Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 25 of 290
Found at i:8114503 original size:78 final size:76
Alignment explanation
Indices: 8114344--8114496 Score: 234
Period size: 78 Copynumber: 2.0 Consensus size: 76
8114334 AGATATGCCA
* *
8114344 AATCTGTTATCTCCGATTTGCTCCCCATCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTC
1 AATCTGTTATCTCCGATCTGCTCCCCATCTAATACAGAGATGCCAAATCATATTGGATCTGCTTC
*
8114409 AGTGAAGGTCC
66 AATGAAGGTCC
* *
8114420 AATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATATTGGATCTGCT
1 AATCTGTTA--TCTCCGATCTGCTCCCCATCTAATACAGAGATGCCAAATCATATTGGATCTGCT
*
8114485 TTAATGAAGGTC
64 TCAATGAAGGTC
8114497 AGATCTGCTC
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
76 9 0.13
78 60 0.87
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (76 bp):
AATCTGTTATCTCCGATCTGCTCCCCATCTAATACAGAGATGCCAAATCATATTGGATCTGCTTC
AATGAAGGTCC
Found at i:8114513 original size:62 final size:62
Alignment explanation
Indices: 8114436--8114567 Score: 237
Period size: 62 Copynumber: 2.1 Consensus size: 62
8114426 TTATGTCTTC
*
8114436 GATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATATTGGATCTGCTTTAATGAAGGTCA
1 GATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATATTGGATCTGCTTCAATGAAGGTCA
* *
8114498 GATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTTA
1 GATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATATTGGATCTGCTTCAATGAAGGTCA
8114560 GATCTGCT
1 GATCTGCT
8114568 ATATCTTCAA
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 67 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (62 bp):
GATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATATTGGATCTGCTTCAATGAAGGTCA
Found at i:8126408 original size:17 final size:19
Alignment explanation
Indices: 8126386--8126420 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8126376 GATATGATAC
8126386 TAAAAT-TAT-TAAAAAAT
1 TAAAATATATATAAAAAAT
8126403 TAAAATATATATAAAAAA
1 TAAAATATATATAAAAAA
8126421 ATTCGGGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 3 0.19
19 7 0.44
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
TAAAATATATATAAAAAAT
Found at i:8126711 original size:22 final size:21
Alignment explanation
Indices: 8126676--8126770 Score: 65
Period size: 18 Copynumber: 4.7 Consensus size: 21
8126666 AAAAGGTATC
* * *
8126676 TACAAATTAAATCTCTAATAT
1 TACAAATCATATCTCTAAGAT
8126697 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
8126720 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
8126739 TGC-AATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
8126757 TGCATATCATATCT
1 TACAAATCATATCT
8126771 AAGATTGCAT
Statistics
Matches: 62, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
18 17 0.27
19 17 0.27
21 4 0.06
22 15 0.24
23 9 0.15
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.37
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:8126736 original size:19 final size:19
Alignment explanation
Indices: 8126712--8126785 Score: 141
Period size: 19 Copynumber: 3.9 Consensus size: 19
8126702 AATCATATCT
8126712 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
8126731 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
8126749 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
8126768 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
8126786 TGAAGATTAT
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
18 18 0.33
19 36 0.67
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:8126758 original size:37 final size:38
Alignment explanation
Indices: 8126705--8126785 Score: 141
Period size: 37 Copynumber: 2.2 Consensus size: 38
8126695 ATTACAAAAT
8126705 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
8126741 CA-ATCATATCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
8126778 CATATCAT
1 CATATCAT
8126786 TGAAGATTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
35 3 0.07
36 3 0.07
37 31 0.74
38 5 0.12
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37
Consensus pattern (38 bp):
CATATCATATCTAAGATTGCATATCATATCTAAGATTG
Found at i:8126805 original size:37 final size:37
Alignment explanation
Indices: 8126715--8126794 Score: 110
Period size: 37 Copynumber: 2.2 Consensus size: 37
8126705 CATATCTTCT
* *
8126715 AAGATTGCATATCATATCTAAGATTGCAATCATATCT
1 AAGATTACATATCATATCTAAGATTGCAATCATATCG
*
8126752 AAGATTGCATATCATATCTAAGATTGCATATCAT-T-G
1 AAGATTACATATCATATCTAAGATTGCA-ATCATATCG
8126788 AAGATTA
1 AAGATTA
8126795 TATTTCCATA
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
36 6 0.15
37 29 0.73
38 5 0.12
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (37 bp):
AAGATTACATATCATATCTAAGATTGCAATCATATCG
Found at i:8126942 original size:21 final size:20
Alignment explanation
Indices: 8126905--8126943 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
8126895 TGGACTTCGG
**
8126905 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGACTTATTAT
8126925 TTTTGTTTTTGGACTTATT
1 TTTT-TTTTTGGACTTATT
8126944 TCTGGGCCCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTGGACTTATTAT
Found at i:8128574 original size:12 final size:12
Alignment explanation
Indices: 8128557--8128584 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
8128547 ACAATAAGAA
8128557 GCTAAGGCTAGG
1 GCTAAGGCTAGG
8128569 GCTAAGGCTAGG
1 GCTAAGGCTAGG
8128581 GCTA
1 GCTA
8128585 GGGTTAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.25, C:0.18, G:0.39, T:0.18
Consensus pattern (12 bp):
GCTAAGGCTAGG
Found at i:8131483 original size:23 final size:24
Alignment explanation
Indices: 8131433--8131485 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
8131423 GAATAAAATA
* *
8131433 AAAATATAATAAATGTTATATAAT
1 AAAATATAATAAATGATATATAAG
* *
8131457 AAAATATAATATA-GATATATAGG
1 AAAATATAATAAATGATATATAAG
8131480 AAAATA
1 AAAATA
8131486 ATATATGATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
23 13 0.52
24 12 0.48
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (24 bp):
AAAATATAATAAATGATATATAAG
Found at i:8136430 original size:54 final size:54
Alignment explanation
Indices: 8136371--8136479 Score: 209
Period size: 54 Copynumber: 2.0 Consensus size: 54
8136361 TGAATGGAGA
*
8136371 GATGTAATATTAGTTAACTAGTTTATATTTCTATGTGATACACAAATCAGTTGT
1 GATGTAATATTAATTAACTAGTTTATATTTCTATGTGATACACAAATCAGTTGT
8136425 GATGTAATATTAATTAACTAGTTTATATTTCTATGTGATACACAAATCAGTTGT
1 GATGTAATATTAATTAACTAGTTTATATTTCTATGTGATACACAAATCAGTTGT
8136479 G
1 G
8136480 TATATTAAAT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.42
Consensus pattern (54 bp):
GATGTAATATTAATTAACTAGTTTATATTTCTATGTGATACACAAATCAGTTGT
Found at i:8136651 original size:16 final size:16
Alignment explanation
Indices: 8136632--8136662 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8136622 ATATTAATTT
*
8136632 TATTTAATATTAAAAA
1 TATTTAACATTAAAAA
8136648 TATTTAACATTAAAA
1 TATTTAACATTAAAA
8136663 TAATATAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATTTAACATTAAAAA
Found at i:8142224 original size:21 final size:23
Alignment explanation
Indices: 8142198--8142243 Score: 78
Period size: 21 Copynumber: 2.1 Consensus size: 23
8142188 TCTATTTAAT
8142198 TATTTTAA-TTATTTAA-TTATA
1 TATTTTAATTTATTTAATTTATA
8142219 TATTTTAATTTATTTAATTTATA
1 TATTTTAATTTATTTAATTTATA
8142242 TA
1 TA
8142244 AGTAATTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 8 0.35
22 8 0.35
23 7 0.30
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (23 bp):
TATTTTAATTTATTTAATTTATA
Found at i:8142252 original size:21 final size:21
Alignment explanation
Indices: 8142203--8142254 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
8142193 TTAATTATTT
**
8142203 TAATTATTTAATTATATATTT
1 TAATTATTTAATTATATATAG
8142224 TAATTTATTTAATT-TATATAAG
1 TAA-TTATTTAATTATATAT-AG
8142246 TAATTATTT
1 TAATTATTT
8142255 GATAAATTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 14 0.52
22 13 0.48
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (21 bp):
TAATTATTTAATTATATATAG
Found at i:8148635 original size:26 final size:25
Alignment explanation
Indices: 8148582--8148639 Score: 80
Period size: 26 Copynumber: 2.3 Consensus size: 25
8148572 GCGTTGAATG
* *
8148582 TAATTTTAAGTATTTAGTTTTTAAT
1 TAATTTTAAATAATTAGTTTTTAAT
*
8148607 TAATTTTAAAATAATTATTTTTTAAT
1 TAATTTT-AAATAATTAGTTTTTAAT
8148633 TAATTTT
1 TAATTTT
8148640 TTAAAATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 7 0.24
26 22 0.76
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.60
Consensus pattern (25 bp):
TAATTTTAAATAATTAGTTTTTAAT
Found at i:8148647 original size:14 final size:15
Alignment explanation
Indices: 8148602--8148647 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
8148592 TATTTAGTTT
8148602 TTAATTAATTTTAAAA
1 TTAATT-ATTTTAAAA
**
8148618 -TAATTATTTTTTAA
1 TTAATTATTTTAAAA
8148632 TTAATT-TTTTAAAA
1 TTAATTATTTTAAAA
8148646 TT
1 TT
8148648 TTAATTCATT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
14 15 0.60
15 10 0.40
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TTAATTATTTTAAAA
Found at i:8148742 original size:20 final size:20
Alignment explanation
Indices: 8148697--8148742 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
8148687 ATTAACTTAT
*
8148697 TTAACAATTCAAATATAATA
1 TTAAAAATTCAAATATAATA
** *
8148717 AAAAAAATTCAAATATCATA
1 TTAAAAATTCAAATATAATA
8148737 TTAAAA
1 TTAAAA
8148743 TATTGATATT
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (20 bp):
TTAAAAATTCAAATATAATA
Found at i:8150259 original size:19 final size:19
Alignment explanation
Indices: 8150219--8150258 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
8150209 TTTAAGTATT
*
8150219 AAATTAAATATTAAAATTA
1 AAATCAAATATTAAAATTA
8150238 AAATCAAATATT-AAATTA
1 AAATCAAATATTAAAATTA
8150256 AAA
1 AAA
8150259 AAAATTAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (19 bp):
AAATCAAATATTAAAATTA
Found at i:8155233 original size:18 final size:19
Alignment explanation
Indices: 8155196--8155234 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
8155186 ATTACAAAAT
*
8155196 AATTCAAAATAATTTTTAA
1 AATTCAAAATAATTTATAA
*
8155215 AATTTAAAAT-ATTTATAA
1 AATTCAAAATAATTTATAA
8155233 AA
1 AA
8155235 ATTCTAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (19 bp):
AATTCAAAATAATTTATAA
Found at i:8155248 original size:18 final size:18
Alignment explanation
Indices: 8155181--8155249 Score: 50
Period size: 19 Copynumber: 3.6 Consensus size: 18
8155171 TCTCTCCCAA
*
8155181 TAAAAATTACAAAATAATTC
1 TAAAAATTA-TAAA-AATTC
* * *
8155201 AAAATAATTTTTAAAATT-
1 TAAA-AATTATAAAAATTC
8155219 TAAAATATTTATAAAAATTC
1 TAAAA-A-TTATAAAAATTC
8155239 TAAAAATTATA
1 TAAAAATTATA
8155250 TTTTTTTAGA
Statistics
Matches: 38, Mismatches: 7, Indels: 10
0.69 0.13 0.18
Matches are distributed among these distances:
17 1 0.03
18 9 0.24
19 14 0.37
20 10 0.26
21 4 0.11
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (18 bp):
TAAAAATTATAAAAATTC
Found at i:8158075 original size:12 final size:13
Alignment explanation
Indices: 8158047--8158075 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8158037 GAATGAGAAT
8158047 ATTTATTTAATAA
1 ATTTATTTAATAA
8158060 ATTTATTTAA-AA
1 ATTTATTTAATAA
8158072 ATTT
1 ATTT
8158076 GACAAAACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
ATTTATTTAATAA
Found at i:8165462 original size:19 final size:19
Alignment explanation
Indices: 8165434--8165471 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
8165424 AACTAGAGAA
8165434 TGTTGACAAACCCTAATAC
1 TGTTGACAAACCCTAATAC
*
8165453 TGTTGCCAAACCCTAATAC
1 TGTTGACAAACCCTAATAC
8165472 CCTCTTCGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.29, G:0.11, T:0.26
Consensus pattern (19 bp):
TGTTGACAAACCCTAATAC
Found at i:8166921 original size:2 final size:2
Alignment explanation
Indices: 8166914--8166948 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
8166904 ATCGTAGAAA
*
8166914 AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8166949 AGACTCAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:8177881 original size:29 final size:30
Alignment explanation
Indices: 8177822--8177882 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 30
8177812 CTTAAGTGAA
* * * *
8177822 AACTTTTGAATAGTTTAATGACCATATTAT
1 AACTTTTGAATAGTTAAATAACCAAAATAT
*
8177852 AACTTTTTAA-AGTTAAATAACCAAAATAT
1 AACTTTTGAATAGTTAAATAACCAAAATAT
8177881 AA
1 AA
8177883 AATTTATTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 17 0.65
30 9 0.35
ACGTcount: A:0.46, C:0.10, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTTGAATAGTTAAATAACCAAAATAT
Found at i:8178194 original size:29 final size:30
Alignment explanation
Indices: 8178131--8178194 Score: 69
Period size: 31 Copynumber: 2.1 Consensus size: 30
8178121 TCAAATTTAT
* * *
8178131 ACATAAATTTTAGTTTAATGTGTAATTTAAT
1 ACATAAATTTTAATTT-AGGTGTAATTTAAC
8178162 ACATAAATTTTAATTT-GGTGTAA-TTATAC
1 ACATAAATTTTAATTTAGGTGTAATTTA-AC
8178191 ACAT
1 ACAT
8178195 GAAACTTGAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
28 3 0.10
29 11 0.38
31 15 0.52
ACGTcount: A:0.39, C:0.06, G:0.09, T:0.45
Consensus pattern (30 bp):
ACATAAATTTTAATTTAGGTGTAATTTAAC
Found at i:8187427 original size:3 final size:3
Alignment explanation
Indices: 8187419--8187450 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
8187409 TGTGCTCTAA
8187419 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
8187451 GAAGATACCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:8189453 original size:18 final size:17
Alignment explanation
Indices: 8189431--8189475 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 17
8189421 GTACATAGGG
*
8189431 TTTTTTTTTTACATTTCAC
1 TTTTTTTTTAAC-TTT-AC
8189450 TTTTTCTTTTAACTTTAC
1 TTTTT-TTTTAACTTTAC
8189468 TTTTTTTT
1 TTTTTTTT
8189476 AAAAGTGAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 3 0.12
18 7 0.29
19 8 0.33
20 6 0.25
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTTTTTTAACTTTAC
Found at i:8197915 original size:31 final size:31
Alignment explanation
Indices: 8197860--8197921 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
8197850 ATATTTTTAT
* *
8197860 TTGATCAATTTTAGTTCATATACTTTTCAAA
1 TTGATCAATTTTAATTCATATACTTTCCAAA
*
8197891 TTGATCAATTTTAATAT-ATGTACTTTCCAAA
1 TTGATCAATTTTAAT-TCATATACTTTCCAAA
8197922 CAAATTTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 26 0.96
32 1 0.04
ACGTcount: A:0.34, C:0.13, G:0.06, T:0.47
Consensus pattern (31 bp):
TTGATCAATTTTAATTCATATACTTTCCAAA
Found at i:8200912 original size:44 final size:44
Alignment explanation
Indices: 8200847--8200937 Score: 119
Period size: 44 Copynumber: 2.1 Consensus size: 44
8200837 TCAGTATAGT
*
8200847 TTCATCAAGATGTTGAGTAAAAGAATAAGATAAAAGATTCAAAC
1 TTCATCAAGATGTTGAGTAAAAGAACAAGATAAAAGATTCAAAC
* * * * * *
8200891 TTCATTAAGATGTTGATTAAAATAACCAGATACAAGATTCAAGC
1 TTCATCAAGATGTTGAGTAAAAGAACAAGATAAAAGATTCAAAC
8200935 TTC
1 TTC
8200938 TAGTTGCAGG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.29
Consensus pattern (44 bp):
TTCATCAAGATGTTGAGTAAAAGAACAAGATAAAAGATTCAAAC
Found at i:8201353 original size:102 final size:102
Alignment explanation
Indices: 8201177--8201378 Score: 377
Period size: 102 Copynumber: 2.0 Consensus size: 102
8201167 TTTCATGAAG
8201177 AATTTCCATATCAGATTCAACTTTCGGAGGTCCAGCAGCATCTTGAGGTGGTTCCCCATGCACAA
1 AATTTCCATATCAGATTCAACTTTCGGAGGTCCAGCAGCATCTTGAGGTGGTTCCCCATGCACAA
8201242 ATGCAGTATTTTCAGTAACTATTTCATTCTCATCAAC
66 ATGCAGTATTTTCAGTAACTATTTCATTCTCATCAAC
*
8201279 AATTTCCATATCAGATTCAACTTTCGGAGGTCCAGCAGCATCTTGAGGTGGTTTCCCATGCACAA
1 AATTTCCATATCAGATTCAACTTTCGGAGGTCCAGCAGCATCTTGAGGTGGTTCCCCATGCACAA
* *
8201344 ATGCAGTATTTTCAGTACCTATTTCATTCTTATCA
66 ATGCAGTATTTTCAGTAACTATTTCATTCTCATCA
8201379 TCTTCACCTG
Statistics
Matches: 97, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
102 97 1.00
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.34
Consensus pattern (102 bp):
AATTTCCATATCAGATTCAACTTTCGGAGGTCCAGCAGCATCTTGAGGTGGTTCCCCATGCACAA
ATGCAGTATTTTCAGTAACTATTTCATTCTCATCAAC
Found at i:8212682 original size:110 final size:110
Alignment explanation
Indices: 8212489--8212708 Score: 440
Period size: 110 Copynumber: 2.0 Consensus size: 110
8212479 TTTTAGTATA
8212489 TAGTAGAGCATAGGTTGTAACTTGATATATTGCCAATCATGCCAATGGCTTAGTGGCAAACTTGT
1 TAGTAGAGCATAGGTTGTAACTTGATATATTGCCAATCATGCCAATGGCTTAGTGGCAAACTTGT
8212554 GTGGGTTTCAAGTTGATTGGCATGAGTATAGGTTTTGATCATTGT
66 GTGGGTTTCAAGTTGATTGGCATGAGTATAGGTTTTGATCATTGT
8212599 TAGTAGAGCATAGGTTGTAACTTGATATATTGCCAATCATGCCAATGGCTTAGTGGCAAACTTGT
1 TAGTAGAGCATAGGTTGTAACTTGATATATTGCCAATCATGCCAATGGCTTAGTGGCAAACTTGT
8212664 GTGGGTTTCAAGTTGATTGGCATGAGTATAGGTTTTGATCATTGT
66 GTGGGTTTCAAGTTGATTGGCATGAGTATAGGTTTTGATCATTGT
8212709 GTTTGTAAAC
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
110 110 1.00
ACGTcount: A:0.25, C:0.12, G:0.26, T:0.36
Consensus pattern (110 bp):
TAGTAGAGCATAGGTTGTAACTTGATATATTGCCAATCATGCCAATGGCTTAGTGGCAAACTTGT
GTGGGTTTCAAGTTGATTGGCATGAGTATAGGTTTTGATCATTGT
Found at i:8222473 original size:20 final size:19
Alignment explanation
Indices: 8222418--8222483 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 19
8222408 CATATTAAAA
*
8222418 ATATTATTCTATAATTTTAAT
1 ATATTATT-TACAA-TTTAAT
* ** *
8222439 ATTTTATAAAGAATTCTAAT
1 ATATTATTTACAATT-TAAT
8222459 ATATTATTTACAATTTAAT
1 ATATTATTTACAATTTAAT
8222478 ATATTA
1 ATATTA
8222484 AAATGTGTAA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
19 12 0.33
20 18 0.50
21 6 0.17
ACGTcount: A:0.42, C:0.05, G:0.02, T:0.52
Consensus pattern (19 bp):
ATATTATTTACAATTTAAT
Found at i:8223619 original size:76 final size:77
Alignment explanation
Indices: 8223532--8223679 Score: 226
Period size: 79 Copynumber: 1.9 Consensus size: 77
8223522 AAAGAATTGA
* *
8223532 TCGAGAAATCAACAAAAAAATAGAAAC-TATCAGAATACCAATTGACAACACAATCTCAGAACAA
1 TCGAAAAATCAACAAAAAAATAGAAACATATCAGAATACCAATCGACAACACAATCTCAGAACAA
8223596 AAAAATAGAAAC
66 AAAAATAGAAAC
* * *
8223608 TCGAAAAATCAACAAAAAAATAGAAACTAATATTAGAATACCAATCGGCTACACAATCTCAGAAC
1 TCGAAAAATCAACAAAAAAATAGAAAC--ATATCAGAATACCAATCGACAACACAATCTCAGAAC
8223673 AAAAAAA
64 AAAAAAA
8223680 AAAGAATCTT
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
76 26 0.41
79 38 0.59
ACGTcount: A:0.57, C:0.18, G:0.09, T:0.16
Consensus pattern (77 bp):
TCGAAAAATCAACAAAAAAATAGAAACATATCAGAATACCAATCGACAACACAATCTCAGAACAA
AAAAATAGAAAC
Found at i:8224267 original size:14 final size:15
Alignment explanation
Indices: 8224244--8224274 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
8224234 AGAATGAGGG
8224244 AAAATAAAAAACAAA
1 AAAATAAAAAACAAA
8224259 AAAAT-AAAAACAAA
1 AAAATAAAAAACAAA
8224273 AA
1 AA
8224275 GAAGGCCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.69
15 5 0.31
ACGTcount: A:0.87, C:0.06, G:0.00, T:0.06
Consensus pattern (15 bp):
AAAATAAAAAACAAA
Found at i:8227893 original size:17 final size:17
Alignment explanation
Indices: 8227871--8227904 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8227861 TTTCTTTTGA
*
8227871 ATTTTTATGAACTTTTT
1 ATTTTTATGAAATTTTT
*
8227888 ATTTTTTTGAAATTTTT
1 ATTTTTATGAAATTTTT
8227905 TTATAATTCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.03, G:0.06, T:0.68
Consensus pattern (17 bp):
ATTTTTATGAAATTTTT
Found at i:8240499 original size:23 final size:23
Alignment explanation
Indices: 8240473--8240570 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
8240463 ATAAGTGCCA
8240473 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
8240496 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
8240519 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
8240541 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
8240564 CACTGAT
1 CACTGAT
8240571 CAATAACACT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:8240538 original size:45 final size:45
Alignment explanation
Indices: 8240480--8240568 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
8240470 CCACACTGAT
* *
8240480 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTACCACTGG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
8240525 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
8240569 ATCAATAACA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.19
Consensus pattern (45 bp):
ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:8240670 original size:8 final size:8
Alignment explanation
Indices: 8240657--8240685 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
8240647 ACCCGGGACT
8240657 CACTGTAA
1 CACTGTAA
8240665 CACTGTAA
1 CACTGTAA
8240673 CACTGTAA
1 CACTGTAA
8240681 CACTG
1 CACTG
8240686 GTCTCTAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (8 bp):
CACTGTAA
Found at i:8247873 original size:23 final size:23
Alignment explanation
Indices: 8247847--8247944 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
8247837 ATAAGTGCCA
8247847 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
8247870 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
8247893 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
8247915 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
8247938 CACTGAT
1 CACTGAT
8247945 CAATAACACT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:8247912 original size:45 final size:45
Alignment explanation
Indices: 8247854--8247942 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
8247844 CCACACTGAT
* *
8247854 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTACCACTGG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
8247899 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
8247943 ATCAATAACA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.19
Consensus pattern (45 bp):
ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:8248044 original size:8 final size:8
Alignment explanation
Indices: 8248031--8248059 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
8248021 ACCCGGGACT
8248031 CACTGTAA
1 CACTGTAA
8248039 CACTGTAA
1 CACTGTAA
8248047 CACTGTAA
1 CACTGTAA
8248055 CACTG
1 CACTG
8248060 GTCTCTAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (8 bp):
CACTGTAA
Found at i:8250604 original size:7 final size:7
Alignment explanation
Indices: 8250592--8250625 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
8250582 ATACAAATTC
8250592 AAAAATA
1 AAAAATA
8250599 AAAAATA
1 AAAAATA
8250606 AAAAATA
1 AAAAATA
*
8250613 AACAATA
1 AAAAATA
8250620 AAAAAT
1 AAAAAT
8250626 CATAAAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (7 bp):
AAAAATA
Found at i:8256879 original size:17 final size:18
Alignment explanation
Indices: 8256859--8256892 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8256849 AAGTTGATTA
8256859 AAATTGC-AAAATTAAAT
1 AAATTGCGAAAATTAAAT
8256876 AAATTGCGAAAATTAAA
1 AAATTGCGAAAATTAAA
8256893 ATAGAGAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.59, C:0.06, G:0.09, T:0.26
Consensus pattern (18 bp):
AAATTGCGAAAATTAAAT
Found at i:8259596 original size:14 final size:14
Alignment explanation
Indices: 8259577--8259608 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
8259567 ATAGAGGCAT
8259577 ATAGAAGTTGCTGA
1 ATAGAAGTTGCTGA
*
8259591 ATAGAAGTTGTTGA
1 ATAGAAGTTGCTGA
8259605 ATAG
1 ATAG
8259609 TCCTTGAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.28, T:0.31
Consensus pattern (14 bp):
ATAGAAGTTGCTGA
Found at i:8267504 original size:46 final size:48
Alignment explanation
Indices: 8267432--8267536 Score: 142
Period size: 46 Copynumber: 2.2 Consensus size: 48
8267422 GACAGAACAG
* * *
8267432 GACAGAAATGAGCCATGTAAGTCCATATCAG-T-TATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCAGATATATATGGCATTGGA
*
8267478 GACAGGAATGAGCCATGTAAGCCCATATTAGATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCAG--ATATATATGGCATTGGA
8267528 GACAGGAAT
1 GACAGGAAT
8267537 AATTCATGTA
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
46 28 0.55
49 1 0.02
50 22 0.43
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCATATCAGATATATATGGCATTGGA
Found at i:8272050 original size:39 final size:38
Alignment explanation
Indices: 8271975--8272065 Score: 101
Period size: 39 Copynumber: 2.4 Consensus size: 38
8271965 CCATCTCCGA
* * *
8271975 CCAACCCAACACACCATGTAGGGATAAAATCGACCCAC
1 CCAACCCTACACACCAAGTAGGGATAAAATCAACCCAC
* * * *
8272013 CCAACCCTACACACCAAGATGGGGATACAGTCAACCCAT
1 CCAACCCTACACACCAAG-TAGGGATAAAATCAACCCAC
*
8272052 CCAGCCCTACACAC
1 CCAACCCTACACAC
8272066 TAAAGGTACC
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
38 16 0.36
39 28 0.64
ACGTcount: A:0.36, C:0.40, G:0.13, T:0.11
Consensus pattern (38 bp):
CCAACCCTACACACCAAGTAGGGATAAAATCAACCCAC
Found at i:8281056 original size:17 final size:17
Alignment explanation
Indices: 8281034--8281077 Score: 88
Period size: 17 Copynumber: 2.6 Consensus size: 17
8281024 CACCCGTATC
8281034 GGCCCACACGCTCGTGT
1 GGCCCACACGCTCGTGT
8281051 GGCCCACACGCTCGTGT
1 GGCCCACACGCTCGTGT
8281068 GGCCCACACG
1 GGCCCACACG
8281078 GCCCATTTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.14, C:0.43, G:0.30, T:0.14
Consensus pattern (17 bp):
GGCCCACACGCTCGTGT
Found at i:8292242 original size:46 final size:48
Alignment explanation
Indices: 8292191--8292324 Score: 145
Period size: 47 Copynumber: 2.9 Consensus size: 48
8292181 ATGGTTGAGC
*
8292191 ATCCGAACTCGTTGAATTGACTCCGAGTTCACTTATGGATGTGAA-T-G
1 ATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGT-AACTAG
* * * *
8292238 -TCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATGTAACTAGG
1 ATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGTAACTA-G
*
8292283 CATCCGAACTCGTTGACTTGAGTCCGAGTTCACTTATGGATG
1 -ATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATG
8292325 CAAACGCCCG
Statistics
Matches: 70, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.03
43 6 0.09
45 3 0.04
46 26 0.37
47 27 0.39
48 2 0.03
50 4 0.06
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.31
Consensus pattern (48 bp):
ATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGTAACTAG
Found at i:8292350 original size:46 final size:46
Alignment explanation
Indices: 8292193--8292364 Score: 161
Period size: 46 Copynumber: 3.7 Consensus size: 46
8292183 GGTTGAGCAT
* * * * *
8292193 CCGAACTCGTTGAATTGACTCCGAGTTCACTTATGGATGTGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACGC
* * * *
8292239 CCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--ACGC
* *
8292284 ATCCGAACTCGTTGACTTGAGTCCGAGTTCACTTATGGATGCAAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACGC
* * *
8292332 CCGAGCTCGTTGAGTTGAGTCTGATTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
8292365 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 54 0.53
47 26 0.26
48 5 0.05
50 6 0.06
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.31
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACGC
Found at i:8300798 original size:93 final size:93
Alignment explanation
Indices: 8300629--8300799 Score: 220
Period size: 93 Copynumber: 1.8 Consensus size: 93
8300619 GGATGGTTGA
* ** *
8300629 GCATCCGAACTCGTTGATTTGACTCCGAGTTCACTTATGGATGTGAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCATTGAGT
*
8300694 TGAGTTCGAGTTCGTGAGATGTAACTAG
66 TGAATTCGAGTTCGTGAGATGTAACTAG
* * * * *
8300722 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCAAACG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCAAACGTC-CGAACTCATTGAG
8300786 TTGAA-TCTGAGTTC
65 TTGAATTC-GAGTTC
8300800 ACTTAGGGGC
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
92 3 0.05
93 63 0.95
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCATTGAGT
TGAATTCGAGTTCGTGAGATGTAACTAG
Found at i:8310033 original size:119 final size:121
Alignment explanation
Indices: 8309816--8310036 Score: 304
Period size: 119 Copynumber: 1.8 Consensus size: 121
8309806 TTCATTTTTC
* * * *
8309816 TATCATTTAATTTACATTCTTAGGTTAGTTATCATACATTTTGTGTTAAATCAAGTTATTAGGAA
1 TATCATTTAATTTACATTCCTAAGTTAGATATCATACATTCTGTGTTAAATCAAG-TATTAGGAA
* *
8309881 CACCTCATACCCATGACATTGCTATGTTTATTCTCATGCTATTACCATGCCAATGTA
65 AACCTCATACCCATGACATTGCTATGTTCATTCTCATGCTATTACCATGCCAATGTA
* **
8309938 TATCATTTAATTTGCATTCCTAAGTTA-ATATCATACATTCTGTGTTAAATTGAG-ATTAGGAAA
1 TATCATTTAATTTACATTCCTAAGTTAGATATCATACATTCTGTGTTAAATCAAGTATTAGGAAA
* *
8310001 ACCTCATACCCATTACATTTCTAT-TCTCATTCTCAT
66 ACCTCATACCCATGACATTGCTATGT-TCATTCTCAT
8310037 TGTTATTGTT
Statistics
Matches: 87, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
118 1 0.01
119 39 0.45
121 23 0.26
122 24 0.28
ACGTcount: A:0.30, C:0.19, G:0.10, T:0.41
Consensus pattern (121 bp):
TATCATTTAATTTACATTCCTAAGTTAGATATCATACATTCTGTGTTAAATCAAGTATTAGGAAA
ACCTCATACCCATGACATTGCTATGTTCATTCTCATGCTATTACCATGCCAATGTA
Found at i:8312812 original size:18 final size:18
Alignment explanation
Indices: 8312791--8312834 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
8312781 GAAGCCGATT
8312791 GATCCATCTCAGAAGCCA
1 GATCCATCTCAGAAGCCA
8312809 GATCCATCTCAGAAGCCA
1 GATCCATCTCAGAAGCCA
*
8312827 GATTCATC
1 GATCCATC
8312835 ATCAAGACTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.32, C:0.32, G:0.16, T:0.20
Consensus pattern (18 bp):
GATCCATCTCAGAAGCCA
Found at i:8327919 original size:3 final size:3
Alignment explanation
Indices: 8327911--8327936 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
8327901 AGAAGAGAAG
8327911 TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TT
8327937 TTTTGTAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:8329267 original size:43 final size:43
Alignment explanation
Indices: 8329207--8329297 Score: 123
Period size: 43 Copynumber: 2.1 Consensus size: 43
8329197 CTTTGAGTTC
* *
8329207 ATTA-CAAGATTTCCTTGATTAAGTAAATG-TATTATATCTTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCT-TTATATCTTTT
* *
8329249 ATTACCAAGATTTACTTGATTAAGAAAATGCTTTGTATGTTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCTTTATATCTTTT
8329292 ATTACC
1 ATTACC
8329298 TTGCAATGTG
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
42 4 0.09
43 38 0.88
44 1 0.02
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.45
Consensus pattern (43 bp):
ATTACCAAGATTTACTTGATTAAGAAAATGCTTTATATCTTTT
Found at i:8335311 original size:16 final size:16
Alignment explanation
Indices: 8335292--8335330 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
8335282 GTTTGGTTTA
* *
8335292 CTGTAATGGAATAGGG
1 CTGTAATGAAATAGAG
*
8335308 CTGTAATTAAATAGAG
1 CTGTAATGAAATAGAG
8335324 CTGTAAT
1 CTGTAAT
8335331 AAGTAATTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.31
Consensus pattern (16 bp):
CTGTAATGAAATAGAG
Found at i:8340889 original size:19 final size:18
Alignment explanation
Indices: 8340865--8340901 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
8340855 CCCAAAATCT
8340865 TGAATATGATTAAATAAAA
1 TGAATAT-ATTAAATAAAA
*
8340884 TGAATATTTTAAATAAAA
1 TGAATATATTAAATAAAA
8340902 ACAAAAATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.57, C:0.00, G:0.08, T:0.35
Consensus pattern (18 bp):
TGAATATATTAAATAAAA
Found at i:8346328 original size:20 final size:19
Alignment explanation
Indices: 8346289--8346328 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
8346279 AAATAGTGAG
*
8346289 AATTTATTTTCTAAGTATA
1 AATTTATTTTCTAAGAATA
*
8346308 AATTCTATTTTCTAGGAATA
1 AATT-TATTTTCTAAGAATA
8346328 A
1 A
8346329 CAATTCTACC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.47
Consensus pattern (19 bp):
AATTTATTTTCTAAGAATA
Found at i:8346939 original size:24 final size:24
Alignment explanation
Indices: 8346907--8346956 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
8346897 TTGATGGAAG
8346907 CTGTAGGTCTTTTTTAGAGACCTT
1 CTGTAGGTCTTTTTTAGAGACCTT
8346931 CTGTAGGTCTTTTTTAGAGACCTT
1 CTGTAGGTCTTTTTTAGAGACCTT
8346955 CT
1 CT
8346957 CCCACACAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.16, C:0.18, G:0.20, T:0.46
Consensus pattern (24 bp):
CTGTAGGTCTTTTTTAGAGACCTT
Found at i:8348294 original size:18 final size:17
Alignment explanation
Indices: 8348252--8348294 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
8348242 TTTTTAAGTT
*
8348252 TATAATATTTTATATTA
1 TATAATTTTTTATATTA
8348269 TACT-ATTTTTATATATTA
1 TA-TAATTTTT-TATATTA
8348287 TATAATTT
1 TATAATTT
8348295 AGAACCCATT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.60
Consensus pattern (17 bp):
TATAATTTTTTATATTA
Found at i:8348410 original size:23 final size:23
Alignment explanation
Indices: 8348377--8348423 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
8348367 AGATGATTAT
8348377 ATAAAAAAATA-AAAAATTATAAA
1 ATAAAAAAATATAAAAATT-TAAA
* *
8348400 ATAAAATAATATAAATATTTAAA
1 ATAAAAAAATATAAAAATTTAAA
8348423 A
1 A
8348424 AAATTAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (23 bp):
ATAAAAAAATATAAAAATTTAAA
Found at i:8348412 original size:33 final size:33
Alignment explanation
Indices: 8348375--8348441 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 33
8348365 TAAGATGATT
8348375 ATATAAAAAAAT-AAAAAATTATAAAATAAAATA
1 ATATAAAAAAATAAAAAAATTA-AAAATAAAATA
* ** *
8348408 ATATAAATATTTAAAAAAATTAAAAATAATATA
1 ATATAAAAAAATAAAAAAATTAAAAATAAAATA
8348441 A
1 A
8348442 ACGAACCTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 20 0.69
34 9 0.31
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (33 bp):
ATATAAAAAAATAAAAAAATTAAAAATAAAATA
Found at i:8352341 original size:19 final size:19
Alignment explanation
Indices: 8352279--8352342 Score: 69
Period size: 19 Copynumber: 3.3 Consensus size: 19
8352269 TAAAATATAA
* *
8352279 ATTTTGGAAATTTTATAAGT
1 ATTTT-GAAATTTTAAAAAT
8352299 ATTTTGAAA-TTTAAAAATT
1 ATTTTGAAATTTTAAAAA-T
8352318 ATTTTGAAAATTTTAAAAAT
1 ATTTTG-AAATTTTAAAAAT
8352338 -TTTTG
1 ATTTTG
8352343 TCGAGAGAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
18 6 0.15
19 16 0.41
20 9 0.23
21 8 0.21
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (19 bp):
ATTTTGAAATTTTAAAAAT
Found at i:8354055 original size:23 final size:23
Alignment explanation
Indices: 8354029--8354126 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
8354019 ATAAGTGCCA
8354029 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
8354052 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
8354075 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
8354097 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
8354120 CACTGAT
1 CACTGAT
8354127 CAATAACACT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:8354094 original size:45 final size:45
Alignment explanation
Indices: 8354036--8354124 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
8354026 CCACACTGAT
* *
8354036 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTACCACTGG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
8354081 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
8354125 ATCAATAACA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.19
Consensus pattern (45 bp):
ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:8355971 original size:3 final size:3
Alignment explanation
Indices: 8355963--8355988 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
8355953 ACATGTTGGG
8355963 ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
8355989 TAAAGCTACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:8364847 original size:38 final size:38
Alignment explanation
Indices: 8364796--8364874 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
8364786 ATCTAGCGAA
8364796 ATCAGAATCAGAATACCCTATGACCTCTAAAAGATTTG
1 ATCAGAATCAGAATACCCTATGACCTCTAAAAGATTTG
*
8364834 ATCAGAATCAGAATACCCTATGACCTTTAAAAGATTTG
1 ATCAGAATCAGAATACCCTATGACCTCTAAAAGATTTG
8364872 ATC
1 ATC
8364875 TCTTATAAGT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (38 bp):
ATCAGAATCAGAATACCCTATGACCTCTAAAAGATTTG
Found at i:8372272 original size:18 final size:18
Alignment explanation
Indices: 8372249--8372289 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
8372239 TAATCCTAAT
8372249 TAATAAATAAAAT-TGAAA
1 TAATAAA-AAAATATGAAA
8372267 TAATAAAAAAATATGAAA
1 TAATAAAAAAATATGAAA
*
8372285 CAATA
1 TAATA
8372290 GCAGCTCATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.24
Consensus pattern (18 bp):
TAATAAAAAAATATGAAA
Found at i:8375830 original size:17 final size:16
Alignment explanation
Indices: 8375793--8375831 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
8375783 GATGGAAAGC
*
8375793 AGAAAATAAAGACAGA
1 AGAAAATAAAGACAAA
*
8375809 AGAAAATAAAGAGGAAA
1 AGAAAATAAAGA-CAAA
8375826 AGAAAA
1 AGAAAA
8375832 ATATGCATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.72, C:0.03, G:0.21, T:0.05
Consensus pattern (16 bp):
AGAAAATAAAGACAAA
Found at i:8376139 original size:22 final size:19
Alignment explanation
Indices: 8376114--8376157 Score: 61
Period size: 22 Copynumber: 2.2 Consensus size: 19
8376104 TAAATAGAAT
8376114 TATCTCGAGACTATTTAAACAA
1 TATCTCGAGAC-A-TTAAA-AA
8376136 TATCTCGAGACATTAAAAA
1 TATCTCGAGACATTAAAAA
8376155 TAT
1 TAT
8376158 AACTAGACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 5 0.23
20 5 0.23
21 1 0.05
22 11 0.50
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (19 bp):
TATCTCGAGACATTAAAAA
Found at i:8377433 original size:15 final size:15
Alignment explanation
Indices: 8377415--8377446 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
8377405 TATATAAAAC
8377415 AAATTTAAAAAATAT
1 AAATTTAAAAAATAT
8377430 AAATTTAAAAAATAT
1 AAATTTAAAAAATAT
8377445 AA
1 AA
8377447 TACATCAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATTTAAAAAATAT
Found at i:8377682 original size:21 final size:22
Alignment explanation
Indices: 8377643--8377690 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
8377633 AATATAATAG
*
8377643 CAAAATGACAACAAAACAACAT
1 CAAAATGACAACAAAACAACAA
*
8377665 CAAAATGGCAAC-AAACAACAA
1 CAAAATGACAACAAAACAACAA
8377686 CAAAA
1 CAAAA
8377691 CAACAGTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 13 0.54
22 11 0.46
ACGTcount: A:0.65, C:0.23, G:0.06, T:0.06
Consensus pattern (22 bp):
CAAAATGACAACAAAACAACAA
Found at i:8378665 original size:80 final size:80
Alignment explanation
Indices: 8378548--8378696 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 80
8378538 CGTTTGGATA
* * **
8378548 AAAAACGCTGCAATAGATCGAGCATTAGCGCTGCTTTTTGAAAAA-CGTTGCTATAGGTCGACCA
1 AAAAACGCCGCAATAGATCGAGCATTAGAGCTGCTTTTT-AAAAAGCGCCGCTATAGGTCGACCA
8378612 TTAGCGGTGCTTTTTG
65 TTAGCGGTGCTTTTTG
* * *
8378628 AAAAACGCCGCTATAGATTGAGCATTAGTAGC-GCTTTTTAAAAAGCGCCGCTATAGGTCGACCT
1 AAAAACGCCGCAATAGATCGAGCATTAG-AGCTGCTTTTTAAAAAGCGCCGCTATAGGTCGACCA
8378692 TTAGC
65 TTAGC
8378697 AGCGCTGTAA
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 5 0.08
80 53 0.88
81 2 0.03
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (80 bp):
AAAAACGCCGCAATAGATCGAGCATTAGAGCTGCTTTTTAAAAAGCGCCGCTATAGGTCGACCAT
TAGCGGTGCTTTTTG
Found at i:8378701 original size:40 final size:40
Alignment explanation
Indices: 8378548--8378702 Score: 161
Period size: 40 Copynumber: 3.9 Consensus size: 40
8378538 CGTTTGGATA
* * * *
8378548 AAAAACGCTGCAATAGATCGAGCATTAGC-GCTGCTTTTTG
1 AAAAACGCCGCTATAGGTCGACCATTAGCAGC-GCTTTTTG
** * *
8378588 AAAAACGTTGCTATAGGTCGACCATTAGCGGTGCTTTTTG
1 AAAAACGCCGCTATAGGTCGACCATTAGCAGCGCTTTTTG
* * * *
8378628 AAAAACGCCGCTATAGATTGAGCATTAGTAGCGCTTTTT-
1 AAAAACGCCGCTATAGGTCGACCATTAGCAGCGCTTTTTG
*
8378667 AAAAAGCGCCGCTATAGGTCGACCTTTAGCAGCGCT
1 AAAAA-CGCCGCTATAGGTCGACCATTAGCAGCGCT
8378703 GTAATAACCC
Statistics
Matches: 95, Mismatches: 18, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
39 5 0.05
40 89 0.94
41 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (40 bp):
AAAAACGCCGCTATAGGTCGACCATTAGCAGCGCTTTTTG
Found at i:8382123 original size:14 final size:14
Alignment explanation
Indices: 8382106--8382272 Score: 108
Period size: 14 Copynumber: 11.7 Consensus size: 14
8382096 TCATTATAGC
8382106 TTAGGGTTTATGGT
1 TTAGGGTTTATGGT
* *
8382120 TTAGGGTATATGAT
1 TTAGGGTTTATGGT
*
8382134 TTAGGGTTTAAGGT
1 TTAGGGTTTATGGT
8382148 TTAGGAGTTACTAT--T
1 TTAGG-GTT--TATGGT
* * *
8382163 TTAAGGCTTATGGA
1 TTAGGGTTTATGGT
* *
8382177 TTATGGGTTTAGGGA
1 TTA-GGGTTTATGGT
*
8382192 TTATGGTTTATGGT
1 TTAGGGTTTATGGT
*
8382206 TTAAGGG-TTAGGGT
1 TT-AGGGTTTATGGT
* *
8382220 TTAAGGTTTATGGG
1 TTAGGGTTTATGGT
*
8382234 TTAGGGGTTTAGGGT
1 TTA-GGGTTTATGGT
* *
8382249 TTAAGGG-ATAAGGT
1 TT-AGGGTTTATGGT
8382263 TTAGGGTTTA
1 TTAGGGTTTA
8382273 AAGTTTAGAT
Statistics
Matches: 116, Mismatches: 26, Indels: 22
0.71 0.16 0.13
Matches are distributed among these distances:
12 3 0.03
13 7 0.06
14 68 0.59
15 35 0.30
16 1 0.01
17 2 0.02
ACGTcount: A:0.22, C:0.01, G:0.34, T:0.43
Consensus pattern (14 bp):
TTAGGGTTTATGGT
Found at i:8382208 original size:21 final size:20
Alignment explanation
Indices: 8382106--8382272 Score: 95
Period size: 21 Copynumber: 7.8 Consensus size: 20
8382096 TCATTATAGC
8382106 TTAGGGTTTATGGTTTAGGG
1 TTAGGGTTTATGGTTTAGGG
* * * *
8382126 TATATGATTTAGGGTTTAAGGT
1 T-TAGGGTTTATGGTTT-AGGG
*
8382148 TTAGGAGTTACTAT--TTTAAGGC
1 TTAGG-GTT--TATGGTTT-AGGG
* *
8382170 TTATGGATTATGGGTTTAGGG
1 TTAGGGTTTAT-GGTTTAGGG
*
8382191 ATTATGGTTTATGGTTTAAGGG
1 -TTAGGGTTTATGGTTT-AGGG
*
8382213 TTAGGGTTTAAGGTTTATGGG
1 TTAGGGTTTATGGTTTA-GGG
*
8382234 TTAGGGGTTTAGGGTTTAAGGG
1 TTA-GGGTTTATGGTTT-AGGG
* * *
8382256 ATAAGGTTTAGGGTTTA
1 TTAGGGTTTATGGTTTA
8382273 AAGTTTAGAT
Statistics
Matches: 117, Mismatches: 17, Indels: 26
0.73 0.11 0.16
Matches are distributed among these distances:
19 3 0.03
20 3 0.03
21 57 0.49
22 51 0.44
23 1 0.01
24 2 0.02
ACGTcount: A:0.22, C:0.01, G:0.34, T:0.43
Consensus pattern (20 bp):
TTAGGGTTTATGGTTTAGGG
Found at i:8382270 original size:7 final size:7
Alignment explanation
Indices: 8382106--8382272 Score: 83
Period size: 7 Copynumber: 23.4 Consensus size: 7
8382096 TCATTATAGC
8382106 TTAGGGT
1 TTAGGGT
*
8382113 TTATGGT
1 TTAGGGT
8382120 TTAGGGT
1 TTAGGGT
* * *
8382127 ATATGAT
1 TTAGGGT
8382134 TTAGGGT
1 TTAGGGT
*
8382141 TTAAGGT
1 TTAGGGT
8382148 TTAGGAGT
1 TTAGG-GT
*
8382156 TACTA--TT
1 T--TAGGGT
* *
8382163 TTAAGGC
1 TTAGGGT
* *
8382170 TTATGGA
1 TTAGGGT
8382177 TTATGGGT
1 TTA-GGGT
*
8382185 TTAGGGA
1 TTAGGGT
*
8382192 TTATGGT
1 TTAGGGT
*
8382199 TTATGGT
1 TTAGGGT
8382206 TTAAGGG-
1 TT-AGGGT
8382213 TTAGGGT
1 TTAGGGT
*
8382220 TTAAGGT
1 TTAGGGT
8382227 TTATGGG-
1 TTA-GGGT
8382234 TTAGGGGT
1 TTA-GGGT
8382242 TTAGGGT
1 TTAGGGT
8382249 TTAAGGG-
1 TT-AGGGT
* *
8382256 ATAAGGT
1 TTAGGGT
8382263 TTAGGGT
1 TTAGGGT
8382270 TTA
1 TTA
8382273 AAGTTTAGAT
Statistics
Matches: 120, Mismatches: 28, Indels: 24
0.70 0.16 0.14
Matches are distributed among these distances:
5 2 0.02
6 7 0.06
7 89 0.74
8 20 0.17
10 2 0.02
ACGTcount: A:0.22, C:0.01, G:0.34, T:0.43
Consensus pattern (7 bp):
TTAGGGT
Found at i:8382273 original size:21 final size:21
Alignment explanation
Indices: 8382181--8382273 Score: 98
Period size: 21 Copynumber: 4.4 Consensus size: 21
8382171 TATGGATTAT
*
8382181 GGGTTT-AGGGATTATGGTTTA
1 GGGTTTAAGGGA-TAGGGTTTA
* *
8382202 TGGTTTAAGGGTTAGGGTTTA
1 GGGTTTAAGGGATAGGGTTTA
* * *
8382223 AGGTTTATGGGTTAGGGGTTTA
1 GGGTTTAAGGGATA-GGGTTTA
*
8382245 GGGTTTAAGGGATAAGGTTTA
1 GGGTTTAAGGGATAGGGTTTA
8382266 GGGTTTAA
1 GGGTTTAA
8382274 AGTTTAGATT
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
21 39 0.64
22 22 0.36
ACGTcount: A:0.22, C:0.00, G:0.39, T:0.40
Consensus pattern (21 bp):
GGGTTTAAGGGATAGGGTTTA
Found at i:8382572 original size:20 final size:20
Alignment explanation
Indices: 8382524--8382574 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
8382514 ATAGGGGCAT
* * *
8382524 ATGCCCGTATGGCTTGGGAC
1 ATGCCCGTGTGGCCTGGAAC
*
8382544 ACGCCCGTGTGGCCTGGAAC
1 ATGCCCGTGTGGCCTGGAAC
8382564 ATGCCCGTGTG
1 ATGCCCGTGTG
8382575 CTGCAGTCGT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.14, C:0.29, G:0.35, T:0.22
Consensus pattern (20 bp):
ATGCCCGTGTGGCCTGGAAC
Found at i:8383490 original size:52 final size:52
Alignment explanation
Indices: 8383361--8383528 Score: 153
Period size: 52 Copynumber: 3.1 Consensus size: 52
8383351 TGTTACACGG
* ** *
8383361 ATCACATATCATACCGATGCCATATCCCAAATATGGTCTTATAC-GGAATCA-CATT
1 ATCACAT-T-ATACCGATGCCATA-GCCAGCTATGGTCTTATACGGGAGT-ATCA-T
*
8383416 ATCACATTACACCGATGCCATAGCCTAGCTATGGTCTTATACGGGAGTATCA-
1 ATCACATTATACCGATGCCATAGCC-AGCTATGGTCTTATACGGGAGTATCAT
* * * * *
8383468 ATCACATTGTACCGATGCCATAGCCCGACTATGGTCTTATATGGAAGTATATAT
1 ATCACATTATACCGATGCCATAGCCAG-CTATGGTCTTATACGGGAGTAT-CAT
8383522 ATCACAT
1 ATCACAT
8383529 CTTTTCCGTC
Statistics
Matches: 96, Mismatches: 11, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
51 1 0.01
52 45 0.47
53 29 0.30
54 14 0.15
55 7 0.07
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (52 bp):
ATCACATTATACCGATGCCATAGCCAGCTATGGTCTTATACGGGAGTATCAT
Found at i:8385354 original size:131 final size:131
Alignment explanation
Indices: 8385097--8385342 Score: 413
Period size: 131 Copynumber: 1.9 Consensus size: 131
8385087 AATTTAGAGA
* *
8385097 ACATGAGTGAAATTCTAAAGGAATATTTGATTATTTTGAACAAACAGGAAATCGCAACCCAGCAC
1 ACATGAGTGAAATTCCAAAGGAATATTTGATTATTTTGAACAAACAGGAAATCGCAACCAAGCAC
* *
8385162 GATAGGGCACGATTCCCTGAATTGCCAAACATCGAGTATTACCTTCGTTTTGAAGAGTTTTTAAA
66 AATAGAGCACGATTCCCTGAATTGCCAAACATCGAGTATTACCTTCGTTTTGAAGAGTTTTTAAA
8385227 G
131 G
* * *
8385228 ACATGAGTGAAATTCCAAAGGAATATTTTATTGTTTTGAACAAACGGGAAATCGCAACCAAGCAC
1 ACATGAGTGAAATTCCAAAGGAATATTTGATTATTTTGAACAAACAGGAAATCGCAACCAAGCAC
*
8385293 AATAGAGCACGATTCCC-GAATTGCCAAACATCGAGTATTGCCTTCGTTTT
66 AATAGAGCACGATTCCCTGAATTGCCAAACATCGAGTATTACCTTCGTTTT
8385343 AGTAAATTTT
Statistics
Matches: 107, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
130 32 0.30
131 75 0.70
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (131 bp):
ACATGAGTGAAATTCCAAAGGAATATTTGATTATTTTGAACAAACAGGAAATCGCAACCAAGCAC
AATAGAGCACGATTCCCTGAATTGCCAAACATCGAGTATTACCTTCGTTTTGAAGAGTTTTTAAA
G
Found at i:8385605 original size:28 final size:27
Alignment explanation
Indices: 8385570--8385625 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 27
8385560 ACGATCATGC
* *
8385570 ATGAG-AAATAATTGATATAATAATACA
1 ATGAGAAAATAA-TAATATAACAATACA
8385597 ATGACGAAAATAATAATATAACAATACA
1 ATGA-GAAAATAATAATATAACAATACA
8385625 A
1 A
8385626 CACCACCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 4 0.16
28 15 0.60
29 6 0.24
ACGTcount: A:0.59, C:0.07, G:0.09, T:0.25
Consensus pattern (27 bp):
ATGAGAAAATAATAATATAACAATACA
Found at i:8395497 original size:23 final size:23
Alignment explanation
Indices: 8395390--8395485 Score: 114
Period size: 21 Copynumber: 4.4 Consensus size: 23
8395380 CCTGATCAGT
** *
8395390 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACGAGGTGCCTGAA
8395412 A-ACGACACACGAGGTGCCT--A
1 ATACGACACACGAGGTGCCTGAA
*
8395432 ATATGACACACGAGGTGCCTG--
1 ATACGACACACGAGGTGCCTGAA
8395453 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACGAGGTGCCTGAA
8395476 ATACGACACA
1 ATACGACACA
8395486 TAAAGTGCCT
Statistics
Matches: 65, Mismatches: 5, Indels: 7
0.84 0.06 0.09
Matches are distributed among these distances:
20 2 0.03
21 52 0.80
22 1 0.02
23 10 0.15
ACGTcount: A:0.38, C:0.26, G:0.22, T:0.15
Consensus pattern (23 bp):
ATACGACACACGAGGTGCCTGAA
Found at i:8395737 original size:15 final size:15
Alignment explanation
Indices: 8395712--8395769 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
8395702 TCATATATAT
8395712 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
8395728 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
8395743 AATAATTTCAATCAA
1 TATAAATTCAATCAA
8395758 TATAAATTCAAT
1 TATAAATTCAAT
8395770 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:8397489 original size:46 final size:46
Alignment explanation
Indices: 8397422--8397586 Score: 183
Period size: 46 Copynumber: 3.6 Consensus size: 46
8397412 TTTGGGCATT
*
8397422 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTC
* * *
8397468 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTTA--GATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG--TC
* * * *
8397515 CGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAAGGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTC
**
8397561 CGAGTTCGTTGAGTTGAGTCCGAGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTT
8397587 TGCGTATGGG
Statistics
Matches: 101, Mismatches: 11, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
43 5 0.05
45 5 0.05
46 52 0.51
47 27 0.27
48 6 0.06
50 6 0.06
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTC
Found at i:8397575 original size:93 final size:93
Alignment explanation
Indices: 8397416--8397586 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
8397406 GGGATATTTG
* * * *
8397416 GGCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGGCCCGAACTCGTTGAG
8397481 TTGAGTCCGAGTTCGTTAGATGTAACTA
66 TTGAGTCCGAGTTCGTTAGATGTAACTA
* * **
8397509 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAAGGCCCGAGTTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGGCCCGAACTCGTTGAG
8397574 TTGAGTCCGAGTT
66 TTGAGTCCGAGTT
8397587 TGCGTATGGG
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTTAGATGTAACTA
Found at i:8401340 original size:15 final size:15
Alignment explanation
Indices: 8401318--8401388 Score: 67
Period size: 15 Copynumber: 4.7 Consensus size: 15
8401308 GTATCTTGGG
*
8401318 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
8401333 TCTT-TTTATTCTGGA
1 T-TTCTTTATTCTGGA
*
8401348 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
8401363 TTT-TTCTA-TCTTGAA
1 TTTCTT-TATTC-TGGA
8401378 TTTCTTTATTC
1 TTTCTTTATTC
8401389 GATTTTCTTG
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
14 6 0.13
15 34 0.74
16 6 0.13
ACGTcount: A:0.13, C:0.15, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:8401354 original size:30 final size:30
Alignment explanation
Indices: 8401309--8401386 Score: 79
Period size: 30 Copynumber: 2.6 Consensus size: 30
8401299 CATAGTATCG
**
8401309 TATCTTGGGTTTCTTTATCCTGGATCTTTT-
1 TATCTTGAATTTCTTTATCCTGGAT-TTTTC
* * *
8401339 TAT-TCTGGATTTCTTTATTCTGGGTTTTTC
1 TATCT-TGAATTTCTTTATCCTGGATTTTTC
8401369 TATCTTGAATTTCTTTAT
1 TATCTTGAATTTCTTTAT
8401387 TCGATTTTCT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
29 5 0.12
30 35 0.85
31 1 0.02
ACGTcount: A:0.13, C:0.14, G:0.14, T:0.59
Consensus pattern (30 bp):
TATCTTGAATTTCTTTATCCTGGATTTTTC
Found at i:8410165 original size:18 final size:18
Alignment explanation
Indices: 8410142--8410205 Score: 65
Period size: 18 Copynumber: 3.6 Consensus size: 18
8410132 GAACAATTAT
*
8410142 TTATTCAGTAATAGTCAG
1 TTATTCAGTAATAATCAG
* * *
8410160 TTATTCGGTAACAATCAA
1 TTATTCAGTAATAATCAG
* * *
8410178 ATATTCAATAATAACCAG
1 TTATTCAGTAATAATCAG
8410196 TTATTCAGTA
1 TTATTCAGTA
8410206 TCGATCAATT
Statistics
Matches: 34, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.39, C:0.14, G:0.11, T:0.36
Consensus pattern (18 bp):
TTATTCAGTAATAATCAG
Found at i:8410549 original size:45 final size:45
Alignment explanation
Indices: 8410500--8410644 Score: 182
Period size: 45 Copynumber: 3.1 Consensus size: 45
8410490 GTAACAGTAT
* *
8410500 AGTAACAATATCCGACACACAAAGTGTCGAATCGGTAACGGTAAC
1 AGTAACAATATTCGACACACAAAGTGCCGAATCGGTAACGGTAAC
*
8410545 AGTAACAATATTCGACACACAAAGTACCGAATCGGTAACAGTAACAGTAAC
1 AGTAACAATATTCGACACACAAAGTGCCGAATCGGTAAC-G-----GTAAC
* * *
8410596 AGTAACAATATTCGACACACAAAGTGCCGAATCGATAACAGTAGC
1 AGTAACAATATTCGACACACAAAGTGCCGAATCGGTAACGGTAAC
8410641 AGTA
1 AGTA
8410645 GCGGTAACAG
Statistics
Matches: 87, Mismatches: 7, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
45 44 0.51
46 1 0.01
51 42 0.48
ACGTcount: A:0.43, C:0.21, G:0.18, T:0.18
Consensus pattern (45 bp):
AGTAACAATATTCGACACACAAAGTGCCGAATCGGTAACGGTAAC
Found at i:8410597 original size:51 final size:51
Alignment explanation
Indices: 8410484--8410653 Score: 219
Period size: 51 Copynumber: 3.5 Consensus size: 51
8410474 ATCCGAAACA
* * *
8410484 GTAACAGTAACAGT-ATAGTAACAATATCCGACACACAAAGTGTCGAATCG
1 GTAACAGTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
*
8410534 GTAAC-G-----GTAACAGTAACAATATTCGACACACAAAGTACCGAATCG
1 GTAACAGTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
8410579 GTAACAGTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
1 GTAACAGTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
* * * *
8410630 ATAACAGTAGCAGTAGCGGTAACA
1 GTAACAGTAACAGTAACAGTAACA
8410654 GTAACCAGCA
Statistics
Matches: 104, Mismatches: 9, Indels: 13
0.83 0.07 0.10
Matches are distributed among these distances:
44 2 0.02
45 37 0.36
46 1 0.01
49 1 0.01
50 5 0.05
51 58 0.56
ACGTcount: A:0.42, C:0.21, G:0.19, T:0.18
Consensus pattern (51 bp):
GTAACAGTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
Found at i:8412190 original size:20 final size:21
Alignment explanation
Indices: 8412155--8412194 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
8412145 CTGCTCTCTG
*
8412155 TTTCGTTTCATTTTGTTTCTA
1 TTTCCTTTCATTTTGTTTCTA
8412176 TTTCCTTTC-TTTTGTTTCT
1 TTTCCTTTCATTTTGTTTCT
8412195 TTAGTTTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.05, C:0.17, G:0.07, T:0.70
Consensus pattern (21 bp):
TTTCCTTTCATTTTGTTTCTA
Found at i:8412259 original size:8 final size:8
Alignment explanation
Indices: 8412246--8412274 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
8412236 TATCTTTATT
8412246 ATATAATA
1 ATATAATA
8412254 ATATAATA
1 ATATAATA
8412262 ATATAATA
1 ATATAATA
8412270 ATATA
1 ATATA
8412275 CAAAACAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:8415471 original size:131 final size:131
Alignment explanation
Indices: 8415214--8415459 Score: 395
Period size: 131 Copynumber: 1.9 Consensus size: 131
8415204 AATTTAGAGA
* *
8415214 ACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAGCAAACAGGAAATCGCAACCCAGCAC
1 ACATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAGCAC
* *
8415279 GATAGGGCACGATTCCCCAAATTGCCAAACATCGAGTATTAACTTCGTTTTGAAGAGTTTTTAAA
66 GATAGAGCACGATTCCCCAAATTACCAAACATCGAGTATTAACTTCGTTTTGAAGAGTTTTTAAA
8415344 G
131 G
* *
8415345 ACATGAGTGAAATTCCAAAGGAATATTCGATTGTTTTGAACAAACGGGAAATCGCAACCCAGCAC
1 ACATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAGCAC
* * **
8415410 GATAGAGCACGATT-CCCGAATTACTAAACATCGAGTATTGCCTTCGTTTT
66 GATAGAGCACGATTCCCCAAATTACCAAACATCGAGTATTAACTTCGTTTT
8415460 AGTGAATTTT
Statistics
Matches: 105, Mismatches: 10, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
130 31 0.30
131 74 0.70
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (131 bp):
ACATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAGCAC
GATAGAGCACGATTCCCCAAATTACCAAACATCGAGTATTAACTTCGTTTTGAAGAGTTTTTAAA
G
Found at i:8427657 original size:13 final size:14
Alignment explanation
Indices: 8427639--8427673 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
8427629 ATTGCTCATT
8427639 TATTTAAA-CATAA
1 TATTTAAATCATAA
8427652 TATTTAAATCATAA
1 TATTTAAATCATAA
8427666 -ATTTAAAT
1 TATTTAAAT
8427674 TCATTAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 16 0.76
14 5 0.24
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (14 bp):
TATTTAAATCATAA
Found at i:8427677 original size:14 final size:13
Alignment explanation
Indices: 8427640--8427683 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
8427630 TTGCTCATTT
8427640 ATTTAAA-CATAA
1 ATTTAAATCATAA
8427652 TATTTAAATCATAA
1 -ATTTAAATCATAA
*
8427666 ATTTAAATTCATTA
1 ATTTAAA-TCATAA
8427680 ATTT
1 ATTT
8427684 TTATATTTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
13 14 0.50
14 14 0.50
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (13 bp):
ATTTAAATCATAA
Found at i:8427993 original size:43 final size:43
Alignment explanation
Indices: 8427858--8428176 Score: 286
Period size: 42 Copynumber: 7.6 Consensus size: 43
8427848 TTATTTAGTG
** * *
8427858 GCGTTTGTGGGAAAAATGCCGCTAAAGG-CCTGTTTTATAG-T
1 GCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGTTCTATAGCT
* * *
8427899 G-GTTTTTTTGGGAAAAGCGTCGCTAAAGGT-TTGTTCTATAGCG
1 GCG--TTTGTGGGAAAAGCGCCGCTAAAGGTCTTGTTCTATAGCT
* * *
8427942 GCGTTTGTGGGAAAAGCACCGCTAAAGGTCATATTCTATAGCT
1 GCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGTTCTATAGCT
* * * ** *
8427985 GTGTTTGTGGG-AGAGCACCATTAAAGGTCATGTTCTAT-G--
1 GCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGTTCTATAGCT
* * * *
8428024 GCGTTTGTGGGAAAAGCG-TGCTAAAAGTCTTGTTCTATTGCA
1 GCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGTTCTATAGCT
* *
8428066 GCTTTTGTGGGAAAAGCGCCGCTAAAAGTCTTGTTCTATAG-T
1 GCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGTTCTATAGCT
*
8428108 GGCCTTTGT-GGAAAAGCGCCGCTAAAGGTCTTGTTCTATAG-T
1 -GCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGTTCTATAGCT
*
8428150 GGCGTTTGT-GAAAAAGGCGCCGCTAAA
1 -GCGTTTGTGGGAAAA-GCGCCGCTAAA
8428177 AGTCATTTTT
Statistics
Matches: 231, Mismatches: 34, Indels: 24
0.80 0.12 0.08
Matches are distributed among these distances:
39 25 0.11
40 6 0.03
41 2 0.01
42 138 0.60
43 59 0.26
44 1 0.00
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (43 bp):
GCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGTTCTATAGCT
Found at i:8428134 original size:124 final size:124
Alignment explanation
Indices: 8427907--8428179 Score: 311
Period size: 124 Copynumber: 2.2 Consensus size: 124
8427897 GTGGTTTTTT
* * *
8427907 TGGGAAAAGCGTCGCTAAAGGTTTGTTCTATAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTC
1 TGGGAAAAGCGTCGCTAAAAGTTTGTTCTATAGCAGCGTTTGTGGGAAAAGCACCGCTAAAAGTC
* * *
8427972 ATATTCTATAGCTGTGTTTGTGGGAGAGCACCATTAAAGGTCATGTTCTATGGCGTTTG
66 ATATTCTATAGCTGTGTTTGTGGAAAAGCACCACTAAAGGTCATGTTCTATGGCGTTTG
* * *
8428031 TGGGAAAAGCGT-GCTAAAAGTCTTGTTCTATTGCAGCTTTTGTGGGAAAAGCGCCGCTAAAAGT
1 TGGGAAAAGCGTCGCTAAAAGT-TTGTTCTATAGCAGCGTTTGTGGGAAAAGCACCGCTAAAAGT
* * * * *
8428095 CTTGTTCTATAG-TG-GCCTTTGTGGAAAAGCGCCGCTAAAGGTCTTGTTCTATAGTGGCGTTTG
65 CATATTCTATAGCTGTG--TTTGTGGAAAAGCACCACTAAAGGTCATGTTC--TA-TGGCGTTTG
* *
8428158 T-GAAAAAGGCGCCGCTAAAAGT
1 TGGGAAAA-GCGTCGCTAAAAGT
8428180 CATTTTTATA
Statistics
Matches: 125, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
122 1 0.01
123 10 0.08
124 85 0.68
126 7 0.06
127 13 0.10
128 9 0.07
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (124 bp):
TGGGAAAAGCGTCGCTAAAAGTTTGTTCTATAGCAGCGTTTGTGGGAAAAGCACCGCTAAAAGTC
ATATTCTATAGCTGTGTTTGTGGAAAAGCACCACTAAAGGTCATGTTCTATGGCGTTTG
Found at i:8428635 original size:22 final size:23
Alignment explanation
Indices: 8428610--8428658 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
8428600 AAAAGCAGAT
*
8428610 AAGTATTAAA-TCAGGAGCACCA
1 AAGTACTAAATTCAGGAGCACCA
* *
8428632 AAGTGCTAAATTCAGGAGCACCG
1 AAGTACTAAATTCAGGAGCACCA
8428655 AAGT
1 AAGT
8428659 GCAAGTTTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 8 0.35
23 15 0.65
ACGTcount: A:0.41, C:0.18, G:0.22, T:0.18
Consensus pattern (23 bp):
AAGTACTAAATTCAGGAGCACCA
Found at i:8428650 original size:23 final size:23
Alignment explanation
Indices: 8428616--8428691 Score: 77
Period size: 23 Copynumber: 3.3 Consensus size: 23
8428606 AGATAAGTAT
8428616 TAAA-TCAGGAGCACCAAAGTGC
1 TAAATTCAGGAGCACCAAAGTGC
*
8428638 TAAATTCAGGAGCACCGAAGTGC
1 TAAATTCAGGAGCACCAAAGTGC
* * *
8428661 -AAGTTTCAAGAGCACTAGAA-TGC
1 TAA-ATTCAGGAGCACCA-AAGTGC
8428684 TAAATTCA
1 TAAATTCA
8428692 TGAACGCGCT
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
22 6 0.14
23 34 0.77
24 4 0.09
ACGTcount: A:0.39, C:0.20, G:0.21, T:0.20
Consensus pattern (23 bp):
TAAATTCAGGAGCACCAAAGTGC
Found at i:8432463 original size:20 final size:20
Alignment explanation
Indices: 8432438--8432512 Score: 60
Period size: 20 Copynumber: 3.4 Consensus size: 20
8432428 GAATTTTATA
8432438 GAATCAAAGTTACATAAATT
1 GAATCAAAGTTACATAAATT
* * *
8432458 GAATCAAATTATTACTTTTTAATTATA
1 GAATCAAA--GTTAC---ATAA--ATT
8432485 GAATCAAAGTTACATAAATT
1 GAATCAAAGTTACATAAATT
8432505 GAATCAAA
1 GAATCAAA
8432513 TTTTTACATT
Statistics
Matches: 42, Mismatches: 6, Indels: 14
0.68 0.10 0.23
Matches are distributed among these distances:
20 18 0.43
22 7 0.17
25 7 0.17
27 10 0.24
ACGTcount: A:0.48, C:0.09, G:0.08, T:0.35
Consensus pattern (20 bp):
GAATCAAAGTTACATAAATT
Found at i:8433427 original size:5 final size:5
Alignment explanation
Indices: 8433417--8433469 Score: 106
Period size: 5 Copynumber: 10.6 Consensus size: 5
8433407 TAGTTAATAT
8433417 TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA
1 TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA
8433467 TTT
1 TTT
8433470 TTATGTACAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 48 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TTTAA
Found at i:8436978 original size:22 final size:22
Alignment explanation
Indices: 8436950--8436996 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 22
8436940 GCCCAAGGTA
*
8436950 GAAAAAAGAAGAAAAGAAAATGAG
1 GAAAAAAG-A-AAAAGAAAAAGAG
*
8436974 GAAAAATGAAAAAGAAAAAGAG
1 GAAAAAAGAAAAAGAAAAAGAG
8436996 G
1 G
8436997 TACAAACAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 13 0.62
23 1 0.05
24 7 0.33
ACGTcount: A:0.70, C:0.00, G:0.26, T:0.04
Consensus pattern (22 bp):
GAAAAAAGAAAAAGAAAAAGAG
Found at i:8441488 original size:38 final size:37
Alignment explanation
Indices: 8441444--8441554 Score: 106
Period size: 38 Copynumber: 3.0 Consensus size: 37
8441434 TAATTATGTA
8441444 AATATATATAATTTAATTATTAATTACTT-TTTTATTT
1 AATATATATAATTTAATTATTAATTA-TTATTTTATTT
* * *
8441481 AAGTATATAGATATTT-ATTATTTATTATTATTCTA-TT
1 AA-TATATATA-ATTTAATTATTAATTATTATTTTATTT
8441518 AA-AT-TATAATTTATATTATTAAATTATTATTATTATT
1 AATATATATAATTTA-ATTATT-AATTATTATT-TTATT
8441555 AAAAATAAAT
Statistics
Matches: 60, Mismatches: 6, Indels: 15
0.74 0.07 0.19
Matches are distributed among these distances:
33 4 0.07
34 3 0.05
35 8 0.13
36 9 0.15
37 10 0.17
38 22 0.37
39 4 0.07
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (37 bp):
AATATATATAATTTAATTATTAATTATTATTTTATTT
Found at i:8441543 original size:25 final size:26
Alignment explanation
Indices: 8441495--8441543 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
8441485 ATATAGATAT
* **
8441495 TTATTATTTATTATTATTCTATTAAA
1 TTATAATTTATTATTATTAAATTAAA
8441521 TTATAATTTA-TATTATTAAATTA
1 TTATAATTTATTATTATTAAATTA
8441544 TTATTATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 11 0.55
26 9 0.45
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (26 bp):
TTATAATTTATTATTATTAAATTAAA
Found at i:8441554 original size:20 final size:20
Alignment explanation
Indices: 8441502--8441555 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
8441492 TATTTATTAT
*
8441502 TTATTATTATT-CTATTAAA
1 TTATTATTATTATTATTAAA
*
8441521 TTATAATT-TATATTATTAAA
1 TTATTATTAT-TATTATTAAA
8441541 TTATTATTATTATTA
1 TTATTATTATTATTA
8441556 AAAATAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 1 0.03
19 8 0.28
20 19 0.66
21 1 0.03
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (20 bp):
TTATTATTATTATTATTAAA
Found at i:8441821 original size:3 final size:3
Alignment explanation
Indices: 8441815--8441864 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
8441805 AATAATAATA
8441815 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8441863 AT
1 AT
8441865 AAAGTTAATA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:8443017 original size:45 final size:45
Alignment explanation
Indices: 8442966--8443069 Score: 156
Period size: 45 Copynumber: 2.3 Consensus size: 45
8442956 CGACTACTGT
*
8442966 TACTGTTACCGTTACTGTTACTGATTC-GACACTTTGTGTGTCGAA
1 TACTGTTACCGTTACTGTTACAGATTCAG-CACTTTGTGTGTCGAA
* *
8443011 TACTGTTATCGTTACTGTTACAGATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACCGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAA
*
8443056 TACTGTTACTGTTA
1 TACTGTTACCGTTA
8443070 TTGCTAATGC
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
45 52 0.98
46 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.19, T:0.42
Consensus pattern (45 bp):
TACTGTTACCGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAA
Found at i:8443066 original size:51 final size:50
Alignment explanation
Indices: 8442951--8443070 Score: 135
Period size: 45 Copynumber: 2.5 Consensus size: 50
8442941 CAGGCACTTA
* * *
8442951 TGTGCCGACTACTGTTACTGTTACCGTTACTGTTACTGATTCGACACTTTG
1 TGTGTCGA-TACTGTTACTGTTATCGTTACTGTTACAGATTCGACACTTTG
8443002 TGTGTCGA-A----TACTGTTATCGTTACTGTTACAGATTC-AGCACTTTG
1 TGTGTCGATACTGTTACTGTTATCGTTACTGTTACAGATTCGA-CACTTTG
*
8443047 TGTGTTGAATACTGTTACTGTTAT
1 TGTGTCG-ATACTGTTACTGTTAT
8443071 TGCTAATGCT
Statistics
Matches: 58, Mismatches: 4, Indels: 14
0.76 0.05 0.18
Matches are distributed among these distances:
44 1 0.02
45 38 0.66
46 1 0.02
47 1 0.02
49 1 0.02
51 16 0.28
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.42
Consensus pattern (50 bp):
TGTGTCGATACTGTTACTGTTATCGTTACTGTTACAGATTCGACACTTTG
Found at i:8451180 original size:27 final size:27
Alignment explanation
Indices: 8451149--8451210 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
8451139 TTCCTACTGA
*
8451149 CATACAACATATTAAACCCACCTAATG
1 CATACAACATATTAAACCCACCGAATG
*
8451176 CATACAACTTATTAAACCCACCGAATG
1 CATACAACATATTAAACCCACCGAATG
8451203 CAT-CAACA
1 CATACAACA
8451211 ACTTTACTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 4 0.12
27 28 0.88
ACGTcount: A:0.44, C:0.31, G:0.05, T:0.21
Consensus pattern (27 bp):
CATACAACATATTAAACCCACCGAATG
Found at i:8454004 original size:3 final size:3
Alignment explanation
Indices: 8453998--8454105 Score: 85
Period size: 3 Copynumber: 35.7 Consensus size: 3
8453988 TGTCTAATAA
* * * *
8453998 TAT TAT TTT TAT TTT TAT TTT TAT T-T TTT TA- TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* ** * *
8454044 TAT TAAT GTAT TAT TAT TACT AAT TAT TAT TAT TGC TAA TAT TGT TAT
1 TAT T-AT -TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
8454092 TAT TAT TAA TAT TA
1 TAT TAT TAT TAT TA
8454106 GTGTATGTTT
Statistics
Matches: 82, Mismatches: 18, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
2 4 0.05
3 71 0.87
4 6 0.07
5 1 0.01
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:8454359 original size:139 final size:142
Alignment explanation
Indices: 8454088--8454417 Score: 365
Period size: 139 Copynumber: 2.3 Consensus size: 142
8454078 GCTAATATTG
* * * * * *
8454088 TTATTATTATTA-ATATTAGTGTATGTTTTATTATAGATGTATGTATATATATTTTTATATATAG
1 TTATTATTATTATATATTAGTGTAT-ATTTATTATATA-GTATATGTATATATGTATATATATAG
*
8454152 TATTAAATTAATTACTTTATTTTAATATTATTATTATATTATATTTGCTTTTTGCATTTCAACAT
64 CATTAAATTAATTACTTTATTTTAATATTATTATTATATTATATTTGCTTTTTGCATTTCAACAT
8454217 TATTATCATCATTA
129 TATTATCATCATTA
8454231 TTATTATTATTATATATTAGTGTATATTTATTATATACGTATATGTATATATGTATATATATAGC
1 TTATTATTATTATATATTAGTGTATATTTATTATATA-GTATATGTATATATGTATATATATAGC
** * * *
8454296 AGTGT-TTTTTATTACTTTATTTT-A-A-TATT-TT-TATTATATTTGCTTTTTGTATTTCAATA
65 A-T-TAAATTAATTACTTTATTTTAATATTATTATTATATTATATTTGCTTTTTGCATTTCAACA
* *
8454355 TTATTATTATTATTA
128 TTATTATCATCATTA
* * * *
8454370 -TATGTTTTATTATATATGTA-TATATCTTTAATATATA-TATATGTATAT
1 TTAT-TATTATTATATAT-TAGTGTATATTTATTATATAGTATATGTATAT
8454418 GTTTATGTAG
Statistics
Matches: 163, Mismatches: 19, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
137 11 0.07
138 3 0.02
139 65 0.40
140 4 0.02
141 4 0.02
142 1 0.01
143 46 0.28
144 28 0.17
145 1 0.01
ACGTcount: A:0.32, C:0.04, G:0.07, T:0.57
Consensus pattern (142 bp):
TTATTATTATTATATATTAGTGTATATTTATTATATAGTATATGTATATATGTATATATATAGCA
TTAAATTAATTACTTTATTTTAATATTATTATTATATTATATTTGCTTTTTGCATTTCAACATTA
TTATCATCATTA
Found at i:8454379 original size:21 final size:22
Alignment explanation
Indices: 8454355--8454423 Score: 72
Period size: 21 Copynumber: 3.2 Consensus size: 22
8454345 TATTTCAATA
8454355 TTATTAT-TAT-TATTATATGTT
1 TTATTATATATATATTATATG-T
* *
8454376 TTATTATATATGTA-TATATCT
1 TTATTATATATATATTATATGT
*
8454397 TTAATATATATATATGTATATGT
1 TTATTATATATATAT-TATATGT
8454420 TTAT
1 TTAT
8454424 GTAGTATTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
21 20 0.51
22 8 0.21
23 11 0.28
ACGTcount: A:0.33, C:0.01, G:0.06, T:0.59
Consensus pattern (22 bp):
TTATTATATATATATTATATGT
Found at i:8454464 original size:139 final size:136
Alignment explanation
Indices: 8454177--8454464 Score: 293
Period size: 139 Copynumber: 2.1 Consensus size: 136
8454167 TTTATTTTAA
8454177 TATTATTA-TTATATTATATTTGCTTTTTGCATTTCAACATTATTATCATCATTATTATTATTAT
1 TATTATTATTTATATTATATTTGCTTTTTGCATTTCAACATTATTATCATCATTATTATTATTAT
* * *
8454241 TATATATTAGTGTATATTTATTATATACGTATATGTATATATGTATATATATAGCAGTGTTTTTT
66 TATATATTAGTATATATTTATTATATACGTATATGTATATATGTATATATATAACAGTGTTTTGT
*
8454306 ATTACTT
131 A-TACAT
* * * * * * *
8454313 TATTTTAATATTTTTATTATATTTGCTTTTTGTATTTCAATATTATTATTATTATTA-TATGTTT
1 TA--TTATTATTTATATTATATTTGCTTTTTGCATTTCAACATTATTATCATCATTATTAT-TAT
* *
8454377 TATTATATATGTA-TATATCTTTAATATATA--TATATGTATATGTTTATGTAGTAT-TATTAAC
63 TATTATATAT-TAGTATATATTTATTATATACGTATATGTATA----TATGTA-TATATA-TAAC
*
8454438 AATTGTTTTGTA-ACAT
121 -AGTGTTTTGTATACAT
8454454 TATTATTATTT
1 TATTATTATTT
8454465 CTAATATTTA
Statistics
Matches: 125, Mismatches: 15, Indels: 21
0.78 0.09 0.13
Matches are distributed among these distances:
136 2 0.02
137 10 0.08
138 8 0.06
139 75 0.60
140 2 0.02
141 13 0.10
142 6 0.05
143 9 0.07
ACGTcount: A:0.31, C:0.05, G:0.07, T:0.57
Consensus pattern (136 bp):
TATTATTATTTATATTATATTTGCTTTTTGCATTTCAACATTATTATCATCATTATTATTATTAT
TATATATTAGTATATATTTATTATATACGTATATGTATATATGTATATATATAACAGTGTTTTGT
ATACAT
Found at i:8454489 original size:11 final size:11
Alignment explanation
Indices: 8454473--8454512 Score: 71
Period size: 11 Copynumber: 3.6 Consensus size: 11
8454463 TTCTAATATT
8454473 TATATATTATG
1 TATATATTATG
*
8454484 TATATATTATA
1 TATATATTATG
8454495 TATATATTATG
1 TATATATTATG
8454506 TATATAT
1 TATATAT
8454513 ATTTTTAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (11 bp):
TATATATTATG
Found at i:8454489 original size:13 final size:13
Alignment explanation
Indices: 8454473--8454553 Score: 66
Period size: 13 Copynumber: 6.6 Consensus size: 13
8454463 TTCTAATATT
8454473 TATATATTATG--
1 TATATATTATGTA
8454484 TATATATTA--TA
1 TATATATTATGTA
8454495 TATATATTATGTA
1 TATATATTATGTA
*
8454508 TATATATT-TTTA
1 TATATATTATGTA
* * *
8454520 -ACATTATTTTTTA
1 TATA-TATTATGTA
*
8454533 TATATAATATGTA
1 TATATATTATGTA
8454546 TATATATT
1 TATATATT
8454554 TAATATCATA
Statistics
Matches: 56, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
11 20 0.36
12 7 0.12
13 27 0.48
14 2 0.04
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.57
Consensus pattern (13 bp):
TATATATTATGTA
Found at i:8454525 original size:22 final size:22
Alignment explanation
Indices: 8454473--8454550 Score: 62
Period size: 22 Copynumber: 3.8 Consensus size: 22
8454463 TTCTAATATT
*
8454473 TATATATTATGTATATATTATA
1 TATACATTATGTATATATTATA
* *
8454495 TATATATTATGTATATA-TATT
1 TATACATTATGTATATATTATA
*
8454516 TTTAACATTAT-T-T-T-TTATA
1 TAT-ACATTATGTATATATTATA
8454535 TATA-A-TATGTATATAT
1 TATACATTATGTATATAT
8454551 ATTTAATATC
Statistics
Matches: 45, Mismatches: 5, Indels: 14
0.70 0.08 0.22
Matches are distributed among these distances:
16 3 0.07
17 2 0.04
18 2 0.04
19 7 0.16
20 2 0.04
21 6 0.13
22 23 0.51
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.56
Consensus pattern (22 bp):
TATACATTATGTATATATTATA
Found at i:8454584 original size:25 final size:24
Alignment explanation
Indices: 8454525--8454584 Score: 59
Period size: 25 Copynumber: 2.5 Consensus size: 24
8454515 TTTTAACATT
*
8454525 ATTTTTTATATATAATATGTATAT
1 ATTTTTTATATATAATATGTATAC
* * *
8454549 ATATTTAATATCATATTAT-TCATAC
1 ATTTTTTATAT-ATAATATGT-ATAC
8454574 ATTTTTTATAT
1 ATTTTTTATAT
8454585 TATCCCATGT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
24 10 0.36
25 18 0.64
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.57
Consensus pattern (24 bp):
ATTTTTTATATATAATATGTATAC
Found at i:8454769 original size:29 final size:27
Alignment explanation
Indices: 8454694--8454769 Score: 66
Period size: 28 Copynumber: 2.7 Consensus size: 27
8454684 TATATGTATG
*
8454694 TATATATATATTTT-TTTCTTTTATTAA
1 TATATAT-TATTTTATTTTTTTTATTAA
* *
8454721 TATATTATTATCATTA-TTTTTTTACTTTA
1 TATA-TATTAT-TTTATTTTTTTTA-TTAA
8454750 TATTATATTATTTTATTTTT
1 TA-TATATTATTTTATTTTT
8454770 GAACATACTT
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
27 7 0.18
28 15 0.38
29 15 0.38
30 2 0.05
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.68
Consensus pattern (27 bp):
TATATATTATTTTATTTTTTTTATTAA
Found at i:8458635 original size:22 final size:22
Alignment explanation
Indices: 8458610--8458654 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
8458600 ATTCATGACT
*
8458610 AACATTCATTCGTCATTTATTC
1 AACATTCATTCGTCATTCATTC
*
8458632 AACATTCATTTGTCATTCATTC
1 AACATTCATTCGTCATTCATTC
8458654 A
1 A
8458655 TTCATTCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.29, C:0.22, G:0.04, T:0.44
Consensus pattern (22 bp):
AACATTCATTCGTCATTCATTC
Found at i:8467028 original size:75 final size:72
Alignment explanation
Indices: 8466907--8467194 Score: 335
Period size: 75 Copynumber: 3.7 Consensus size: 72
8466897 ATTCTGATGT
* * *
8466907 TTTTCAATTTATGTTTCAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAGACG
1 TTTTCAATTT-TGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
8466972 TTGAGGTA
65 TTGAGGTA
8466980 TTTTCAATTTCTGACTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTT-TG--TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
*
8467045 CGCTGAGGTAA
63 CGTTGAGGT-A
*
8467056 TTTT-AATTTTCGTTTTTCAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGGGTTGAG
1 TTTTCAATTTT-G--TTTC-A---A------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
8467120 CCTCAGGACACGTTGAGGTA
53 CCTCAGGACACGTTGAGGTA
8467140 TTTTCAATTTTTGTTCGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TTTTCAA-TTTTGTT--TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
8467195 TCTCGGGCCA
Statistics
Matches: 187, Mismatches: 10, Indels: 34
0.81 0.04 0.15
Matches are distributed among these distances:
73 12 0.06
74 1 0.01
75 98 0.52
76 6 0.03
79 1 0.01
81 1 0.01
83 2 0.01
84 6 0.03
85 56 0.30
86 4 0.02
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (72 bp):
TTTTCAATTTTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGT
TGAGGTA
Done.