13 final size:12
Alignment explanation
Indices: 80887535--80887582 Score: 55
Period size: 11 Copynumber: 4.1 Consensus size: 12
80887525 AAAAAAATCG
*
80887535 AAAAAAA-TTCA
1 AAAAAAATTTGA
*
80887546 AAAAAATTTTG-
1 AAAAAAATTTGA
80887557 AAAAAAATTTGAA
1 AAAAAAATTTG-A
80887570 AAAAAAATTTGA
1 AAAAAAATTTGA
80887582 A
1 A
80887583 CATTGTTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
11 16 0.52
12 4 0.13
13 11 0.35
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.25
Consensus pattern (12 bp):
AAAAAAATTTGA
Found at i:80893760 original size:40 final size:40
Alignment explanation
Indices: 80893690--80893867 Score: 261
Period size: 40 Copynumber: 4.5 Consensus size: 40
80893680 AAACCAAGTA
* * ** *
80893690 CCTTCAGGATTTAG-CCGGATATAGCT-ACTCGTTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
80893729 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
80893769 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
80893809 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
80893849 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
80893868 TTGTCATCCG
Statistics
Matches: 128, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
39 13 0.10
40 115 0.90
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:80895136 original size:24 final size:24
Alignment explanation
Indices: 80895109--80895154 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
80895099 ACCCCCCCAA
80895109 TTTTCATTATT-TTATTACTAACCC
1 TTTTCATT-TTATTATTACTAACCC
* *
80895133 TTTTTATTTTATTATTTCTAAC
1 TTTTCATTTTATTATTACTAAC
80895155 ATAAAGCATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 2 0.11
24 17 0.89
ACGTcount: A:0.24, C:0.15, G:0.00, T:0.61
Consensus pattern (24 bp):
TTTTCATTTTATTATTACTAACCC
Found at i:80899775 original size:50 final size:50
Alignment explanation
Indices: 80899718--80899854 Score: 193
Period size: 50 Copynumber: 2.7 Consensus size: 50
80899708 ATATGAGATT
* * **
80899718 CCATGTAAGACCATGTTTGAGACATGACATTGGCATCGATATGTGTGGTC
1 CCATGTAAGACCATGTCTGGGACATGACATTGGCATCGATATGTGTGAAC
* *
80899768 CCATGTAAGACCATGTCTGGGACATGGCATTGCCATCGATATGTGTGAAC
1 CCATGTAAGACCATGTCTGGGACATGACATTGGCATCGATATGTGTGAAC
* * *
80899818 CCATTTAAGACCATATCTGGGATATGACATTGGCATC
1 CCATGTAAGACCATGTCTGGGACATGACATTGGCATC
80899855 TTACTATGTG
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 76 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.28
Consensus pattern (50 bp):
CCATGTAAGACCATGTCTGGGACATGACATTGGCATCGATATGTGTGAAC
Found at i:80904760 original size:29 final size:29
Alignment explanation
Indices: 80904718--80904773 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
80904708 TCAAAGTACA
80904718 TAAAGCAAATAAGGACTTTCGACTCAACG
1 TAAAGCAAATAAGGACTTTCGACTCAACG
80904747 TAAAGCAAATAAGGACTTTCGACTCAA
1 TAAAGCAAATAAGGACTTTCGACTCAA
80904774 AGCATCAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.21
Consensus pattern (29 bp):
TAAAGCAAATAAGGACTTTCGACTCAACG
Found at i:80909372 original size:39 final size:40
Alignment explanation
Indices: 80909272--80909495 Score: 273
Period size: 40 Copynumber: 5.7 Consensus size: 40
80909262 TTGAATGATG
*
80909272 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
80909311 GTCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
80909352 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
80909391 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
80909430 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
80909469 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
80909496 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 12, Indels: 14
0.86 0.06 0.07
Matches are distributed among these distances:
39 75 0.45
40 76 0.46
41 13 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:80909467 original size:79 final size:81
Alignment explanation
Indices: 80909272--80909495 Score: 280
Period size: 79 Copynumber: 2.8 Consensus size: 81
80909262 TTGAATGATG
* * * * * *
80909272 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-AATGTCTGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATATCCGGGCTAAGACCCGAAGGCAT
*
80909335 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
*
80909352 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATATCCGGGCTAAGACCCGAAGGCATT
*
80909414 TGTGCGAGTTACTAAA
66 TGTGCGAGATACTAAA
* * * *
80909430 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATATCCGGGCTAAGACCCGAAGGCATT
80909494 TG
66 TG
80909496 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
78 37 0.29
79 55 0.43
80 35 0.28
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:80909517 original size:79 final size:78
Alignment explanation
Indices: 80909325--80909518 Score: 216
Period size: 79 Copynumber: 2.5 Consensus size: 78
80909315 GGACTAAGAT
** * *
80909325 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGCCCGAAGGCATTTGTGCGAGATACTA
*
80909389 ATTCCGGGCTAAGC
65 ATACCGGGCTAAGC
** * *
80909403 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAG-CCCGAAGGCATTTGTGCGAGATACTA
*
80909467 ATAACCGGGCTATGTC
65 AT-ACCGGGCTAAG-C
*
80909483 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAA
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAA
80909519 ATTCTGAAGG
Statistics
Matches: 102, Mismatches: 9, Indels: 9
0.85 0.08 0.08
Matches are distributed among these distances:
77 1 0.01
78 36 0.35
79 40 0.39
80 25 0.25
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGCCCGAAGGCATTTGTGCGAGATACTAA
TACCGGGCTAAGC
Found at i:80911121 original size:3 final size:3
Alignment explanation
Indices: 80911108--80911215 Score: 68
Period size: 3 Copynumber: 38.0 Consensus size: 3
80911098 TTCCATTTTC
* * * * *
80911108 TCT TAT TCT TCT TCT CCT TC- TCT TCC TCT TGT TCT TAT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
* * * *
80911155 TC- TCC TCC TCT TCT TTT TCT T-T TCT GT-T TCT TC- TCT TGT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT -TCT TCT TCT TCT TCT TCT
*
80911197 T-T TTT TC- TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT
80911216 ACTGCCCAGG
Statistics
Matches: 81, Mismatches: 16, Indels: 16
0.72 0.14 0.14
Matches are distributed among these distances:
2 13 0.16
3 67 0.83
4 1 0.01
ACGTcount: A:0.02, C:0.31, G:0.03, T:0.65
Consensus pattern (3 bp):
TCT
Found at i:80911142 original size:26 final size:26
Alignment explanation
Indices: 80911107--80911197 Score: 78
Period size: 29 Copynumber: 3.4 Consensus size: 26
80911097 CTTCCATTTT
* *
80911107 CTCTTATTCTTCTTCTCCTTCTCTTC
1 CTCTTGTTCTTCTTCTTCTTCTCTTC
*
80911133 CTCTTGTTCTTATTCTTCTTCTTCTCCTC
1 CTCTTGTTC---TTCTTCTTCTTCTCTTC
* * *
80911162 CTCTTCTTTTTCTT-TTCTGTTTCTT-
1 CTCTTGTTCTTCTTCTTCT-TCTCTTC
80911187 CTCTTGTTCTT
1 CTCTTGTTCTT
80911198 TTTTTCTCTT
Statistics
Matches: 52, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
25 13 0.25
26 17 0.33
29 22 0.42
ACGTcount: A:0.02, C:0.32, G:0.03, T:0.63
Consensus pattern (26 bp):
CTCTTGTTCTTCTTCTTCTTCTCTTC
Found at i:80911204 original size:16 final size:15
Alignment explanation
Indices: 80911163--80911213 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
80911153 CTTCTCCTCC
*
80911163 TCTTCTTTT-TCTTT
1 TCTTTTTTTCTCTTT
*
80911177 TCTGTTTCTTCTCTTGT
1 TCT-TTTTTTCTCTT-T
80911194 TCTTTTTTTCTCTTCT
1 TCTTTTTTTCTCTT-T
80911210 TCTT
1 TCTT
80911214 CTACTGCCCA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
14 3 0.10
15 4 0.13
16 19 0.63
17 4 0.13
ACGTcount: A:0.00, C:0.24, G:0.04, T:0.73
Consensus pattern (15 bp):
TCTTTTTTTCTCTTT
Found at i:80911215 original size:11 final size:11
Alignment explanation
Indices: 80911113--80911215 Score: 54
Period size: 11 Copynumber: 9.4 Consensus size: 11
80911103 TTTTCTCTTA
80911113 TTCTTCTTCTCC
1 TTCTTCTTCT-C
80911125 TTC-TCTTCCTC
1 TTCTTCTT-CTC
* *
80911136 TTGTTCTTATTC
1 TTCTTCTT-CTC
80911148 TTCTTCTTCTC
1 TTCTTCTTCTC
* *
80911159 CTCCTCTTCT-
1 TTCTTCTTCTC
*
80911169 TT-TTCTTTTC
1 TTCTTCTTCTC
80911179 TGT-TTCTTCTC
1 T-TCTTCTTCTC
* * *
80911190 TTGTTCTTTTT
1 TTCTTCTTCTC
80911201 TTC-TCTTCTTC
1 TTCTTCTTC-TC
80911212 TTCT
1 TTCT
80911216 ACTGCCCAGG
Statistics
Matches: 68, Mismatches: 16, Indels: 14
0.69 0.16 0.14
Matches are distributed among these distances:
9 5 0.07
10 7 0.10
11 38 0.56
12 18 0.26
ACGTcount: A:0.01, C:0.31, G:0.03, T:0.65
Consensus pattern (11 bp):
TTCTTCTTCTC
Found at i:80911625 original size:22 final size:22
Alignment explanation
Indices: 80911597--80911638 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
80911587 CACTGGTCAC
80911597 GGCTTGGGAAAGGGAAAAATGA
1 GGCTTGGGAAAGGGAAAAATGA
*
80911619 GGCTTGGGAAAGGGAGAAAT
1 GGCTTGGGAAAGGGAAAAAT
80911639 AACCAAGTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.38, C:0.05, G:0.43, T:0.14
Consensus pattern (22 bp):
GGCTTGGGAAAGGGAAAAATGA
Found at i:80912596 original size:23 final size:24
Alignment explanation
Indices: 80912569--80912616 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
80912559 ATTGGGATAA
80912569 AAATGGTTTTG-AAAAAATAAATG
1 AAATGGTTTTGAAAAAAATAAATG
80912592 AAATGGTTTTGAAAAAAATAAATG
1 AAATGGTTTTGAAAAAAATAAATG
80912616 A
1 A
80912617 TCGACTTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 11 0.46
24 13 0.54
ACGTcount: A:0.54, C:0.00, G:0.17, T:0.29
Consensus pattern (24 bp):
AAATGGTTTTGAAAAAAATAAATG
Found at i:80913733 original size:45 final size:45
Alignment explanation
Indices: 80913676--80913781 Score: 185
Period size: 45 Copynumber: 2.4 Consensus size: 45
80913666 AACTTAATTT
*
80913676 TATTTGACTTAATTTTCAAGTTTGTATTAATTTAATTATAGCAAA
1 TATTTGACTTAATTTTCAAGTTTGTATTAATTTAATTATAGAAAA
*
80913721 TATTTGGCTTAATTTTCAAGTTTGTATTAATTTAATTATAGAAAA
1 TATTTGACTTAATTTTCAAGTTTGTATTAATTTAATTATAGAAAA
*
80913766 TGTTTGACTTAATTTT
1 TATTTGACTTAATTTT
80913782 ATTTGAAAGC
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 57 1.00
ACGTcount: A:0.33, C:0.06, G:0.10, T:0.51
Consensus pattern (45 bp):
TATTTGACTTAATTTTCAAGTTTGTATTAATTTAATTATAGAAAA
Found at i:80915511 original size:17 final size:17
Alignment explanation
Indices: 80915470--80915514 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
80915460 AATATAATAT
*
80915470 AATAAAGAAATTAAAAG
1 AATAAAGAAATAAAAAG
80915487 AATTAAAGAAATAAAATAG
1 AA-TAAAGAAATAAAA-AG
80915506 AA-AAAGAAA
1 AATAAAGAAA
80915515 GAACAAGGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 9 0.36
18 12 0.48
19 4 0.16
ACGTcount: A:0.73, C:0.00, G:0.11, T:0.16
Consensus pattern (17 bp):
AATAAAGAAATAAAAAG
Found at i:80916421 original size:6 final size:6
Alignment explanation
Indices: 80916410--80916435 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
80916400 TCCGTACCTG
80916410 ACTGTT ACTGTT ACTGTT ACTGTT AC
1 ACTGTT ACTGTT ACTGTT ACTGTT AC
80916436 CCTTATGGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.46
Consensus pattern (6 bp):
ACTGTT
Found at i:80917491 original size:24 final size:22
Alignment explanation
Indices: 80917452--80917507 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
80917442 CGGGTTGATG
* * *
80917452 ACACGGGTGTGTCATATCAACC
1 ACACGGGCGTGTCACATAAACC
* *
80917474 ACATGGGCGTGTCACATAAGCC
1 ACACGGGCGTGTCACATAAACC
80917496 ACACGGGCGTGT
1 ACACGGGCGTGT
80917508 GATACTATTC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.25, C:0.27, G:0.29, T:0.20
Consensus pattern (22 bp):
ACACGGGCGTGTCACATAAACC
Found at i:80922597 original size:7 final size:7
Alignment explanation
Indices: 80922581--80922612 Score: 50
Period size: 6 Copynumber: 4.9 Consensus size: 7
80922571 GAAATAGGAA
80922581 AGAAAA-
1 AGAAAAG
80922587 AGAAAAG
1 AGAAAAG
80922594 AGAAAAG
1 AGAAAAG
80922601 A-AAAAG
1 AGAAAAG
80922607 AGAAAA
1 AGAAAA
80922613 TTAGGGTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 12 0.50
7 12 0.50
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (7 bp):
AGAAAAG
Found at i:80922597 original size:13 final size:14
Alignment explanation
Indices: 80922581--80922612 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
80922571 GAAATAGGAA
80922581 AGAAAAAG-AAAAG
1 AGAAAAAGAAAAAG
80922594 AG-AAAAGAAAAAG
1 AGAAAAAGAAAAAG
80922607 AGAAAA
1 AGAAAA
80922613 TTAGGGTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 5 0.29
13 9 0.53
14 3 0.18
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (14 bp):
AGAAAAAGAAAAAG
Found at i:80923931 original size:29 final size:29
Alignment explanation
Indices: 80923887--80923946 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
80923877 GGTTAGGTAC
80923887 AAAGTAACTAGCGTCTCAGCATCCGAGCT
1 AAAGTAACTAGCGTCTCAGCATCCGAGCT
*
80923916 AAAGTAACTAGTGTCTCAGCATCCGAGCT
1 AAAGTAACTAGCGTCTCAGCATCCGAGCT
80923945 AA
1 AA
80923947 CTCCCGAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (29 bp):
AAAGTAACTAGCGTCTCAGCATCCGAGCT
Found at i:80924962 original size:18 final size:18
Alignment explanation
Indices: 80924920--80924960 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
80924910 AATAGATGCA
*
80924920 ATAATATGAGCAAAAATT
1 ATAAAATGAGCAAAAATT
*
80924938 ATAAAATGAGCAAAGA-T
1 ATAAAATGAGCAAAAATT
80924955 ATAAAA
1 ATAAAA
80924961 ATAAGATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.61, C:0.05, G:0.12, T:0.22
Consensus pattern (18 bp):
ATAAAATGAGCAAAAATT
Found at i:80925246 original size:17 final size:17
Alignment explanation
Indices: 80925226--80925260 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
80925216 AAATAGAGAT
80925226 ATAAT-ACATAAAATATA
1 ATAATAACA-AAAATATA
80925243 ATAATAACAAAAATATA
1 ATAATAACAAAAATATA
80925260 A
1 A
80925261 ATAGATAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.82
18 3 0.18
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.26
Consensus pattern (17 bp):
ATAATAACAAAAATATA
Found at i:80926535 original size:22 final size:22
Alignment explanation
Indices: 80926505--80926547 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
80926495 TGGGCTGCCT
*
80926505 GTTTTGGGTTTAATTTAGTTGG
1 GTTTGGGGTTTAATTTAGTTGG
* *
80926527 GTTTGGGGTTTAGTTTGGTTG
1 GTTTGGGGTTTAATTTAGTTG
80926548 CTTGGTTTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.09, C:0.00, G:0.37, T:0.53
Consensus pattern (22 bp):
GTTTGGGGTTTAATTTAGTTGG
Found at i:80926941 original size:44 final size:42
Alignment explanation
Indices: 80926880--80927031 Score: 128
Period size: 44 Copynumber: 3.5 Consensus size: 42
80926870 ATTCCTTCCA
** * *
80926880 CTGCAACTTCATAGAGATAGGATTAGTAGTTTCAATCTG-TTCT
1 CTGCAACTTCAGGGAGATAAGATT-GTA-TTTCAATCTGCTCCT
*
80926923 GCTGCAACTTTAGGGAGATAAGATTGGTATCTTCAATCTGCTCCT
1 -CTGCAACTTCAGGGAGATAAGATT-GTAT-TTCAATCTGCTCCT
* * *
80926968 CTGTAACTTCAGGGAGGTAAGACTTGTAATTTCAATCTACT-CT
1 CTGCAACTTCAGGGAGATAAGA-TTGT-ATTTCAATCTGCTCCT
* *
80927011 ACCGCAACTTCAGAGAGATAA
1 -CTGCAACTTCAGGGAGATAA
80927032 TGTTAGTGGC
Statistics
Matches: 89, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
43 3 0.03
44 79 0.89
45 7 0.08
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (42 bp):
CTGCAACTTCAGGGAGATAAGATTGTATTTCAATCTGCTCCT
Found at i:80927293 original size:30 final size:30
Alignment explanation
Indices: 80927257--80927364 Score: 94
Period size: 30 Copynumber: 3.6 Consensus size: 30
80927247 AGCTTACTCC
* *
80927257 TAGCTCATTTTCAACTCACGAGCTAAACCT
1 TAGCTCATTTTCAGCTCAAGAGCTAAACCT
** * * * *
80927287 TAGCTCAACTTCAGCTTAGGAGTTTAACCT
1 TAGCTCATTTTCAGCTCAAGAGCTAAACCT
* * *
80927317 TAGCTCAACTTT-AGCTCAAGGGCTAAAGCT
1 TAGCTC-ATTTTCAGCTCAAGAGCTAAACCT
80927347 TAGCTCATTTT-AGCTCAA
1 TAGCTCATTTTCAGCTCAA
80927365 ACCCAATTTT
Statistics
Matches: 61, Mismatches: 16, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
29 11 0.18
30 47 0.77
31 3 0.05
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (30 bp):
TAGCTCATTTTCAGCTCAAGAGCTAAACCT
Found at i:80929015 original size:14 final size:12
Alignment explanation
Indices: 80928969--80929011 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 12
80928959 TATACAAGTT
*
80928969 AAAAAAAATT-T
1 AAAAAAAATTCG
*
80928980 AAAAAAAATCCG
1 AAAAAAAATTCG
80928992 AAAAAAAATTCG
1 AAAAAAAATTCG
80929004 AAAAAAAA
1 AAAAAAAA
80929012 AATTGAAGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
11 9 0.32
12 19 0.68
ACGTcount: A:0.74, C:0.07, G:0.05, T:0.14
Consensus pattern (12 bp):
AAAAAAAATTCG
Found at i:80929964 original size:6 final size:5
Alignment explanation
Indices: 80929940--80929996 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
80929930 ACAAGAAAAC
*
80929940 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGA AAACGA AATA-A
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAGA AAA-GA AA-AGA
80929987 AAAGA AAAGA
1 AAAGA AAAGA
80929997 GAGGCAAAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
4 4 0.09
5 25 0.57
6 14 0.32
7 1 0.02
ACGTcount: A:0.77, C:0.04, G:0.18, T:0.02
Consensus pattern (5 bp):
AAAGA
Found at i:80929971 original size:15 final size:14
Alignment explanation
Indices: 80929940--80929996 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
80929930 ACAAGAAAAC
80929940 AAAGAAAAGAAAAGAA
1 AAAGAAAAG--AAGAA
80929956 AAAGCAAAAGAAGAA
1 AAAG-AAAAGAAGAA
*
80929971 AAAGAAAACGAAATAA
1 AAAGAAAA-G-AAGAA
80929987 AAAGAAAAGA
1 AAAGAAAAGA
80929997 GAGGCAAAAG
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
14 5 0.14
15 11 0.30
16 16 0.43
17 5 0.14
ACGTcount: A:0.77, C:0.04, G:0.18, T:0.02
Consensus pattern (14 bp):
AAAGAAAAGAAGAA
Found at i:80929975 original size:31 final size:30
Alignment explanation
Indices: 80929932--80929996 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 30
80929922 TTCTTGTAAC
80929932 AAGAAAACAAAGAAAA-GAAAAGAAAAAGCAA
1 AAGAAAACAAAGAAAACG-AAAGAAAAAG-AA
*
80929963 AAGAAGAA-AAAGAAAACGAAATAAAAAGAA
1 AAGAA-AACAAAGAAAACGAAAGAAAAAGAA
80929993 AAGA
1 AAGA
80929997 GAGGCAAAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
30 6 0.19
31 22 0.71
32 3 0.10
ACGTcount: A:0.77, C:0.05, G:0.17, T:0.02
Consensus pattern (30 bp):
AAGAAAACAAAGAAAACGAAAGAAAAAGAA
Found at i:80930096 original size:18 final size:18
Alignment explanation
Indices: 80930056--80930099 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
80930046 GAAAAAGCCT
80930056 TTGAAAAACAAAAAGAAA
1 TTGAAAAACAAAAAGAAA
* * * *
80930074 ATGAAAAATAAAATGAGA
1 TTGAAAAACAAAAAGAAA
80930092 TTGAAAAA
1 TTGAAAAA
80930100 GAGAATGAAA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.68, C:0.02, G:0.14, T:0.16
Consensus pattern (18 bp):
TTGAAAAACAAAAAGAAA
Found at i:80930161 original size:18 final size:19
Alignment explanation
Indices: 80930125--80930163 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
80930115 TTTGAGAGAG
*
80930125 AAAAAGAATGTGAACAAGA
1 AAAAAGAATGTGAAAAAGA
*
80930144 AAAAAGAGTG-GAAAAAGA
1 AAAAAGAATGTGAAAAAGA
80930162 AA
1 AA
80930164 TTGAGATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.67, C:0.03, G:0.23, T:0.08
Consensus pattern (19 bp):
AAAAAGAATGTGAAAAAGA
Found at i:80932329 original size:30 final size:31
Alignment explanation
Indices: 80932255--80932341 Score: 90
Period size: 30 Copynumber: 2.9 Consensus size: 31
80932245 CAACTCACGT
* *
80932255 GCTAAACCTTAGCTCAACTTCAGCT-TAGGA
1 GCTAAACCTTAGCTCAACTTTAGCTCAAGGA
* * *
80932285 GTTTAACCTCAGCTCAACTTTAGCTCAAGG-
1 GCTAAACCTTAGCTCAACTTTAGCTCAAGGA
* *
80932315 GCTAAAGCTTAGCTC-ATTTTAGCTCAA
1 GCTAAACCTTAGCTCAACTTTAGCTCAA
80932342 ACCTGATTTT
Statistics
Matches: 46, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
29 11 0.24
30 32 0.70
31 3 0.07
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (31 bp):
GCTAAACCTTAGCTCAACTTTAGCTCAAGGA
Found at i:80934039 original size:45 final size:45
Alignment explanation
Indices: 80933971--80934411 Score: 180
Period size: 45 Copynumber: 9.8 Consensus size: 45
80933961 TAATTTATAG
* *
80933971 CTTCAATCTGTTCCACTATAACTTCAGGAAAATAAGATTTGCTAT
1 CTTCAATCTGCTCCACTACAACTTCAGGAAAATAAGATTTGCTAT
* * *
80934016 CTTCAGTCTGCTCCACTACAACTTCAGGAAGATAAGACTTG--AT
1 CTTCAATCTGCTCCACTACAACTTCAGGAAAATAAGATTTGCTAT
* * * * * *
80934059 -TTCAACCTGCT-CACTGCTACTTCAGGGAGATAAGGTTTGCTA-
1 CTTCAATCTGCTCCACTACAACTTCAGGAAAATAAGATTTGCTAT
* * * * * *
80934101 --T-AATCTACTCTACTGCAACTTCAGAGAGATAAGATACGTTTATTT-ATAG
1 CTTCAATCTGCTCCACTACAACTTC--AG-GA-AA-ATAAG---ATTTGCTAT
** * *
80934150 CTTCAATCTATTCCACTACAACTTCAGGGAAATAAGATTCGCTAT
1 CTTCAATCTGCTCCACTACAACTTCAGGAAAATAAGATTTGCTAT
* * * * * * *
80934195 CTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTT--TAA
1 CTTCAATCTGCTCCACTACAACTTCAGGAAAATAAGATTTGCTAT
* * * *
80934238 CTTCAA-CTTGCTCCCCTGCAACTTCAAGG-AGATAAGGTTTG-T-T
1 CTTCAATC-TGCTCCACTACAACTTC-AGGAAAATAAGATTTGCTAT
* * * ** * *
80934281 -TT-GATCTGCTCTACTGCAACTTCATAGAGATAAGATCTGTAATTT-ATAG
1 CTTCAATCTGCTCCACTACAACTTC--AG-GA-AA-ATAAG--ATTTGCTAT
** ** *
80934330 CTTCAATCTATTCCACTGTAACTTCAGGGAAATAAGATTTGCTAT
1 CTTCAATCTGCTCCACTACAACTTCAGGAAAATAAGATTTGCTAT
* * *
80934375 CTTCAATTTGCTCCACTACAACTTCAGGGAGATAAGA
1 CTTCAATCTGCTCCACTACAACTTCAGGAAAATAAGA
80934412 CTTGATTTCA
Statistics
Matches: 295, Mismatches: 69, Indels: 64
0.69 0.16 0.15
Matches are distributed among these distances:
40 6 0.02
41 50 0.17
42 15 0.05
43 37 0.13
44 12 0.04
45 105 0.36
46 10 0.03
47 6 0.02
48 9 0.03
49 6 0.02
50 4 0.01
51 17 0.06
52 18 0.06
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (45 bp):
CTTCAATCTGCTCCACTACAACTTCAGGAAAATAAGATTTGCTAT
Found at i:80934366 original size:180 final size:179
Alignment explanation
Indices: 80933848--80934690 Score: 1118
Period size: 179 Copynumber: 4.7 Consensus size: 179
80933838 TGATCTACTA
* * * * * **
80933848 CACTGCAACTTTAGGGAAATAAGACTAGTGACTTTAGCCTGCTCCACTGCAACTTTTGGGAGATA
1 CACTGCAACTTCAGGGAGATAAGACT-TTGACTTCAACCTGCT-CACTGCAACTTCAGGGAGATA
* *
80933913 AGGTTTGTTTTGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTAATTTATAGCTTCAAT
64 AGGTTTGTTATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAAT
* * * *
80933978 CTGTTCCACTATAACTTCAGGAAAATAAGATTTGCTATCTTCAGTCTGCTC
129 CTATTCCACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTC
* * * *
80934029 CACTACAACTTCAGGAAGATAAGAC-TTGATTTCAACCTGCTCACTGCTACTTCAGGGAGATAAG
1 CACTGCAACTTCAGGGAGATAAGACTTTGACTTCAACCTGCTCACTGCAACTTCAGGGAGATAAG
* * * *
80934093 GTTTGCTATAATCTACTCTACTGCAACTTCAGAGAGATAAGATAC-GTTTATTTATAGCTTCAAT
66 GTTTGTTATGATCTGCTCTACTGCAACTTCAGAGAGATAAGAT-CTG-TAATTTATAGCTTCAAT
80934157 CTATTCCACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTC
129 CTATTCCACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTC
* * * * *
80934208 CACTGCAACTTTAGGGAGATAAGACTTTAACTTCAACTTGCTCCCCTGCAACTTCAAGGAGATAA
1 CACTGCAACTTCAGGGAGATAAGACTTTGACTTCAACCTGCT-CACTGCAACTTCAGGGAGATAA
* *
80934273 GGTTTGTTTTGATCTGCTCTACTGCAACTTCATAGAGATAAGATCTGTAATTTATAGCTTCAATC
65 GGTTTGTTATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATC
** * * *
80934338 TATTCCACTGTAACTTCAGGGAAATAAGATTTGCTATCTTCAATTTGCTC
130 TATTCCACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTC
* * * *
80934388 CACTACAACTTCAGGGAGATAAGAC-TTGATTTCAACCTACTCACTGCTACTTCAGGGAGATAAG
1 CACTGCAACTTCAGGGAGATAAGACTTTGACTTCAACCTGCTCACTGCAACTTCAGGGAGATAAG
* * ** * * *
80934452 GTTTGCTATGATCTGCTCTGCTATAACTTCAGAGAGATAAGATTTGTTTATTTATAGCTTCAATT
66 GTTTGTTATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTG-TAATTTATAGCTTCAATC
* * * *
80934517 TGTTCCACTGCAAGTTCAGGGAAATAAGATTCGTTATCTTCAGTCTGCTC
130 TATTCCACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTC
* * * *
80934567 CACTGCAACTTCAGGGAGATAAGACTTTAACTTTAACCTGCTCACTTCAACTTCAGGGAGATACG
1 CACTGCAACTTCAGGGAGATAAGACTTTGACTTCAACCTGCTCACTGCAACTTCAGGGAGATAAG
*
80934632 GTTTGTTATGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTAATCTT-TAGCTT
66 GTTTGTTATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAAT-TTATAGCTT
80934691 AGGGAGATAG
Statistics
Matches: 573, Mismatches: 81, Indels: 18
0.85 0.12 0.03
Matches are distributed among these distances:
178 118 0.21
179 202 0.35
180 173 0.30
181 80 0.14
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (179 bp):
CACTGCAACTTCAGGGAGATAAGACTTTGACTTCAACCTGCTCACTGCAACTTCAGGGAGATAAG
GTTTGTTATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATCT
ATTCCACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTC
Found at i:80934440 original size:137 final size:135
Alignment explanation
Indices: 80934206--80934451 Score: 296
Period size: 137 Copynumber: 1.8 Consensus size: 135
80934196 TTCAGTCTGC
* * * *
80934206 TCCACTGCAACTTTAGGGAGATAAGACTTTAACTTCAACTTGCTCCCCTGCAACTTCAAGGAGAT
1 TCCACTGCAACTTCAGGGAAATAAGACTTTAACTTCAACTTGCTCCACTACAACTTCAAGGAGAT
** ** * * *
80934271 AAGGTTTGTTTTGATCTGCTCTACTGCAACTTCATAGAGATAAGATCTGTAATTTATAGCTTCAA
66 AAGACTTGTTTCAACCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAA
80934336 TCTAT
131 TCTAT
* * * * *
80934341 TCCACTGTAACTTCAGGGAAATAAGATTTGCTATCTTCAATTTGCTCCACTACAACTTCAGGGAG
1 TCCACTGCAACTTCAGGGAAATAAGACTT--TAACTTCAACTTGCTCCACTACAACTTCAAGGAG
* *
80934406 ATAAGACTTGATTTCAACCTACTC-ACTGCTACTTCAGGGAGATAAG
64 ATAAGACTTG-TTTCAACCTACTCTACTGCAACTTCAGAGAGATAAG
80934452 GTTTGCTATG
Statistics
Matches: 90, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
135 25 0.28
137 56 0.62
138 9 0.10
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.32
Consensus pattern (135 bp):
TCCACTGCAACTTCAGGGAAATAAGACTTTAACTTCAACTTGCTCCACTACAACTTCAAGGAGAT
AAGACTTGTTTCAACCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAA
TCTAT
Found at i:80934557 original size:359 final size:359
Alignment explanation
Indices: 80933848--80934690 Score: 1330
Period size: 359 Copynumber: 2.3 Consensus size: 359
80933838 TGATCTACTA
* * * * **
80933848 CACTGCAACTTTAGGGAAATAAGACTAGTGACTTTAGCCTGCTCCACTGCAACTTTTGGGAGATA
1 CACTGCAACTTTAGGGAGATAAGACT-TTAACTTTAACCTGCTCCACTGCAACTTCAGGGAGATA
*
80933913 AGGTTTGTTTTGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTAATTTATAGCTTCAAT
65 AGGTTTGTTTTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAAT
* *
80933978 CTGTTCCACTATAACTTCAGGAAAATAAGATTTGCTATCTTCAGTCTGCTCCACTACAACTTCAG
130 CTATTCCACTATAACTTCAGGAAAATAAGATTTGCTATCTTCAATCTGCTCCACTACAACTTCAG
*
80934043 GAAGATAAGACTTGATTTCAACCTGCTCACTGCTACTTCAGGGAGATAAGGTTTGCTATAATCTA
195 GAAGATAAGACTTGATTTCAACCTACTCACTGCTACTTCAGGGAGATAAGGTTTGCTATAATCTA
*
80934108 CTCTACTGCAACTTCAGAGAGATAAGATACGTTTATTTATAGCTTCAATCTATTCCACTACAACT
260 CTCTACTACAACTTCAGAGAGATAAGATACGTTTATTTATAGCTTCAATCTATTCCACTACAACT
80934173 TCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTC
325 TCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTC
* * * *
80934208 CACTGCAACTTTAGGGAGATAAGACTTTAACTTCAACTTGCTCCCCTGCAACTTCAAGGAGATAA
1 CACTGCAACTTTAGGGAGATAAGACTTTAACTTTAACCTGCTCCACTGCAACTTCAGGGAGATAA
*
80934273 GGTTTGTTTTGATCTGCTCTACTGCAACTTCATAGAGATAAGATCTGTAATTTATAGCTTCAATC
66 GGTTTGTTTTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATC
* * *
80934338 TATTCCACTGTAACTTCAGGGAAATAAGATTTGCTATCTTCAATTTGCTCCACTACAACTTCAGG
131 TATTCCACTATAACTTCAGGAAAATAAGATTTGCTATCTTCAATCTGCTCCACTACAACTTCAGG
* * *
80934403 GAGATAAGACTTGATTTCAACCTACTCACTGCTACTTCAGGGAGATAAGGTTTGCTATGATCTGC
196 AAGATAAGACTTGATTTCAACCTACTCACTGCTACTTCAGGGAGATAAGGTTTGCTATAATCTAC
* * ** * * * *
80934468 TCTGCTATAACTTCAGAGAGATAAGATTTGTTTATTTATAGCTTCAATTTGTTCCACTGCAAGTT
261 TCTACTACAACTTCAGAGAGATAAGATACGTTTATTTATAGCTTCAATCTATTCCACTACAACTT
*
80934533 CAGGGAAATAAGATTCGTTATCTTCAGTCTGCTC
326 CAGGGAAATAAGATTCGCTATCTTCAGTCTGCTC
* * *
80934567 CACTGCAACTTCAGGGAGATAAGACTTTAACTTTAACCTGCT-CACTTCAACTTCAGGGAGATAC
1 CACTGCAACTTTAGGGAGATAAGACTTTAACTTTAACCTGCTCCACTGCAACTTCAGGGAGATAA
* *
80934631 GGTTTGTTATGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTAATCTT-TAGCTT
66 GGTTTGTTTTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAAT-TTATAGCTT
80934691 AGGGAGATAG
Statistics
Matches: 441, Mismatches: 41, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
358 72 0.16
359 344 0.78
360 25 0.06
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (359 bp):
CACTGCAACTTTAGGGAGATAAGACTTTAACTTTAACCTGCTCCACTGCAACTTCAGGGAGATAA
GGTTTGTTTTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATC
TATTCCACTATAACTTCAGGAAAATAAGATTTGCTATCTTCAATCTGCTCCACTACAACTTCAGG
AAGATAAGACTTGATTTCAACCTACTCACTGCTACTTCAGGGAGATAAGGTTTGCTATAATCTAC
TCTACTACAACTTCAGAGAGATAAGATACGTTTATTTATAGCTTCAATCTATTCCACTACAACTT
CAGGGAAATAAGATTCGCTATCTTCAGTCTGCTC
Found at i:80941122 original size:21 final size:21
Alignment explanation
Indices: 80941097--80941143 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
80941087 ATGAGTATTC
* *
80941097 AAAAATAAATAGAAATAAAAGT
1 AAAAA-AAATAAAAATAAAAAT
80941119 AAAAAAAATAAAAATAAAAAT
1 AAAAAAAATAAAAATAAAAAT
80941140 AAAA
1 AAAA
80941144 CGAGTTTGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.81, C:0.00, G:0.04, T:0.15
Consensus pattern (21 bp):
AAAAAAAATAAAAATAAAAAT
Found at i:80941137 original size:15 final size:15
Alignment explanation
Indices: 80941097--80941138 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
80941087 ATGAGTATTC
*
80941097 AAAAATAAATAGAAAT
1 AAAAATAAA-AAAAAT
*
80941113 AAAAGTAAAAAAAAT
1 AAAAATAAAAAAAAT
80941128 AAAAATAAAAA
1 AAAAATAAAAA
80941139 TAAAACGAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 15 0.65
16 8 0.35
ACGTcount: A:0.81, C:0.00, G:0.05, T:0.14
Consensus pattern (15 bp):
AAAAATAAAAAAAAT
Found at i:80956792 original size:17 final size:17
Alignment explanation
Indices: 80956772--80956807 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
80956762 TAAATAGAGA
80956772 AATAATACATA-AAATAT
1 AATAATA-ATAGAAATAT
80956789 AATAATAATAGAAATAT
1 AATAATAATAGAAATAT
80956806 AA
1 AA
80956808 ATAGAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 3 0.17
17 15 0.83
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (17 bp):
AATAATAATAGAAATAT
Found at i:80956947 original size:3 final size:3
Alignment explanation
Indices: 80956874--80956938 Score: 58
Period size: 3 Copynumber: 21.0 Consensus size: 3
80956864 AGATGGAAAT
* * * **
80956874 ATA ATA ATA GTA ATA ATGCA ATA GTA ATA ATA ATT ATA ATA GCA ATA
1 ATA ATA ATA ATA ATA AT--A ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
80956921 ATA ATA ACA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA
80956939 CCATAATAAA
Statistics
Matches: 48, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
3 45 0.94
5 3 0.06
ACGTcount: A:0.58, C:0.05, G:0.06, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:80960240 original size:45 final size:45
Alignment explanation
Indices: 80960176--80960266 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
80960166 CACAACGTTT
*
80960176 AACAATTTTTGCACTAATCTTTTCTTTCATATCATCGATTGAGAC
1 AACAATTTTTGCACTAATCTTTTCTTTCATATCATCAATTGAGAC
*
80960221 AACAATTTTTGCGCTAATCTTTTCTTTCATATCATCAATTGAGAC
1 AACAATTTTTGCACTAATCTTTTCTTTCATATCATCAATTGAGAC
80960266 A
1 A
80960267 TTTCTTTTAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.42
Consensus pattern (45 bp):
AACAATTTTTGCACTAATCTTTTCTTTCATATCATCAATTGAGAC
Found at i:80960776 original size:25 final size:23
Alignment explanation
Indices: 80960720--80960784 Score: 75
Period size: 25 Copynumber: 2.9 Consensus size: 23
80960710 TCTTATTTTT
*
80960720 TATTTGTTTTT-TGTTTT-AA--
1 TATTTGTTTTTATATTTTAAATG
80960739 TATTTGTTTTTATATTTTAAATG
1 TATTTGTTTTTATATTTTAAATG
80960762 TATTTGATTTATTATATTTTAAA
1 TATTTG-TTT-TTATATTTTAAA
80960785 GTTTTTTATT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
19 11 0.28
20 5 0.13
21 2 0.05
23 6 0.15
24 3 0.08
25 12 0.31
ACGTcount: A:0.26, C:0.00, G:0.08, T:0.66
Consensus pattern (23 bp):
TATTTGTTTTTATATTTTAAATG
Found at i:80967261 original size:21 final size:21
Alignment explanation
Indices: 80967222--80967262 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
80967212 GGCCATAATG
*
80967222 ATGTTCACACATGCCATTAAC
1 ATGTTCACACATGCAATTAAC
*
80967243 ATGTTCACACATGGAATTAA
1 ATGTTCACACATGCAATTAA
80967263 AAGCCATTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (21 bp):
ATGTTCACACATGCAATTAAC
Found at i:80976501 original size:18 final size:18
Alignment explanation
Indices: 80976474--80976522 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
80976464 ATTTTTTACG
80976474 TATAATAAATTACATAATA
1 TATAA-AAATTACATAATA
* *
80976493 TATAAAAATAACATCATA
1 TATAAAAATTACATAATA
*
80976511 TA-AAACATTACA
1 TATAAAAATTACA
80976523 AATTTACACA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
17 8 0.31
18 13 0.50
19 5 0.19
ACGTcount: A:0.59, C:0.10, G:0.00, T:0.31
Consensus pattern (18 bp):
TATAAAAATTACATAATA
Found at i:80984376 original size:16 final size:17
Alignment explanation
Indices: 80984330--80984389 Score: 54
Period size: 16 Copynumber: 3.6 Consensus size: 17
80984320 ATGGTTAGGT
* *
80984330 AATGTAAATTATTTTAA
1 AATGTAAAATATTATAA
*
80984347 TAATGTTAAA-ATTA-AA
1 -AATGTAAAATATTATAA
80984363 TAAT-TAAAATATTATAA
1 -AATGTAAAATATTATAA
80984380 AATGTAAAAT
1 AATGTAAAAT
80984390 GTATGTATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
15 4 0.11
16 13 0.37
17 11 0.31
18 7 0.20
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (17 bp):
AATGTAAAATATTATAA
Found at i:80987056 original size:9 final size:9
Alignment explanation
Indices: 80987044--80987109 Score: 64
Period size: 9 Copynumber: 7.2 Consensus size: 9
80987034 TTTATGAATT
*
80987044 TTTTTAGAA
1 TTTTTATAA
80987053 TTTTTATAA
1 TTTTTATAA
*
80987062 GTTTATATCAA
1 -TTTTTAT-AA
*
80987073 TTTTAATAA
1 TTTTTATAA
80987082 TTTTTATAA
1 TTTTTATAA
80987091 TATTTTA-AA
1 T-TTTTATAA
80987100 TTTTT-TAA
1 TTTTTATAA
80987108 TT
1 TT
80987110 ATTTTTTAAG
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
8 8 0.17
9 22 0.46
10 16 0.33
11 2 0.04
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.61
Consensus pattern (9 bp):
TTTTTATAA
Found at i:80987105 original size:29 final size:31
Alignment explanation
Indices: 80987073--80987137 Score: 82
Period size: 29 Copynumber: 2.2 Consensus size: 31
80987063 TTTATATCAA
*
80987073 TTTTAATAATTTTTATAA-TATTTTAA-AT-T
1 TTTTAATAATTTTT-TAAGAATTTTAATATGT
*
80987102 TTTTAATTATTTTTTAAGAATTTTAATATGT
1 TTTTAATAATTTTTTAAGAATTTTAATATGT
80987133 TTTTA
1 TTTTA
80987138 CAAAACTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
28 3 0.10
29 20 0.65
30 2 0.06
31 6 0.19
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (31 bp):
TTTTAATAATTTTTTAAGAATTTTAATATGT
Found at i:80987108 original size:17 final size:19
Alignment explanation
Indices: 80987080--80987114 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
80987070 CAATTTTAAT
80987080 AATTTTTATAA-TATTTTA
1 AATTTTTATAATTATTTTA
80987098 AATTTTT-TAATTATTTT
1 AATTTTTATAATTATTTT
80987115 TTAAGAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (19 bp):
AATTTTTATAATTATTTTA
Found at i:80989129 original size:26 final size:26
Alignment explanation
Indices: 80989099--80989149 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
80989089 TATAGTTTTT
80989099 CCCCTAGGAGATAAATT-ACCGAAATA
1 CCCCTAGG-GATAAATTGACCGAAATA
* *
80989125 CCCCTAGGGTTAAATTGACCTAAAT
1 CCCCTAGGGATAAATTGACCGAAAT
80989150 GCATGTTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.24
Consensus pattern (26 bp):
CCCCTAGGGATAAATTGACCGAAATA
Found at i:80991068 original size:13 final size:13
Alignment explanation
Indices: 80991050--80991080 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
80991040 TGATATTTAC
80991050 AAAAGTAGAAATT
1 AAAAGTAGAAATT
80991063 AAAAGTAGAAATT
1 AAAAGTAGAAATT
80991076 AAAAG
1 AAAAG
80991081 CTCAACTCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.65, C:0.00, G:0.16, T:0.19
Consensus pattern (13 bp):
AAAAGTAGAAATT
Found at i:80992052 original size:44 final size:46
Alignment explanation
Indices: 80991992--80992101 Score: 129
Period size: 45 Copynumber: 2.5 Consensus size: 46
80991982 TTTCATTAGA
80991992 ACGCCC-TTTCGGGTTTTCATCC-TAATCT-TTCGTGTTAATCAAG
1 ACGCCCTTTTCGGGTTTTCATCCTTAATCTCTTCGTGTTAATCAAG
* * * ** *
80992035 ACGCCCTTTTCGGGTTTTCA-CCTTGATCTCTTCTTTTTTTTTAAG
1 ACGCCCTTTTCGGGTTTTCATCCTTAATCTCTTCGTGTTAATCAAG
*
80992080 ATGCCCTTTTCGGGTTTTCATC
1 ACGCCCTTTTCGGGTTTTCATC
80992102 TTGGTTTCCT
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
43 8 0.14
44 18 0.32
45 29 0.52
46 1 0.02
ACGTcount: A:0.14, C:0.25, G:0.15, T:0.45
Consensus pattern (46 bp):
ACGCCCTTTTCGGGTTTTCATCCTTAATCTCTTCGTGTTAATCAAG
Found at i:81003637 original size:27 final size:27
Alignment explanation
Indices: 81003598--81003658 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
81003588 AATTTTGTGC
* * *
81003598 AAGA-TATATATATATAATATGATGTT
1 AAGAGTATACATATAAAATATAATGTT
81003624 AAGAGTATACATATAAAATATAATGTT
1 AAGAGTATACATATAAAATATAATGTT
*
81003651 AAAAGTAT
1 AAGAGTAT
81003659 TTATGCATAG
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.13
27 26 0.87
ACGTcount: A:0.51, C:0.02, G:0.11, T:0.36
Consensus pattern (27 bp):
AAGAGTATACATATAAAATATAATGTT
Found at i:81007877 original size:26 final size:26
Alignment explanation
Indices: 81007820--81007869 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
81007810 CATGAAATTC
*
81007820 TTATCATGAAACATTTACCTAACCCA
1 TTATCATAAAACATTTACCTAACCCA
81007846 TTATCATAAAACATTTACCTAACC
1 TTATCATAAAACATTTACCTAACC
81007870 TTTTATCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.40, C:0.26, G:0.02, T:0.32
Consensus pattern (26 bp):
TTATCATAAAACATTTACCTAACCCA
Found at i:81013628 original size:26 final size:26
Alignment explanation
Indices: 81013571--81013620 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
81013561 CATGAAATTC
81013571 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
81013597 TTATCATGAAACATTTACCTAACC
1 TTATCATGAAACATTTACCTAACC
81013621 TTTTATCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.38, C:0.26, G:0.04, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:81014388 original size:23 final size:24
Alignment explanation
Indices: 81014345--81014389 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
81014335 GTGTTGATGA
*
81014345 CTTTTAAATTTCTTTTTATTATTT
1 CTTTTAAATTTCTTTTAATTATTT
*
81014369 CTTTTTAATTT-TTTTAATTAT
1 CTTTTAAATTTCTTTTAATTAT
81014390 ACAATTATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 9 0.47
24 10 0.53
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.71
Consensus pattern (24 bp):
CTTTTAAATTTCTTTTAATTATTT
Found at i:81017636 original size:12 final size:12
Alignment explanation
Indices: 81017619--81017644 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
81017609 AAAACTGCCC
81017619 AATAGTAATAAT
1 AATAGTAATAAT
81017631 AATAGTAATAAT
1 AATAGTAATAAT
81017643 AA
1 AA
81017645 CAAGCCATGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (12 bp):
AATAGTAATAAT
Found at i:81022458 original size:24 final size:25
Alignment explanation
Indices: 81022418--81022472 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 25
81022408 ATATAATGGA
* *
81022418 AATATAATAAAATAAATGATAAA-C
1 AATATAATAAAATAAATAACAAACC
*
81022442 AATATACATGAAA-AAATAACAAACC
1 AATATA-ATAAAATAAATAACAAACC
81022467 AATATA
1 AATATA
81022473 TAATAAAACA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
24 14 0.54
25 12 0.46
ACGTcount: A:0.65, C:0.09, G:0.04, T:0.22
Consensus pattern (25 bp):
AATATAATAAAATAAATAACAAACC
Found at i:81024617 original size:86 final size:86
Alignment explanation
Indices: 81024468--81024641 Score: 285
Period size: 86 Copynumber: 2.0 Consensus size: 86
81024458 TCTCGATGCT
* *
81024468 GCCTCCATTTTAAGTTGAGAAATTTTCTCAATTGTGCTCGCTTGCATATGAGCCATCCAGTCTCT
1 GCCTCCACTTTAAGTTGAGAAATTTTCTCAATTGTGCTAGCTTGCATATGAGCCATCCAGTCTCT
*
81024533 TAACATTGAACTTTAGCTTGA
66 TAACATTGAACTTTAACTTGA
* * *
81024554 GCCTCCACTTTAAGTTGGGAAATTTTCTCAATTGTGCTAGCTTGCATATGAGTCATCCGGTCTCT
1 GCCTCCACTTTAAGTTGAGAAATTTTCTCAATTGTGCTAGCTTGCATATGAGCCATCCAGTCTCT
*
81024619 TAACATTGAATTTTAACTTGA
66 TAACATTGAACTTTAACTTGA
81024640 GC
1 GC
81024642 TGATTCACCG
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
86 81 1.00
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.37
Consensus pattern (86 bp):
GCCTCCACTTTAAGTTGAGAAATTTTCTCAATTGTGCTAGCTTGCATATGAGCCATCCAGTCTCT
TAACATTGAACTTTAACTTGA
Found at i:81031936 original size:14 final size:15
Alignment explanation
Indices: 81031906--81031953 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
81031896 TTTTCCCTTT
*
81031906 TTATCCTATTATTTA
1 TTATACTATTATTTA
81031921 TTATACTATT-TTTA
1 TTATACTATTATTTA
* *
81031935 TTATACCACTATTTA
1 TTATACTATTATTTA
81031950 TTAT
1 TTAT
81031954 TTTTATTACA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 12 0.41
15 17 0.59
ACGTcount: A:0.29, C:0.12, G:0.00, T:0.58
Consensus pattern (15 bp):
TTATACTATTATTTA
Found at i:81032025 original size:21 final size:22
Alignment explanation
Indices: 81031993--81032044 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
81031983 TTTTTACTAT
81031993 TTATT-TTAAATCATTATAT-TA
1 TTATTATT-AATCATTATATATA
* *
81032014 TTATTATTAATCTTTTTATATA
1 TTATTATTAATCATTATATATA
81032036 TT-TTATTAA
1 TTATTATTAA
81032045 AAGTTAACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 21 0.78
22 6 0.22
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.62
Consensus pattern (22 bp):
TTATTATTAATCATTATATATA
Found at i:81033662 original size:20 final size:20
Alignment explanation
Indices: 81033633--81033675 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
81033623 CAGAAAATGA
*
81033633 TTTCTAGAAAATTATTTA-TT
1 TTTCTAG-AAATGATTTACTT
*
81033653 TTTCTGGAAATGATTTACTT
1 TTTCTAGAAATGATTTACTT
81033673 TTT
1 TTT
81033676 TGGTGTTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.28, C:0.07, G:0.09, T:0.56
Consensus pattern (20 bp):
TTTCTAGAAATGATTTACTT
Found at i:81035575 original size:41 final size:39
Alignment explanation
Indices: 81035526--81035611 Score: 126
Period size: 35 Copynumber: 2.3 Consensus size: 39
81035516 CTCTAAGTCT
81035526 CTTAACAAAACAAAAACCAAATATACCAAATACCCTTACC
1 CTTAACAAAAC-AAAACCAAATATACCAAATACCCTTACC
81035566 CTT-AC---ACAAAACCAAATATACCAAATACCCTTACC
1 CTTAACAAAACAAAACCAAATATACCAAATACCCTTACC
81035601 CTTACACAAAA
1 CTTA-ACAAAA
81035612 GCTAATTCAA
Statistics
Matches: 41, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
35 31 0.76
36 2 0.05
37 2 0.05
39 2 0.05
40 4 0.10
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (39 bp):
CTTAACAAAACAAAACCAAATATACCAAATACCCTTACC
Found at i:81035582 original size:35 final size:35
Alignment explanation
Indices: 81035538--81035611 Score: 148
Period size: 35 Copynumber: 2.1 Consensus size: 35
81035528 TAACAAAACA
81035538 AAAACCAAATATACCAAATACCCTTACCCTTACAC
1 AAAACCAAATATACCAAATACCCTTACCCTTACAC
81035573 AAAACCAAATATACCAAATACCCTTACCCTTACAC
1 AAAACCAAATATACCAAATACCCTTACCCTTACAC
81035608 AAAA
1 AAAA
81035612 GCTAATTCAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.49, C:0.32, G:0.00, T:0.19
Consensus pattern (35 bp):
AAAACCAAATATACCAAATACCCTTACCCTTACAC
Found at i:81036413 original size:18 final size:19
Alignment explanation
Indices: 81036381--81036416 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
81036371 GTAATTTTTA
81036381 AAATTCAAAATATTTATAG
1 AAATTCAAAATATTTATAG
*
81036400 AAATTCTAAA-ATTTATA
1 AAATTCAAAATATTTATA
81036417 TTTTTTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.39
Consensus pattern (19 bp):
AAATTCAAAATATTTATAG
Found at i:81036454 original size:20 final size:18
Alignment explanation
Indices: 81036407--81036451 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
81036397 TAGAAATTCT
81036407 AAAATTTAT-ATTTTTTA
1 AAAATTTATAATTTTTTA
81036424 AAAATTTATAATTTTTTA
1 AAAATTTATAATTTTTTA
*
81036442 AAAATATATA
1 AAAATTTATA
81036452 TAAAAATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 9 0.35
18 17 0.65
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
AAAATTTATAATTTTTTA
Found at i:81036782 original size:21 final size:21
Alignment explanation
Indices: 81036758--81036797 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
81036748 GCCTTTTCTA
*
81036758 AAGTTAAAAGTCAAAACTATC
1 AAGTTAAAAGGCAAAACTATC
*
81036779 AAGTTAGAAGGCAAAACTA
1 AAGTTAAAAGGCAAAACTA
81036798 CGTTATTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.53, C:0.12, G:0.15, T:0.20
Consensus pattern (21 bp):
AAGTTAAAAGGCAAAACTATC
Found at i:81037895 original size:92 final size:92
Alignment explanation
Indices: 81037735--81037918 Score: 289
Period size: 92 Copynumber: 2.0 Consensus size: 92
81037725 TATGTTTGAA
* * *
81037735 ATGTTATATTTTAGTCACTTACGTCATCATTTTATTACGAAGTGGTCACTCTACTATTAAATTCT
1 ATGTTATACTTTAGTCACTTACGTCATCATTTTATTACGAAATGGTCACTCTACCATTAAATTCT
* *
81037800 GTTACCTCCCTAATGGCAGTCCTACGT
66 GTTACCTCCCTAATGACAATCCTACGT
* *
81037827 ATGTTATACTTTAGTCACTTACGTCATCATTTTGTTACGAAATGGTCACTCTACCGTTAAACTT-
1 ATGTTATACTTTAGTCACTTACGTCATCATTTTATTACGAAATGGTCACTCTACCATTAAA-TTC
81037891 TGTTACCTCCCTAATGACAATCCTACGT
65 TGTTACCTCCCTAATGACAATCCTACGT
81037919 GGTAGTCCAA
Statistics
Matches: 84, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
92 82 0.98
93 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.12, T:0.39
Consensus pattern (92 bp):
ATGTTATACTTTAGTCACTTACGTCATCATTTTATTACGAAATGGTCACTCTACCATTAAATTCT
GTTACCTCCCTAATGACAATCCTACGT
Found at i:81041471 original size:19 final size:19
Alignment explanation
Indices: 81041448--81041500 Score: 61
Period size: 21 Copynumber: 2.6 Consensus size: 19
81041438 ATAATATTGC
81041448 ATAAACATATACATATATA
1 ATAAACATATACATATATA
* *
81041467 TTAAAGGTATATACATATATA
1 ATAAA--CATATACATATATA
81041488 ATAGAACATATAC
1 ATA-AACATATAC
81041501 TAACAATAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
19 4 0.15
20 6 0.22
21 15 0.56
22 2 0.07
ACGTcount: A:0.53, C:0.09, G:0.06, T:0.32
Consensus pattern (19 bp):
ATAAACATATACATATATA
Found at i:81042685 original size:17 final size:17
Alignment explanation
Indices: 81042665--81042722 Score: 61
Period size: 17 Copynumber: 3.6 Consensus size: 17
81042655 ATATTTAATG
81042665 ATATAATATATAAAAAT
1 ATATAATATATAAAAAT
*
81042682 ATAT--T-TATAAGAAT
1 ATATAATATATAAAAAT
81042696 A-ATAATTATATAAAAAT
1 ATATAA-TATATAAAAAT
*
81042713 ATAAAATATA
1 ATATAATATA
81042723 ATGGTTTAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 10
0.72 0.07 0.22
Matches are distributed among these distances:
13 2 0.06
14 9 0.27
15 1 0.03
16 1 0.03
17 17 0.52
18 3 0.09
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (17 bp):
ATATAATATATAAAAAT
Found at i:81043007 original size:18 final size:19
Alignment explanation
Indices: 81042984--81043025 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
81042974 CAATATGTAG
* *
81042984 ATAAAAAT-ACTTAATAGT
1 ATAAAAATGACATAATAAT
81043002 AT-AAAATGACATAATAAT
1 ATAAAAATGACATAATAAT
81043020 ATAAAA
1 ATAAAA
81043026 TAAATATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 5 0.25
18 12 0.60
19 3 0.15
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.29
Consensus pattern (19 bp):
ATAAAAATGACATAATAAT
Found at i:81043036 original size:16 final size:17
Alignment explanation
Indices: 81042995--81043043 Score: 55
Period size: 18 Copynumber: 2.9 Consensus size: 17
81042985 TAAAAATACT
* *
81042995 TAATAGTATAAAATGACA
1 TAATAATATAAAAT-AAA
81043013 TAATAATATAAAATAAA
1 TAATAATATAAAATAAA
*
81043030 T-ATAATATATAATA
1 TAATAATATAAAATA
81043044 TGAAAGTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 12 0.43
17 3 0.11
18 13 0.46
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (17 bp):
TAATAATATAAAATAAA
Found at i:81043122 original size:20 final size:19
Alignment explanation
Indices: 81043012--81043122 Score: 102
Period size: 20 Copynumber: 5.6 Consensus size: 19
81043002 ATAAAATGAC
81043012 ATAATAATATAAAATAA-AT
1 ATAAT-ATATAAAATAATAT
*
81043031 ATAATATATAATATGAA-AGT
1 ATAATATATAAAAT-AATA-T
*
81043051 AT-ATATGTGAAAATAATAT
1 ATAATATAT-AAAATAATAT
*
81043070 ATAGTATATATAAATAATAT
1 ATAATATATA-AAATAATAT
81043090 GAGTAATATATAAAATAATCAT
1 -A-TAATATATAAAATAAT-AT
81043112 ATAATATATAA
1 ATAATATATAA
81043123 TTTAAAAATA
Statistics
Matches: 77, Mismatches: 6, Indels: 17
0.77 0.06 0.17
Matches are distributed among these distances:
18 8 0.10
19 19 0.25
20 31 0.40
21 9 0.12
22 10 0.13
ACGTcount: A:0.58, C:0.01, G:0.06, T:0.35
Consensus pattern (19 bp):
ATAATATATAAAATAATAT
Found at i:81044819 original size:17 final size:19
Alignment explanation
Indices: 81044785--81044821 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
81044775 ATAGCTAAAT
81044785 ATAATATAATAATGATAATA
1 ATAATATAATAA-GATAATA
81044805 ATAATATAA-AA-ATAATA
1 ATAATATAATAAGATAATA
81044822 GTGATAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 6 0.35
19 2 0.12
20 9 0.53
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (19 bp):
ATAATATAATAAGATAATA
Found at i:81044826 original size:26 final size:26
Alignment explanation
Indices: 81044782--81044838 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
81044772 AATATAGCTA
* *
81044782 AATAT-AATATAATAATGATAATAAT
1 AATATAAAAATAATAATGATAACAAT
*
81044807 AATATAAAAATAATAGTGATAACAAT
1 AATATAAAAATAATAATGATAACAAT
*
81044833 ACTATA
1 AATATA
81044839 TATAACATGA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
25 5 0.19
26 22 0.81
ACGTcount: A:0.60, C:0.04, G:0.05, T:0.32
Consensus pattern (26 bp):
AATATAAAAATAATAATGATAACAAT
Found at i:81045483 original size:11 final size:11
Alignment explanation
Indices: 81045459--81045494 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
81045449 AGGTAAGTTC
81045459 TTTTTTATAT-
1 TTTTTTATATA
81045469 TTTTTTATATA
1 TTTTTTATATA
*
81045480 TTTTTTACATA
1 TTTTTTATATA
81045491 TTTT
1 TTTT
81045495 AAGTTTATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 10 0.42
11 14 0.58
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (11 bp):
TTTTTTATATA
Found at i:81046761 original size:14 final size:14
Alignment explanation
Indices: 81046742--81046776 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
81046732 TAATTGATTT
*
81046742 TTGAAAAACATAAA
1 TTGAAAAACAAAAA
81046756 TTGAAAAACAAAAA
1 TTGAAAAACAAAAA
81046770 TTGAAAA
1 TTGAAAA
81046777 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.66, C:0.06, G:0.09, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAAAAA
Found at i:81046907 original size:17 final size:17
Alignment explanation
Indices: 81046885--81046918 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
81046875 TCAACTCATC
81046885 TCTCGCAATATGAGTTG
1 TCTCGCAATATGAGTTG
81046902 TCTCGCAATATGAGTTG
1 TCTCGCAATATGAGTTG
81046919 ATTTTTTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.35
Consensus pattern (17 bp):
TCTCGCAATATGAGTTG
Found at i:81046925 original size:94 final size:92
Alignment explanation
Indices: 81046808--81046989 Score: 220
Period size: 92 Copynumber: 2.0 Consensus size: 92
81046798 TCAACTCACC
* * * *
81046808 TCTCGCAATACAATTTGACTTTTTAAAAAAAAAAGAATTGAAAATACCTCAGCGTGTGACCTGAG
1 TCTCGCAATACAAGTTGACTTTTT-AAAAAAAAA-AATTAAAAATACCTCAGCATGTGACCCGAG
* *
81046873 GCTCAACTCATCTCTCGCAATATGAGTTG
64 GCTCAACTCACCTCTAGCAATATGAGTTG
** * ** * * *
81046902 TCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTAAAAATACCTCGGCATGTGACCCGAGGC
1 TCTCGCAATACAAGTTGACTTTTTAAAAAAAAAAATTAAAAATACCTCAGCATGTGACCCGAGGC
81046967 TCAACTCACCTCTAGCAATATGA
66 TCAACTCACCTCTAGCAATATGA
81046990 ATTGATTTTT
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
92 49 0.66
93 5 0.07
94 20 0.27
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (92 bp):
TCTCGCAATACAAGTTGACTTTTTAAAAAAAAAAATTAAAAATACCTCAGCATGTGACCCGAGGC
TCAACTCACCTCTAGCAATATGAGTTG
Found at i:81047017 original size:14 final size:14
Alignment explanation
Indices: 81046998--81047032 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
81046988 GAATTGATTT
*
81046998 TTGAAAAACATAAA
1 TTGAAAAACAGAAA
*
81047012 TTGAAAAACAGAAT
1 TTGAAAAACAGAAA
81047026 TTGAAAA
1 TTGAAAA
81047033 TACCTCAGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.60, C:0.06, G:0.11, T:0.23
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:81047064 original size:87 final size:89
Alignment explanation
Indices: 81046928--81047121 Score: 248
Period size: 89 Copynumber: 2.2 Consensus size: 89
81046918 GATTTTTTTG
* * * *
81046928 AAACATAAATTAAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAATT
1 AAACAAAAATTGAAAATACCTCAGCATGT-ACCCGAGGCTCAACTCACCTATAGCAATATGAATT
*
81046993 GA-TTTTTGAAAAACATAAATTGAA
65 GATTTTTTGAAAAACAAAAATTGAA
* * * * *
81047017 AAACAGAATTTGAAAATACCTCAGCATGT-CCTGAGGCTCAACTCACCTATCGCAATATGAGTTG
1 AAACAAAAATTGAAAATACCTCAGCATGTACCCGAGGCTCAACTCACCTATAGCAATATGAATTG
*
81047081 ATTTTTTTGAAAAGCAAAAATTGAA
66 A-TTTTTTGAAAAACAAAAATTGAA
*
81047106 AAGCAAAAATTGAAAA
1 AAACAAAAATTGAAAA
81047122 GCAGACATTG
Statistics
Matches: 90, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
87 32 0.36
89 58 0.64
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (89 bp):
AAACAAAAATTGAAAATACCTCAGCATGTACCCGAGGCTCAACTCACCTATAGCAATATGAATTG
ATTTTTTGAAAAACAAAAATTGAA
Found at i:81047106 original size:14 final size:14
Alignment explanation
Indices: 81047087--81047135 Score: 80
Period size: 14 Copynumber: 3.5 Consensus size: 14
81047077 GTTGATTTTT
81047087 TTGAAAAGCAAAAA
1 TTGAAAAGCAAAAA
81047101 TTGAAAAGCAAAAA
1 TTGAAAAGCAAAAA
* *
81047115 TTGAAAAGCAGACA
1 TTGAAAAGCAAAAA
81047129 TTGAAAA
1 TTGAAAA
81047136 TACCTCAGCG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 33 1.00
ACGTcount: A:0.59, C:0.08, G:0.16, T:0.16
Consensus pattern (14 bp):
TTGAAAAGCAAAAA
Found at i:81047177 original size:103 final size:103
Alignment explanation
Indices: 81046998--81047189 Score: 305
Period size: 103 Copynumber: 1.9 Consensus size: 103
81046988 GAATTGATTT
* * *
81046998 TTGAAAAACATAAATTGAAAAACAGAATTTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCAC
1 TTGAAAAACAAAAATTGAAAAACAGAATTTGAAAATACCTCAGCATGCCCTAAGGCTCAACTCAC
81047063 CTATCGCAATATGAGTTGATTTTTTTGAAAAGCAAAAA
66 CTATCGCAATATGAGTTGATTTTTTTGAAAAGCAAAAA
* * *
81047101 TTGAAAAGCAAAAATTGAAAAGCAGACA-TTGAAAATACCTCAGCGTGCCCTAAGGCTCAACTCA
1 TTGAAAAACAAAAATTGAAAAACAGA-ATTTGAAAATACCTCAGCATGCCCTAAGGCTCAACTCA
*
81047165 CCTCTCGCAATATGAGTTGATTTTT
65 CCTATCGCAATATGAGTTGATTTTT
81047190 GACAAACAGA
Statistics
Matches: 81, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
103 80 0.99
104 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.27
Consensus pattern (103 bp):
TTGAAAAACAAAAATTGAAAAACAGAATTTGAAAATACCTCAGCATGCCCTAAGGCTCAACTCAC
CTATCGCAATATGAGTTGATTTTTTTGAAAAGCAAAAA
Found at i:81047247 original size:73 final size:73
Alignment explanation
Indices: 81047115--81047425 Score: 419
Period size: 73 Copynumber: 4.2 Consensus size: 73
81047105 AAAGCAAAAA
* *
81047115 TTGAAAAGCAGACATTGAAAATACCTCAGCGTGCCCTAAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAA-CAGAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGA
81047180 GTTGA-TTT
65 GTTGATTTT
* *
81047188 TTGACAAACAGAAATTGAAATTACCTCAGTGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGA
81047253 GTTGATTTTT
65 GTTGA-TTTT
* * * * *
81047263 TTGAAAGACAGAAATTGAAAATTACCTCAGCATGTCTTGAGGCTCAACTCATCTCTCGCAACATG
1 TTGAAA-ACAGAAATTGAAAA-TACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATG
81047328 AGTTGATTTTT
64 AGTTGA-TTTT
* * * * *
81047339 TTGAAAGATAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGTAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGA
81047404 GTTGA-TTT
65 GTTGATTTT
81047412 TTGAAAACAGAAAT
1 TTGAAAACAGAAAT
81047426 AAAAACATCA
Statistics
Matches: 215, Mismatches: 18, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
72 7 0.03
73 71 0.33
74 5 0.02
75 64 0.30
76 68 0.32
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (73 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTT
Found at i:81048267 original size:43 final size:44
Alignment explanation
Indices: 81048189--81048304 Score: 128
Period size: 43 Copynumber: 2.6 Consensus size: 44
81048179 TAGAATGCCC
* * * * *
81048189 TTTCAGGTTTTCATCTTAAT-CTTTTGTGTTAATCAAGATACCCT
1 TTTCGGGTTTTCACCTTGATCCTTTT-TATTAATCAAGACACCCT
* *
81048233 TTTCGGGTTTTCACCTTGATCCTTTTTATT-ATCAAGACGCCTT
1 TTTCGGGTTTTCACCTTGATCCTTTTTATTAATCAAGACACCCT
81048276 TTTCGGGTTTTCACCTTGATTCCCTTTTT
1 TTTCGGGTTTTCACCTTGA-T-CCTTTTT
81048305 TTTAGGCATA
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
43 29 0.47
44 21 0.34
45 12 0.19
ACGTcount: A:0.16, C:0.22, G:0.13, T:0.49
Consensus pattern (44 bp):
TTTCGGGTTTTCACCTTGATCCTTTTTATTAATCAAGACACCCT
Found at i:81054937 original size:26 final size:26
Alignment explanation
Indices: 81054908--81054960 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
81054898 TCAAACATGC
81054908 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
81054934 ATTTTGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
81054960 A
1 A
81054961 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:81056502 original size:26 final size:26
Alignment explanation
Indices: 81056445--81056494 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
81056435 CATGAAATTC
81056445 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
81056471 TTATCATGAAACATTTACCTAACC
1 TTATCATGAAACATTTACCTAACC
81056495 TTTTATCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.38, C:0.26, G:0.04, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:81056513 original size:10 final size:10
Alignment explanation
Indices: 81056498--81056522 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
81056488 CCTAACCTTT
81056498 TATCAATTTG
1 TATCAATTTG
81056508 TATCAATTTG
1 TATCAATTTG
81056518 TATCA
1 TATCA
81056523 TAAATTATGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.12, G:0.08, T:0.48
Consensus pattern (10 bp):
TATCAATTTG
Found at i:81060371 original size:12 final size:12
Alignment explanation
Indices: 81060336--81060393 Score: 59
Period size: 12 Copynumber: 5.0 Consensus size: 12
81060326 TAAAATAAAG
81060336 TAATAAGTGATAA
1 TAATAAGT-ATAA
*
81060349 TAAT--G-AAAA
1 TAATAAGTATAA
81060358 TAATAAGTATAA
1 TAATAAGTATAA
*
81060370 TAATAAATATAA
1 TAATAAGTATAA
*
81060382 TAATAAATATAA
1 TAATAAGTATAA
81060394 CACTATATGA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
9 7 0.18
11 2 0.05
12 26 0.67
13 4 0.10
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31
Consensus pattern (12 bp):
TAATAAGTATAA
Found at i:81060377 original size:19 final size:19
Alignment explanation
Indices: 81060316--81060378 Score: 67
Period size: 21 Copynumber: 3.2 Consensus size: 19
81060306 CAAATAACAC
81060316 ATAATAA-TATTAA-AATAA
1 ATAATAAGTA-TAATAATAA
81060334 AGTAATAAGTGATAATAATGAAA
1 A-TAATAAGT-ATAATAAT--AA
81060357 ATAATAAGTATAATAATAA
1 ATAATAAGTATAATAATAA
81060376 ATA
1 ATA
81060379 TAATAATAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
18 1 0.03
19 11 0.28
20 4 0.10
21 12 0.31
22 8 0.21
23 3 0.08
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.30
Consensus pattern (19 bp):
ATAATAAGTATAATAATAA
Found at i:81060552 original size:3 final size:3
Alignment explanation
Indices: 81060539--81060587 Score: 66
Period size: 3 Copynumber: 17.0 Consensus size: 3
81060529 ATAGCTAAAT
* *
81060539 ATA AT- ATA ATA ATA ATA ATA AAA ATA ATA ATA ATA AT- ATA AAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
81060585 ATA
1 ATA
81060588 GTGATAACAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
2 4 0.10
3 36 0.90
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:81069863 original size:21 final size:21
Alignment explanation
Indices: 81069825--81069865 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
81069815 GTTCTGCTCC
* *
81069825 GCCTCCCTCGCTGTTGCCTCT
1 GCCTCCCGCGCTGCTGCCTCT
*
81069846 GCCTCCCGCTCTGCTGCCTC
1 GCCTCCCGCGCTGCTGCCTC
81069866 CGCTCTAAGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.00, C:0.51, G:0.20, T:0.29
Consensus pattern (21 bp):
GCCTCCCGCGCTGCTGCCTCT
Found at i:81071668 original size:22 final size:24
Alignment explanation
Indices: 81071628--81071686 Score: 68
Period size: 22 Copynumber: 2.5 Consensus size: 24
81071618 GTTTAATTAG
*
81071628 GGTTTATTAAATCAAGGTT-TA-T
1 GGTTTATTAAATTAAGGTTATAGT
*
81071650 GGTTTATTAAATTACGGTTATAGT
1 GGTTTATTAAATTAAGGTTATAGT
* *
81071674 GTTTTATTTAATT
1 GGTTTATTAAATT
81071687 TTTAAGTGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
22 17 0.55
23 2 0.06
24 12 0.39
ACGTcount: A:0.29, C:0.03, G:0.17, T:0.51
Consensus pattern (24 bp):
GGTTTATTAAATTAAGGTTATAGT
Found at i:81071765 original size:21 final size:20
Alignment explanation
Indices: 81071737--81071789 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 20
81071727 AATGATTTTA
81071737 TTATTAGGGTTTTAGGTGTG
1 TTATTAGGGTTTTAGGTGTG
* *
81071757 TTAATTAGGGTTTTTGGTTTG
1 TT-ATTAGGGTTTTAGGTGTG
81071778 TT-TTAGGGTTTT
1 TTATTAGGGTTTT
81071790 GGATTTTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 10 0.33
20 2 0.07
21 18 0.60
ACGTcount: A:0.13, C:0.00, G:0.30, T:0.57
Consensus pattern (20 bp):
TTATTAGGGTTTTAGGTGTG
Found at i:81084649 original size:17 final size:18
Alignment explanation
Indices: 81084623--81084656 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
81084613 TAATTTTGCA
81084623 TAAATATGAATTATAGAT
1 TAAATATGAATTATAGAT
*
81084641 TAAAT-TGAATTCTAGA
1 TAAATATGAATTATAGA
81084657 AGTACTTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.47, C:0.03, G:0.12, T:0.38
Consensus pattern (18 bp):
TAAATATGAATTATAGAT
Found at i:81088274 original size:35 final size:34
Alignment explanation
Indices: 81088206--81088274 Score: 93
Period size: 35 Copynumber: 2.0 Consensus size: 34
81088196 GTAAGTAATT
*
81088206 TATCCTCTTTCCTATTTGACAATACATGTTTTTA
1 TATCCTCTTTCCTATTTGACAATACATGGTTTTA
* **
81088240 TATCCTCTTTTCTTATTTGACAATTTATGGTTTTA
1 TATCCTC-TTTCCTATTTGACAATACATGGTTTTA
81088275 ATTTGATATG
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
34 7 0.23
35 23 0.77
ACGTcount: A:0.22, C:0.17, G:0.07, T:0.54
Consensus pattern (34 bp):
TATCCTCTTTCCTATTTGACAATACATGGTTTTA
Found at i:81099540 original size:39 final size:40
Alignment explanation
Indices: 81099482--81099661 Score: 105
Period size: 40 Copynumber: 4.5 Consensus size: 40
81099472 AATCAAGCAT
* * *
81099482 CTTCGGGT-TT-AGCCGGATATAACCACTCGCA-CAAGGC
1 CTTCGGGTCTTAACCCGGATATAACCACTAGCATAAAGGC
*** *
81099519 CTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAACCCGGATATAACCACTAGCATAAAGGC
* * ** * * *
81099559 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAACCCGGATATAACCACTAGCATAAAGGC
* ** * ** * * *
81099599 CTTCGGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAAGC
1 CTTCGGGTCTTAACCCGGATATAACCAC-TAGCATAAAGGC
* *
81099640 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAACCCGGATAT
81099662 CATTCGAGTA
Statistics
Matches: 118, Mismatches: 21, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
37 8 0.07
38 2 0.02
39 16 0.14
40 63 0.53
41 29 0.25
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAACCCGGATATAACCACTAGCATAAAGGC
Found at i:81099644 original size:41 final size:40
Alignment explanation
Indices: 81099517--81099661 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
81099507 CTCGCACAAG
* * * * *
81099517 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
81099557 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
81099597 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
81099638 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
81099662 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:81107631 original size:41 final size:40
Alignment explanation
Indices: 81107505--81107648 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
81107495 CTCGCACAAG
* * * * *
81107505 GCCTTC-GGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
81107544 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
81107584 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
81107625 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
81107649 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
39 9 0.10
40 52 0.57
41 27 0.30
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:81110578 original size:22 final size:21
Alignment explanation
Indices: 81110537--81110589 Score: 70
Period size: 22 Copynumber: 2.5 Consensus size: 21
81110527 TAATAATAGC
* *
81110537 AATAGTAATTACAAAAATGAT
1 AATAGTAATAAAAAAAATGAT
81110558 AATAGTAATAAAATAAAATGAT
1 AATAGTAATAAAA-AAAATGAT
*
81110580 AATAATAATA
1 AATAGTAATA
81110590 TTAATAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 11 0.39
22 17 0.61
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.28
Consensus pattern (21 bp):
AATAGTAATAAAAAAAATGAT
Found at i:81110742 original size:94 final size:94
Alignment explanation
Indices: 81110574--81110745 Score: 213
Period size: 94 Copynumber: 1.8 Consensus size: 94
81110564 AATAAAATAA
* * * * *
81110574 AATGATAATAATAATATTAATAATAATAGAAGTAAAAAAATAAAATAGTAATAACAGTAAAAAAA
1 AATGATAACAATAATATAAATAATAATAGAAGTAAAAAAATAAAATAGTAAAAAAAATAAAAAAA
81110639 ATAGCAATAATAAGAATAGTAATAACAGT
66 ATAGCAATAATAAGAATAGTAATAACAGT
* * * *
81110668 AATGATAACAATAATATAAATAATAATA-TA-TATGAAAAATAATAATAGTAAAAAAAATAATAG
1 AATGATAACAATAATATAAATAATAATAGAAGTA-AAAAAATAA-AATAGTAAAAAAAATAAAAA
* *
81110731 AAGTAGTAATAATAA
64 AAATAGCAATAATAA
81110746 TGGTATTAGA
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
92 2 0.03
93 9 0.14
94 54 0.83
ACGTcount: A:0.63, C:0.02, G:0.09, T:0.26
Consensus pattern (94 bp):
AATGATAACAATAATATAAATAATAATAGAAGTAAAAAAATAAAATAGTAAAAAAAATAAAAAAA
ATAGCAATAATAAGAATAGTAATAACAGT
Found at i:81110746 original size:3 final size:3
Alignment explanation
Indices: 81110519--81110729 Score: 76
Period size: 3 Copynumber: 71.3 Consensus size: 3
81110509 ATAGTTAAAA
** * * * * * *
81110519 AAT AAT AAT AAT AAT AGC AAT AGT AAT TAC AAA AAT GAT AAT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
81110567 AA- AAT AA- AAT GAT AAT AAT AAT ATT AAT AAT AAT AGA- AGT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT
* * * * * * ** *
81110609 AAA AAT AA- AAT AGT AAT AAC AGT AAA AAA AAT AGC AAT AAT AAG AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
81110656 AGT AAT AAC AGT AAT GAT AAC AAT AAT -AT AAAT AAT AAT -AT ATAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT A-AT
* * * *
81110701 GAAA AAT AAT AAT AGT AAA AAA AAT AAT A
1 -AAT AAT AAT AAT AAT AAT AAT AAT AAT A
81110730 GAAGTAGTAA
Statistics
Matches: 145, Mismatches: 52, Indels: 22
0.66 0.24 0.10
Matches are distributed among these distances:
2 12 0.08
3 126 0.87
4 6 0.04
5 1 0.01
ACGTcount: A:0.64, C:0.03, G:0.08, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:81110797 original size:15 final size:15
Alignment explanation
Indices: 81110521--81110804 Score: 89
Period size: 15 Copynumber: 19.9 Consensus size: 15
81110511 AGTTAAAAAA
81110521 TAATAATAATAATAG
1 TAATAATAATAATAG
* *
81110536 CAATAGTAAT--TA-
1 TAATAATAATAATAG
* * *
81110548 CAAAAATGATAATAG
1 TAATAATAATAATAG
*
81110563 TAATAA-AATAA-AA
1 TAATAATAATAATAG
*
81110576 TGATAATAATAATA-
1 TAATAATAATAATAG
81110590 T--TAATAATAATAG
1 TAATAATAATAATAG
*
81110603 -AAGTAA-AAAAATA-
1 TAA-TAATAATAATAG
* * *
81110616 AAATAGTAATAACAG
1 TAATAATAATAATAG
81110631 TAA-AA-AA-AATAG
1 TAATAATAATAATAG
* *
81110643 CAATAATAAGAATAG
1 TAATAATAATAATAG
* *
81110658 TAATAACAGTAAT-G
1 TAATAATAATAATAG
*
81110672 --ATAACAATAATA-
1 TAATAATAATAATAG
81110684 TAAATAATAATATATA-
1 T-AATAATAATA-ATAG
*
81110700 TGAAAAATAATAATAG
1 T-AATAATAATAATAG
* *
81110716 TAAAAAAAATAATAGAAG
1 TAATAATAATAAT---AG
* *
81110734 TAGTAATAATAATGG
1 TAATAATAATAATAG
*
81110749 TATTAGAATAA-AATA-
1 TA--ATAATAATAATAG
81110764 -AAT-ATAAATACA-AG
1 TAATAAT-AATA-ATAG
81110778 T-ATAATAATAATAG
1 TAATAATAATAATAG
81110792 TAATAAT-ATAATA
1 TAATAATAATAATA
81110805 AAACAAAAAA
Statistics
Matches: 200, Mismatches: 35, Indels: 69
0.66 0.12 0.23
Matches are distributed among these distances:
11 2 0.01
12 37 0.19
13 17 0.09
14 46 0.23
15 64 0.32
16 17 0.09
17 5 0.03
18 12 0.06
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.27
Consensus pattern (15 bp):
TAATAATAATAATAG
Found at i:81116267 original size:12 final size:12
Alignment explanation
Indices: 81116250--81116315 Score: 53
Period size: 12 Copynumber: 5.4 Consensus size: 12
81116240 TTTTTATTTA
*
81116250 TATATTATTCAT
1 TATATTATACAT
**
81116262 TATATTAT-TTT
1 TATATTATACAT
81116273 TATTATTATACAT
1 TA-TATTATACAT
* *
81116286 TTTATTTATAAAT
1 TATA-TTATACAT
*
81116299 TTTATTATACAT
1 TATATTATACAT
81116311 TATAT
1 TATAT
81116316 GTTTTACTAT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
11 3 0.07
12 27 0.63
13 13 0.30
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.61
Consensus pattern (12 bp):
TATATTATACAT
Found at i:81116294 original size:25 final size:25
Alignment explanation
Indices: 81116236--81116311 Score: 66
Period size: 25 Copynumber: 3.0 Consensus size: 25
81116226 ATAGTGTGTA
* *
81116236 TTATTTTTTATTTATATATTATTCATT
1 TTATTTATT-TTTAT-TATTATACATT
*
81116263 ATA-TTATTTTTATTATTATACATT
1 TTATTTATTTTTATTATTATACATT
**
81116287 TTATTTATAAATT-TTATTATACATT
1 TTATTTAT-TTTTATTATTATACATT
81116312 ATATGTTTTA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
24 12 0.29
25 21 0.51
26 6 0.15
27 2 0.05
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (25 bp):
TTATTTATTTTTATTATTATACATT
Done.