Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 250 of 290
Found at i:81116489 original size:21 final size:21
Alignment explanation
Indices: 81116465--81116504 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
81116455 TATATGATAG
81116465 TTATCATATTA-TTATATTTCA
1 TTAT-ATATTATTTATATTTCA
*
81116486 TTATATTTTATTTATATTT
1 TTATATATTATTTATATTT
81116505 TTTACTACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (21 bp):
TTATATATTATTTATATTTCA
Found at i:81116533 original size:10 final size:10
Alignment explanation
Indices: 81116465--81116537 Score: 53
Period size: 10 Copynumber: 7.2 Consensus size: 10
81116455 TATATGATAG
81116465 TTATCATATTA
1 TTAT-ATATTA
81116476 TTATAT-TTCA
1 TTATATATT-A
*
81116486 TTATATTTTA
1 TTATATATTA
81116496 TT-TATATT-
1 TTATATATTA
* *
81116504 TTTTACTACATA
1 TTATA-TA-TTA
*
81116516 TCATATATTA
1 TTATATATTA
81116526 TTATATATTA
1 TTATATATTA
81116536 TT
1 TT
81116538 CCCAATATTA
Statistics
Matches: 50, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
8 2 0.04
9 9 0.18
10 27 0.54
11 9 0.18
12 3 0.06
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (10 bp):
TTATATATTA
Found at i:81116569 original size:7 final size:7
Alignment explanation
Indices: 81116555--81116590 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
81116545 TTATCTTCCT
81116555 TTTATTA
1 TTTATTA
*
81116562 TATATTA
1 TTTATTA
81116569 TTTCATTA
1 TTT-ATTA
81116577 TTTATTA
1 TTTATTA
81116584 TTTATTA
1 TTTATTA
81116591 GTATAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (7 bp):
TTTATTA
Found at i:81116582 original size:15 final size:14
Alignment explanation
Indices: 81116555--81116595 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
81116545 TTATCTTCCT
81116555 TTTATTATATATTA
1 TTTATTATATATTA
*
81116569 TTTCATTATTTATTA
1 TTT-ATTATATATTA
81116584 TTTATTAGTATA
1 TTTATTA-TATA
81116596 AAAAAATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 7 0.30
15 16 0.70
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (14 bp):
TTTATTATATATTA
Found at i:81119174 original size:12 final size:12
Alignment explanation
Indices: 81119157--81119186 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
81119147 CCTGTAAAAT
81119157 AGTAAAAATAAC
1 AGTAAAAATAAC
81119169 AGTAAAAATAAC
1 AGTAAAAATAAC
81119181 AGTAAA
1 AGTAAA
81119187 GGGGAAGTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.67, C:0.07, G:0.10, T:0.17
Consensus pattern (12 bp):
AGTAAAAATAAC
Found at i:81120105 original size:20 final size:20
Alignment explanation
Indices: 81120067--81120114 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
81120057 TAAATTCTAA
**
81120067 AAAGATAAATACATTTAATT
1 AAAGATAAATACAGATAATT
*
81120087 AAAGATAAATAGAGATAATT
1 AAAGATAAATACAGATAATT
81120107 AAA-ATAAA
1 AAAGATAAA
81120115 ATCCTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.27
Consensus pattern (20 bp):
AAAGATAAATACAGATAATT
Found at i:81120125 original size:19 final size:18
Alignment explanation
Indices: 81120101--81120144 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
81120091 ATAAATAGAG
81120101 ATAATTAAAATAAAATCCTA
1 ATAATTAAAAT--AATCCTA
*
81120121 A-AATTTAAATAATCCTA
1 ATAATTAAAATAATCCTA
81120138 ATAATTA
1 ATAATTA
81120145 TCCTAATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 8 0.38
18 4 0.19
19 8 0.38
20 1 0.05
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (18 bp):
ATAATTAAAATAATCCTA
Found at i:81120160 original size:15 final size:15
Alignment explanation
Indices: 81120140--81120172 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
81120130 TAATCCTAAT
81120140 AATTATCCTAATATA
1 AATTATCCTAATATA
81120155 AATTATCCTAATATA
1 AATTATCCTAATATA
81120170 AAT
1 AAT
81120173 AAAATGGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (15 bp):
AATTATCCTAATATA
Found at i:81121768 original size:15 final size:15
Alignment explanation
Indices: 81121748--81121795 Score: 62
Period size: 15 Copynumber: 3.1 Consensus size: 15
81121738 TTAATATTTG
*
81121748 AAAATAATAAATAAT
1 AAAATAATAAATAAA
81121763 AAAATAATAAGATAAA
1 AAAATAATAA-ATAAA
81121779 ATAAATAA-AAATAAA
1 A-AAATAATAAATAAA
81121794 AA
1 AA
81121796 TTGGGTTGCC
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
14 1 0.03
15 16 0.53
16 7 0.23
17 6 0.20
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (15 bp):
AAAATAATAAATAAA
Found at i:81124569 original size:12 final size:12
Alignment explanation
Indices: 81124552--81124584 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
81124542 TTCCTTATAA
81124552 AATAGTAAAAAT
1 AATAGTAAAAAT
81124564 AATAGTAAAAAT
1 AATAGTAAAAAT
*
81124576 AACAGTAAA
1 AATAGTAAA
81124585 GGGAAAGTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.67, C:0.03, G:0.09, T:0.21
Consensus pattern (12 bp):
AATAGTAAAAAT
Found at i:81125504 original size:20 final size:20
Alignment explanation
Indices: 81125466--81125513 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
81125456 TAAATTCTAA
**
81125466 AAAGATAAATACATTTAATT
1 AAAGATAAATACAGATAATT
*
81125486 AAAGATAAATAGAGATAATT
1 AAAGATAAATACAGATAATT
81125506 AAA-ATAAA
1 AAAGATAAA
81125514 ATCCTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.27
Consensus pattern (20 bp):
AAAGATAAATACAGATAATT
Found at i:81125524 original size:19 final size:18
Alignment explanation
Indices: 81125500--81125543 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
81125490 ATAAATAGAG
81125500 ATAATTAAAATAAAATCCTA
1 ATAATTAAAAT--AATCCTA
*
81125520 A-AATTTAAATAATCCTA
1 ATAATTAAAATAATCCTA
81125537 ATAATTA
1 ATAATTA
81125544 TCCTAATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 8 0.38
18 4 0.19
19 8 0.38
20 1 0.05
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (18 bp):
ATAATTAAAATAATCCTA
Found at i:81125559 original size:15 final size:15
Alignment explanation
Indices: 81125539--81125571 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
81125529 TAATCCTAAT
81125539 AATTATCCTAATATA
1 AATTATCCTAATATA
81125554 AATTATCCTAATATA
1 AATTATCCTAATATA
81125569 AAT
1 AAT
81125572 AAAATGGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (15 bp):
AATTATCCTAATATA
Found at i:81128100 original size:26 final size:26
Alignment explanation
Indices: 81128071--81128178 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
81128061 TGGTACAAAT
81128071 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
81128097 TGATAATGGATTAGGTAAATATTACA
1 TGATAATGGGTTAGGTAAATGTTCCA
81128123 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
81128149 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81128175 TGAT
1 TGAT
81128179 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81129843 original size:27 final size:27
Alignment explanation
Indices: 81129803--81129889 Score: 117
Period size: 27 Copynumber: 3.2 Consensus size: 27
81129793 AGGAAGCGTC
*
81129803 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
81129830 CTGGTGGCTCTGCCAC-ATATATCT-ATT
1 CTGGTGGCTCTGCCACAAT-TATCTGA-T
81129857 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
81129884 CTGGTG
1 CTGGTG
81129890 ACTTCGTCAC
Statistics
Matches: 54, Mismatches: 1, Indels: 10
0.83 0.02 0.15
Matches are distributed among these distances:
26 8 0.15
27 44 0.81
28 2 0.04
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:81135478 original size:15 final size:15
Alignment explanation
Indices: 81135460--81135491 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
81135450 CCAGAACGAT
81135460 AATAATAATAATATA
1 AATAATAATAATATA
*
81135475 AATAATAATAGTATA
1 AATAATAATAATATA
81135490 AA
1 AA
81135492 ACGATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (15 bp):
AATAATAATAATATA
Found at i:81136522 original size:27 final size:27
Alignment explanation
Indices: 81136484--81136642 Score: 202
Period size: 27 Copynumber: 5.9 Consensus size: 27
81136474 GCGAGGCTAC
*
81136484 CAGATATTGTGGC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
81136511 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
81136537 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
81136564 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
81136591 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
81136618 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
81136643 GACGCTTCCT
Statistics
Matches: 118, Mismatches: 6, Indels: 16
0.84 0.04 0.11
Matches are distributed among these distances:
26 10 0.08
27 103 0.87
28 5 0.04
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:81136577 original size:54 final size:54
Alignment explanation
Indices: 81136484--81136642 Score: 252
Period size: 54 Copynumber: 3.0 Consensus size: 54
81136474 GCGAGGCTAC
* *
81136484 CAGATAT-TGTGGC-GAAGTCACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAA
1 CAGATATATGTGGCAG-AGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGAA
*
81136537 CAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCACCAGAA
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAA
81136591 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
81136643 GACGCTTCCT
Statistics
Matches: 99, Mismatches: 4, Indels: 5
0.92 0.04 0.05
Matches are distributed among these distances:
53 12 0.12
54 86 0.87
55 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (54 bp):
CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAA
Found at i:81138270 original size:26 final size:26
Alignment explanation
Indices: 81138239--81138346 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
81138229 TGAAATGCCC
*
81138239 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
81138265 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
81138291 ATCATGTAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
81138317 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
81138343 ATCA
1 ATCA
81138347 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:81138836 original size:27 final size:27
Alignment explanation
Indices: 81138785--81138837 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
81138775 AATATTTATT
* *
81138785 AAAATATATACGTAATAATAGAAATAA
1 AAAATATATACGTAACAATAAAAATAA
* *
81138812 AAAATATATACGTAGCATTAAAAATA
1 AAAATATATACGTAACAATAAAAATA
81138838 TATACATAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.60, C:0.06, G:0.08, T:0.26
Consensus pattern (27 bp):
AAAATATATACGTAACAATAAAAATAA
Found at i:81139217 original size:11 final size:11
Alignment explanation
Indices: 81139198--81139251 Score: 63
Period size: 11 Copynumber: 4.7 Consensus size: 11
81139188 ATAATAAAAA
81139198 ATATAATATAT
1 ATATAATATAT
81139209 ATATAATATAT
1 ATATAATATAT
*
81139220 ACATAATATAGT
1 ATATAATATA-T
* *
81139232 ATTAAAAAATAT
1 A-TATAATATAT
81139244 ATATAATA
1 ATATAATA
81139252 CATACACATT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
11 25 0.71
12 4 0.11
13 6 0.17
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (11 bp):
ATATAATATAT
Found at i:81139581 original size:19 final size:19
Alignment explanation
Indices: 81139537--81139615 Score: 108
Period size: 19 Copynumber: 4.2 Consensus size: 19
81139527 AATCTTTAAG
*
81139537 GATATGCAATCTTAGATAT
1 GATATACAATCTTAGATAT
81139556 G--ATACAATCTTAGATAT
1 GATATACAATCTTAGATAT
81139573 GATATACAATCTTAGATAT
1 GATATACAATCTTAGATAT
*
81139592 GATATGCAATCTTGAAGATAT
1 GATATACAATCTT--AGATAT
81139613 GAT
1 GAT
81139616 CTTGTAATCT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.30
19 29 0.54
21 9 0.17
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.35
Consensus pattern (19 bp):
GATATACAATCTTAGATAT
Found at i:81139583 original size:36 final size:38
Alignment explanation
Indices: 81139537--81139615 Score: 117
Period size: 36 Copynumber: 2.1 Consensus size: 38
81139527 AATCTTTAAG
*
81139537 GATATGCAATCTTAGATATGATA-CAATCTT-AGATAT
1 GATATACAATCTTAGATATGATAGCAATCTTAAGATAT
81139573 GATATACAATCTTAGATATGATATGCAATCTTGAAGATAT
1 GATATACAATCTTAGATATGATA-GCAATCTT-AAGATAT
81139613 GAT
1 GAT
81139616 CTTGTAATCT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
36 22 0.58
38 7 0.18
40 9 0.24
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.35
Consensus pattern (38 bp):
GATATACAATCTTAGATATGATAGCAATCTTAAGATAT
Found at i:81139627 original size:22 final size:21
Alignment explanation
Indices: 81139537--81139632 Score: 100
Period size: 19 Copynumber: 4.9 Consensus size: 21
81139527 AATCTTTAAG
81139537 GATATGCAATCTT--AGATAT
1 GATATGCAATCTTGAAGATAT
81139556 GATA--CAATCTT--AGATAT
1 GATATGCAATCTTGAAGATAT
*
81139573 GATATACAATCTT--AGATAT
1 GATATGCAATCTTGAAGATAT
81139592 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTTGAAGATAT
* *
81139613 GATCTTGTAATCTTGAAGAT
1 GAT-ATGCAATCTTGAAGAT
81139633 TTAATTTGTA
Statistics
Matches: 69, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.25
19 29 0.42
21 9 0.13
22 14 0.20
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (21 bp):
GATATGCAATCTTGAAGATAT
Found at i:81140715 original size:44 final size:44
Alignment explanation
Indices: 81140649--81140736 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
81140639 GAAATTTTCG
*
81140649 AAAGACGAGCTTAGTTTCGAAGGTTTTAAAATGTTGCGTCCTAA
1 AAAGACGAGCTTAGTTTCGAAGGTTTTAAAATGTTGCATCCTAA
*
81140693 AAAGACGAGCTTAGTTTTGAAGGTTTTAAAATGTTGCATCCTAA
1 AAAGACGAGCTTAGTTTCGAAGGTTTTAAAATGTTGCATCCTAA
81140737 CTTACTGGAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (44 bp):
AAAGACGAGCTTAGTTTCGAAGGTTTTAAAATGTTGCATCCTAA
Found at i:81142843 original size:4 final size:4
Alignment explanation
Indices: 81142829--81142913 Score: 134
Period size: 4 Copynumber: 21.2 Consensus size: 4
81142819 CTCGCAGAAA
* * * *
81142829 ACAT GCAT ACAT ACAT ACAT ACCT ACCT ACCT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
81142877 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
81142914 AAGGTCATGA
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 77 1.00
ACGTcount: A:0.46, C:0.28, G:0.01, T:0.25
Consensus pattern (4 bp):
ACAT
Found at i:81145799 original size:28 final size:28
Alignment explanation
Indices: 81145736--81145814 Score: 126
Period size: 28 Copynumber: 2.9 Consensus size: 28
81145726 AAAATGACTA
*
81145736 TTTTGCCCTTATGA-GGTAAAATG-ATTG
1 TTTTGCCCTT-TTATGGTAAAATGAATTG
81145763 TTTTGCCCTTTTATGGTAAAATGAATTG
1 TTTTGCCCTTTTATGGTAAAATGAATTG
81145791 TTTTGCCCTTTTATGGTAAAATGA
1 TTTTGCCCTTTTATGGTAAAATGA
81145815 CTGTTTTACC
Statistics
Matches: 49, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
26 2 0.04
27 19 0.39
28 28 0.57
ACGTcount: A:0.25, C:0.11, G:0.19, T:0.44
Consensus pattern (28 bp):
TTTTGCCCTTTTATGGTAAAATGAATTG
Found at i:81145827 original size:28 final size:27
Alignment explanation
Indices: 81145725--81145821 Score: 133
Period size: 27 Copynumber: 3.6 Consensus size: 27
81145715 CCTTAATCGA
* *
81145725 TAAAATGACTATTTTGCCCTTATGA-GG
1 TAAAATGACTGTTTTGCCCTT-TTATGG
*
81145752 TAAAATGATTGTTTTGCCCTTTTATGG
1 TAAAATGACTGTTTTGCCCTTTTATGG
*
81145779 TAAAATGAATTGTTTTGCCCTTTTATGG
1 TAAAATG-ACTGTTTTGCCCTTTTATGG
81145807 TAAAATGACTGTTTT
1 TAAAATGACTGTTTT
81145822 ACCCCTGTGT
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
26 2 0.03
27 35 0.55
28 27 0.42
ACGTcount: A:0.27, C:0.11, G:0.18, T:0.44
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTTTATGG
Found at i:81149338 original size:27 final size:27
Alignment explanation
Indices: 81149308--81149382 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 27
81149298 CCTTAATCGA
* **
81149308 TAAAATGATTATTTTTTCCTTATGAGG
1 TAAAATGATTGTTTTGCCCTTATGAGG
* *
81149335 TAAAATAACTGTTTTGCCCTTATGAGG
1 TAAAATGATTGTTTTGCCCTTATGAGG
81149362 TAAAATGATTGTTTTGCCCTT
1 TAAAATGATTGTTTTGCCCTT
81149383 TTATGATAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (27 bp):
TAAAATGATTGTTTTGCCCTTATGAGG
Found at i:81149396 original size:27 final size:26
Alignment explanation
Indices: 81149325--81149403 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 26
81149315 ATTATTTTTT
*
81149325 CCTTATGAGGTAAAATAACTGTTTTGC
1 CCTTATGA-GTAAAATGACTGTTTTGC
*
81149352 CCTTATGAGGTAAAATGATTGTTTTGC
1 CCTTATGA-GTAAAATGACTGTTTTGC
*
81149379 CCTTTTATGA-TAAGATGACTGTTTT
1 CC--TTATGAGTAAAATGACTGTTTT
81149404 ACTCCTATGT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
27 40 0.87
29 6 0.13
ACGTcount: A:0.27, C:0.13, G:0.19, T:0.42
Consensus pattern (26 bp):
CCTTATGAGTAAAATGACTGTTTTGC
Found at i:81151298 original size:11 final size:11
Alignment explanation
Indices: 81151284--81151309 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
81151274 TTAGCTCATC
81151284 ATTAATTAGAA
1 ATTAATTAGAA
81151295 ATTAATTAGAA
1 ATTAATTAGAA
81151306 ATTA
1 ATTA
81151310 TATATGTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (11 bp):
ATTAATTAGAA
Found at i:81155739 original size:4 final size:4
Alignment explanation
Indices: 81155730--81155772 Score: 86
Period size: 4 Copynumber: 10.8 Consensus size: 4
81155720 TTCTCGCAGA
81155730 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
81155773 GAGGTCATGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 39 1.00
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:81173835 original size:45 final size:46
Alignment explanation
Indices: 81173748--81173835 Score: 124
Period size: 46 Copynumber: 1.9 Consensus size: 46
81173738 TGCAGTAGGA
* * *
81173748 TACAAGTCCTATACCCTTGAGCTGCAGTGGGATGGATTGAAGATGG
1 TACAAATCCAATACCCTTGAGCTGCAGTGGGATGGATGGAAGATGG
* *
81173794 TACAAATCCAATACCCTTGGGTTG-AGTGGGATGGATGGAAGA
1 TACAAATCCAATACCCTTGAGCTGCAGTGGGATGGATGGAAGA
81173836 AACCACAAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
45 17 0.46
46 20 0.54
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (46 bp):
TACAAATCCAATACCCTTGAGCTGCAGTGGGATGGATGGAAGATGG
Found at i:81173844 original size:45 final size:46
Alignment explanation
Indices: 81173749--81173845 Score: 106
Period size: 45 Copynumber: 2.1 Consensus size: 46
81173739 GCAGTAGGAT
* * * ****
81173749 ACAAGTCCTATACCCTTGAGCTGCAGTGGGATGGATTGAAGATGGT
1 ACAAATCCAATACCCTTGAGCTGCAGTGGGATGGATGGAAGAAACC
* *
81173795 ACAAATCCAATACCCTTGGGTTG-AGTGGGATGGATGGAAGAAACC
1 ACAAATCCAATACCCTTGAGCTGCAGTGGGATGGATGGAAGAAACC
81173840 ACAAAT
1 ACAAAT
81173846 TTTAAGAAAC
Statistics
Matches: 42, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
45 23 0.55
46 19 0.45
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.23
Consensus pattern (46 bp):
ACAAATCCAATACCCTTGAGCTGCAGTGGGATGGATGGAAGAAACC
Found at i:81173854 original size:17 final size:17
Alignment explanation
Indices: 81173832--81173866 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
81173822 GGATGGATGG
81173832 AAGAAACCACAAATTTT
1 AAGAAACCACAAATTTT
81173849 AAGAAACCACAAATTTT
1 AAGAAACCACAAATTTT
81173866 A
1 A
81173867 TCTTCTTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.17, G:0.06, T:0.23
Consensus pattern (17 bp):
AAGAAACCACAAATTTT
Found at i:81174860 original size:179 final size:179
Alignment explanation
Indices: 81174530--81174861 Score: 445
Period size: 179 Copynumber: 1.9 Consensus size: 179
81174520 TTACAAGTCG
* *
81174530 CAAACCCTATCTCCCTGAAGTTGCAGTGGAGTAGGTTAAAATTACCAACTCTTACCTCCTTGAAG
1 CAAACCCTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAATTACCAACTCTTACCTCATTGAAG
* * *
81174595 TTTCAGCGGAGTAGATCAAAGCTACAAATCTCTTCTCTCTGAAATTACATTAGAGCAAATCGAAG
66 TTTCAACAGAGTAGATCAAAGCTACAAATCTCTTCTCCCTGAAATTACATTAGAGCAAATCGAAG
* *
81174660 CCATAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAACAATACA
131 CCACAATCCATATCTCTCTGAAGTTGCAGTAGAGCAGGATAACAATACA
* * * * *
81174709 CAAACCTTATCTCCTTGAAGTTGCAGTGGAGCAGGTTGAAATTACCAATTCTTATCTCATTGAAG
1 CAAACCCTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAATTACCAACTCTTACCTCATTGAAG
* * * * **
81174774 TTTCAACAGAGTTGATCGAAA-TTATAAATCTCTTTTCCCTGAAATTACATTAGAGCGGATCGAA
66 TTTCAACAGAGTAGATC-AAAGCTACAAATCTCTTCTCCCTGAAATTACATTAGAGCAAATCGAA
*
81174838 G-CACCAATTCATATAC-CTCTGAAG
130 GCCA-CAATCCATAT-CTCTCTGAAG
81174862 ATACAGTGGA
Statistics
Matches: 131, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
178 2 0.02
179 125 0.95
180 4 0.03
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.29
Consensus pattern (179 bp):
CAAACCCTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAATTACCAACTCTTACCTCATTGAAG
TTTCAACAGAGTAGATCAAAGCTACAAATCTCTTCTCCCTGAAATTACATTAGAGCAAATCGAAG
CCACAATCCATATCTCTCTGAAGTTGCAGTAGAGCAGGATAACAATACA
Found at i:81175650 original size:13 final size:13
Alignment explanation
Indices: 81175624--81175667 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
81175614 TTACTGTAAA
* *
81175624 CATTTCACACAAC
1 CATTTCATATAAC
*
81175637 CATTTTATATAAC
1 CATTTCATATAAC
*
81175650 CAATTCATATAAC
1 CATTTCATATAAC
81175663 CATTT
1 CATTT
81175668 GCCATCTGGT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.39, C:0.25, G:0.00, T:0.36
Consensus pattern (13 bp):
CATTTCATATAAC
Found at i:81175825 original size:46 final size:46
Alignment explanation
Indices: 81175750--81176024 Score: 336
Period size: 46 Copynumber: 6.0 Consensus size: 46
81175740 TTATCTTCGA
* * * * *
81175750 CATGATGCCATAGTATCTTTCAACTATGGTTTTACTCGTTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTC-ATTTCATGT
* * * **
81175796 CATGTTGCCATGGTATCTTTTAACCATGGTTTTATTCATTTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGT
*
81175843 CATGTTGCCATGGTATCTTTCAACCATGGTCTTAGTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * *
81175889 CAAGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * * *
81175935 TATGTTGCCATGGTATCTTTTAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * *
81175981 CAGGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
81176025 TTTAGAGAGC
Statistics
Matches: 204, Mismatches: 23, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
46 167 0.82
47 37 0.18
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
Found at i:81178438 original size:18 final size:19
Alignment explanation
Indices: 81178403--81178438 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
81178393 ACACCTTCAA
81178403 TTTTCCCTTTTCTTCTTTG
1 TTTTCCCTTTTCTTCTTTG
*
81178422 TTTTCTCTTTT-TTCTTT
1 TTTTCCCTTTTCTTCTTT
81178439 CTTTCCTTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.00, C:0.22, G:0.03, T:0.75
Consensus pattern (19 bp):
TTTTCCCTTTTCTTCTTTG
Found at i:81178717 original size:18 final size:19
Alignment explanation
Indices: 81178668--81178717 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 19
81178658 TATAATATAA
81178668 TTATTTAATTAATAAATATC
1 TTATTTAA-TAATAAATATC
81178688 TT-TTATAAAATAATAAATAT-
1 TTATT-T--AATAATAAATATC
81178708 TTATTTAATA
1 TTATTTAATA
81178718 TCTAATACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 10
0.72 0.00 0.28
Matches are distributed among these distances:
18 4 0.15
19 2 0.08
20 6 0.23
21 12 0.46
22 2 0.08
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (19 bp):
TTATTTAATAATAAATATC
Found at i:81178889 original size:19 final size:21
Alignment explanation
Indices: 81178843--81178889 Score: 55
Period size: 19 Copynumber: 2.4 Consensus size: 21
81178833 TATAATAAAT
* *
81178843 TAATTTAATATCATTTATTAC
1 TAATTAAATATCATATATTAC
81178864 TAA-TAAATAT-ATATATTA-
1 TAATTAAATATCATATATTAC
81178882 TAATTAAA
1 TAATTAAA
81178890 ATCTAAGTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 3 0.13
19 11 0.48
20 6 0.26
21 3 0.13
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (21 bp):
TAATTAAATATCATATATTAC
Found at i:81182193 original size:30 final size:30
Alignment explanation
Indices: 81182154--81182239 Score: 154
Period size: 30 Copynumber: 2.9 Consensus size: 30
81182144 AAAACCCTAG
81182154 CCACCTTGCCTCCCACTTGCACCTACTCCA
1 CCACCTTGCCTCCCACTTGCACCTACTCCA
*
81182184 CCACTTTGCCTCCCACTTGCACCTACTCCA
1 CCACCTTGCCTCCCACTTGCACCTACTCCA
*
81182214 CCACCTTGTCTCCCACTTGCACCTAC
1 CCACCTTGCCTCCCACTTGCACCTAC
81182240 ACCATCAAAT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.16, C:0.51, G:0.07, T:0.26
Consensus pattern (30 bp):
CCACCTTGCCTCCCACTTGCACCTACTCCA
Found at i:81182819 original size:15 final size:15
Alignment explanation
Indices: 81182750--81182830 Score: 58
Period size: 15 Copynumber: 5.1 Consensus size: 15
81182740 GAGCTTTGTT
* *
81182750 TTATT-TTATTTTTT
1 TTATTATTATTTATA
*
81182764 TTACTATTATTTATA
1 TTATTATTATTTATA
81182779 TTATTATTATTTCTCATGTA
1 TTATTATTA-TT-T-A--TA
81182799 TATATTATTATTTATA
1 T-TATTATTATTTATA
81182815 TTATTA-TATTATATA
1 TTATTATTATT-TATA
81182830 T
1 T
81182831 ATCCTCTCCA
Statistics
Matches: 55, Mismatches: 4, Indels: 15
0.74 0.05 0.20
Matches are distributed among these distances:
14 8 0.15
15 25 0.45
16 5 0.09
17 1 0.02
18 2 0.04
19 1 0.02
20 5 0.09
21 8 0.15
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (15 bp):
TTATTATTATTTATA
Found at i:81182941 original size:3 final size:3
Alignment explanation
Indices: 81182935--81182964 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
81182925 TTATTGTTTG
81182935 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
81182965 CACCCCTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:81183170 original size:112 final size:114
Alignment explanation
Indices: 81183047--81183252 Score: 292
Period size: 112 Copynumber: 1.8 Consensus size: 114
81183037 GCTATTACTA
* * * * *
81183047 TTATTATTATATATTAGTGTATATTT-TATGTATATATATATTTATATATAGTATTGTTTTTTA-
1 TTATTATTATATAGTAGTGTATATTTCTAT-TATATACATATATATATATAGTATTATTATTTAC
* *
81183110 TTACTTTAAT-TTAATATTTTTATTATATTTGCTTTCTGTATTTCTATAT
65 TTACTTTAATATTAATATTATCATTATATTTGCTTTCTGTATTTCTATAT
*
81183159 TTATTATTATATAGTAGTGTGTATTTCTATTATATACATATATATATATAGTATTATTATTTACT
1 TTATTATTATATAGTAGTGTATATTTCTATTATATACATATATATATATAGTATTATTATTTAC-
*
81183224 TTACTTTAATATTATTATTATCATTATAT
65 TTACTTTAATATTAATATTATCATTATAT
81183253 CCAACCCAAT
Statistics
Matches: 81, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
112 53 0.65
113 3 0.04
114 10 0.12
115 15 0.19
ACGTcount: A:0.31, C:0.04, G:0.06, T:0.59
Consensus pattern (114 bp):
TTATTATTATATAGTAGTGTATATTTCTATTATATACATATATATATATAGTATTATTATTTACT
TACTTTAATATTAATATTATCATTATATTTGCTTTCTGTATTTCTATAT
Found at i:81189891 original size:18 final size:18
Alignment explanation
Indices: 81189868--81189909 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
81189858 CTGACGGTTC
81189868 GGAAAGAAACTTTGCCAG
1 GGAAAGAAACTTTGCCAG
***
81189886 GGAAAGGGGCTTTGCCAG
1 GGAAAGAAACTTTGCCAG
81189904 GGAAAG
1 GGAAAG
81189910 GGCTTGGAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.33, C:0.14, G:0.38, T:0.14
Consensus pattern (18 bp):
GGAAAGAAACTTTGCCAG
Found at i:81189914 original size:17 final size:18
Alignment explanation
Indices: 81189877--81189911 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
81189867 CGGAAAGAAA
81189877 CTTTGCCAGGGAAAGGGG
1 CTTTGCCAGGGAAAGGGG
81189895 CTTTGCCAGGGAAAGGG
1 CTTTGCCAGGGAAAGGG
81189912 CTTGGAAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.17, G:0.43, T:0.17
Consensus pattern (18 bp):
CTTTGCCAGGGAAAGGGG
Found at i:81191823 original size:15 final size:15
Alignment explanation
Indices: 81191803--81191835 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
81191793 TTTAAAAATT
81191803 TTATGGGATGCGTGC
1 TTATGGGATGCGTGC
81191818 TTATGGGATGCGTGC
1 TTATGGGATGCGTGC
81191833 TTA
1 TTA
81191836 GCCAACACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.15, C:0.12, G:0.36, T:0.36
Consensus pattern (15 bp):
TTATGGGATGCGTGC
Found at i:81195219 original size:87 final size:87
Alignment explanation
Indices: 81194823--81195788 Score: 1121
Period size: 87 Copynumber: 11.2 Consensus size: 87
81194813 CTAGAATCAG
* * * ** *
81194823 TGAATTTACAGATCTTATCTCCCTAAGCAGTAGGGAAACAAATCGAGGTTGATGGGCCTTAAACC
1 TGAATTTACAGATCTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACC
*
81194888 CCTAAGCAGTAGGGTAACAGAC
66 CCTAAGCAGTAGGGTAACAGGC
* * ** * * *
81194910 CGAA-TTGCAGATCTTATTTCCCTAAGCAGTAGTGG-AGCAGATCGAAGACAAAGGGTCTTAAAC
1 TGAATTTACAGATCTTATCCCCCTAAGCAGTAG-GGAAACAGATCGAAGACGAAGGGCCTTAAAC
*
81194973 CCCTAAGCAGTAGGGTAACAGAC
65 CCCTAAGCAGTAGGGTAACAGGC
** * * *
81194996 CAAATTGT--AGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATCGAAGACGAAGGGTCTTAAA
1 TGAATT-TACAGATCTTATCCCCCTAAGCAGTAG-GGAAACAGATCGAAGACGAAGGGCCTTAAA
* *
81195058 CCCCTAAGTAGTAGGGTAACAGAC
64 CCCCTAAGCAGTAGGGTAACAGGC
* * * * * * *
81195082 -CAAATTGCAGATCTTATCTCCCTACGCAGTAGTGG-AGCAGATCAAAGACGAAGGGCCTTAAAC
1 TGAATTTACAGATCTTATCCCCCTAAGCAGTAG-GGAAACAGATCGAAGACGAAGGGCCTTAAAC
*
81195145 CCCGAAGCAGTAGGGTAACAGGC
65 CCCTAAGCAGTAGGGTAACAGGC
* * * *
81195168 TGAATTTCCAGATCTTAACCCCCTATGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACC
1 TGAATTTACAGATCTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACC
*
81195233 CCTAAGCAGTAGGGTAACAGAC
66 CCTAAGCAGTAGGGTAACAGGC
* * * * * * *
81195255 -CAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATCGAAGACGAAGAGTCTTAAAC
1 TGAATTTACAGATCTTATCCCCCTAAGCAGTAG-GGAAACAGATCGAAGACGAAGGGCCTTAAAC
81195318 CCCTAAGCAGTAGGGTAACAGGC
65 CCCTAAGCAGTAGGGTAACAGGC
* * ** * *
81195341 TGAATTTACAGATCTTATCCCCCTAAGCAATAGTGG-AGCAGATCGAAGGTG-ATGGCCTTAACC
1 TGAATTTACAGATCTTATCCCCCTAAGCAGTAG-GGAAACAGATCGAAGACGAAGGGCCTTAAAC
*
81195404 CCCTAAGCAGTAGGGTAGCAGGC
65 CCCTAAGCAGTAGGGTAACAGGC
* * * * *
81195427 TAAATTTACAGATCTTAACCTCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCCTTAAACC
1 TGAATTTACAGATCTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACC
*
81195492 CCTAAGCAGTAGGGTAACAGGT
66 CCTAAGCAGTAGGGTAACAGGC
* * * * * * *
81195514 TGAATTTAAAGATCTTAACCCCCTAAGCAGTAGGGAAACAAATCGAAGGCGATGGACCTTAACCC
1 TGAATTTACAGATCTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACC
*
81195579 CCTAAGCAGTAGGATAACAGGC
66 CCTAAGCAGTAGGGTAACAGGC
* * *
81195601 TGAATTTACAGATCTTAACCCCCTAAGTAGTAGGGAAACAGATCGAAGGC-AATGGGCCTTAAAC
1 TGAATTTACAGATCTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAA-GGGCCTTAAAC
81195665 CCCTAAGCAGTAGGGTAACAGGC
65 CCCTAAGCAGTAGGGTAACAGGC
* * * *
81195688 TGAATTTACAGATCTTAACCCCTTAAGCAGTAGAGAAACAGATCGAAGACGATA-AGCCTTAAAC
1 TGAATTTACAGATCTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGACGA-AGGGCCTTAAAC
*
81195752 CCCTAAGCAGTAGGGTAACAGGT
65 CCCTAAGCAGTAGGGTAACAGGC
*
81195775 TAAATTTACAGATC
1 TGAATTTACAGATC
81195789 CTAAACAGTA
Statistics
Matches: 775, Mismatches: 90, Indels: 28
0.87 0.10 0.03
Matches are distributed among these distances:
84 1 0.00
85 5 0.01
86 368 0.47
87 398 0.51
88 2 0.00
89 1 0.00
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (87 bp):
TGAATTTACAGATCTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACC
CCTAAGCAGTAGGGTAACAGGC
Found at i:81195254 original size:173 final size:173
Alignment explanation
Indices: 81194823--81195772 Score: 1182
Period size: 173 Copynumber: 5.5 Consensus size: 173
81194813 CTAGAATCAG
* * * * ** *
81194823 TGAATTTACAGATCTTATCTCCCTAAGCAGTAGGGAAACAAATCGAGGTTGATGGGCCTTAAACC
1 TGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACC
* *
81194888 CCTAAGCAGTAGGGTAACAGACCGAATTGCAGATCTTATTTCCCTAAGCAGTAGTGGAGCAGATC
66 CCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
* * *
81194953 GAAGACAAAGGGTCTTAAACCCCTAAGCAGTAGGGTAACAGAC
131 GAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGC
** * * * *
81194996 CAAATTGT--AGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATCGAAGACGAAGGGTCTTAAA
1 TGAATT-TACAGATCTTAACCCCCTAAGCAGTAG-GGAAACAGATCGAAGACGAAGGGCCTTAAA
* *
81195058 CCCCTAAGTAGTAGGGTAACAGACCAAATTGCAGATCTTATCTCCCTACGCAGTAGTGGAGCAGA
64 CCCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
* *
81195123 TCAAAGACGAAGGGCCTTAAACCCCGAAGCAGTAGGGTAACAGGC
129 TCGAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGC
* * *
81195168 TGAATTTCCAGATCTTAACCCCCTATGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACC
1 TGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACC
81195233 CCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
66 CCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
* *
81195298 GAAGACGAAGAGTCTTAAACCCCTAAGCAGTAGGGTAACAGGC
131 GAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGC
* * * ** * *
81195341 TGAATTTACAGATCTTATCCCCCTAAGCAATAGTGG-AGCAGATCGAAGGTG-ATGGCCTTAACC
1 TGAATTTACAGATCTTAACCCCCTAAGCAGTAG-GGAAACAGATCGAAGACGAAGGGCCTTAAAC
* * * * * *
81195404 CCCTAAGCAGTAGGGTAGCAGGCTAAATTTACAGATCTTAAC-CTCCTAAGCAGTAG-GGAAACA
65 CCCTAAGCAGTAGGGTAACAGACCAAA-TTGCAGATCTTATCTC-CCTAAGCAGTAGTGG-AGCA
* * *
81195467 GATCGAAGATGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGT
127 GATCGAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGC
* * * * * *
81195514 TGAATTTAAAGATCTTAACCCCCTAAGCAGTAGGGAAACAAATCGAAGGCGATGGACCTTAACCC
1 TGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACC
* * * * * * * * *
81195579 CCTAAGCAGTAGGATAACAGGCTGAATTTACAGATCTTAACCCCCTAAGTAGTAG-GGAAACAGA
66 CCTAAGCAGTAGGGTAACAGAC-CAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGA
*
81195643 TCGAAGGC-AATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGC
129 TCGAAGACGAA-GGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGC
* * *
81195688 TGAATTTACAGATCTTAACCCCTTAAGCAGTAGAGAAACAGATCGAAGACGATA-AGCCTTAAAC
1 TGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGA-AGGGCCTTAAAC
81195752 CCCTAAGCAGTAGGGTAACAG
65 CCCTAAGCAGTAGGGTAACAG
81195773 GTTAAATTTA
Statistics
Matches: 683, Mismatches: 79, Indels: 29
0.86 0.10 0.04
Matches are distributed among these distances:
171 1 0.00
172 189 0.28
173 310 0.45
174 180 0.26
175 3 0.00
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (173 bp):
TGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACC
CCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
GAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGC
Found at i:81195728 original size:43 final size:43
Alignment explanation
Indices: 81195138--81195788 Score: 325
Period size: 43 Copynumber: 15.0 Consensus size: 43
81195128 GACGAAGGGC
* * * * *
81195138 CTTAAACCCCGAAGCAGTAGGGTAACAGGCTGAATTTCCAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGGATGAATTTACAGAT
* * *
81195181 CTTAACCCCCTATGCAGTAGGGAAACA-GATCGAA--GACGAAGGGT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGGAT-GAATTTAC--A-GAT
* * ** * *
81195225 CTTAAACCCCTAAGCAGTAGGGTAACA-GACCAAATTGCAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGGATGAATTTACAGAT
* * * *
81195267 CTTATCTCCCTAAGCAGTAGTGG-AGCA-GATCGAA--GACGAAGAGT
1 CTTAACCCCCTAAGCAGTAG-GGAAACAGGAT-GAATTTAC--AGA-T
* * *
81195311 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGGATGAATTTACAGAT
* * * * * * **
81195354 CTTATCCCCCTAAGCAATAGTGG-AGCA-GATCGAAGGTGA-TGGC
1 CTTAACCCCCTAAGCAGTAG-GGAAACAGGAT-GAA-TTTACAGAT
* * * *
81195397 CTTAACCCCCTAAGCAGTAGGGTAGCAGGCTAAATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGGATGAATTTACAGAT
* * * ** **
81195440 CTTAACCTCCTAAGCAGTAGGGAAACA-GATCGAAGATGATGGGC
1 CTTAACCCCCTAAGCAGTAGGGAAACAGGAT-GAA-TTTACAGAT
* * * *
81195484 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTTAAAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGGATGAATTTACAGAT
* *** ** *
81195527 CTTAACCCCCTAAGCAGTAGGGAAACA-AATCGAAGGCGATGGAC
1 CTTAACCCCCTAAGCAGTAGGGAAACAGGAT-GAA-TTTACAGAT
*
81195571 CTTAACCCCCTAAGCAGTA-GGATAACAGGCTGAATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGA-AACAGGATGAATTTACAGAT
* *** **
81195614 CTTAACCCCCTAAGTAGTAGGGAAACA-GATCGAAGGCA-ATGGGC
1 CTTAACCCCCTAAGCAGTAGGGAAACAGGAT-GAATTTACA--GAT
* * *
81195658 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGGATGAATTTACAGAT
* * *
81195701 CTTAACCCCTTAAGCAGTAGAGAAACA-GATCGAA--GAC-GAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGGAT-GAATTTACAGAT
* * * *
81195741 AAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGAT
1 ----CTTAACCCCCTAAGCAGTAGGGAAACAGGATGAATTTACAGAT
81195788 C
1 C
81195789 CTAAACAGTA
Statistics
Matches: 448, Mismatches: 117, Indels: 86
0.69 0.18 0.13
Matches are distributed among these distances:
40 3 0.01
41 4 0.01
42 40 0.09
43 206 0.46
44 177 0.40
45 11 0.02
46 4 0.01
47 3 0.01
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (43 bp):
CTTAACCCCCTAAGCAGTAGGGAAACAGGATGAATTTACAGAT
Found at i:81195858 original size:45 final size:44
Alignment explanation
Indices: 81195788--81195973 Score: 171
Period size: 45 Copynumber: 4.2 Consensus size: 44
81195778 ATTTACAGAT
* *
81195788 CCTAAACAGTAGAGAAACAGATCGAAGGTGACAAGCCTTAAAAC
1 CCTAAGCAGTAGGGAAACAGATCGAAGGTGACAAGCCTTAAAAC
*
81195832 CCTTAAGCAGTAGGGAAACAGATCGAAGGTGACAAGCCTT-AACC
1 CC-TAAGCAGTAGGGAAACAGATCGAAGGTGACAAGCCTTAAAAC
* * * ** * ** *
81195876 CCTAAACAGTA-GGATAACAG-GCTAAATTTACAAATCTTAACAC
1 CCTAAGCAGTAGGGA-AACAGATCGAAGGTGACAAGCCTTAAAAC
** *** *
81195919 CCTAAGCAGTAGGGAAACAGATCGAAGACGATGGGCCTTAAACC
1 CCTAAGCAGTAGGGAAACAGATCGAAGGTGACAAGCCTTAAAAC
81195963 CCTAAGCAGTA
1 CCTAAGCAGTA
81195974 AGGTACCAAG
Statistics
Matches: 110, Mismatches: 27, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
42 14 0.13
43 30 0.27
44 31 0.28
45 35 0.32
ACGTcount: A:0.40, C:0.22, G:0.21, T:0.17
Consensus pattern (44 bp):
CCTAAGCAGTAGGGAAACAGATCGAAGGTGACAAGCCTTAAAAC
Found at i:81197145 original size:12 final size:12
Alignment explanation
Indices: 81197087--81197149 Score: 58
Period size: 12 Copynumber: 5.2 Consensus size: 12
81197077 TTTTATTTTT
* *
81197087 TTATTTTTACTA
1 TTATTTATATTA
81197099 TTATTTATATTA
1 TTATTTATATTA
*
81197111 TTA-TTAT-TTC
1 TTATTTATATTA
*
81197121 TCATGTATATATTA
1 TTAT-T-TATATTA
81197135 TTATTTATATTA
1 TTATTTATATTA
81197147 TTA
1 TTA
81197150 GATTATATAT
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
10 4 0.10
11 4 0.10
12 24 0.59
13 4 0.10
14 5 0.12
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (12 bp):
TTATTTATATTA
Found at i:81197407 original size:16 final size:17
Alignment explanation
Indices: 81197381--81197422 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
81197371 ATATATTAGT
* *
81197381 GTATATTTTTATGTATA
1 GTATATATTTATATATA
81197398 -TATATATTTATATATA
1 GTATATATTTATATATA
81197414 GTAT-TATTT
1 GTATATATTT
81197423 TTTATTACTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 19 0.86
17 3 0.14
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (17 bp):
GTATATATTTATATATA
Found at i:81202934 original size:29 final size:27
Alignment explanation
Indices: 81202916--81202985 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
81202906 ATATTAAGTC
81202916 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
81202943 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
81202971 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
81202986 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:81202979 original size:28 final size:28
Alignment explanation
Indices: 81202916--81203013 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
81202906 ATATTAAGTC
*
81202916 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
81202943 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
81202971 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
81203000 CGCACACTTAGTGC
1 CGCACACTTAGTGC
81203014 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:81205217 original size:24 final size:24
Alignment explanation
Indices: 81205185--81205231 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
81205175 GACTTTAATG
* *
81205185 TTTACTTTGGTACCTCAGTTTTTT
1 TTTAATTTGATACCTCAGTTTTTT
* *
81205209 TTTAATTTGATACTTTAGTTTTT
1 TTTAATTTGATACCTCAGTTTTT
81205232 CTTTGGCCCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.17, C:0.11, G:0.11, T:0.62
Consensus pattern (24 bp):
TTTAATTTGATACCTCAGTTTTTT
Found at i:81228246 original size:336 final size:337
Alignment explanation
Indices: 81227626--81228302 Score: 1230
Period size: 336 Copynumber: 2.0 Consensus size: 337
81227616 CCGGAAAAAA
* *
81227626 AACTAGTCAGTTAATAATAAATCAAGACCAGCGATAGGAGTTAATGAGGCCCATCGAAACATGAA
1 AACTAGTCAGTTAATAATAAACCAAGACCAGCGATAGGAGTTAATGAGGCCCATCAAAACATGAA
81227691 AGCAGGAAAAAGTAAGAAACATCCCTAAAGAATTACCATAGTTTGCTCATTATGAGTTCAACAGA
66 AGCAGGAAAAAGTAAGAAACATCCCTAAAGAATTACCATAGTTTGCTCATTATGAGTTCAACAGA
81227756 CCAGTTAAAAGTTGAGATCATTTCATTTACATAGTAAAAGAGAAGGTCCACTAATAAACCGAAAG
131 CCAGTTAAAAGTTGAGATCATTTCATTTACATAGTAAAAGAGAAGGTCCACTAATAAACCGAAAG
*
81227821 TAGTTTTCCTGTTGATTGTGGATTTACTTTACTTTTTTGCTAATATGACTTAGACATAAATATGA
196 TAGTTTTCCTGTTGATTGTGGATATACTTTACTTTTTTGCTAATATGACTTAGACATAAATATGA
*
81227886 TCTATACATACACACACATAAGCACCAAAGAATGACTGAATTCACCTTATCATGCAACTGTGTAC
261 TCTATACATACACACACATAAGCACCAAAGAATGACTGAATTCACCTTATCATGCAACTGTATAC
* *
81227951 CAAGGTATAAAT
326 CAAGATACAAAT
* **
81227963 AACTAG-CAGTTAATAATAAACCAAGACCAGCGATATGAGTTAATGAGGCCCATCAAAATGTGAA
1 AACTAGTCAGTTAATAATAAACCAAGACCAGCGATAGGAGTTAATGAGGCCCATCAAAACATGAA
*
81228027 AGCAGGAAAAAGTAAGAAACATCCCTAAAGTATTACCATAGTTTGCTCATTATGAGTTCAACAGA
66 AGCAGGAAAAAGTAAGAAACATCCCTAAAGAATTACCATAGTTTGCTCATTATGAGTTCAACAGA
* * *
81228092 CCAGTTAAGAGTTGAGATCATTTCATTTACATGGTAAAAGAGAAGGTCCACTAATAAACCGAACG
131 CCAGTTAAAAGTTGAGATCATTTCATTTACATAGTAAAAGAGAAGGTCCACTAATAAACCGAAAG
81228157 TAGTTTTCCTGTTGATTGTGGATATACTTTACTTTTTTGCTAATATGACTTAGACATAAATATGA
196 TAGTTTTCCTGTTGATTGTGGATATACTTTACTTTTTTGCTAATATGACTTAGACATAAATATGA
81228222 TCTATACATACACACACATAAGCACCAAAGAATGACTGAATTCACCTTATCATGCAACTGTATAC
261 TCTATACATACACACACATAAGCACCAAAGAATGACTGAATTCACCTTATCATGCAACTGTATAC
81228287 CAAGATACAAAT
326 CAAGATACAAAT
81228299 AACT
1 AACT
81228303 GATAGAAAAA
Statistics
Matches: 327, Mismatches: 13, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
336 321 0.98
337 6 0.02
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (337 bp):
AACTAGTCAGTTAATAATAAACCAAGACCAGCGATAGGAGTTAATGAGGCCCATCAAAACATGAA
AGCAGGAAAAAGTAAGAAACATCCCTAAAGAATTACCATAGTTTGCTCATTATGAGTTCAACAGA
CCAGTTAAAAGTTGAGATCATTTCATTTACATAGTAAAAGAGAAGGTCCACTAATAAACCGAAAG
TAGTTTTCCTGTTGATTGTGGATATACTTTACTTTTTTGCTAATATGACTTAGACATAAATATGA
TCTATACATACACACACATAAGCACCAAAGAATGACTGAATTCACCTTATCATGCAACTGTATAC
CAAGATACAAAT
Found at i:81231302 original size:15 final size:15
Alignment explanation
Indices: 81231267--81231307 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
81231257 TGATTATTTG
81231267 AGTTTATTAA-AAAT
1 AGTTTATTAATAAAT
* *
81231281 AGATTATTAATCAAT
1 AGTTTATTAATAAAT
81231296 AGTTTATTAATA
1 AGTTTATTAATA
81231308 TTAGAATAGG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.44
Consensus pattern (15 bp):
AGTTTATTAATAAAT
Found at i:81241522 original size:21 final size:22
Alignment explanation
Indices: 81241472--81241523 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 22
81241462 GAGAAAATGA
* *
81241472 AATGAATAAGTGATATGTTATGG
1 AATG-ATAAATGATATGTGATGG
*
81241495 AAT-ATAAATGA-ATGTGATGT
1 AATGATAAATGATATGTGATGG
81241515 AATGATAAA
1 AATGATAAA
81241524 AAACATAGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
20 10 0.40
21 12 0.48
23 3 0.12
ACGTcount: A:0.46, C:0.00, G:0.21, T:0.33
Consensus pattern (22 bp):
AATGATAAATGATATGTGATGG
Found at i:81243869 original size:37 final size:37
Alignment explanation
Indices: 81243828--81243976 Score: 158
Period size: 37 Copynumber: 4.1 Consensus size: 37
81243818 GGAGGATGTA
* ** *
81243828 TAGCTCGTATGAGCATTTGATGTGTTTTCGGTTGCAT
1 TAGCTCTTATGAGCATTTGGCGTGTTTTCGGTTGGAT
**
81243865 TAGCTCTTATGAGCATTTGGCGTGTTACCGGTTGGAT
1 TAGCTCTTATGAGCATTTGGCGTGTTTTCGGTTGGAT
* * *
81243902 TAGCTCTT-TGGACCACTTGGCATGTTTTCGGTTGGAT
1 TAGCTCTTAT-GAGCATTTGGCGTGTTTTCGGTTGGAT
** * *
81243939 TAGCTCTTATGAGTGTTTGGCATG-TTTCGGGTGGAT
1 TAGCTCTTATGAGCATTTGGCGTGTTTTCGGTTGGAT
81243975 TA
1 TA
81243977 CTTTTGTACC
Statistics
Matches: 94, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
36 14 0.15
37 79 0.84
38 1 0.01
ACGTcount: A:0.15, C:0.15, G:0.29, T:0.41
Consensus pattern (37 bp):
TAGCTCTTATGAGCATTTGGCGTGTTTTCGGTTGGAT
Found at i:81248230 original size:16 final size:18
Alignment explanation
Indices: 81248203--81248236 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
81248193 TAGAATTGGG
81248203 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
81248220 TTGAG-AAATTAATTTAA
1 TTGAGAAAATTAATTTAA
81248237 GATATTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.41
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:81249884 original size:17 final size:19
Alignment explanation
Indices: 81249864--81249901 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
81249854 CAGGGGAAGG
81249864 AAGAAAG-A-AAAAGAGAA
1 AAGAAAGAAGAAAAGAGAA
81249881 AAGAAAGAAGAAAAGAGAA
1 AAGAAAGAAGAAAAGAGAA
81249900 AA
1 AA
81249902 TTGAAGGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.37
18 1 0.05
19 11 0.58
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (19 bp):
AAGAAAGAAGAAAAGAGAA
Found at i:81251630 original size:23 final size:24
Alignment explanation
Indices: 81251592--81251639 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
81251582 TTATAAAAAT
81251592 ATAAAAATATTAATTT-AAATTAA
1 ATAAAAATATTAATTTAAAATTAA
81251615 ATAAAAA-ATTACATTTCAAAATTAA
1 ATAAAAATATTA-ATTT-AAAATTAA
81251640 TGTTTTTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 4 0.18
23 11 0.50
25 7 0.32
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.35
Consensus pattern (24 bp):
ATAAAAATATTAATTTAAAATTAA
Found at i:81256629 original size:26 final size:25
Alignment explanation
Indices: 81256591--81256649 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 25
81256581 ATTAAATTAT
*
81256591 ATATTTTTGTTAAATTATATTTAATA
1 ATATTATT-TTAAATTATATTTAATA
*
81256617 ATAATTATTTTAAATTATATTTTATA
1 AT-ATTATTTTAAATTATATTTAATA
81256643 ATATTAT
1 ATATTAT
81256650 ATATTATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 5 0.17
26 20 0.67
27 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (25 bp):
ATATTATTTTAAATTATATTTAATA
Found at i:81256648 original size:15 final size:15
Alignment explanation
Indices: 81256604--81256659 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
81256594 TTTTTGTTAA
*
81256604 ATTATATTTAATAAT
1 ATTATATTTTATAAT
*
81256619 AAT-TA-TTT-TAA-
1 ATTATATTTTATAAT
81256630 ATTATATTTTATAAT
1 ATTATATTTTATAAT
*
81256645 ATTATATATTATAAT
1 ATTATATTTTATAAT
81256660 TTTAATAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
11 2 0.06
12 5 0.15
13 5 0.15
14 5 0.15
15 16 0.48
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTATATTTTATAAT
Found at i:81256675 original size:24 final size:22
Alignment explanation
Indices: 81256630--81256698 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 22
81256620 ATTATTTTAA
81256630 ATTATATTTTATAATATTATAT
1 ATTATATTTTATAATATTATAT
* *
81256652 ATTATAATTT-TAATA-AAT-T
1 ATTATATTTTATAATATTATAT
81256671 CA-TATATTTTATCAA-ATTATAT
1 -ATTATATTTTAT-AATATTATAT
81256693 ATTATA
1 ATTATA
81256699 AAAAAAATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 12
0.70 0.08 0.23
Matches are distributed among these distances:
19 8 0.22
20 5 0.14
21 10 0.27
22 14 0.38
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (22 bp):
ATTATATTTTATAATATTATAT
Found at i:81256694 original size:17 final size:17
Alignment explanation
Indices: 81256576--81256717 Score: 61
Period size: 17 Copynumber: 8.6 Consensus size: 17
81256566 AATACTAAGA
*
81256576 ATTTTATTAAATTATAT
1 ATTTTAATAAATTATAT
**
81256593 ATTTTTGTTAAA-T-TAT
1 A-TTTTAATAAATTATAT
*
81256609 A-TTTAAT-AATAAT-T
1 ATTTTAATAAATTATAT
* *
81256623 ATTTTAAATTATATTTTAT
1 ATTTT-AA-TAAATTATAT
* *
81256642 AATATT-ATATATTATA-
1 -ATTTTAATAAATTATAT
81256658 ATTTTAATAAATTCATAT
1 ATTTTAATAAATT-ATAT
81256676 ATTTT-ATCAAATTATAT
1 ATTTTAAT-AAATTATAT
* **
81256693 ATTATAA-AAAAAATAT
1 ATTTTAATAAATTATAT
81256709 A-TTTAATAA
1 ATTTTAATAA
81256718 TAATTATGTT
Statistics
Matches: 95, Mismatches: 15, Indels: 31
0.67 0.11 0.22
Matches are distributed among these distances:
13 2 0.02
14 6 0.06
15 12 0.13
16 22 0.23
17 24 0.25
18 24 0.25
19 1 0.01
20 4 0.04
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (17 bp):
ATTTTAATAAATTATAT
Found at i:81256966 original size:16 final size:16
Alignment explanation
Indices: 81256945--81257012 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
81256935 GATTTGCTAT
81256945 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
* *
81256961 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
81256977 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
81256993 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
81257009 TACA
1 TACA
81257013 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:81258009 original size:71 final size:71
Alignment explanation
Indices: 81257934--81258071 Score: 276
Period size: 71 Copynumber: 1.9 Consensus size: 71
81257924 TTGTATGTTC
81257934 AATGTTTAAATATTTAATTACAATATTAACTTTGAGATAATTTTTTATGATTATATTTTAATAAA
1 AATGTTTAAATATTTAATTACAATATTAACTTTGAGATAATTTTTTATGATTATATTTTAATAAA
81257999 TTGATA
66 TTGATA
81258005 AATGTTTAAATATTTAATTACAATATTAACTTTGAGATAATTTTTTATGATTATATTTTAATAAA
1 AATGTTTAAATATTTAATTACAATATTAACTTTGAGATAATTTTTTATGATTATATTTTAATAAA
81258070 TT
66 TT
81258072 TCTTTCTCAT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 67 1.00
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.50
Consensus pattern (71 bp):
AATGTTTAAATATTTAATTACAATATTAACTTTGAGATAATTTTTTATGATTATATTTTAATAAA
TTGATA
Found at i:81266186 original size:25 final size:25
Alignment explanation
Indices: 81266147--81266194 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
81266137 CCTCCCCGGG
81266147 TTTTCTTTTTCTTCTTTTTCAAAGT
1 TTTTCTTTTTCTTCTTTTTCAAAGT
81266172 TTTTCTTTATT-TTCTTTTTCAAA
1 TTTTCTTT-TTCTTCTTTTTCAAA
81266195 ACGGGTTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.15, C:0.15, G:0.02, T:0.69
Consensus pattern (25 bp):
TTTTCTTTTTCTTCTTTTTCAAAGT
Found at i:81274706 original size:30 final size:30
Alignment explanation
Indices: 81274629--81274706 Score: 102
Period size: 30 Copynumber: 2.6 Consensus size: 30
81274619 TGTAACCTCA
* * *
81274629 ATATAATGTCAGCTTTTATGAGCAATATTG
1 ATATAATGTCAGCTTGTGTGAGCAACATTG
* *
81274659 TTATAATGTCAGCTTGTGTGAGCAACCTTG
1 ATATAATGTCAGCTTGTGTGAGCAACATTG
*
81274689 ATATATTGTCAGCTTGTG
1 ATATAATGTCAGCTTGTG
81274707 CAAGCAACTT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.40
Consensus pattern (30 bp):
ATATAATGTCAGCTTGTGTGAGCAACATTG
Found at i:81284060 original size:542 final size:542
Alignment explanation
Indices: 81283032--81284118 Score: 2120
Period size: 542 Copynumber: 2.0 Consensus size: 542
81283022 AATGGAGGGG
*
81283032 CCAATTGGAGATATGTGATAATTAAGTTTCAGTTTTTTGCCTATTAATTGTAAACTCATTTAGTC
1 CCAATTGGAGATATGTGATAATTAAGTTTCAGTTTTTTACCTATTAATTGTAAACTCATTTAGTC
81283097 ACAAAGTCGTTCCACTATAGTATCGCGACTGGACTCTCCCCAACTACATACCATTGGGAAATCGA
66 ACAAAGTCGTTCCACTATAGTATCGCGACTGGACTCTCCCCAACTACATACCATTGGGAAATCGA
81283162 CTACTTACTGCTCATCCAATGACCTTGTCATAAGTGTGTTACCCTGATAGGATCACATAGGATAT
131 CTACTTACTGCTCATCCAATGACCTTGTCATAAGTGTGTTACCCTGATAGGATCACATAGGATAT
81283227 CCTTTATCTCTTTGGGATAATATTCGTTCTCCCAATATTATCCTATTTTATCTCATGGTAACCAT
196 CCTTTATCTCTTTGGGATAATATTCGTTCTCCCAATATTATCCTATTTTATCTCATGGTAACCAT
81283292 TATATCTTCCTTCATGAAAACTCAACCACTATCAAATAGTGATCAAGTCAACCATAAAAAAGACG
261 TATATCTTCCTTCATGAAAACTCAACCACTATCAAATAGTGATCAAGTCAACCATAAAAAAGACG
81283357 GACGACCCGAGGTCAAGTTTACTTTTCATCAATCATGTAAAGCCAATGAGAGGATATCATTTACC
326 GACGACCCGAGGTCAAGTTTACTTTTCATCAATCATGTAAAGCCAATGAGAGGATATCATTTACC
81283422 TATGTTTTTGGATATGAATTTTACTGTTGTGAATGATGCTACATACTGCAAAATTCATATACCTA
391 TATGTTTTTGGATATGAATTTTACTGTTGTGAATGATGCTACATACTGCAAAATTCATATACCTA
* * *
81283487 ACGCACTAACTTTCGGTTCTTTATCTATTTTAACTTAGGTTTTTACTTACATCAAAGTGTATGAG
456 ACGCACTAACTTTCGGTTCCTTATCTATTTTAACTCAGGCTTTTACTTACATCAAAGTGTATGAG
81283552 ACACGCATATATTGTTCGCCAT
521 ACACGCATATATTGTTCGCCAT
81283574 CCAATTGGAGATATGTGATAATTAAGTTTCAGTTTTTTACCTATTAATTGTAAACTCATTTAGTC
1 CCAATTGGAGATATGTGATAATTAAGTTTCAGTTTTTTACCTATTAATTGTAAACTCATTTAGTC
*
81283639 ACAAAGTCGTTCTACTATAGTATCGCGACTGGACTCTCCCCAACTACATACCATTGGGAAATCGA
66 ACAAAGTCGTTCCACTATAGTATCGCGACTGGACTCTCCCCAACTACATACCATTGGGAAATCGA
81283704 CTACTTACTGCTCATCCAATGACCTTGTCATAAGTGTGTTACCCTGATAGGATCACATAGGATAT
131 CTACTTACTGCTCATCCAATGACCTTGTCATAAGTGTGTTACCCTGATAGGATCACATAGGATAT
81283769 CCTTTATCTCTTTGGGATAATATTCGTTCTCCCAATATTATCCTATTTTATCTCATGGTAACCAT
196 CCTTTATCTCTTTGGGATAATATTCGTTCTCCCAATATTATCCTATTTTATCTCATGGTAACCAT
81283834 TATATCTTCCTTCATGAAAACTCAACCACTATCAAATAGTGATCAAGTCAACCATAAAAAAGACG
261 TATATCTTCCTTCATGAAAACTCAACCACTATCAAATAGTGATCAAGTCAACCATAAAAAAGACG
81283899 GACGACCCGAGGTCAAGTTTACTTTTCATCAATCATGTAAAGCCAATGAGAGGATATCATTTACC
326 GACGACCCGAGGTCAAGTTTACTTTTCATCAATCATGTAAAGCCAATGAGAGGATATCATTTACC
81283964 TATGTTTTTGGATATGAATTTTACTGTTGTGAATGATGCTACATACTGCAAAATTCATATACCTA
391 TATGTTTTTGGATATGAATTTTACTGTTGTGAATGATGCTACATACTGCAAAATTCATATACCTA
*
81284029 ACGCACTAACTTTCGGTTCCTTATTTATTTTAACTCAGGCTTTTACTTACATCAAAGTGTATGAG
456 ACGCACTAACTTTCGGTTCCTTATCTATTTTAACTCAGGCTTTTACTTACATCAAAGTGTATGAG
81284094 ACACGCATATATTGTTCGCCAT
521 ACACGCATATATTGTTCGCCAT
81284116 CCA
1 CCA
81284119 CTCAGGATTT
Statistics
Matches: 539, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
542 539 1.00
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (542 bp):
CCAATTGGAGATATGTGATAATTAAGTTTCAGTTTTTTACCTATTAATTGTAAACTCATTTAGTC
ACAAAGTCGTTCCACTATAGTATCGCGACTGGACTCTCCCCAACTACATACCATTGGGAAATCGA
CTACTTACTGCTCATCCAATGACCTTGTCATAAGTGTGTTACCCTGATAGGATCACATAGGATAT
CCTTTATCTCTTTGGGATAATATTCGTTCTCCCAATATTATCCTATTTTATCTCATGGTAACCAT
TATATCTTCCTTCATGAAAACTCAACCACTATCAAATAGTGATCAAGTCAACCATAAAAAAGACG
GACGACCCGAGGTCAAGTTTACTTTTCATCAATCATGTAAAGCCAATGAGAGGATATCATTTACC
TATGTTTTTGGATATGAATTTTACTGTTGTGAATGATGCTACATACTGCAAAATTCATATACCTA
ACGCACTAACTTTCGGTTCCTTATCTATTTTAACTCAGGCTTTTACTTACATCAAAGTGTATGAG
ACACGCATATATTGTTCGCCAT
Found at i:81285695 original size:17 final size:16
Alignment explanation
Indices: 81285669--81285716 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 16
81285659 TTAGAATTGG
*
81285669 ATTGAGAAAATTATTT
1 ATTGAAAAAATTATTT
81285685 AATTGAAAAAATTAATTT
1 -ATTGAAAAAATT-ATTT
*
81285703 ATTAAAAATAATTA
1 ATTGAAAA-AATTA
81285717 ATAAATAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 19 0.70
18 8 0.30
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (16 bp):
ATTGAAAAAATTATTT
Found at i:81285715 original size:18 final size:18
Alignment explanation
Indices: 81285675--81285718 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
81285665 TTGGATTGAG
*
81285675 AAAATT-ATTTAATTGAA
1 AAAATTAATTTAATTAAA
81285692 AAAATTAATTT-ATTAAA
1 AAAATTAATTTAATTAAA
81285709 AATAATTAAT
1 AA-AATTAAT
81285719 AAATAATATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 13 0.54
18 11 0.46
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (18 bp):
AAAATTAATTTAATTAAA
Found at i:81286371 original size:18 final size:18
Alignment explanation
Indices: 81286350--81286384 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
81286340 TTTTAATTTT
81286350 TAAAAAGAAATTAAATAA
1 TAAAAAGAAATTAAATAA
**
81286368 TAAACCGAAATTAAATA
1 TAAAAAGAAATTAAATA
81286385 CTCCATTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.66, C:0.06, G:0.06, T:0.23
Consensus pattern (18 bp):
TAAAAAGAAATTAAATAA
Found at i:81291170 original size:23 final size:22
Alignment explanation
Indices: 81291119--81291170 Score: 52
Period size: 23 Copynumber: 2.3 Consensus size: 22
81291109 AATGTATGGT
81291119 ATGTATAATTACATGTGTAATA
1 ATGTATAATTACATGTGTAATA
* *
81291141 TTAGTATACA-TACATTTGTAATA
1 AT-GTATA-ATTACATGTGTAATA
81291164 CATGTAT
1 -ATGTAT
81291171 GTTTACTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
22 1 0.04
23 21 0.88
24 2 0.08
ACGTcount: A:0.38, C:0.08, G:0.12, T:0.42
Consensus pattern (22 bp):
ATGTATAATTACATGTGTAATA
Found at i:81291207 original size:11 final size:12
Alignment explanation
Indices: 81291177--81291210 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
81291167 GTATGTTTAC
81291177 TTATTATATAAG
1 TTATTATATAAG
81291189 TATATTAT-TAAG
1 T-TATTATATAAG
81291201 TTATTATATA
1 TTATTATATA
81291211 TATATAAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 6 0.30
12 8 0.40
13 6 0.30
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (12 bp):
TTATTATATAAG
Found at i:81292117 original size:15 final size:16
Alignment explanation
Indices: 81292097--81292139 Score: 63
Period size: 15 Copynumber: 2.8 Consensus size: 16
81292087 TAATGAATTT
81292097 ATTGAATTTATATTG-
1 ATTGAATTTATATTGA
*
81292112 ATTGAATTGA-ATTGA
1 ATTGAATTTATATTGA
81292127 ATTGAATTTATAT
1 ATTGAATTTATAT
81292140 GATATATGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 4 0.17
15 18 0.75
16 2 0.08
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (16 bp):
ATTGAATTTATATTGA
Found at i:81292122 original size:5 final size:5
Alignment explanation
Indices: 81292097--81292134 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
81292087 TAATGAATTT
*
81292097 ATTGA ATTTA TATTG- ATTGA ATTGA ATTGA ATTGA ATT
1 ATTGA ATTGA -ATTGA ATTGA ATTGA ATTGA ATTGA ATT
81292135 TATATGATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
4 4 0.14
5 22 0.76
6 3 0.10
ACGTcount: A:0.37, C:0.00, G:0.16, T:0.47
Consensus pattern (5 bp):
ATTGA
Found at i:81292527 original size:38 final size:39
Alignment explanation
Indices: 81292467--81292561 Score: 104
Period size: 39 Copynumber: 2.5 Consensus size: 39
81292457 CAGATAGATT
* ** *
81292467 CGATGAGGTACTGGGTACCAACT-TTACTTCG-GCTAGGC
1 CGATGAGGCACTGGGTGTCAACTATTACTTCGAACTA-GC
* * *
81292505 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGTCAACTATTACTTCGAACTAGC
81292544 CGATGAGGCACTGGGTGT
1 CGATGAGGCACTGGGTGT
81292562 AACACCCCGT
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
38 19 0.40
39 25 0.53
40 3 0.06
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGTCAACTATTACTTCGAACTAGC
Found at i:81294127 original size:119 final size:120
Alignment explanation
Indices: 81293951--81294173 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
81293941 TACTCGTTCA
* * *
81293951 AATGCCTTTGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
*
81294016 ATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* *
81294071 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
* * * *
81294133 ATATGGTCACTTAGCACAAAGCCTTTGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
81294174 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 67 0.74
120 19 0.21
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:81294173 original size:40 final size:40
Alignment explanation
Indices: 81293930--81294173 Score: 291
Period size: 40 Copynumber: 6.1 Consensus size: 40
81293920 CGGAATTTAA
** * *
81293930 CCGGATATAGCT-ACTCGTTCAAATGCCTTTGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
81293970 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
81294010 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
81294050 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
81294089 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * * *
81294129 CCGGATATGGTCACTTAGCACAAA-GCCTTTGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
81294169 CCGGA
1 CCGGA
81294174 CATCATTCAA
Statistics
Matches: 179, Mismatches: 18, Indels: 14
0.85 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 33 0.18
40 132 0.74
41 12 0.07
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:81296040 original size:18 final size:19
Alignment explanation
Indices: 81296019--81296059 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
81296009 AATGAAATGA
81296019 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
81296037 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
81296056 GAAA
1 GAAA
81296060 CATGAACCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:81302048 original size:13 final size:13
Alignment explanation
Indices: 81302030--81302054 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81302020 GGGCCTACAT
81302030 GGGTAAACCACAC
1 GGGTAAACCACAC
81302043 GGGTAAACCACA
1 GGGTAAACCACA
81302055 TGGGCGTGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.28, G:0.24, T:0.08
Consensus pattern (13 bp):
GGGTAAACCACAC
Found at i:81308091 original size:29 final size:28
Alignment explanation
Indices: 81308051--81308106 Score: 85
Period size: 29 Copynumber: 2.0 Consensus size: 28
81308041 TACTTTATCA
*
81308051 AATTTTTCAATATGGTACTTATACTTTC
1 AATTTTTCAATATGGTACATATACTTTC
*
81308079 AATTTGTTTAATATGGTACATATACTTT
1 AATTT-TTCAATATGGTACATATACTTT
81308107 TCTATTTATC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.20
29 20 0.80
ACGTcount: A:0.30, C:0.11, G:0.09, T:0.50
Consensus pattern (28 bp):
AATTTTTCAATATGGTACATATACTTTC
Found at i:81313012 original size:13 final size:14
Alignment explanation
Indices: 81312996--81313035 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
81312986 CAATCTCATA
81312996 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
81313009 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
81313022 TCTC-ATTTC-ATT
1 TCTCAATTTCAATT
81313034 TC
1 TC
81313036 AATAGCTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 11 0.44
13 14 0.56
ACGTcount: A:0.25, C:0.25, G:0.00, T:0.50
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:81314512 original size:13 final size:12
Alignment explanation
Indices: 81314480--81314513 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
81314470 CTTTTATATA
81314480 TATATAATAACT
1 TATATAATAACT
81314492 TA-ATAATATACT
1 TATATAATA-ACT
81314504 TATATAATAA
1 TATATAATAA
81314514 GTAAACATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 6 0.30
12 8 0.40
13 6 0.30
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (12 bp):
TATATAATAACT
Found at i:81328884 original size:46 final size:45
Alignment explanation
Indices: 81328816--81328945 Score: 206
Period size: 46 Copynumber: 2.8 Consensus size: 45
81328806 GAAATTACAG
81328816 ATCCTATACTCCTGAGACGCAGTGGGATGGATTGAAGAAAATGAAA
1 ATCCTATAC-CCTGAGACGCAGTGGGATGGATTGAAGAAAATGAAA
* * *
81328862 ATCCTATACCCTTGAGATGCAGTGGGATGGATTGAAGAAAATGCAG
1 ATCCTATACCC-TGAGACGCAGTGGGATGGATTGAAGAAAATGAAA
81328908 ATCCTATACCCCTGAGACGCAGTGGGATGGATTGAAGA
1 ATCCTATA-CCCTGAGACGCAGTGGGATGGATTGAAGA
81328946 GGATTACAGA
Statistics
Matches: 78, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
45 2 0.03
46 73 0.94
47 3 0.04
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (45 bp):
ATCCTATACCCTGAGACGCAGTGGGATGGATTGAAGAAAATGAAA
Found at i:81329165 original size:132 final size:131
Alignment explanation
Indices: 81328947--81329404 Score: 562
Period size: 132 Copynumber: 3.5 Consensus size: 131
81328937 GATTGAAGAG
* * * * *
81328947 GATTACAGATCGTATCTCCCTAAGCAGTACTAGAGTAGATCGAAGACGGCGAATCTTATCTTCCC
1 GATTACAGATCTTATCTCCCTAAGAAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCT
* * * *
81329012 AAGGTAGTAGGGAAGCTGATTTAAGCCACTAGCCTTATCTCTCTGAGCAGTAGTGGAGCAAGCTA
66 GAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCTTATCTC-CTGAGCAGCAGTGGAGCAAGCTG
81329077 AA
130 AA
* **
81329079 GATTACAGATCTTATCTCTCTAAGAAGTAGTAGAGCAGATCGAAGACGATGAATCTTATCTTCCT
1 GATTACAGATCTTATCTCCCTAAGAAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCT
* *
81329144 GAGGTAGTAGGGAAGCAGATTTAAGCTACTAGCCTTATCTGCCTGAGCAGCAGTGGAGCAGGCTG
66 GAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCTTATCT-CCTGAGCAGCAGTGGAGCAAGCTG
81329209 AA
130 AA
* * * * * * *
81329211 GATTGCAGATTTTATCTCCCTAAGCAGTAGTGGAACAGATCGAGGACGGCGAATCTTATCTT-TT
1 GATTACAGATCTTATCTCCCTAAGAAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCT
* * *
81329275 CGAGGTAGTAGGGAAGCAGATTTAAGCCACTGGCTTTATCTCCCTGAGTAGCAGTGGAG-AAGGC
66 -GAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCTTATCT-CCTGAGCAGCAGTGGAGCAA-GC
81329339 TGAA
128 TGAA
** * * * *
81329343 GATTGTAGATCTTATCTTCCTAAAAAAGTAGT-GAAGTAGATCAAAGACGGCGAATCTTATCT
1 GATTACAGATCTTATCTCCCT-AAGAAGTAGTAG-AGCAGATCGAAGACGGCGAATCTTATCT
81329405 CCATGAAGCA
Statistics
Matches: 282, Mismatches: 39, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
131 2 0.01
132 247 0.88
133 33 0.12
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (131 bp):
GATTACAGATCTTATCTCCCTAAGAAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCT
GAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCTTATCTCCTGAGCAGCAGTGGAGCAAGCTGA
A
Found at i:81329567 original size:89 final size:89
Alignment explanation
Indices: 81329380--81329559 Score: 207
Period size: 89 Copynumber: 2.0 Consensus size: 89
81329370 GTAGTGAAGT
* * *
81329380 AGATCAAAGACGGCGAATCTTATCTCCATGAAGCAGCAATGAAACAGATTTAGGCCACCAGCCTC
1 AGATCGAAGACGGCGAATCTTATCTCCATGAAGCAGAAATGAAACAGATTTAAGCCACCAGCCTC
** * *
81329445 ATCTCCCTAAAGTAGCAGTGGGGT
66 ATCTCCCTAAAGTAGCAAAGGAGC
* * * * * * *
81329469 AGATCGAAGACGGTGAATCTTATTTTCATGTAGCGGAAATGAAGCAGATTTAAGCCACCAGCCTT
1 AGATCGAAGACGGCGAATCTTATCTCCATGAAGCAGAAATGAAACAGATTTAAGCCACCAGCCTC
* * *
81329534 ATCTCCTTGAGGTAGCAAAGGAGC
66 ATCTCCCTAAAGTAGCAAAGGAGC
81329558 AG
1 AG
81329560 GTTGAAGATA
Statistics
Matches: 74, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
89 74 1.00
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (89 bp):
AGATCGAAGACGGCGAATCTTATCTCCATGAAGCAGAAATGAAACAGATTTAAGCCACCAGCCTC
ATCTCCCTAAAGTAGCAAAGGAGC
Found at i:81329757 original size:179 final size:180
Alignment explanation
Indices: 81329553--81329924 Score: 525
Period size: 179 Copynumber: 2.1 Consensus size: 180
81329543 AGGTAGCAAA
* * *
81329553 GGAGCAGGTTGAAGATAGTAGGTCTTATCTCCCTAAAGTTGCAGT-GAAGCAGACTGAAGATAGC
1 GGAGCAGGTTGAAGATAGCAGGTCTTATCTCCATAAAGTTGCAGTAG-AGCAGAATGAAGATAGC
* * *
81329617 AGATCTTATCTCCCTGAAGTTGCAGT-GCAGCAGACTGAAGATAACAAACCTCATCTCTCTAAAG
65 AAATCTTATCTCCCTGAAGTTGCAGTAG-AACAGACTGAAGATAACAAACCTCATCTATCTAAAG
* ** * *
81329681 TTGCAGTAGAGCAG-GTTGAAGTAGCAAGTCTTATCTCCCTGAAGTTGCAGT
129 TTGCAGTAGAGCAGACTAAAAATAACAAGTCTTATCTCCCTGAAGTTGCAGT
* *
81329732 GGAGCAGGCTGAAGATAGCAGGTCTTATCTCCATGAAGTTGCAGTAGAGCAGAATGAAGATAGCA
1 GGAGCAGGTTGAAGATAGCAGGTCTTATCTCCATAAAGTTGCAGTAGAGCAGAATGAAGATAGCA
* * *
81329797 AATCTTATCTTCCTGAAGTTGCAGTAGAATAGATTGAAGATAACAAACCTCATCTATCTAAAGTT
66 AATCTTATCTCCCTGAAGTTGCAGTAGAACAGACTGAAGATAACAAACCTCATCTATCTAAAGTT
* * *
81329862 GCAGTGGAGCAGACTAAAAATAACAGGTTTTATCTCCCTGAAGTTGCAGT
131 GCAGTAGAGCAGACTAAAAATAACAAGTCTTATCTCCCTGAAGTTGCAGT
*
81329912 GGAGTAGGTTGAA
1 GGAGCAGGTTGAA
81329925 ATTTAGGTTG
Statistics
Matches: 169, Mismatches: 21, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
179 126 0.75
180 43 0.25
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.26
Consensus pattern (180 bp):
GGAGCAGGTTGAAGATAGCAGGTCTTATCTCCATAAAGTTGCAGTAGAGCAGAATGAAGATAGCA
AATCTTATCTCCCTGAAGTTGCAGTAGAACAGACTGAAGATAACAAACCTCATCTATCTAAAGTT
GCAGTAGAGCAGACTAAAAATAACAAGTCTTATCTCCCTGAAGTTGCAGT
Found at i:81329913 original size:45 final size:45
Alignment explanation
Indices: 81329575--81329915 Score: 351
Period size: 45 Copynumber: 7.6 Consensus size: 45
81329565 AGATAGTAGG
* * *
81329575 TCTTATCTCCCTAAAGTTGCAGTGAAGCAGACTGAAGATAGCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAA
* *
81329620 TCTTATCTCCCTGAAGTTGCAGTGCAGCAGACTGAAGATAACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAA
* * * * * ** *
81329665 CCTCATCTCTCTAAAGTTGCAGTAGAGCAGGTTGAAG-TAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAA
* **
81329709 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTGAAGATAGCAGG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAA
* * *
81329754 TCTTATCTCCATGAAGTTGCAGTAGAGCAGAATGAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAA
* * ** * *
81329799 TCTTATCTTCCTGAAGTTGCAGTAGAATAGATTGAAGATAACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAA
* * ** * * * * **
81329844 CCTCATCTATCTAAAGTTGCAGTGGAGCAGACTAAAAATAACAGG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAA
*
81329889 TTTTATCTCCCTGAAGTTGCAGTGGAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAG
81329916 TAGGTTGAAA
Statistics
Matches: 243, Mismatches: 52, Indels: 2
0.82 0.18 0.01
Matches are distributed among these distances:
44 36 0.15
45 207 0.85
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAA
Found at i:81330947 original size:29 final size:29
Alignment explanation
Indices: 81330910--81331020 Score: 82
Period size: 29 Copynumber: 3.8 Consensus size: 29
81330900 ATATTATTGC
* *
81330910 TATTATTATTATGTTTCTATTTATATTTA
1 TATTGTTATTATATTTCTATTTATATTTA
* * * *
81330939 TTTTGTTATTCTAATACTA-TTATTATTTA
1 TATTGTTATTATATTTCTATTTA-TATTTA
* ** * *
81330968 TCTAATTTTTAT-TTATCTATTTATATTTC
1 TATTGTTATTATATT-TCTATTTATATTTA
*
81330997 TACTGTTATTATATTTCTATTTAT
1 TATTGTTATTATATTTCTATTTAT
81331021 TATATTTCTA
Statistics
Matches: 59, Mismatches: 19, Indels: 8
0.69 0.22 0.09
Matches are distributed among these distances:
28 4 0.07
29 50 0.85
30 5 0.08
ACGTcount: A:0.26, C:0.07, G:0.03, T:0.64
Consensus pattern (29 bp):
TATTGTTATTATATTTCTATTTATATTTA
Found at i:81330981 original size:15 final size:14
Alignment explanation
Indices: 81330925--81331041 Score: 62
Period size: 15 Copynumber: 8.1 Consensus size: 14
81330915 TTATTATGTT
*
81330925 TCTATTTATATTTA
1 TCTATTTTTATTTA
*
81330939 T-T-TTGTTATTCTAA
1 TCTATTTTTATT-T-A
*
81330953 TACTATTATTATTTA
1 T-CTATTTTTATTTA
81330968 TCTAATTTTTATTTA
1 TCT-ATTTTTATTTA
* *
81330983 TCTATTTATATTTC
1 TCTATTTTTATTTA
* *
81330997 TACTGTTATTATATT-
1 T-CTATTTTTAT-TTA
81331012 TCTATTTATTATATT-
1 TCTATTT-TTAT-TTA
*
81331027 TCTATTTCTATTTA
1 TCTATTTTTATTTA
81331041 T
1 T
81331042 ATACTAATAT
Statistics
Matches: 81, Mismatches: 12, Indels: 20
0.72 0.11 0.18
Matches are distributed among these distances:
12 6 0.07
13 4 0.05
14 23 0.28
15 37 0.46
16 4 0.05
17 7 0.09
ACGTcount: A:0.26, C:0.09, G:0.02, T:0.64
Consensus pattern (14 bp):
TCTATTTTTATTTA
Found at i:81331004 original size:58 final size:58
Alignment explanation
Indices: 81330925--81331041 Score: 139
Period size: 58 Copynumber: 2.0 Consensus size: 58
81330915 TTATTATGTT
** * *
81330925 TCTATTTATATTTATTTTGTTATTCTAATACTA-TTATTAT-TTATCTAATTTTTATTTA
1 TCTATTTATATTTATACTGTTATTATAATACTATTTATTATATT-TCT-ATTTCTATTTA
* * *
81330983 TCTATTTATATTTCTACTGTTATTATATTTCTATTTATTATATTTCTATTTCTATTTA
1 TCTATTTATATTTATACTGTTATTATAATACTATTTATTATATTTCTATTTCTATTTA
81331041 T
1 T
81331042 ATACTAATAT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
58 38 0.76
59 10 0.20
60 2 0.04
ACGTcount: A:0.26, C:0.09, G:0.02, T:0.64
Consensus pattern (58 bp):
TCTATTTATATTTATACTGTTATTATAATACTATTTATTATATTTCTATTTCTATTTA
Found at i:81331006 original size:44 final size:44
Alignment explanation
Indices: 81330953--81331072 Score: 108
Period size: 44 Copynumber: 2.8 Consensus size: 44
81330943 GTTATTCTAA
81330953 TACTATTATTAT-TTATCTAATTT-TTAT-TTATCTATTTATATTTC
1 TACTATTATTATATT-TCT-ATTTATTATATT-TCTATTTATATTTC
* * *
81330997 TACTGTTATTATATTTCTATTTATTATATTTCTATTTCTATTTATA
1 TACTATTATTATATTTCTATTTATTATATTTCTATTTATA-TT-TC
* *
81331043 TACTAATATTAT-TTTC-A-TTATTATTTTTCT
1 TACTATTATTATATTTCTATTTATTATATTTCT
81331073 TATATATGTT
Statistics
Matches: 65, Mismatches: 6, Indels: 11
0.79 0.07 0.13
Matches are distributed among these distances:
43 16 0.25
44 28 0.43
45 10 0.15
46 11 0.17
ACGTcount: A:0.27, C:0.09, G:0.01, T:0.63
Consensus pattern (44 bp):
TACTATTATTATATTTCTATTTATTATATTTCTATTTATATTTC
Found at i:81331010 original size:17 final size:15
Alignment explanation
Indices: 81330988--81331033 Score: 74
Period size: 15 Copynumber: 2.9 Consensus size: 15
81330978 ATTTATCTAT
81330988 TTATATTTCTACTGTTA
1 TTATATTTCTA-T-TTA
81331005 TTATATTTCTATTTA
1 TTATATTTCTATTTA
81331020 TTATATTTCTATTT
1 TTATATTTCTATTT
81331034 CTATTTATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
15 17 0.59
16 1 0.03
17 11 0.38
ACGTcount: A:0.24, C:0.09, G:0.02, T:0.65
Consensus pattern (15 bp):
TTATATTTCTATTTA
Found at i:81335657 original size:13 final size:12
Alignment explanation
Indices: 81335636--81335680 Score: 56
Period size: 12 Copynumber: 3.6 Consensus size: 12
81335626 AAAAATATAA
81335636 TTTTTATAAATT
1 TTTTTATAAATT
81335648 TTTTTAATAAATT
1 TTTTT-ATAAATT
81335661 TTGTTTAT-AATT
1 TT-TTTATAAATT
81335673 TTTATTAT
1 TTT-TTAT
81335681 TTTTAAAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
11 1 0.03
12 15 0.50
13 11 0.37
14 3 0.10
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (12 bp):
TTTTTATAAATT
Found at i:81336566 original size:11 final size:11
Alignment explanation
Indices: 81336552--81336671 Score: 96
Period size: 11 Copynumber: 10.8 Consensus size: 11
81336542 AAGTAGCAGT
*
81336552 AAAATAGCACC
1 AAAACAGCACC
*
81336563 AAAACAGCATC
1 AAAACAGCACC
*
81336574 AAAACAACACC
1 AAAACAGCACC
* * *
81336585 AAAATACCATC
1 AAAACAGCACC
*
81336596 AAAACAGCACA
1 AAAACAGCACC
* * **
81336607 AAAATACCTTC
1 AAAACAGCACC
81336618 AAAACAGCACC
1 AAAACAGCACC
81336629 AAAACAGCACC
1 AAAACAGCACC
* * *
81336640 CAAACAGTAAC
1 AAAACAGCACC
*
81336651 AAAACAGCACAA
1 AAAACAGCAC-C
81336663 AAAACAGCA
1 AAAACAGCA
81336672 TCACCAACAA
Statistics
Matches: 81, Mismatches: 27, Indels: 1
0.74 0.25 0.01
Matches are distributed among these distances:
11 72 0.89
12 9 0.11
ACGTcount: A:0.57, C:0.29, G:0.07, T:0.07
Consensus pattern (11 bp):
AAAACAGCACC
Found at i:81336577 original size:22 final size:22
Alignment explanation
Indices: 81336552--81336664 Score: 111
Period size: 22 Copynumber: 5.2 Consensus size: 22
81336542 AAGTAGCAGT
*
81336552 AAAATAGCACCAAAACAGCATC
1 AAAACAGCACCAAAACAGCATC
* * *
81336574 AAAACAACACCAAAATACCATC
1 AAAACAGCACCAAAACAGCATC
* * * *
81336596 AAAACAGCACAAAAATACCTTC
1 AAAACAGCACCAAAACAGCATC
*
81336618 AAAACAGCACCAAAACAGCACC
1 AAAACAGCACCAAAACAGCATC
* * *
81336640 CAAACAGTAACAAAACAGCA-C
1 AAAACAGCACCAAAACAGCATC
81336661 AAAA
1 AAAA
81336665 AACAGCATCA
Statistics
Matches: 75, Mismatches: 16, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
21 4 0.05
22 71 0.95
ACGTcount: A:0.58, C:0.29, G:0.06, T:0.07
Consensus pattern (22 bp):
AAAACAGCACCAAAACAGCATC
Found at i:81336590 original size:33 final size:33
Alignment explanation
Indices: 81336552--81336689 Score: 111
Period size: 33 Copynumber: 4.1 Consensus size: 33
81336542 AAGTAGCAGT
*
81336552 AAAATAGCACCAAAACAGCATCAAAACAACACC
1 AAAACAGCACCAAAACAGCATCAAAACAACACC
* * *
81336585 AAAATACCATCAAAACAGCA-CAAAA-ATAC-CTTC
1 AAAACAGCACCAAAACAGCATCAAAACA-ACAC--C
* * ** *
81336618 AAAACAGCACCAAAACAGCACCCAAACAGTAAC
1 AAAACAGCACCAAAACAGCATCAAAACAACACC
* *
81336651 AAAACAGCACAAAAAACAGCATCACCAACAACACC
1 AAAACAGCAC-CAAAACAGCATCA-AAACAACACC
81336686 AAAA
1 AAAA
81336690 ACCTGCAAAA
Statistics
Matches: 81, Mismatches: 16, Indels: 14
0.73 0.14 0.13
Matches are distributed among these distances:
31 2 0.02
32 7 0.09
33 47 0.58
34 14 0.17
35 11 0.14
ACGTcount: A:0.57, C:0.30, G:0.06, T:0.07
Consensus pattern (33 bp):
AAAACAGCACCAAAACAGCATCAAAACAACACC
Found at i:81336846 original size:9 final size:9
Alignment explanation
Indices: 81336832--81336873 Score: 66
Period size: 9 Copynumber: 4.7 Consensus size: 9
81336822 ATCGAAGAAA
81336832 CATCGTCCT
1 CATCGTCCT
81336841 CATCGTCCT
1 CATCGTCCT
* *
81336850 CGTTGTCCT
1 CATCGTCCT
81336859 CATCGTCCT
1 CATCGTCCT
81336868 CATCGT
1 CATCGT
81336874 TCTTGCAACC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.10, C:0.40, G:0.14, T:0.36
Consensus pattern (9 bp):
CATCGTCCT
Found at i:81344187 original size:26 final size:27
Alignment explanation
Indices: 81344156--81344207 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
81344146 ATTGTTATAA
*
81344156 AATAAAGAGAGATA-GAAAG-AATAAAT
1 AATAAAGA-AAATATGAAAGCAATAAAT
81344182 AATAAAGAAAATATGAAAGCAATAAA
1 AATAAAGAAAATATGAAAGCAATAAA
81344208 GAATGTGCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 4 0.17
26 13 0.57
27 6 0.26
ACGTcount: A:0.67, C:0.02, G:0.15, T:0.15
Consensus pattern (27 bp):
AATAAAGAAAATATGAAAGCAATAAAT
Found at i:81349842 original size:47 final size:46
Alignment explanation
Indices: 81349730--81349947 Score: 232
Period size: 47 Copynumber: 4.7 Consensus size: 46
81349720 GATTTCTTGT
* * * **
81349730 GTGCCAGTGTAAGACAAGTCCGGGACATGCTTCGGCCACA-TTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CACAGAGATGA
*
81349776 GTGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACAGAGATGA
*
81349824 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGC-CTCGACGATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCAC-AGA-GATGA
* * *
81349871 -TAGCCAGTGCAAGACGTGTCTGGGACATGCATCGGCTA-AGAG-T-T
1 GT-GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-ACAGAGATGA
*
81349915 GTGCTAGTGTAAGACATGTCTGGGACATGCATC
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATC
81349948 AGCATGTAAT
Statistics
Matches: 148, Mismatches: 15, Indels: 20
0.81 0.08 0.11
Matches are distributed among these distances:
44 28 0.19
45 3 0.02
46 25 0.17
47 69 0.47
48 23 0.16
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.22
Consensus pattern (46 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCACAGAGATGA
Found at i:81349947 original size:91 final size:94
Alignment explanation
Indices: 81349727--81349947 Score: 274
Period size: 94 Copynumber: 2.4 Consensus size: 94
81349717 TCAGATTTCT
* * * ** *
81349727 TGTGTGCCAGTGTAAGACAAGTCCGGGACATGCTTCGGCCACATTATGAGTGCCAGTATAAGACC
1 TGTGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACACGATGAGTGCCAGTACAAGACC
81349792 ATGTCTGGGACATGGCATCGGCACAGAGA
66 ATGTCTGGGACATGGCATCGGCACAGAGA
* * *
81349821 TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACGATGA-TAGCCAGTGCAAGA
1 TGTGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ACGATGAGT-GCCAGTACAAGA
*
81349885 -CGTGTCTGGGACAT-GCATCGGCTA-AGAG-
64 CCATGTCTGGGACATGGCATCGGC-ACAGAGA
*
81349913 T-TGTGCTAGTGTAAGACATGTCTGGGACATGCATC
1 TGTGTGCCAGTGTAAGACATGTCTGGGACATGCATC
81349948 AGCATGTAAT
Statistics
Matches: 112, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
91 32 0.29
92 1 0.01
93 12 0.11
94 52 0.46
95 15 0.13
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.23
Consensus pattern (94 bp):
TGTGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACACGATGAGTGCCAGTACAAGACC
ATGTCTGGGACATGGCATCGGCACAGAGA
Found at i:81351318 original size:46 final size:46
Alignment explanation
Indices: 81351262--81351437 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
81351252 TGATTGAGCA
81351262 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
81351308 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
81351353 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
81351401 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81351438 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81351418 original size:93 final size:93
Alignment explanation
Indices: 81351259--81351430 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
81351249 GGATGATTGA
* *
81351259 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81351324 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
81351352 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81351417 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
81351431 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:81354653 original size:29 final size:29
Alignment explanation
Indices: 81354620--81354676 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
81354610 AGAACAAAAA
81354620 GTAAAATAAGTTAATCAAAACAATGATTG
1 GTAAAATAAGTTAATCAAAACAATGATTG
81354649 GTAAAATAAGTTAATCAAAACAATGATT
1 GTAAAATAAGTTAATCAAAACAATGATT
81354677 ACGTATACTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.53, C:0.07, G:0.12, T:0.28
Consensus pattern (29 bp):
GTAAAATAAGTTAATCAAAACAATGATTG
Found at i:81355040 original size:3 final size:3
Alignment explanation
Indices: 81355034--81355058 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
81355024 ATAATAATAA
81355034 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
81355059 TAAAGTATAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:81359167 original size:12 final size:13
Alignment explanation
Indices: 81359143--81359171 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
81359133 GGGCTATAAC
81359143 TATTGCATTTATT
1 TATTGCATTTATT
81359156 TATTGC-TTTATT
1 TATTGCATTTATT
81359168 TATT
1 TATT
81359172 CATGTATGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (13 bp):
TATTGCATTTATT
Found at i:81367065 original size:43 final size:43
Alignment explanation
Indices: 81367017--81367184 Score: 273
Period size: 43 Copynumber: 3.9 Consensus size: 43
81367007 GCTGGTATTA
*
81367017 TATTCGGGCCATCGTGCCTAGCAAGCTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAAGCTTAGTGCCGGTGATGTG
*
81367060 TATTCGGGCCTTCGTGCCTAGCAAGCTTAGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAAGCTTAGTGCCGGTGATGTG
* *
81367103 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAAGCTTAGTGCCGGTGATGTG
* * *
81367146 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAAGCTTAGTGCCGGTGA
81367185 AATGATATGT
Statistics
Matches: 117, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 117 1.00
ACGTcount: A:0.14, C:0.24, G:0.33, T:0.29
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAAGCTTAGTGCCGGTGATGTG
Found at i:81367614 original size:43 final size:45
Alignment explanation
Indices: 81367501--81367627 Score: 147
Period size: 45 Copynumber: 2.9 Consensus size: 45
81367491 TTGACTTGAT
* * * **
81367501 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAACAGGCTATAATGCCGGTGAGATAC
81367546 TATTCGGGCCTTCGAGCCTAACAGGCTATAATGCCGGT--GA-AC
1 TATTCGGGCCTTCGAGCCTAACAGGCTATAATGCCGGTGAGATAC
*
81367588 TGATATCGGGCC-TCGAGCCTAACAGGCGA-AATGCCGGTGA
1 T-AT-TCGGGCCTTCGAGCCTAACAGGCTATAATGCCGGTGA
81367628 TTTGAGAAAA
Statistics
Matches: 72, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
42 12 0.17
43 20 0.28
44 7 0.10
45 33 0.46
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (45 bp):
TATTCGGGCCTTCGAGCCTAACAGGCTATAATGCCGGTGAGATAC
Found at i:81379679 original size:23 final size:22
Alignment explanation
Indices: 81379627--81379679 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
81379617 TCCACGTCTT
*
81379627 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
81379649 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
81379672 TTTCTTTT
1 TTTCTTTT
81379680 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:81385300 original size:6 final size:6
Alignment explanation
Indices: 81385289--81385495 Score: 220
Period size: 6 Copynumber: 34.8 Consensus size: 6
81385279 ATTTGCCTAT
* * *
81385289 TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCCC TCTCCC TCCCTC
1 TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC
* * * * * * *
81385337 TCCCTC CCTCTC CCTCTC CCTCCC TCTCCC TCTCTC TCTCTC CCTCTC
1 TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC
* * * * * * * *
81385385 TCCCTC TCCCTC TCCCTC TCTCCC TCTCCC TCTCCC TCTCCC TCTCCC
1 TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC
* *
81385433 TCTC-C TCTCCC TCTCCC TCTC-C TCTCTC TCTCTC TCTCTC TCTCTC
1 TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC
81385479 TCTCTC TCTCTC TCTCT
1 TCTCTC TCTCTC TCTCT
81385496 ACCTACGTAA
Statistics
Matches: 186, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
5 10 0.05
6 176 0.95
ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40
Consensus pattern (6 bp):
TCTCTC
Found at i:81385304 original size:10 final size:10
Alignment explanation
Indices: 81385289--81385495 Score: 220
Period size: 10 Copynumber: 20.9 Consensus size: 10
81385279 ATTTGCCTAT
81385289 TCTCTCTCTC
1 TCTCTCTCTC
81385299 TCTCTCTCTC
1 TCTCTCTCTC
81385309 TCTCTCTCTC
1 TCTCTCTCTC
*
81385319 TCTCCCTCTC
1 TCTCTCTCTC
* *
81385329 CCTCCCTCTC
1 TCTCTCTCTC
* *
81385339 CCTCCCTCTC
1 TCTCTCTCTC
* *
81385349 CCTCTCCCTC
1 TCTCTCTCTC
* *
81385359 CCTCTCCCTC
1 TCTCTCTCTC
81385369 TCTCTCTCTC
1 TCTCTCTCTC
* *
81385379 CCTCTCTCCC
1 TCTCTCTCTC
*
81385389 TCTCCCTCTC
1 TCTCTCTCTC
* *
81385399 CCTCTCTCCC
1 TCTCTCTCTC
*
81385409 TCTCCCTCTC
1 TCTCTCTCTC
* *
81385419 CCTCTCCCTC
1 TCTCTCTCTC
*
81385429 TCCCTCTC-C
1 TCTCTCTCTC
*
81385438 TCTCCCTCTC
1 TCTCTCTCTC
*
81385448 CCTCTC-CTC
1 TCTCTCTCTC
81385457 TCTCTCTCTC
1 TCTCTCTCTC
81385467 TCTCTCTCTC
1 TCTCTCTCTC
81385477 TCTCTCTCTC
1 TCTCTCTCTC
81385487 TCTCTCTCT
1 TCTCTCTCT
81385496 ACCTACGTAA
Statistics
Matches: 167, Mismatches: 28, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
9 15 0.09
10 152 0.91
ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40
Consensus pattern (10 bp):
TCTCTCTCTC
Found at i:81385884 original size:20 final size:20
Alignment explanation
Indices: 81385851--81385890 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
81385841 TCTCTCCCAA
*
81385851 AGTAATTATGAAAGTAAAAT
1 AGTAATTATAAAAGTAAAAT
* *
81385871 AGTAATTTTAAAAGTCAAAT
1 AGTAATTATAAAAGTAAAAT
81385891 TCAGCAAAGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.53, C:0.03, G:0.12, T:0.33
Consensus pattern (20 bp):
AGTAATTATAAAAGTAAAAT
Found at i:81388283 original size:4 final size:4
Alignment explanation
Indices: 81388274--81388304 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
81388264 TTCTCGCAGA
*
81388274 ATAC ATAC ATTC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
81388305 GAGGTCATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.29
Consensus pattern (4 bp):
ATAC
Found at i:81389001 original size:12 final size:12
Alignment explanation
Indices: 81388972--81389008 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
81388962 GTTGAGTTTG
81388972 GATATATTCTT-
1 GATATATTCTTA
*
81388983 CATATATTCTTA
1 GATATATTCTTA
81388995 GATATATTCTTA
1 GATATATTCTTA
81389007 GA
1 GA
81389009 CATGCAAGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 10 0.43
12 13 0.57
ACGTcount: A:0.32, C:0.11, G:0.08, T:0.49
Consensus pattern (12 bp):
GATATATTCTTA
Found at i:81390481 original size:31 final size:31
Alignment explanation
Indices: 81390443--81390508 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
81390433 GTCTGGGTAT
**
81390443 CAAATTGAACATTGAAGGCAAACTCAAGTAC
1 CAAATTGAACATTGAAACCAAACTCAAGTAC
*
81390474 CAAATTGAATATTGAAACCAAACTCAAGTAC
1 CAAATTGAACATTGAAACCAAACTCAAGTAC
81390505 CAAA
1 CAAA
81390509 ATAGTTTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.48, C:0.20, G:0.12, T:0.20
Consensus pattern (31 bp):
CAAATTGAACATTGAAACCAAACTCAAGTAC
Done.