Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 251 of 290
Found at i:81391988 original size:38 final size:39
Alignment explanation
Indices: 81391946--81392037 Score: 105
Period size: 38 Copynumber: 2.3 Consensus size: 39
81391936 CGTTTGAATG
* *
81391946 AAAAACGCCGCTAAAGAACGAGCATTAGCGGCG-CTTTT
1 AAAAACGCCGCTAAAGAACAAGCATTAGCGACGTCTTTT
* * * *
81391984 AAAAATGCCGCTAAAGATCAAGTATTAGCGACGTTTTTTTT
1 AAAAACGCCGCTAAAGAACAAGCATTAGCGACG--TCTTTT
81392025 AAAAACGCCGCTA
1 AAAAACGCCGCTA
81392038 TATGATGCCG
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
38 28 0.64
41 16 0.36
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.24
Consensus pattern (39 bp):
AAAAACGCCGCTAAAGAACAAGCATTAGCGACGTCTTTT
Found at i:81392449 original size:7 final size:7
Alignment explanation
Indices: 81392437--81392462 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
81392427 GGTTTAAGAC
81392437 TTAGGGG
1 TTAGGGG
81392444 TTAGGGG
1 TTAGGGG
81392451 TTAGGGG
1 TTAGGGG
81392458 TTAGG
1 TTAGG
81392463 TTTTTAGGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.54, T:0.31
Consensus pattern (7 bp):
TTAGGGG
Found at i:81396943 original size:19 final size:19
Alignment explanation
Indices: 81396919--81396986 Score: 104
Period size: 19 Copynumber: 3.7 Consensus size: 19
81396909 TTAAATTTTC
81396919 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCT
*
81396938 AAGATTG--TATCATATTT
1 AAGATTGCATATCATATCT
*
81396955 AAGATTGCATATTATATCT
1 AAGATTGCATATCATATCT
81396974 AAGATTGCATATC
1 AAGATTGCATATC
81396987 CTTAAATATT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
17 16 0.37
19 27 0.63
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (19 bp):
AAGATTGCATATCATATCT
Found at i:81397687 original size:44 final size:44
Alignment explanation
Indices: 81397514--81397698 Score: 153
Period size: 44 Copynumber: 4.2 Consensus size: 44
81397504 CAAATATGGA
* **
81397514 GATGCCTAATCTACTATCTTCAA-CTTGTTCCCTATAAACACAGG
1 GATGCCAAATCTGTTATCTTCAATC-TGTTCCCTATAAACACAGG
** * * *
81397558 GATGCC--ATGCTGAAATCTTTAATCTGCTTCGCTGTAAACACAGG
1 GATGCCAAAT-CTGTTATCTTCAATCTG-TTCCCTATAAACACAGG
* * * * * *
81397602 AATGTCAGATTTGTTATGTCTTCGATCTGTTCCCTGTAAACACAGG
1 GATGCCAAATCTGTTA--TCTTCAATCTGTTCCCTATAAACACAGG
*
81397648 GATGCCAAATCTGTTATCTTCAA-CTTGTTCCCTAAAAACACAGG
1 GATGCCAAATCTGTTATCTTCAATC-TGTTCCCTATAAACACAGG
81397692 GATGCCA
1 GATGCCA
81397699 TGTTAAAATC
Statistics
Matches: 112, Mismatches: 21, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
42 2 0.02
43 12 0.11
44 56 0.50
45 3 0.03
46 30 0.27
47 9 0.08
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (44 bp):
GATGCCAAATCTGTTATCTTCAATCTGTTCCCTATAAACACAGG
Found at i:81397696 original size:134 final size:134
Alignment explanation
Indices: 81397444--81397792 Score: 439
Period size: 134 Copynumber: 2.6 Consensus size: 134
81397434 GTCATCTTGG
* * * * ** * * *
81397444 ATCTGCTTCGATGTAAACACATGAAGGTCAGATCTACTATGTCTTTAATCTGCTCTCTGTCAAAT
1 ATCTGCTTCGCTGTAAACACAGGAATGTCAGATCTGCTATGTCTTCGATCTGTTCCCTGT-AAAC
* * * *
81397509 A-TGGAGATGCCTAATCTACTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAA
65 ACAGG-GATGCCAAATCTACTATCTTCAACTTGTTCCCTAAAAACACAGGGATGCCATGCTAAAA
81397573 TCTTTA
129 TCTTTA
* *
81397579 ATCTGCTTCGCTGTAAACACAGGAATGTCAGATTTGTTATGTCTTCGATCTGTTCCCTGTAAACA
1 ATCTGCTTCGCTGTAAACACAGGAATGTCAGATCTGCTATGTCTTCGATCTGTTCCCTGTAAACA
** *
81397644 CAGGGATGCCAAATCTGTTATCTTCAACTTGTTCCCTAAAAACACAGGGATGCCATGTTAAAATC
66 CAGGGATGCCAAATCTACTATCTTCAACTTGTTCCCTAAAAACACAGGGATGCCATGCTAAAATC
*
81397709 TTTG
131 TTTA
* * * * *
81397713 ATTTGCTTCGCTGCAAGCATAGGAATGTCAGATCTGCTATGTCTTCGATCTGTTCCCTATAAACA
1 ATCTGCTTCGCTGTAAACACAGGAATGTCAGATCTGCTATGTCTTCGATCTGTTCCCTGTAAACA
* *
81397778 CAGGAATGCTAAATC
66 CAGGGATGCCAAATC
81397793 ATCTTGGATC
Statistics
Matches: 185, Mismatches: 28, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
134 133 0.72
135 52 0.28
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (134 bp):
ATCTGCTTCGCTGTAAACACAGGAATGTCAGATCTGCTATGTCTTCGATCTGTTCCCTGTAAACA
CAGGGATGCCAAATCTACTATCTTCAACTTGTTCCCTAAAAACACAGGGATGCCATGCTAAAATC
TTTA
Found at i:81398133 original size:176 final size:176
Alignment explanation
Indices: 81397889--81398324 Score: 635
Period size: 176 Copynumber: 2.5 Consensus size: 176
81397879 AAATCTTCTA
* * * * *
81397889 TCTTCGATCTGCTCTCTGCC-AATACAGAGA-CGCCAAATCTATTATCTTCGATCTGCTCTCTGC
1 TCTTCGATCTGCTTTCTGCCGAATATAGAGATC-CCAAATCTGTAATCTTTGATCTGCTCTCTGC
* * *
81397952 CAATACAGAGATGTCAAATTTGTTATCTTCGATCTACTCTCTGCTAATACAGAGATGCCAAATCA
65 CAATACAGAGATGTCAAATCTGCTATCTTCGATCTACTCTCTGCCAATACAGAGATGCCAAATCA
* *
81398017 TTTTAGAATTGCTTCAACGTAAACACGTGGAAGCTAAATCAGCTATG
130 TCTTAGAATTGCTTCAACGTAAACACGTGGAAGCCAAATCAGCTATG
* *
81398064 TCTTCGATCTGCTTTCTGCCGAATATAGAGATCCCAAATCTGTAATCTTTGATTTGCTCTTTGCC
1 TCTTCGATCTGCTTTCTGCCGAATATAGAGATCCCAAATCTGTAATCTTTGATCTGCTCTCTGCC
* * *
81398129 AATACAGAGATGCCAAATCTGCTATCTTCGATTTGCTCTCTGCCAATACAGAGATGCCAAATCAT
66 AATACAGAGATGTCAAATCTGCTATCTTCGATCTACTCTCTGCCAATACAGAGATGCCAAATCAT
*
81398194 CTTAGACTTGCTTCAACGTAAACACGTGGAAGCCAAATCAGCTATG
131 CTTAGAATTGCTTCAACGTAAACACGTGGAAGCCAAATCAGCTATG
* * * *
81398240 TCTTCGATCTG-TTTTTCGCCGAATATAGAGATGCCAAATCTGTCATTTTTGATCTGCTCTCTGC
1 TCTTCGATCTGCTTTCT-GCCGAATATAGAGATCCCAAATCTGTAATCTTTGATCTGCTCTCTGC
*
81398304 CGGATACAGAGATGTCAAATC
65 C-AATACAGAGATGTCAAATC
81398325 ATCTTAGATT
Statistics
Matches: 233, Mismatches: 24, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
175 23 0.10
176 192 0.82
177 18 0.08
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.32
Consensus pattern (176 bp):
TCTTCGATCTGCTTTCTGCCGAATATAGAGATCCCAAATCTGTAATCTTTGATCTGCTCTCTGCC
AATACAGAGATGTCAAATCTGCTATCTTCGATCTACTCTCTGCCAATACAGAGATGCCAAATCAT
CTTAGAATTGCTTCAACGTAAACACGTGGAAGCCAAATCAGCTATG
Found at i:81398372 original size:133 final size:131
Alignment explanation
Indices: 81398126--81398456 Score: 457
Period size: 133 Copynumber: 2.5 Consensus size: 131
81398116 TTTGCTCTTT
*
81398126 GCCAATACAGAGATGCCAAATCTG-CTATCTTCGATTTGCTCTCTGCCAATACAGAGATGCCAAA
1 GCCAATACAGAGATGCCAAATCTGTC-ATCTTTGATTTGCTCTCTGCCAATACAGAGATGCCAAA
* * * * *
81398190 TCATCTTAGACTTGCTTCAACGTAAACACGTGGAAGCCAAATCAGCTATGTCTTCGATCTGTTTT
65 TCATCTTAGACTTGCTTCAACGTAAACACATGAAAGCCAAATCAACTATGTCTTCGATCTGCTCT
*
81398255 TC
130 CC
* * * * *
81398257 GCCGAATATAGAGATGCCAAATCTGTCATTTTTGATCTGCTCTCTGCCGGATACAGAGATGTCAA
1 GCC-AATACAGAGATGCCAAATCTGTCATCTTTGATTTGCTCTCTGCC-AATACAGAGATGCCAA
* * *
81398322 ATCATCTTAGATTTGCTTCAACGTGAACACATGAAAGCCAAATCAACTATGTTTTCGATCTGCTC
64 ATCATCTTAGACTTGCTTCAACGTAAACACATGAAAGCCAAATCAACTATGTCTTCGATCTGCTC
81398387 TCC
129 TCC
* * *
81398390 GCCAGATACAGAGATGCCGAATTTATCATCTTTGATTTGCTCTCTGCCAATACAGAGATGCCAAA
1 GCCA-ATACAGAGATGCCAAATCTGTCATCTTTGATTTGCTCTCTGCCAATACAGAGATGCCAAA
81398455 TC
65 TC
81398457 TGTTATTTTT
Statistics
Matches: 173, Mismatches: 23, Indels: 7
0.85 0.11 0.03
Matches are distributed among these distances:
131 3 0.02
132 56 0.32
133 114 0.66
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (131 bp):
GCCAATACAGAGATGCCAAATCTGTCATCTTTGATTTGCTCTCTGCCAATACAGAGATGCCAAAT
CATCTTAGACTTGCTTCAACGTAAACACATGAAAGCCAAATCAACTATGTCTTCGATCTGCTCTC
C
Found at i:81398400 original size:88 final size:88
Alignment explanation
Indices: 81398272--81398588 Score: 314
Period size: 88 Copynumber: 3.6 Consensus size: 88
81398262 ATATAGAGAT
* * * * *
81398272 GCCAAATCTGTCAT-TTTT-GATCTGCTCTCTGCCGGATACAGAGATGTCAAATCATCTTAGATT
1 GCCAAATCAGTTATGTTTTCGATCTGCTCTCCGCCAGATACAGAGATGCCAAATCATCTTAGATT
81398335 TGCTTCAACGTGAACACATGAAA
66 TGCTTCAACGTGAACACATGAAA
** *
81398358 GCCAAATCAACTATGTTTTCGATCTGCTCTCCGCCAGATACAGAGATGCCGAATTTATCATCTTT
1 GCCAAATCAGTTATGTTTTCGATCTGCTCTCCGCCAGATACAGAGATGCC-AA---ATCATCTTA
* * *
81398423 GATTTGC-TC-TC-TGCCAATACA-GAGAT
62 GATTTGCTTCAACGTG--AACACATGA-AA
* * * * *
81398449 GCCAAATCTGTTAT-TTTT-GATATGCTCTCTGCCA-ATATAGAGATGCCAAATCATTTTAGATT
1 GCCAAATCAGTTATGTTTTCGATCTGCTCTCCGCCAGATACAGAGATGCCAAATCATCTTAGATT
*
81398511 TGCTTCAACGTAAACACATGAAA
66 TGCTTCAACGTGAACACATGAAA
* *
81398534 GCTAAATCAGTTATGTCTTCGATCTGCT-TCCGCC-GAATACAGAGATGCCAAATCA
1 GCCAAATCAGTTATGTTTTCGATCTGCTCTCCGCCAG-ATACAGAGATGCCAAATCA
81398589 GTCATTTTCG
Statistics
Matches: 185, Mismatches: 29, Indels: 33
0.75 0.12 0.13
Matches are distributed among these distances:
84 14 0.08
85 20 0.11
86 21 0.11
87 32 0.17
88 39 0.21
89 18 0.10
90 7 0.04
91 19 0.10
92 15 0.08
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (88 bp):
GCCAAATCAGTTATGTTTTCGATCTGCTCTCCGCCAGATACAGAGATGCCAAATCATCTTAGATT
TGCTTCAACGTGAACACATGAAA
Found at i:81398423 original size:309 final size:305
Alignment explanation
Indices: 81397933--81398762 Score: 1058
Period size: 309 Copynumber: 2.7 Consensus size: 305
81397923 AAATCTATTA
* * * * * * *
81397933 TCTTCGATCTGCTCTCTGCC-AATACAGAGATGTCAAATTTGTTATCTTCGATCTACTCTCTGCT
1 TCTTCGATCTGCT-TCCGCCGAATACAGAGATGCCAAATCTGTCATTTTCGATCTGCTCTCTGCC
* * * * *
81397997 AATACAGAGATGCCAAATCATTTTAGAATTGCTTCAACGTAAACACGTGGAAGCTAAATCAGCTA
65 AATACAGAGATG-CAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAACTA
* * * * *
81398062 TGTCTTCGATCTGCTTTCTGCC-GAATATAGAGATCCCAAATCTGTAATCTTTGATTTGCTCTTT
129 TGTCTTCGATCTGCTCTCTGCCAG-ATACAGAGATGCCAAATCTAT-ATCTTTGATTTGCTCTCT
*
81398126 GCCAATACAGAGATGCCAAATCTGCTATCTTCGATTTGCTCTCTGCCAATACAGAGATGCCAAAT
192 GCCAATACAGAGATGCCAAATCTGCTATCTTCGATATGCTCTCTGCCAATACAGAGATGCCAAAT
* *
81398191 CATCTTAGACTTGCTTCAACGTAAACACGTGGAAGCCAAATCAGCTATG
257 CATCTTAGACTTGCTTCAACGTAAACACATGAAAGCCAAATCAGCTATG
* * * *
81398240 TCTTCGATCTGTTTTTCGCCGAATATAGAGATGCCAAATCTGTCATTTTTGATCTGCTCTCTGCC
1 TCTTCGATCTG-CTTCCGCCGAATACAGAGATGCCAAATCTGTCATTTTCGATCTGCTCTCTGCC
* * *
81398305 GGATACAGAGATGTCAAATCATCTTAGATTTGCTTCAACGTGAACACATGAAAGCCAAATCAACT
65 -AATACAGAGATG-CAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAACT
* * * *
81398370 ATGTTTTCGATCTGCTCTCCGCCAGATACAGAGATGCCGAATTTATCATCTTTGATTTGCTCTCT
128 ATGTCTTCGATCTGCTCTCTGCCAGATACAGAGATGCCAAATCTAT-ATCTTTGATTTGCTCTCT
* * * *
81398435 GCCAATACAGAGATGCCAAATCTGTTATTTTTGATATGCTCTCTGCCAATATAGAGATGCCAAAT
192 GCCAATACAGAGATGCCAAATCTGCTATCTTCGATATGCTCTCTGCCAATACAGAGATGCCAAAT
* * * *
81398500 CATTTTAGATTTGCTTCAACGTAAACACATGAAAGCTAAATCAGTTATG
257 CATCTTAGACTTGCTTCAACGTAAACACATGAAAGCCAAATCAGCTATG
* * *
81398549 TCTTCGATCTGCTTCCGCCGAATACAGAGATGCCAAATCAGTCATTTTCGATCTGCTTTTTGCCA
1 TCTTCGATCTGCTTCCGCCGAATACAGAGATGCCAAATCTGTCATTTTCGATCTGCTCTCTGCCA
* **
81398614 ATACAGAGACGCTAAATCATCTTAGATTTATTTCAACGTAAACACGTGAAAGCCAAATCAGA-TA
66 ATACAGAGATGC-AAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCA-ACTA
* * *
81398678 TGTCTTCGATCTGCTC-CTTGCCA-ATACAGAGATGCCAAATCTAGTATCTTCGATCTGCTCCCT
129 TGTCTTCGATCTGCTCTC-TGCCAGATACAGAGATGCCAAATCTA-TATCTTTGATTTGCTCTCT
* **
81398741 GACAATACAGAGACACCAAATC
192 GCCAATACAGAGATGCCAAATC
81398763 ATCTTGGATC
Statistics
Matches: 451, Mismatches: 64, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
306 54 0.12
307 90 0.20
308 84 0.19
309 222 0.49
310 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.31
Consensus pattern (305 bp):
TCTTCGATCTGCTTCCGCCGAATACAGAGATGCCAAATCTGTCATTTTCGATCTGCTCTCTGCCA
ATACAGAGATGCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAACTATG
TCTTCGATCTGCTCTCTGCCAGATACAGAGATGCCAAATCTATATCTTTGATTTGCTCTCTGCCA
ATACAGAGATGCCAAATCTGCTATCTTCGATATGCTCTCTGCCAATACAGAGATGCCAAATCATC
TTAGACTTGCTTCAACGTAAACACATGAAAGCCAAATCAGCTATG
Found at i:81398561 original size:176 final size:176
Alignment explanation
Indices: 81398261--81398631 Score: 507
Period size: 176 Copynumber: 2.1 Consensus size: 176
81398251 TTTTTCGCCG
* * * *
81398261 AATATAGAGATGCCAAATCTGTCATTTTTGATCTGCTCTCTGCCGGATACAGAGATGTCAAATCA
1 AATACAGAGATGCCAAATCTGTCATTTTTGATATGCTCTCTGCCGAATACAGAGATGCCAAATCA
* *
81398326 TCTTAGATTTGCTTCAACGTGAACACATGAAAGCCAAATCAACTATGTTTTCGATCTGCTCTCCG
66 TCTTAGATTTGCTTCAACGTAAACACATGAAAGCCAAATCAACTATGTCTTCGATCTGCT-TCCG
* * *
81398391 CC-AGATACAGAGATGCCGAATTTA-TCATCTTT-GATTTGCTCTCTGCC
130 CCGA-ATACAGAGATGCC-AAATCAGTCAT-TTTCGATCTGCTCTCTGCC
* *
81398438 AATACAGAGATGCCAAATCTGTTATTTTTGATATGCTCTCTGCC-AATATAGAGATGCCAAATCA
1 AATACAGAGATGCCAAATCTGTCATTTTTGATATGCTCTCTGCCGAATACAGAGATGCCAAATCA
* * **
81398502 TTTTAGATTTGCTTCAACGTAAACACATGAAAGCTAAATCAGTTATGTCTTCGATCTGCTTCCGC
66 TCTTAGATTTGCTTCAACGTAAACACATGAAAGCCAAATCAACTATGTCTTCGATCTGCTTCCGC
* *
81398567 CGAATACAGAGATGCCAAATCAGTCATTTTCGATCTGCTTTTTGCC
131 CGAATACAGAGATGCCAAATCAGTCATTTTCGATCTGCTCTCTGCC
* *
81398613 AATACAGAGACGCTAAATC
1 AATACAGAGATGCCAAATC
81398632 ATCTTAGATT
Statistics
Matches: 172, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
174 7 0.04
175 52 0.30
176 72 0.42
177 41 0.24
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (176 bp):
AATACAGAGATGCCAAATCTGTCATTTTTGATATGCTCTCTGCCGAATACAGAGATGCCAAATCA
TCTTAGATTTGCTTCAACGTAAACACATGAAAGCCAAATCAACTATGTCTTCGATCTGCTTCCGC
CGAATACAGAGATGCCAAATCAGTCATTTTCGATCTGCTCTCTGCC
Found at i:81398602 original size:44 final size:44
Alignment explanation
Indices: 81397847--81398763 Score: 281
Period size: 44 Copynumber: 20.9 Consensus size: 44
81397837 TGTTCTTCTC
* *** * * *
81397847 TTCGATATGCTCTCTAATAATACAGAGACGCCAAATC-TTCTATC
1 TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCAGTC-ATT
* * *
81397891 TTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTA-TTATC
1 TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATC-AGTCATT
* ** * *
81397935 TTCGATCTGCTCTCTGCCAATACAGAGATGTCAAATTTGTTATC
1 TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCAGTCATT
* *
81397979 TTCGATCTACTCTCTGCTAATACAGAGATGCC-AA--A-TCATT
1 TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCAGTCATT
* ** * * * *
81398019 TTAGAAT-TGCT-TCAACGTAA-ACACGTGGAAGCTAAATCAG-CTATGT
1 TTCG-ATCTGCTCTCTGC-CAATACA-G-AGATGCCAAATCAGTC-AT-T
* * * * *
81398065 CTTCGATCTGCTTTCTGCCGAATATAGAGATCCCAAATCTGTAATCT
1 -TTCGATCTGCTCTCTGCC-AATACAGAGATGCCAAATCAGTCAT-T
* * * *
81398112 TT-GATTTGCTCTTTGCCAATACAGAGATGCCAAATCTG-CTATC
1 TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCAGTC-ATT
*
81398155 TTCGATTTGCTCTCTGCCAATACAGAGATGCCAAATCA-TC---
1 TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCAGTCATT
* ** * * *
81398195 TTAGA-CTTGCT-TCAACGTAA-ACACGTGGAAGCCAAATCAG-CTATGT
1 TTCGATC-TGCTCTCTGC-CAATACA-G-AGATGCCAAATCAGTC-AT-T
* * * *
81398241 CTTCGATCTG-TTTTTCGCCGAATATAGAGATGCCAAATCTGTCATT
1 -TTCGATCTGCTCTCT-GCC-AATACAGAGATGCCAAATCAGTCATT
* * *
81398287 TTTGATCTGCTCTCTGCCGGATACAGAGATGTCAAATCA-TC---
1 TTCGATCTGCTCTCTGCC-AATACAGAGATGCCAAATCAGTCATT
* * * * * *
81398328 TTAGATTTGCTTCAACGTG--AACACATGA-AAGCCAAATCA-ACTATGTT
1 TTCGATCTGC-TC-TC-TGCCAATACA-GAGATGCCAAATCAGTC-A--TT
* * *
81398375 TTCGATCTGCTCTCCGCCAGATACAGAGATGCCGAATTTA-TCATCT
1 TTCGATCTGCTCTCTGCCA-ATACAGAGATGCC-AAATCAGTCAT-T
* * *
81398421 TT-GATTTGCTCTCTGCCAATACAGAGATGCCAAATCTGTTATT
1 TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCAGTCATT
* * *
81398464 TTTGATATGCTCTCTGCCAATATAGAGATGCC-AA--A-TCATT
1 TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCAGTCATT
* * ** * * * * *
81398504 TTAGATTTGCT-TCAACGTAA-ACACATGAAAGCTAAATCAGTTATGT
1 TTCGATCTGCTCTCTGC-CAATACAGA-G-ATGCCAAATCAGTCAT-T
*
81398550 CTTCGATCTGCT-TCCGCCGAATACAGAGATGCCAAATCAGTCATT
1 -TTCGATCTGCTCTCTGCC-AATACAGAGATGCCAAATCAGTCATT
* * * *
81398595 TTCGATCTGCTTTTTGCCAATACAGAGACGCTAAATCA-TC---
1 TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCAGTCATT
* ** * ** * * *
81398635 TTAGAT-TTATTTCAACGTAA-ACACGTGAAAGCCAAATCAGAT-ATGT
1 TTCGATCTGCTCTCTGC-CAATACA-GAG-ATGCCAAATCAG-TCAT-T
*
81398681 CTTCGATCTGCTC-CTTGCCAATACAGAGATGCCAAATCTAGT-ATC
1 -TTCGATCTGCTCTC-TGCCAATACAGAGATGCCAAATC-AGTCATT
* * **
81398726 TTCGATCTGCTCCCTGACAATACAGAGACACCAAATCA
1 TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCA
81398764 TCTTGGATCT
Statistics
Matches: 649, Mismatches: 139, Indels: 171
0.68 0.14 0.18
Matches are distributed among these distances:
39 26 0.04
40 49 0.08
41 52 0.08
42 8 0.01
43 17 0.03
44 271 0.42
45 68 0.10
46 44 0.07
47 83 0.13
48 27 0.04
49 4 0.01
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (44 bp):
TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCAGTCATT
Found at i:81398786 original size:131 final size:131
Alignment explanation
Indices: 81398433--81398779 Score: 459
Period size: 131 Copynumber: 2.6 Consensus size: 131
81398423 GATTTGCTCT
* * * *
81398433 CTGCCAATACAGAGATGCCAAATCT-GTTATTTTTGATATGCTCTCTGCCAATATAGAGATGCCA
1 CTGCCAATACAGAGATGCCAAATCTAG-TATTTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * *
81398497 AATCATTTTAGATTTGCTTCAACGTAAACACATGAAAGCTAAATCAGTTATGTCTTCGATCTGCT
65 AATCATCTTAGATTTGCTTCAACGTAAACACATGAAAGCCAAATCAGATATGTCTTCGATCTGCT
81398562 TC
130 TC
* * *
81398564 C-GCCGAATACAGAGATGCCAAATC-AGTCATTTTCGATCTGCTTTTTGCCAATACAGAGACGCT
1 CTGCC-AATACAGAGATGCCAAATCTAGT-ATTTTCGATCTGCTCTCTGCCAATACAGAGACGCC
** *
81398627 AAATCATCTTAGATTTATTTCAACGTAAACACGTGAAAGCCAAATCAGATATGTCTTCGATCTGC
64 AAATCATCTTAGATTTGCTTCAACGTAAACACATGAAAGCCAAATCAGATATGTCTTCGATCTGC
81398692 -TC
129 TTC
* * * *
81398694 CTTGCCAATACAGAGATGCCAAATCTAGTATCTTCGATCTGCTCCCTGACAATACAGAGACACCA
1 C-TGCCAATACAGAGATGCCAAATCTAGTATTTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* *
81398759 AATCATCTTGGATCTGCTTCA
65 AATCATCTTAGATTTGCTTCA
81398780 GTGTAAATAC
Statistics
Matches: 186, Mismatches: 24, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
130 7 0.04
131 173 0.93
132 6 0.03
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (131 bp):
CTGCCAATACAGAGATGCCAAATCTAGTATTTTCGATCTGCTCTCTGCCAATACAGAGACGCCAA
ATCATCTTAGATTTGCTTCAACGTAAACACATGAAAGCCAAATCAGATATGTCTTCGATCTGCTT
C
Found at i:81399735 original size:9 final size:9
Alignment explanation
Indices: 81399721--81399771 Score: 52
Period size: 9 Copynumber: 5.9 Consensus size: 9
81399711 GGCCTCTCTA
81399721 TTTTTTTTC
1 TTTTTTTTC
81399730 -TTTTTTT-
1 TTTTTTTTC
* *
81399737 TTCTCTTTC
1 TTTTTTTTC
* *
81399746 TTCTTTTTA
1 TTTTTTTTC
81399755 TTTTTTTTC
1 TTTTTTTTC
81399764 TTTTTTTT
1 TTTTTTTT
81399772 GAAATAGAAG
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
8 12 0.35
9 22 0.65
ACGTcount: A:0.02, C:0.12, G:0.00, T:0.86
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:81404469 original size:22 final size:21
Alignment explanation
Indices: 81404439--81404504 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
81404429 TACAAATTAA
81404439 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
81404461 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
81404482 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
81404501 ATCT
1 ATCT
81404505 AAGATTGCAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:81404491 original size:19 final size:19
Alignment explanation
Indices: 81404456--81404517 Score: 106
Period size: 19 Copynumber: 3.2 Consensus size: 19
81404446 AGATTACAAG
81404456 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
81404477 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
81404496 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
81404515 ATC
1 ATC
81404518 CTTAAAGATT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 32 0.78
20 1 0.02
21 8 0.20
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:81406430 original size:23 final size:23
Alignment explanation
Indices: 81406398--81407268 Score: 469
Period size: 23 Copynumber: 38.0 Consensus size: 23
81406388 TAGTAGTAAA
81406398 TGTTGCAAATTGAAGTGTTTAAG
1 TGTTGCAAATTGAAGTGTTTAAG
*
81406421 TATTGCAAATTGAAGTGTTT-AG
1 TGTTGCAAATTGAAGTGTTTAAG
* * *
81406443 TTGCTGGAAATTG-AGATGTTTTA-
1 -TGTTGCAAATTGAAG-TGTTTAAG
* * * *
81406466 TCGTTG-TAATTGAGGTGTATAAA
1 T-GTTGCAAATTGAAGTGTTTAAG
** * * *
81406489 TGTTGTTAATTCAAATGTTAAAG
1 TGTTGCAAATTGAAGTGTTTAAG
*
81406512 TGCTGCAAATTGAAGTGTTTTAA-
1 TGTTGCAAATTGAAGTG-TTTAAG
* ** * *
81406535 TGCTATAAATTGAAGTGTTAAAC
1 TGTTGCAAATTGAAGTGTTTAAG
*
81406558 TGCTGCAAATTGAAGTGTTTGAA-
1 TGTTGCAAATTGAAGTGTTT-AAG
* *
81406581 TGTTGTAAATTGAAGTGTTTAAA
1 TGTTGCAAATTGAAGTGTTTAAG
* * * *
81406604 TGCTGTAAATTGAAGTGCTTAAA
1 TGTTGCAAATTGAAGTGTTTAAG
81406627 TGTTGCAAATTGAAGTGTTTAAG
1 TGTTGCAAATTGAAGTGTTTAAG
**
81406650 TACTGCAAATTGAAGTGTTT-AG
1 TGTTGCAAATTGAAGTGTTTAAG
* * *
81406672 TTGTTGGACATTG-AGATGTTTTA-
1 -TGTTGCAAATTGAAG-TGTTTAAG
* * * * *
81406695 TCGCTG-TAATTGAGGTGTATAAA
1 T-GTTGCAAATTGAAGTGTTTAAG
** * *
81406718 TGTTGTTAATTGAGGTGTTAAAG
1 TGTTGCAAATTGAAGTGTTTAAG
* *
81406741 TGCTGTAAATTGAAGTGTTTGAA-
1 TGTTGCAAATTGAAGTGTTT-AAG
* * *
81406764 TGCTGTAAATTGAAGTGTTTAAA
1 TGTTGCAAATTGAAGTGTTTAAG
* * * *
81406787 TGCTGTAAATTGAAGTGCTTAAA
1 TGTTGCAAATTGAAGTGTTTAAG
*
81406810 TGTTGCAAATTAAAGTGTTTAAG
1 TGTTGCAAATTGAAGTGTTTAAG
** *
81406833 TACTGCAAATTGAAGTATTT-AG
1 TGTTGCAAATTGAAGTGTTTAAG
* * *
81406855 T-TACTGGACATTG-AGATGTTTTA-
1 TGT--TGCAAATTGAAG-TGTTTAAG
* * * * *
81406878 TCGCTG-TAATTGAGGTGTATAAA
1 T-GTTGCAAATTGAAGTGTTTAAG
** *
81406901 TGTTGTTAATTG-AGATGTTAAAG
1 TGTTGCAAATTGAAG-TGTTTAAG
* * *
81406924 TGCTGCAAATTGAAGTGCTTAAA
1 TGTTGCAAATTGAAGTGTTTAAG
** * *
81406947 TGCCGTAAATTGAAGTGTTAAAG
1 TGTTGCAAATTGAAGTGTTTAAG
*
81406970 TGCTGCAAATTGAAGTGTTTGAA-
1 TGTTGCAAATTGAAGTGTTT-AAG
* *
81406993 TGTTGTAAATTGAAGTGTTTAAA
1 TGTTGCAAATTGAAGTGTTTAAG
* * ** *
81407016 TGCTGTAAATTGAAGTACTTAAA
1 TGTTGCAAATTGAAGTGTTTAAG
81407039 TGTTGCAAATTGAAGTGTTTAAG
1 TGTTGCAAATTGAAGTGTTTAAG
**
81407062 TACTGCAAATTGAAGTGTTT-AG
1 TGTTGCAAATTGAAGTGTTTAAG
* * *
81407084 TTGCTGGACATTG-AGATGTTT---
1 -TGTTGCAAATTGAAG-TGTTTAAG
* * * * *
81407105 TATCGCTATAATTGAGGTGTATAAA
1 TGTTGC-A-AATTGAAGTGTTTAAG
** *
81407130 TGTTGTTAATTG-AGATGTTAAAG
1 TGTTGCAAATTGAAG-TGTTTAAG
* *
81407153 TGCTGCAAATTGAAGTGTTAAAG
1 TGTTGCAAATTGAAGTGTTTAAG
*
81407176 TGCTGCAAATTGAAGTGTTTGAA-
1 TGTTGCAAATTGAAGTGTTT-AAG
* *
81407199 TGCTGCAAATTGAAGTGTTTAAA
1 TGTTGCAAATTGAAGTGTTTAAG
* * * *
81407222 TGCTGTAAATTGAAGTGCTTAAA
1 TGTTGCAAATTGAAGTGTTTAAG
81407245 TGTTGCAAATTGAAGTGTTTAAG
1 TGTTGCAAATTGAAGTGTTTAAG
81407268 T
1 T
81407269 ACTTATTTTG
Statistics
Matches: 669, Mismatches: 134, Indels: 90
0.75 0.15 0.10
Matches are distributed among these distances:
20 2 0.00
21 1 0.00
22 79 0.12
23 565 0.84
24 19 0.03
25 3 0.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (23 bp):
TGTTGCAAATTGAAGTGTTTAAG
Found at i:81406738 original size:183 final size:183
Alignment explanation
Indices: 81406542--81407032 Score: 795
Period size: 183 Copynumber: 2.7 Consensus size: 183
81406532 TAATGCTATA
* * *
81406542 AATTGAAGTGTTAAACTGCTGCAAATTGAAGTGTTTGAATGTTGTAAATTGAAGTGTTTAAATGC
1 AATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGC
*
81406607 TGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAG
66 TGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTATTTAG
**
81406672 TTGTTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTT
131 TTACTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTT
*
81406725 AATTGAGGTGTTAAAGTGCTGTAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGC
1 AATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGC
*
81406790 TGTAAATTGAAGTGCTTAAATGTTGCAAATTAAAGTGTTTAAGTACTGCAAATTGAAGTATTTAG
66 TGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTATTTAG
81406855 TTACTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTT
131 TTACTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTT
* * * *
81406908 AATTGAGATGTTAAAGTGCTGCAAATTGAAGTGCTTAAATGCCGTAAATTGAAGTG-TTAAAGTG
1 AATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAA-TG
* * * * * * *
81406972 CTGCAAATTGAAGTGTTTGAATGTTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTA
65 CTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTA
81407033 CTTAAATGTT
Statistics
Matches: 286, Mismatches: 21, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
182 5 0.02
183 281 0.98
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (183 bp):
AATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGC
TGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTATTTAG
TTACTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTT
Found at i:81406799 original size:229 final size:228
Alignment explanation
Indices: 81406394--81407266 Score: 908
Period size: 229 Copynumber: 3.8 Consensus size: 228
81406384 ATATTAGTAG
* * * ** *
81406394 TAAATGTTGCAAATTGA-AGTGTTTAAGTATTGCAAATTGAAGTGTTTAGTTGCTG-GAAATTGA
1 TAAATGCTGCAAATTGAGA-TGTTTAA-TACTGCAAATTGAAGTGTATAAATGTTGTG-AATTGA
** * * * * * * *
81406457 GATGTTTTA-TCGTTG-TAATTGAGGTGTATAAATGTTGTTAATTCAAATGTTAAAGTGCTGCAA
63 GATGTTAAAGT-GCTGCAAATTGAAGTGT-TAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAA
* * * *
81406520 ATTGAAGTGTTTTAATGCTATAAATTGAAGTG-TTAAACTGCTGCAAATTGAAGTGTTTGAATGT
126 ATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAA-TGCTGCAAATTGAAGTGCTTAAATGT
* * * * *
81406584 TGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCT
190 TGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTT
* * **
81406623 TAAATGTTGCAAATTGA-AGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTGTTG-GACATTGA
1 TAAATGCTGCAAATTGAGA-TGTTTAA-TACTGCAAATTGAAGTGTATAAATGTTGTGA-ATTGA
** * * * * * *
81406686 GATGTTTTA-TCGCTG-TAATTGAGGTGTATAAATGTTGTTAATTGAGGTGTTAAAGTGCTGTAA
63 GATGTTAAAGT-GCTGCAAATTGAAGTGT-TAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAA
*
81406749 ATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTT
126 ATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGCTTAAATGTT
* *
81406814 GCAAATTAAAGTGTTTAAGTACTGCAAATTGAAGTATT
191 GCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTT
** * * * * * * * *
81406852 TAGTTACTGGACATTGAGATGTTTTATCGCTG-TAATTGAGGTGTATAAATGTTGTTAATTGAGA
1 TAAATGCTGCAAATTGAGATGTTTAAT-ACTGCAAATTGAAGTGTATAAATGTTGTGAATTGAGA
*
81406916 TGTTAAAGTGCTGCAAATTGAAGTGCTTAAATGCCGTAAATTGAAGTGTTAAAGTGCTGCAAATT
65 TGTTAAAGTGCTGCAAATTGAAGTG-TTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATT
* * *
81406981 GAAGTGTTTGAATGTTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTACTTAAATGTTGCA
129 GAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGCTTAAATGTTGCA
81407046 AATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTT
194 AATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTT
** * * * * *
81407081 TAGTTGCTGGACATTGAGATGTTTTAT-C-GCTATAATTGAGGTGTATAAATGTTGTTAATTGAG
1 TAAATGCTGCAAATTGAGATGTTTAATACTGC-A-AATTGAAGTGTATAAATGTTGTGAATTGAG
* *
81407144 ATGTTAAAGTGCTGCAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAA-TGCTGCAAA
64 ATGTTAAAGTGCTGCAAATTGAAGTGTTAAA-TGCTGTAAATTGAAGTG-TTAAAGTGCTGCAAA
* * * *
81407208 TTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAA
127 TTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGCTTAA
81407267 GTACTTATTT
Statistics
Matches: 573, Mismatches: 58, Indels: 26
0.87 0.09 0.04
Matches are distributed among these distances:
226 1 0.00
227 1 0.00
228 40 0.07
229 520 0.91
230 11 0.02
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.38
Consensus pattern (228 bp):
TAAATGCTGCAAATTGAGATGTTTAATACTGCAAATTGAAGTGTATAAATGTTGTGAATTGAGAT
GTTAAAGTGCTGCAAATTGAAGTGTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGA
AGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGCTTAAATGTTGCAAA
TTGAAGTGTTTAAGTACTGCAAATTGAAGTGTT
Found at i:81407993 original size:61 final size:61
Alignment explanation
Indices: 81407920--81408046 Score: 254
Period size: 61 Copynumber: 2.1 Consensus size: 61
81407910 AAGTGTATAG
81407920 TTTAAAGTTCAAATTTTAAAATTTAAACATAATATAATATTTACCATAGAAATAAATATTA
1 TTTAAAGTTCAAATTTTAAAATTTAAACATAATATAATATTTACCATAGAAATAAATATTA
81407981 TTTAAAGTTCAAATTTTAAAATTTAAACATAATATAATATTTACCATAGAAATAAATATTA
1 TTTAAAGTTCAAATTTTAAAATTTAAACATAATATAATATTTACCATAGAAATAAATATTA
81408042 TTTAA
1 TTTAA
81408047 TTAAAATAAT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 66 1.00
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.40
Consensus pattern (61 bp):
TTTAAAGTTCAAATTTTAAAATTTAAACATAATATAATATTTACCATAGAAATAAATATTA
Found at i:81408192 original size:43 final size:43
Alignment explanation
Indices: 81408155--81408255 Score: 168
Period size: 43 Copynumber: 2.4 Consensus size: 43
81408145 GCTAAAGGTT
*
81408155 ATGACTTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCC
1 ATGACTTTTAGCGGCGCTTTTCCCACAAACACCGCTAAAAGCC
* *
81408198 ATGACTTTTAGCAGCGCTTTTCTCACAAACACCGCTAAAAGCC
1 ATGACTTTTAGCGGCGCTTTTCCCACAAACACCGCTAAAAGCC
81408241 ATGACTTTT-GCGGCG
1 ATGACTTTTAGCGGCG
81408256 TTTCCTATAG
Statistics
Matches: 54, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
42 5 0.09
43 49 0.91
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (43 bp):
ATGACTTTTAGCGGCGCTTTTCCCACAAACACCGCTAAAAGCC
Found at i:81408640 original size:7 final size:7
Alignment explanation
Indices: 81408628--81408652 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
81408618 ATCTATATGA
81408628 ATGAAAT
1 ATGAAAT
81408635 ATGAAAT
1 ATGAAAT
81408642 ATGAAAT
1 ATGAAAT
81408649 ATGA
1 ATGA
81408653 TTATTAGATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.16, T:0.28
Consensus pattern (7 bp):
ATGAAAT
Found at i:81410408 original size:16 final size:17
Alignment explanation
Indices: 81410387--81410419 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
81410377 AAAAATTGTT
81410387 TTACTTTTC-TATATTA
1 TTACTTTTCGTATATTA
81410403 TTACTTTTCGTATATTA
1 TTACTTTTCGTATATTA
81410420 CTTCATGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.24, C:0.12, G:0.03, T:0.61
Consensus pattern (17 bp):
TTACTTTTCGTATATTA
Found at i:81410584 original size:21 final size:20
Alignment explanation
Indices: 81410550--81410605 Score: 51
Period size: 21 Copynumber: 2.7 Consensus size: 20
81410540 CCCATATACT
81410550 TTTATATTATATATATAAATTA
1 TTTAT-TTA-ATATATAAATTA
* *
81410572 TCTTATTTAATATGTATATTA
1 T-TTATTTAATATATAAATTA
*
81410593 TTT-TTTTATATAT
1 TTTATTTAATATAT
81410606 TTTTAAAAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
19 8 0.28
20 2 0.07
21 11 0.38
22 4 0.14
23 4 0.14
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (20 bp):
TTTATTTAATATATAAATTA
Found at i:81410656 original size:12 final size:13
Alignment explanation
Indices: 81410639--81410667 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
81410629 TATTAACCCC
81410639 TTTTTATTC-CCT
1 TTTTTATTCTCCT
81410651 TTTTTATTCTCCT
1 TTTTTATTCTCCT
81410664 TTTT
1 TTTT
81410668 GAAAAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTTTATTCTCCT
Found at i:81423138 original size:206 final size:205
Alignment explanation
Indices: 81422633--81423186 Score: 876
Period size: 205 Copynumber: 2.7 Consensus size: 205
81422623 CAGATCTGGT
* *
81422633 TGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTA
1 TGAAGC-AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTG
*
81422698 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
65 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * *
81422763 GAGCAGATCGAAGTTTGGCATCTCTATATTCGACGGAGGGCAGACACATAGCAGATCAACCTTCA
130 GAACAAATCGAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCAACCTTCA
*
81422828 GATGATTAGAC
195 GATGACTAGAC
* *
81422839 TGAAGTAGACCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAA-ATCATAGCTG
1 TGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGA-CATAGCTG
* * * *
81422903 ATTTAGCTTTCACGTGCTTATGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTTAGA
65 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* *
81422968 GAACAAATCGAAGTTTGGCGTCTCCATATTCGATGGAGGGCAGACACATAGCAGATCTAACCTTC
130 GAACAAATCGAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATC-AACCTTC
81423033 AGATGACTAGAC
194 AGATGACTAGAC
* * *
81423045 TGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCTGA
1 TGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGA
* * * *
81423110 TTTGGTTTTCGCTTGCTTACGCTGAAGCAAATTTAAGATGATTTGGCATCTCTGTATTGTCAGAG
66 TTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAG
81423175 AACAAATCGAAG
131 AACAAATCGAAG
81423187 AAGCAGATTT
Statistics
Matches: 317, Mismatches: 28, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
204 1 0.00
205 165 0.52
206 150 0.47
207 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (205 bp):
TGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGA
TTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAG
AACAAATCGAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCAACCTTCAG
ATGACTAGAC
Found at i:81423197 original size:43 final size:44
Alignment explanation
Indices: 81423149--81423231 Score: 114
Period size: 43 Copynumber: 1.9 Consensus size: 44
81423139 AATTTAAGAT
*
81423149 GATTTGGCATCTCTGTATT-GTCAGAGAACAAATCGAAGAAGCA
1 GATTTGGCATCTCTGTATTCGACAGAGAACAAATCGAAGAAGCA
* * * *
81423192 GATTTGGCGTCTCTGTGTTCGACAGAGAGCAGATCGAAGA
1 GATTTGGCATCTCTGTATTCGACAGAGAACAAATCGAAGA
81423232 TATCAACATG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
43 17 0.50
44 17 0.50
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (44 bp):
GATTTGGCATCTCTGTATTCGACAGAGAACAAATCGAAGAAGCA
Found at i:81424977 original size:16 final size:17
Alignment explanation
Indices: 81424956--81424988 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
81424946 AAAAATTGTT
81424956 TTACTTTTC-TATATTA
1 TTACTTTTCGTATATTA
81424972 TTACTTTTCGTATATTA
1 TTACTTTTCGTATATTA
81424989 CTTCATGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.24, C:0.12, G:0.03, T:0.61
Consensus pattern (17 bp):
TTACTTTTCGTATATTA
Found at i:81426318 original size:22 final size:22
Alignment explanation
Indices: 81426290--81426333 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
81426280 ATCACACCTA
81426290 AAAAGATTGGTGGCGACTCCCG
1 AAAAGATTGGTGGCGACTCCCG
81426312 AAAAGATTGGTGGCGACTCCCG
1 AAAAGATTGGTGGCGACTCCCG
81426334 TTTTCATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.23, G:0.32, T:0.18
Consensus pattern (22 bp):
AAAAGATTGGTGGCGACTCCCG
Found at i:81426991 original size:139 final size:139
Alignment explanation
Indices: 81426741--81427018 Score: 475
Period size: 139 Copynumber: 2.0 Consensus size: 139
81426731 GAAGATTTTG
* *
81426741 CTTGAGTAAATCGAAATGGATTCTAAAGACCTTCTTGCCCCGAAGTAATAAAATGTCACATCCAA
1 CTTGAGTAAATCGAAATGGATTCTAAAGACCTTCTTGCCACGAAGTAATAAAATGCCACATCCAA
* *
81426806 TATGTTAGGACACAACATTTCAGACCCTCGAGAATAAGTTGGTCTTTCGATTTTCAAAACTCACG
66 TACGTTAGGACACAACATTTCAGACCCACGAGAATAAGTTGGTCTTTCGATTTTCAAAACTCACG
81426871 TGTTTTAAT
131 TGTTTTAAT
* * * *
81426880 CTTGAGTAAATCGAAATGGATTTTAAAGACCTTCTTGTCACGAAGTAATAAAATGCCACGTCCAG
1 CTTGAGTAAATCGAAATGGATTCTAAAGACCTTCTTGCCACGAAGTAATAAAATGCCACATCCAA
*
81426945 TACGTTAGGACACAACATTTCAGACCCACGAGAATAAGTTGGTCTTTCGATTTTCAAAATTCACG
66 TACGTTAGGACACAACATTTCAGACCCACGAGAATAAGTTGGTCTTTCGATTTTCAAAACTCACG
81427010 TGTTTTAAT
131 TGTTTTAAT
81427019 TTTAGAAGGT
Statistics
Matches: 130, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
139 130 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (139 bp):
CTTGAGTAAATCGAAATGGATTCTAAAGACCTTCTTGCCACGAAGTAATAAAATGCCACATCCAA
TACGTTAGGACACAACATTTCAGACCCACGAGAATAAGTTGGTCTTTCGATTTTCAAAACTCACG
TGTTTTAAT
Found at i:81427542 original size:3 final size:3
Alignment explanation
Indices: 81427534--81427657 Score: 72
Period size: 3 Copynumber: 39.7 Consensus size: 3
81427524 AAAAACATAT
* * *
81427534 ATA ATA AT- ATG ACA ATA ATA ATA ACA ATA ATAA ATAA ATAA ATAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A AT-A AT-A AT-A ATA
* * * * * * *
81427582 ATG ATA ATA AAA ATA ATA GTA ATG ATA ATG GTA ATA ATAA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA
*
81427628 ATA ATA ACA ATA ATA CA-A ATA ATAA ATA AT
1 ATA ATA ATA ATA ATA -ATA ATA AT-A ATA AT
81427658 CTAAAGTTTG
Statistics
Matches: 94, Mismatches: 21, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
2 3 0.03
3 69 0.73
4 22 0.23
ACGTcount: A:0.63, C:0.03, G:0.06, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:81427829 original size:3 final size:3
Alignment explanation
Indices: 81427823--81427975 Score: 61
Period size: 3 Copynumber: 52.3 Consensus size: 3
81427813 AGAAGAAAAT
* * * *
81427823 ATA ATA ATA ATA GTA ATA AT- ACA ATA GTA ATA ATA ATA AAA AGGTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A--TA
* * * * *
81427869 ATA ATA AT- ATA TTA GATA GTA A-A A-A AAA ATA ACA GTA ATA A-A
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * *
81427911 A-A ATG ATA ATA GTG ATA TTA GTA ATA ATA ATA ACA AT- ATA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
81427957 ATA AT- ATA TATA TTA ATA A
1 ATA ATA ATA -ATA ATA ATA A
81427976 CGACAATAAT
Statistics
Matches: 108, Mismatches: 32, Indels: 20
0.68 0.20 0.12
Matches are distributed among these distances:
2 15 0.14
3 86 0.80
4 5 0.05
5 2 0.02
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:81427848 original size:17 final size:17
Alignment explanation
Indices: 81427828--81427877 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
81427818 AAAATATAAT
*
81427828 AATAATAGTAATAATAC
1 AATAATAATAATAATAC
*
81427845 AATAGTAATAATAATA-
1 AATAATAATAATAATAC
81427861 AA-AAGGTAATAATAATA
1 AATAA--TAATAATAATA
81427878 TATTAGATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
15 1 0.04
16 2 0.07
17 25 0.89
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.28
Consensus pattern (17 bp):
AATAATAATAATAATAC
Found at i:81427848 original size:20 final size:20
Alignment explanation
Indices: 81427820--81427861 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
81427810 AAAAGAAGAA
* *
81427820 AATATAATAATAATAGTAAT
1 AATACAATAATAATAATAAT
*
81427840 AATACAATAGTAATAATAAT
1 AATACAATAATAATAATAAT
81427860 AA
1 AA
81427862 AAAGGTAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (20 bp):
AATACAATAATAATAATAAT
Found at i:81427850 original size:14 final size:13
Alignment explanation
Indices: 81427819--81427858 Score: 57
Period size: 14 Copynumber: 3.2 Consensus size: 13
81427809 AAAAAGAAGA
81427819 AAATA-TAATAAT
1 AAATAGTAATAAT
81427831 -AATAGTAATAAT
1 AAATAGTAATAAT
81427843 ACAATAGTAATAAT
1 A-AATAGTAATAAT
81427857 AA
1 AA
81427859 TAAAAAGGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 4 0.16
12 7 0.28
13 1 0.04
14 13 0.52
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (13 bp):
AAATAGTAATAAT
Found at i:81428082 original size:13 final size:13
Alignment explanation
Indices: 81428051--81428106 Score: 53
Period size: 13 Copynumber: 4.2 Consensus size: 13
81428041 GGATAAATAG
*
81428051 AATAATAGAAAGT
1 AATAATAGAAAAT
81428064 AATAATA-AAAAT
1 AATAATAGAAAAT
*
81428076 AATTAATTTGAAAAT
1 AA-TAA-TAGAAAAT
81428091 AA-AATAGCAAAAT
1 AATAATAG-AAAAT
81428104 AAT
1 AAT
81428107 GAAAAGGGAC
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
12 8 0.23
13 19 0.54
14 1 0.03
15 7 0.20
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.27
Consensus pattern (13 bp):
AATAATAGAAAAT
Found at i:81432105 original size:121 final size:119
Alignment explanation
Indices: 81431881--81432105 Score: 267
Period size: 121 Copynumber: 1.9 Consensus size: 119
81431871 ATATACACAT
* * * *
81431881 AAATAGATTTAGAAGCAATTATTTGTAAAAATAACATGGAATTAATAATGCGTATAAGATTAAAT
1 AAATAGATTTAAAAGAAATTATATGTAAAAATAACATGGAATTAATAAT-CGTATAAGATAAAAT
* * * * *
81431946 TAATTTTATCATAAATTGTATATGTAATAGATTTTATAAACATAATTATGTATAC
65 CAACTTTATCATAAATTATATATATAATAGATTGTATAAACATAATTATGTATAC
* *
81432001 AAATAGATTTAAAAGAAATTATATGTATAAAATAACATGGATTTAATGAT-GTATATAGAATAAA
1 AAATAGATTTAAAAGAAATTATATGTA-AAAATAACATGGAATTAATAATCGTATA-AG-ATAAA
*
81432065 ATCAACTTTATCATGAATTATATACATATAATA-A-TGTATAA
63 ATCAACTTTATCATAAATTATAT--ATATAATAGATTGTATAA
81432106 GAACATTTAT
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
119 5 0.06
120 26 0.30
121 49 0.56
122 1 0.01
123 7 0.08
ACGTcount: A:0.48, C:0.05, G:0.10, T:0.37
Consensus pattern (119 bp):
AAATAGATTTAAAAGAAATTATATGTAAAAATAACATGGAATTAATAATCGTATAAGATAAAATC
AACTTTATCATAAATTATATATATAATAGATTGTATAAACATAATTATGTATAC
Found at i:81433157 original size:26 final size:26
Alignment explanation
Indices: 81433128--81433235 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
81433118 TGGTACAAAT
81433128 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
81433154 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
81433180 TGATAATGGGATAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
81433206 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81433232 TGAT
1 TGAT
81433236 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81440209 original size:26 final size:26
Alignment explanation
Indices: 81440180--81440287 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
81440170 TGGTACAAAT
* *
81440180 TGATAATGGGTTAGTTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
81440206 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81440232 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
81440258 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81440284 TGAT
1 TGAT
81440288 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81447233 original size:26 final size:26
Alignment explanation
Indices: 81447204--81447313 Score: 118
Period size: 26 Copynumber: 4.2 Consensus size: 26
81447194 TGGTACAAAT
81447204 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
81447230 TGATAATGGATTAGGTAAAATAATTCCA
1 TGATAATGGGTTAGGT-AAAT-GTTCCA
*
81447258 TAATAAATGGGTTAGGT-AATGTTCCA
1 TGAT-AATGGGTTAGGTAAATGTTCCA
*
81447284 TGA-AAT-GTTTAGGTTAAATGTTCCAA
1 TGATAATGGGTTAGG-TAAATGTTCC-A
81447310 TGAT
1 TGAT
81447314 GGGCATTTCA
Statistics
Matches: 70, Mismatches: 7, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
23 6 0.09
24 4 0.06
25 8 0.11
26 26 0.37
27 7 0.10
28 8 0.11
29 11 0.16
ACGTcount: A:0.35, C:0.07, G:0.22, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81451612 original size:21 final size:24
Alignment explanation
Indices: 81451577--81451627 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 24
81451567 AAATAAGATG
81451577 ATAAT-AAATAAT-AA-AGTAAAA
1 ATAATAAAATAATAAACAGTAAAA
*
81451598 A-AATAAAATAGTAAACAGTAAAA
1 ATAATAAAATAATAAACAGTAAAA
81451621 ATAATAA
1 ATAATAA
81451628 TGCAACAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 3 0.12
21 7 0.28
22 2 0.08
23 8 0.32
24 5 0.20
ACGTcount: A:0.71, C:0.02, G:0.06, T:0.22
Consensus pattern (24 bp):
ATAATAAAATAATAAACAGTAAAA
Found at i:81679819 original size:26 final size:26
Alignment explanation
Indices: 81679789--81679896 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
81679779 TGGAATGCCC
81679789 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
81679815 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
81679841 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
81679867 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
81679893 ATCA
1 ATCA
81679897 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:81683749 original size:12 final size:12
Alignment explanation
Indices: 81683727--81683761 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
81683717 TTAGGCCCCT
*
81683727 CCACAGCCTCTA
1 CCACGGCCTCTA
*
81683739 TCACGGCCTCTA
1 CCACGGCCTCTA
81683751 CCACGGCCTCT
1 CCACGGCCTCT
81683762 TATACCCTGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.17, C:0.49, G:0.14, T:0.20
Consensus pattern (12 bp):
CCACGGCCTCTA
Found at i:81690997 original size:86 final size:86
Alignment explanation
Indices: 81690852--81691023 Score: 344
Period size: 86 Copynumber: 2.0 Consensus size: 86
81690842 AACATTAGGA
81690852 TTAGTGGGATTGAACTAGATTAAATTTACTTAAACCAAATGAATTAAATTTTAATAAAGTATATA
1 TTAGTGGGATTGAACTAGATTAAATTTACTTAAACCAAATGAATTAAATTTTAATAAAGTATATA
81690917 AGTTAAATAAGTGGAGAGAAT
66 AGTTAAATAAGTGGAGAGAAT
81690938 TTAGTGGGATTGAACTAGATTAAATTTACTTAAACCAAATGAATTAAATTTTAATAAAGTATATA
1 TTAGTGGGATTGAACTAGATTAAATTTACTTAAACCAAATGAATTAAATTTTAATAAAGTATATA
81691003 AGTTAAATAAGTGGAGAGAAT
66 AGTTAAATAAGTGGAGAGAAT
81691024 AGTGTCATCT
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
86 86 1.00
ACGTcount: A:0.45, C:0.05, G:0.16, T:0.34
Consensus pattern (86 bp):
TTAGTGGGATTGAACTAGATTAAATTTACTTAAACCAAATGAATTAAATTTTAATAAAGTATATA
AGTTAAATAAGTGGAGAGAAT
Found at i:81703181 original size:326 final size:326
Alignment explanation
Indices: 81702588--81703248 Score: 873
Period size: 326 Copynumber: 2.0 Consensus size: 326
81702578 CTTTCTCTCC
* * * * *
81702588 CTATAAATATATGACACTTGTAAGGCTAAAAATACACAATTTTGAGATATTGTTAATTTGCCCGA
1 CTATAAATAAATAACACTTGCAAGGCTAAAAATACACAATTTTGAAATATTGTTAATTTGCCCAA
* *
81702653 AAATAGTGAGAATTTATTTTCTAAATATAAATTCTATTTTTAAGGAACAACAATGCTACCGATTT
66 AAATAGTAAGAATTTATTTTCTAAATATAAATTCTATTTTTAAGGAACAACAATGCTACCAATTT
* * * * *
81702718 CTATTGAAAAAGAATTACTTTCCTACTAAAAGTAAGAAATTGTTTCTAGTTCTATGTTTCATTTG
131 CCATTGAAAAAGAAGTAATTTCCTAATAAAAGTAAGAAATTGTTTCTAGTTCTATATTTCATTTG
* * * **
81702783 TGATTGTTTGAGCCCACACTTGGAGTGATGTGTGGTTCGAGAATAACAGAGAAGGTCATTCGCTA
196 TGATTGTTCGAGCCCACACTCGAAGTGATGTGTGGTTCGAGAATAACAGAGAAGGTCATTCAATA
* **
81702848 GAAAGCCGTGAATGTCTAGGAT-T-CATCT-CACTCAAAGCATAGGTACTTTTTGAGAAAACTTT
261 GAAAGCCGAGAACATCTAGGATCTGCAT-TGCA--CAAAGCATAGGTACTTTTTGAGAAAACTTT
*
81702910 ATTG
323 ATTA
* *
81702914 CTATAAATAAATAACACTTGCAGGGCTAAAAATACACAATTTTGAAATATTGTTATTTTGCCCAA
1 CTATAAATAAATAACACTTGCAAGGCTAAAAATACACAATTTTGAAATATTGTTAATTTGCCCAA
* * * *
81702979 AAATAGTAAGAATTTATTTTCTAAGTATAAATTCTATTTTTAAGGAACAACAATGTTGCTAATTT
66 AAATAGTAAGAATTTATTTTCTAAATATAAATTCTATTTTTAAGGAACAACAATGCTACCAATTT
* * * *
81703044 CCATTGAAAGAA-AAGTAATTTCCTAATGAAAGTAAGAAATTGTTTCTGGTTCTGTATTTGATTT
131 CCATTGAAA-AAGAAGTAATTTCCTAATAAAAGTAAGAAATTGTTTCTAGTTCTATATTTCATTT
* * * **
81703108 GTGATTGTTCGAGCCC-CTACTCGAAGTGATTTGTTGTTCGAGAATAGCAGAGAAGGTTGTTCAA
195 GTGATTGTTCGAGCCCAC-ACTCGAAGTGATGTGTGGTTCGAGAATAACAGAGAAGGTCATTCAA
* * * *
81703172 TCGAAAGCCGAGAACATTTAGGATCTGCCTTGCACAAAGCATAGGTACTTTTTGAGAAAAGTTTA
259 TAGAAAGCCGAGAACATCTAGGATCTGCATTGCACAAAGCATAGGTACTTTTTGAGAAAACTTTA
81703237 TTA
324 TTA
*
81703240 TTATAAATA
1 CTATAAATA
81703249 TCACAAACAG
Statistics
Matches: 289, Mismatches: 41, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
325 1 0.00
326 280 0.97
327 4 0.01
328 4 0.01
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (326 bp):
CTATAAATAAATAACACTTGCAAGGCTAAAAATACACAATTTTGAAATATTGTTAATTTGCCCAA
AAATAGTAAGAATTTATTTTCTAAATATAAATTCTATTTTTAAGGAACAACAATGCTACCAATTT
CCATTGAAAAAGAAGTAATTTCCTAATAAAAGTAAGAAATTGTTTCTAGTTCTATATTTCATTTG
TGATTGTTCGAGCCCACACTCGAAGTGATGTGTGGTTCGAGAATAACAGAGAAGGTCATTCAATA
GAAAGCCGAGAACATCTAGGATCTGCATTGCACAAAGCATAGGTACTTTTTGAGAAAACTTTATT
A
Found at i:81711319 original size:105 final size:105
Alignment explanation
Indices: 81711135--81711348 Score: 311
Period size: 105 Copynumber: 2.0 Consensus size: 105
81711125 GAACTTTTCT
** * * *
81711135 TTTATCCAAGTTAGTCCTTGGACTTGGCAATAAACTAAGAAATTATTTATCCAATCAAAATAGTC
1 TTTATCCAAGTTAGTCCTTAAACTTGACAATAAACTAAAAAATTATTTATCCAATCAAAATAATC
* * * * * *
81711200 GAAATGATAGCATTTTAAAAATGGATCAAATGAAAATAAA
66 AAAATGATAACATTTTAAAAATGAAACAAAAGAAAACAAA
*
81711240 TTTATCCAAGTTAGTCTTTAAACTTGACAATAAACTAAAAAATTATTTATCCAATCAAAATAATC
1 TTTATCCAAGTTAGTCCTTAAACTTGACAATAAACTAAAAAATTATTTATCCAATCAAAATAATC
*
81711305 AAAATGCTAACATTTTAAAAATGAAACAAAAGAAAACAAA
66 AAAATGATAACATTTTAAAAATGAAACAAAAGAAAACAAA
81711345 TTTA
1 TTTA
81711349 AAATATTATC
Statistics
Matches: 96, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
105 96 1.00
ACGTcount: A:0.48, C:0.13, G:0.09, T:0.30
Consensus pattern (105 bp):
TTTATCCAAGTTAGTCCTTAAACTTGACAATAAACTAAAAAATTATTTATCCAATCAAAATAATC
AAAATGATAACATTTTAAAAATGAAACAAAAGAAAACAAA
Found at i:81718078 original size:20 final size:20
Alignment explanation
Indices: 81718044--81718081 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
81718034 TGACCACTTC
81718044 GTAACAAAATGATAACATAA
1 GTAACAAAATGATAACATAA
81718064 GTAACTAAAAT-ATAACAT
1 GTAAC-AAAATGATAACAT
81718082 TTTAAATAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.58, C:0.11, G:0.08, T:0.24
Consensus pattern (20 bp):
GTAACAAAATGATAACATAA
Found at i:81718769 original size:7 final size:7
Alignment explanation
Indices: 81718726--81718775 Score: 50
Period size: 7 Copynumber: 7.3 Consensus size: 7
81718716 TTCCAAACTT
81718726 ATTTT-A
1 ATTTTCA
*
81718732 ATCTTCAA
1 ATTTTC-A
81718740 ATTTTC-
1 ATTTTCA
81718746 ATTTTCA
1 ATTTTCA
*
81718753 TTTTTCA
1 ATTTTCA
*
81718760 ATTTTGA
1 ATTTTCA
81718767 ATTTTCA
1 ATTTTCA
81718774 AT
1 AT
81718776 CCTCAATTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
6 10 0.29
7 19 0.54
8 6 0.17
ACGTcount: A:0.28, C:0.12, G:0.02, T:0.58
Consensus pattern (7 bp):
ATTTTCA
Found at i:81720405 original size:23 final size:23
Alignment explanation
Indices: 81720379--81720503 Score: 71
Period size: 23 Copynumber: 5.3 Consensus size: 23
81720369 CTGAAGAATA
81720379 GTAAGCTCTATTGAGCTAAAACG
1 GTAAGCTCTATTGAGCTAAAACG
* *
81720402 GTAAGCTCTATCGAGCT-GAACAG
1 GTAAGCTCTATTGAGCTAAAAC-G
* **
81720425 G-AAGCTC-ATTTGAGCTGAAATA
1 GTAAGCTCTA-TTGAGCTAAAACG
* * *
81720447 GTAAGCTC-ATTTGAGTTGAAACA
1 GTAAGCTCTA-TTGAGCTAAAACG
*
81720470 GTAAGCTCCTA-CGAGCTAATATATCG
1 GTAAGCT-CTATTGAGCTAA-A-A-CG
81720496 GTAAGCTC
1 GTAAGCTC
81720504 ATACGAATTG
Statistics
Matches: 81, Mismatches: 12, Indels: 16
0.74 0.11 0.15
Matches are distributed among these distances:
21 1 0.01
22 16 0.20
23 51 0.63
24 2 0.02
25 3 0.04
26 8 0.10
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.26
Consensus pattern (23 bp):
GTAAGCTCTATTGAGCTAAAACG
Found at i:81720439 original size:22 final size:23
Alignment explanation
Indices: 81720351--81720477 Score: 116
Period size: 23 Copynumber: 5.4 Consensus size: 23
81720341 GAGCCATGAT
*
81720351 CAGTAAGCTCCTCTTGAGCTGAAGAA
1 CAGTAAGCTCAT-TTGAGCTG-A-AA
* *
81720377 TAGTAAGCTC-TATTGAGCTAAAA
1 CAGTAAGCTCAT-TTGAGCTGAAA
* *
81720400 CGGTAAGCTC-TATCGAGCTG-AA
1 CAGTAAGCTCAT-TTGAGCTGAAA
*
81720422 CAGGAAGCTCATTTGAGCTGAAA
1 CAGTAAGCTCATTTGAGCTGAAA
* *
81720445 TAGTAAGCTCATTTGAGTTGAAA
1 CAGTAAGCTCATTTGAGCTGAAA
81720468 CAGTAAGCTC
1 CAGTAAGCTC
81720478 CTACGAGCTA
Statistics
Matches: 85, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
22 17 0.20
23 50 0.59
24 1 0.01
25 8 0.09
26 9 0.11
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (23 bp):
CAGTAAGCTCATTTGAGCTGAAA
Found at i:81720461 original size:68 final size:71
Alignment explanation
Indices: 81720355--81720486 Score: 175
Period size: 68 Copynumber: 1.9 Consensus size: 71
81720345 CATGATCAGT
* *
81720355 AAGCTCCTCTTGAGCTGAAGAATAGTAAGCTCTATTGAGCTAAAACGGTAAGCT-CTATCGAGCT
1 AAGCTCATCTTGAGCTGAAGAATAGTAAGCTCTATTGAGCTAAAACAGTAAGCTCCTA-CGAGCT
81720419 GAACAGG
65 GAACAGG
* *
81720426 AAGCTCAT-TTGAGCTG-A-AATAGTAAGCTC-ATTTGAGTTGAAACAGTAAGCTCCTACGAGCT
1 AAGCTCATCTTGAGCTGAAGAATAGTAAGCTCTA-TTGAGCTAAAACAGTAAGCTCCTACGAGCT
81720487 AATATATCGG
Statistics
Matches: 55, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
67 1 0.02
68 35 0.64
69 4 0.07
70 8 0.15
71 7 0.13
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.26
Consensus pattern (71 bp):
AAGCTCATCTTGAGCTGAAGAATAGTAAGCTCTATTGAGCTAAAACAGTAAGCTCCTACGAGCTG
AACAGG
Found at i:81720850 original size:16 final size:15
Alignment explanation
Indices: 81720825--81720859 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
81720815 CTATATTTTA
81720825 TCAAATTCAATACAT
1 TCAAATTCAATACAT
*
81720840 TCAACATTCAATATAT
1 TCAA-ATTCAATACAT
81720856 TCAA
1 TCAA
81720860 TTTAATCCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (15 bp):
TCAAATTCAATACAT
Found at i:81721899 original size:25 final size:24
Alignment explanation
Indices: 81721843--81721907 Score: 64
Period size: 25 Copynumber: 2.8 Consensus size: 24
81721833 GCAAGAAAAT
*
81721843 TTATTAAATTATT-T-TCATTTAA
1 TTATTAAATTATTATGTTATTTAA
*
81721865 ATAGTT-AATTATTATGTTATTTAGA
1 TTA-TTAAATTATTATGTTATTTA-A
*
81721890 TTATTAAATTTTTATGTT
1 TTATTAAATTATTATGTT
81721908 TATATACTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
22 9 0.26
23 3 0.09
24 8 0.24
25 14 0.41
ACGTcount: A:0.34, C:0.02, G:0.06, T:0.58
Consensus pattern (24 bp):
TTATTAAATTATTATGTTATTTAA
Found at i:81727108 original size:22 final size:24
Alignment explanation
Indices: 81727082--81727129 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
81727072 TCAAAACTTC
*
81727082 AAATA-TATTTTATTAT-TAAATT
1 AAATATTATTTTATTATAAAAATT
*
81727104 AAATATTATTTTTTTATAAAAATT
1 AAATATTATTTTATTATAAAAATT
81727128 AA
1 AA
81727130 TTGTATTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 5 0.23
23 10 0.45
24 7 0.32
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (24 bp):
AAATATTATTTTATTATAAAAATT
Found at i:81728030 original size:24 final size:25
Alignment explanation
Indices: 81727997--81728052 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
81727987 TCTCATTTAA
*
81727997 TTAATAAATATA-TATTTTA-AAAAT
1 TTAA-AAATATATTATTTAATAAAAT
81728021 TATAAAAATATATTATTTAATAAAAT
1 T-TAAAAATATATTATTTAATAAAAT
81728047 TTAAAA
1 TTAAAA
81728053 GCAAACACGT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
24 8 0.29
25 14 0.50
26 6 0.21
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (25 bp):
TTAAAAATATATTATTTAATAAAAT
Found at i:81728592 original size:21 final size:21
Alignment explanation
Indices: 81728567--81728635 Score: 59
Period size: 21 Copynumber: 3.1 Consensus size: 21
81728557 TTCAATCTTA
81728567 TTTCAATCTTCAAATTTTAAT
1 TTTCAATCTTCAAATTTTAAT
* * *
81728588 TTTCAATTTTC-AATTTCGAAA
1 TTTCAATCTTCAAATTT-TAAT
*
81728609 TTTCAATCCTCAATTATTTTTAAT
1 TTTCAATCTTCAA--A-TTTTAAT
81728633 TTT
1 TTT
81728636 TTTTGAATTT
Statistics
Matches: 36, Mismatches: 7, Indels: 7
0.72 0.14 0.14
Matches are distributed among these distances:
20 5 0.14
21 21 0.58
22 1 0.03
24 6 0.17
25 3 0.08
ACGTcount: A:0.30, C:0.14, G:0.01, T:0.54
Consensus pattern (21 bp):
TTTCAATCTTCAAATTTTAAT
Found at i:81728612 original size:14 final size:13
Alignment explanation
Indices: 81728566--81728615 Score: 55
Period size: 14 Copynumber: 3.6 Consensus size: 13
81728556 TTTCAATCTT
81728566 ATTTCAATCTTCAA
1 ATTTCAAT-TTCAA
*
81728580 ATTTTAATTTTCAA
1 ATTTCAA-TTTCAA
*
81728594 TTTTCAATTTCGAA
1 ATTTCAATTTC-AA
81728608 ATTTCAAT
1 ATTTCAAT
81728616 CCTCAATTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
13 4 0.13
14 25 0.83
15 1 0.03
ACGTcount: A:0.34, C:0.14, G:0.02, T:0.50
Consensus pattern (13 bp):
ATTTCAATTTCAA
Found at i:81733401 original size:29 final size:28
Alignment explanation
Indices: 81733368--81733423 Score: 85
Period size: 29 Copynumber: 2.0 Consensus size: 28
81733358 AAAAAAGTTA
81733368 AAATCGAAGAGTTTCATCGTCTTTTTTTT
1 AAATCGAAGAGTTTCATCGT-TTTTTTTT
* *
81733397 AAATCGAAGGGTTTTATCGTTTTTTTT
1 AAATCGAAGAGTTTCATCGTTTTTTTT
81733424 CTTTTTAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 7 0.28
29 18 0.72
ACGTcount: A:0.23, C:0.11, G:0.16, T:0.50
Consensus pattern (28 bp):
AAATCGAAGAGTTTCATCGTTTTTTTTT
Found at i:81735746 original size:37 final size:37
Alignment explanation
Indices: 81735687--81735795 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
81735677 AGCTCAGACG
* *
81735687 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
81735724 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
81735761 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
81735796 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:81735997 original size:48 final size:48
Alignment explanation
Indices: 81735942--81736076 Score: 243
Period size: 48 Copynumber: 2.8 Consensus size: 48
81735932 GCACATCGCC
81735942 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
81735990 TACATATTTCACACTAGCCATTCGGCTTTACCACATATGCATGTCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
*
81736038 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATA
81736077 TGCATGTTTA
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 83 1.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:81736118 original size:22 final size:22
Alignment explanation
Indices: 81736092--81736214 Score: 60
Period size: 22 Copynumber: 5.3 Consensus size: 22
81736082 GTTTATATTC
81736092 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
81736114 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
81736138 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* *
81736161 ATCACATACAT-G-CATGTTC-ACATT
1 ATCACAT---TGGCCA--TTCGGCCTT
81736185 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
81736208 ATCACAT
1 ATCACAT
81736215 ATATGCACAT
Statistics
Matches: 75, Mismatches: 8, Indels: 36
0.63 0.07 0.30
Matches are distributed among these distances:
22 23 0.31
23 18 0.24
24 18 0.24
25 16 0.21
ACGTcount: A:0.25, C:0.31, G:0.13, T:0.31
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:81736125 original size:47 final size:47
Alignment explanation
Indices: 81736046--81736239 Score: 298
Period size: 47 Copynumber: 4.1 Consensus size: 47
81736036 CATACATATT
* * * * *
81736046 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTTATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
81736093 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
81736140 TCACATTGGCCATTCGGCCTTATCACATACATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
**
81736187 TCACATTGGCCATTCGGCCTTATCACATATATGCACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
81736234 TCACAT
1 TCACAT
81736240 AAAATTCTAA
Statistics
Matches: 134, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 134 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:81736174 original size:94 final size:94
Alignment explanation
Indices: 81736006--81736239 Score: 303
Period size: 94 Copynumber: 2.5 Consensus size: 94
81735996 TTTCACACTA
* * *
81736006 GCCATTCGGCTTTA-C-CACATATGCATGTCTCATACATAT-TTCACATTAGCCATTCGGCTTTA
1 GCCATTCGGCCTTATCACACATATGCATG-CTC--ACAT-TCATCACATTAGCCATTCGGCCTTA
* * *
81736068 CCACATATATGCATGTTTATATTCATCACATTG
62 CCACATACATGCATGTTCACATTCATCACATTG
* *
81736101 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTAGCCATTCGGCCTTACCAC
81736166 ATACATGCATGTTCACATTCATCACATTG
66 ATACATGCATGTTCACATTCATCACATTG
* ***
81736195 GCCATTCGGCCTTATCACATATATGCACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACAT
81736240 AAAATTCTAA
Statistics
Matches: 124, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
93 1 0.01
94 94 0.76
95 13 0.10
96 4 0.03
97 12 0.10
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (94 bp):
GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTAGCCATTCGGCCTTACCAC
ATACATGCATGTTCACATTCATCACATTG
Found at i:81736236 original size:25 final size:25
Alignment explanation
Indices: 81736161--81736240 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
81736151 ATTCGGCCTT
* **
81736161 ATCACATACATGCATGTTCACATTC
1 ATCACATATATGCACATTCACATTC
* * *
81736186 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACATTC-ACATTC
81736208 ATCACATATATGCACATTCACATTC
1 ATCACATATATGCACATTCACATTC
81736233 ATCACATA
1 ATCACATA
81736241 AAATTCTAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 10 0.24
23 6 0.15
24 5 0.12
25 20 0.49
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.31
Consensus pattern (25 bp):
ATCACATATATGCACATTCACATTC
Found at i:81739856 original size:17 final size:17
Alignment explanation
Indices: 81739836--81739924 Score: 94
Period size: 17 Copynumber: 5.2 Consensus size: 17
81739826 AGCTCACTCC
81739836 TTTGGTGAGCTTGCACA
1 TTTGGTGAGCTTGCACA
81739853 TTTGGTGAGCTTGCA-A
1 TTTGGTGAGCTTGCACA
*
81739869 CTTTGGTGAGCTCGCACA
1 -TTTGGTGAGCTTGCACA
* *
81739887 TTTGATGA-CCT-CACA
1 TTTGGTGAGCTTGCACA
*
81739902 GTTTTGGTGAGCTTGCATA
1 --TTTGGTGAGCTTGCACA
81739921 TTTG
1 TTTG
81739925 TTAGGCTCGC
Statistics
Matches: 59, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
15 4 0.07
16 2 0.03
17 47 0.80
18 3 0.05
19 3 0.05
ACGTcount: A:0.18, C:0.18, G:0.27, T:0.37
Consensus pattern (17 bp):
TTTGGTGAGCTTGCACA
Found at i:81739878 original size:34 final size:34
Alignment explanation
Indices: 81739835--81739924 Score: 108
Period size: 34 Copynumber: 2.6 Consensus size: 34
81739825 AAGCTCACTC
* * **
81739835 CTTTGGTGAGCTTGCACATTTGGTGAGCTTGCAA
1 CTTTGGTGAGCTTGCACATTTGATGACCTCACAA
* *
81739869 CTTTGGTGAGCTCGCACATTTGATGACCTCACAG
1 CTTTGGTGAGCTTGCACATTTGATGACCTCACAA
* *
81739903 TTTTGGTGAGCTTGCATATTTG
1 CTTTGGTGAGCTTGCACATTTG
81739925 TTAGGCTCGC
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 47 1.00
ACGTcount: A:0.18, C:0.19, G:0.27, T:0.37
Consensus pattern (34 bp):
CTTTGGTGAGCTTGCACATTTGATGACCTCACAA
Found at i:81739936 original size:17 final size:18
Alignment explanation
Indices: 81739875--81740013 Score: 58
Period size: 18 Copynumber: 7.9 Consensus size: 18
81739865 GCAACTTTGG
*
81739875 TGAGCTCGCACATTTGA-
1 TGAGCTCGCATATTTGAT
* * *
81739892 TGACCTCACAGT-TTTG-G
1 TGAGCTCGCA-TATTTGAT
*
81739909 TGAGCTTGCATATTTG-T
1 TGAGCTCGCATATTTGAT
*
81739926 T-AGGCTCGCATCTTTGAT
1 TGA-GCTCGCATATTTGAT
*
81739944 TGAGCTCGTATATTTGGA-
1 TGAGCTCGCATATTT-GAT
* *
81739962 CGAGCTCGCATCTTTGGA-
1 TGAGCTCGCATATTT-GAT
* * * **
81739980 TGAGTTCGTATCTTTGGG
1 TGAGCTCGCATATTTGAT
*
81739998 TGAGCTCGCATCTTTG
1 TGAGCTCGCATATTTG
81740014 TGATCTATGT
Statistics
Matches: 94, Mismatches: 20, Indels: 15
0.73 0.16 0.12
Matches are distributed among these distances:
16 2 0.02
17 36 0.38
18 53 0.56
19 3 0.03
ACGTcount: A:0.17, C:0.19, G:0.26, T:0.37
Consensus pattern (18 bp):
TGAGCTCGCATATTTGAT
Found at i:81739966 original size:18 final size:18
Alignment explanation
Indices: 81739945--81740013 Score: 75
Period size: 18 Copynumber: 3.8 Consensus size: 18
81739935 ATCTTTGATT
*
81739945 GAGCTCGTATATTTGGAC
1 GAGCTCGTATCTTTGGAC
* *
81739963 GAGCTCGCATCTTTGGAT
1 GAGCTCGTATCTTTGGAC
* **
81739981 GAGTTCGTATCTTTGGGT
1 GAGCTCGTATCTTTGGAC
*
81739999 GAGCTCGCATCTTTG
1 GAGCTCGTATCTTTG
81740014 TGATCTATGT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 43 1.00
ACGTcount: A:0.16, C:0.19, G:0.29, T:0.36
Consensus pattern (18 bp):
GAGCTCGTATCTTTGGAC
Found at i:81739976 original size:36 final size:35
Alignment explanation
Indices: 81739929--81740013 Score: 116
Period size: 36 Copynumber: 2.4 Consensus size: 35
81739919 TATTTGTTAG
81739929 GCTCGCATCTTTGATTGAGCTCGTATATTTGGACGA
1 GCTCGCATCTTTGA-TGAGCTCGTATATTTGGACGA
* * **
81739965 GCTCGCATCTTTGGATGAGTTCGTATCTTTGGGTGA
1 GCTCGCATCTTT-GATGAGCTCGTATATTTGGACGA
81740001 GCTCGCATCTTTG
1 GCTCGCATCTTTG
81740014 TGATCTATGT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
35 1 0.02
36 41 0.93
37 2 0.05
ACGTcount: A:0.15, C:0.20, G:0.27, T:0.38
Consensus pattern (35 bp):
GCTCGCATCTTTGATGAGCTCGTATATTTGGACGA
Found at i:81742372 original size:21 final size:22
Alignment explanation
Indices: 81742348--81742403 Score: 98
Period size: 21 Copynumber: 2.6 Consensus size: 22
81742338 CACCATTGTT
81742348 TCTAATCTCACTGCTACAGT-A
1 TCTAATCTCACTGCTACAGTAA
81742369 TCTAATCTCACTGCTACAGTAA
1 TCTAATCTCACTGCTACAGTAA
81742391 T-TAATCTCACTGC
1 TCTAATCTCACTGC
81742404 CACCGCTATT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 32 0.94
22 2 0.06
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (22 bp):
TCTAATCTCACTGCTACAGTAA
Found at i:81757833 original size:19 final size:19
Alignment explanation
Indices: 81757798--81757856 Score: 68
Period size: 19 Copynumber: 3.1 Consensus size: 19
81757788 TTTAAAAAAA
*
81757798 TATAAAT-TTTAGAATTTT
1 TATAAATATTTTGAATTTT
81757816 TATAAATATTTTGAATTTT
1 TATAAATATTTTGAATTTT
81757835 TGA-AAATTATTTTGAATATTT
1 T-ATAAA-TATTTTGAAT-TTT
81757856 T
1 T
81757857 TGTAATTTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
18 7 0.19
19 14 0.39
20 11 0.31
21 4 0.11
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:81757835 original size:20 final size:20
Alignment explanation
Indices: 81757798--81757857 Score: 63
Period size: 20 Copynumber: 3.0 Consensus size: 20
81757788 TTTAAAAAAA
*
81757798 TATAAAT-TTTAGAA-TTTT
1 TATAAATATTTTGAATTTTT
81757816 TATAAATATTTTGAATTTTT
1 TATAAATATTTTGAATTTTT
*
81757836 GA-AAATTATTTTGAATATTTT
1 TATAAA-TATTTTGAAT-TTTT
81757857 T
1 T
81757858 GTAATTTTTG
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
18 7 0.20
19 9 0.26
20 15 0.43
21 4 0.11
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.57
Consensus pattern (20 bp):
TATAAATATTTTGAATTTTT
Found at i:81761956 original size:40 final size:40
Alignment explanation
Indices: 81761844--81762059 Score: 214
Period size: 39 Copynumber: 5.5 Consensus size: 40
81761834 CGGATGATAA
* *
81761844 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAA-TGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTATTATA-T
* * *
81761884 CCGGGCTAA-ACCTGAAGGCAATTGTGCAAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTATTATAT
* *
81761923 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTATTGA-A-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTATT-ATAT
* * *
81761962 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTATTATAT
*
81762002 CCGGG-TCAAGTCCCGAAGGCATTTGAGCAAG-TAGTTATAT
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCAAGTTA-TTATAT
* *
81762042 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
81762060 TACTTGGGTT
Statistics
Matches: 149, Mismatches: 18, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
38 3 0.02
39 79 0.53
40 66 0.44
41 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTATTATAT
Found at i:81761980 original size:79 final size:78
Alignment explanation
Indices: 81761840--81762024 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 78
81761830 TATTCGGATG
* * *
81761840 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAATGACTAATTCCGGGCTAAACCTGAAGGCAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTGGTGCGAATGACTAA-TCCGGGCTAAACCCGAAGGCAA
*
81761905 TTGTGCAAGTTATT
65 TTGTGCAAGTTACT
* * * * *
81761919 ATATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTATTGAA-CCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTGGTGCGAATGACT-AATCCGGGCTAA-ACCCGAAGGCA
* *
81761983 TTTGTGCGAGTTACT
64 ATTGTGCAAGTTACT
81761998 ATAACCGGG-TCAAGTCCCGAAGGCATT
1 ATAACCGGGCT-AAGTCCCGAAGGCATT
81762025 TGAGCAAGTA
Statistics
Matches: 91, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
78 10 0.11
79 79 0.87
80 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTGGTGCGAATGACTAATCCGGGCTAAACCCGAAGGCAAT
TGTGCAAGTTACT
Found at i:81762048 original size:79 final size:79
Alignment explanation
Indices: 81761840--81762059 Score: 220
Period size: 79 Copynumber: 2.8 Consensus size: 79
81761830 TATTCGGATG
* * * *
81761840 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAA-TGACTAAT-TCCGGGCTAAACCTGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGT-AGTTATATCCGGGCTAATCCCGAAGGC
*
81761903 AATTGTGCAAGTTATT
64 AATTGTGCAAGTTACT
* * *
81761919 ATATCCGGGCTAAGTCCCGAAGGCATTGGTGC--G-AGTTATTGAACCGGGCTAAGTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGTTA-T-ATCCGGGCTAA-TCCCGAAGG
* *
81761981 CATTTGTGCGAGTTACT
63 CAATTGTGCAAGTTACT
* *
81761998 ATAACCGGG-TCAAGTCCCGAAGGCATTTGAGCAAGTAGTTATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCT-AAGTCCCGAAGGCATTTGTGCAAGTAGTTATATCCGGGCT-AATCCCGAAGG
81762060 TACTTGGGTT
Statistics
Matches: 116, Mismatches: 15, Indels: 20
0.77 0.10 0.13
Matches are distributed among these distances:
75 3 0.03
76 1 0.01
78 10 0.09
79 90 0.78
80 5 0.04
81 2 0.02
82 5 0.04
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGTTATATCCGGGCTAATCCCGAAGGCAA
TTGTGCAAGTTACT
Found at i:81775205 original size:36 final size:33
Alignment explanation
Indices: 81775145--81775210 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 33
81775135 ACATATGTAA
*
81775145 TAATGTGTCATATTATAGCAAGGATAAAATATG
1 TAATGTGTCATATTATAGAAAGGATAAAATATG
*
81775178 TAATGTGTCATGTTATAGTAAGGAGGATAAAAT
1 TAATGTGTCATATTATAG-AA--AGGATAAAAT
81775211 GTGAACTTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 17 0.61
34 1 0.04
36 10 0.36
ACGTcount: A:0.41, C:0.05, G:0.21, T:0.33
Consensus pattern (33 bp):
TAATGTGTCATATTATAGAAAGGATAAAATATG
Found at i:81784013 original size:50 final size:50
Alignment explanation
Indices: 81783938--81784132 Score: 266
Period size: 50 Copynumber: 3.9 Consensus size: 50
81783928 AAGGGTAAGA
* * *
81783938 TGCCGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATTGG
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCGG
* *
81783988 TGCCGATGCCATGTCCCAAACATGGTCTTACGCTGGCTCTCATATATCGA
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCGG
* * *
81784038 T-CTCGATGCCATGTACCAGACATGGTCTTACACTAGCTCTCATATATCGG
1 TGC-CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCGG
* * * *
81784088 TGCTGATGCCATATCCGAAACATGGTCTTACACTGGCTCACATAT
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAT
81784133 TGCCCTAGTA
Statistics
Matches: 126, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
49 1 0.01
50 124 0.98
51 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (50 bp):
TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCGG
Found at i:81784114 original size:100 final size:100
Alignment explanation
Indices: 81783941--81784132 Score: 303
Period size: 100 Copynumber: 1.9 Consensus size: 100
81783931 GGTAAGATGC
* * * * *
81783941 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATTGGTGCCGATGCCATGTCCCA
1 CGATGCCATGTACCAGACATGGTCTTACACTAGCTCTCATATATCGGTGCCGATGCCATATCCCA
* *
81784006 AACATGGTCTTACGCTGGCTCTCATATATCGATCT
66 AACATGGTCTTACACTGGCTCACATATATCGATCT
* *
81784041 CGATGCCATGTACCAGACATGGTCTTACACTAGCTCTCATATATCGGTGCTGATGCCATATCCGA
1 CGATGCCATGTACCAGACATGGTCTTACACTAGCTCTCATATATCGGTGCCGATGCCATATCCCA
81784106 AACATGGTCTTACACTGGCTCACATAT
66 AACATGGTCTTACACTGGCTCACATAT
81784133 TGCCCTAGTA
Statistics
Matches: 83, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
100 83 1.00
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (100 bp):
CGATGCCATGTACCAGACATGGTCTTACACTAGCTCTCATATATCGGTGCCGATGCCATATCCCA
AACATGGTCTTACACTGGCTCACATATATCGATCT
Found at i:81790543 original size:62 final size:63
Alignment explanation
Indices: 81790466--81790620 Score: 231
Period size: 64 Copynumber: 2.5 Consensus size: 63
81790456 AGCTTATGTG
* *
81790466 ATTTATATAACAAAATTTATATTACAAAGTTTGTTCCAATT-TTTAATGTTGTAATGTATTTA
1 ATTTATATAACAAAATTTATATTACAAAATTTGTTCCAATTAATTAATGTTGTAATGTATTTA
* * *
81790528 ATTTATATAAGAAAATTTATATTACAAAATTTGTTCTAATTAGATTGATGTTGTAATGTATTTA
1 ATTTATATAACAAAATTTATATTACAAAATTTGTTCCAATTA-ATTAATGTTGTAATGTATTTA
* *
81790592 ACTTATATAACAAAGTTTATATTACAAAA
1 ATTTATATAACAAAATTTATATTACAAAA
81790621 CTAAGTTTGT
Statistics
Matches: 83, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
62 38 0.46
64 45 0.54
ACGTcount: A:0.41, C:0.06, G:0.08, T:0.45
Consensus pattern (63 bp):
ATTTATATAACAAAATTTATATTACAAAATTTGTTCCAATTAATTAATGTTGTAATGTATTTA
Found at i:81791040 original size:33 final size:32
Alignment explanation
Indices: 81790997--81791123 Score: 103
Period size: 33 Copynumber: 3.9 Consensus size: 32
81790987 AAGAGTGCCA
* *
81790997 TACTACGGTGGATACGACCTAGGAGGAGTGGAG
1 TACTGCGGTGGATACGACC-AGGAGGAGTGAAG
* * * ** **
81791030 TACTGTGGTGGATACGGGCCAAGAAAAGTGTTG
1 TACTGCGGTGGATAC-GACCAGGAGGAGTGAAG
* *
81791063 TATTGCGGTGGATATGACCCAGGAGGAGTGAAG
1 TACTGCGGTGGATACGA-CCAGGAGGAGTGAAG
* *
81791096 TACTACGGTGGATACGAGCA-GAGGAGTG
1 TACTGCGGTGGATACGACCAGGAGGAGTG
81791124 TATGCGATCG
Statistics
Matches: 71, Mismatches: 21, Indels: 6
0.72 0.21 0.06
Matches are distributed among these distances:
31 8 0.11
32 3 0.04
33 57 0.80
34 3 0.04
ACGTcount: A:0.28, C:0.13, G:0.39, T:0.20
Consensus pattern (32 bp):
TACTGCGGTGGATACGACCAGGAGGAGTGAAG
Found at i:81793080 original size:37 final size:38
Alignment explanation
Indices: 81793017--81793100 Score: 93
Period size: 37 Copynumber: 2.2 Consensus size: 38
81793007 ATAAAAAAAC
* *
81793017 AAAAAATGATATTAAAATACTAAAAATAACATGCTA-ATA
1 AAAAAAT-ATAATAAAATACTAAAAATAA-ATGATACATA
81793056 AAAAAATATAATAAAA-AC-ATAAAATAAATGATACATA
1 AAAAAATATAATAAAATACTA-AAAATAAATGATACATA
*
81793093 ATAAAATA
1 AAAAAATA
81793101 CGATTATTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
36 6 0.15
37 19 0.47
38 8 0.20
39 7 0.17
ACGTcount: A:0.67, C:0.06, G:0.04, T:0.24
Consensus pattern (38 bp):
AAAAAATATAATAAAATACTAAAAATAAATGATACATA
Found at i:81793769 original size:5 final size:5
Alignment explanation
Indices: 81793761--81793785 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
81793751 CCCTTTGATT
81793761 TTCCC TTCCC TTCCC TTCCC TTCCC
1 TTCCC TTCCC TTCCC TTCCC TTCCC
81793786 GCCCCCTCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40
Consensus pattern (5 bp):
TTCCC
Found at i:81796366 original size:25 final size:24
Alignment explanation
Indices: 81796338--81796399 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
81796328 GGATCCTTAA
81796338 AGAAACAAAT-TATATAAGTAAATTT
1 AGAAA-AAATATATATAA-TAAATTT
*
81796363 AGAAGAAAATATATATAATAGATTT
1 AGAA-AAAATATATATAATAAATTT
*
81796388 AAAAAGAAATAT
1 AGAAA-AAATAT
81796400 TTACATAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 1 0.03
25 23 0.72
26 8 0.25
ACGTcount: A:0.60, C:0.02, G:0.10, T:0.29
Consensus pattern (24 bp):
AGAAAAAATATATATAATAAATTT
Found at i:81796394 original size:26 final size:25
Alignment explanation
Indices: 81796344--81796396 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 25
81796334 TTAAAGAAAC
*
81796344 AAATTATATAAGTAAATTTAGAAGA
1 AAATTATATAAGTAAATTTAAAAGA
*
81796369 AAATATATATAA-TAGATTTAAAAAGA
1 AAAT-TATATAAGTAAATTT-AAAAGA
81796395 AA
1 AA
81796397 TATTTACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.30
Consensus pattern (25 bp):
AAATTATATAAGTAAATTTAAAAGA
Found at i:81796514 original size:23 final size:23
Alignment explanation
Indices: 81796478--81796524 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
81796468 TATAAAAAGT
* *
81796478 ATTTGAACATAATATCATACAAA
1 ATTTGAAAACAATATCATACAAA
* *
81796501 ATTTGAAAACAATATGATATAAA
1 ATTTGAAAACAATATCATACAAA
81796524 A
1 A
81796525 GGAAATTCTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.55, C:0.09, G:0.06, T:0.30
Consensus pattern (23 bp):
ATTTGAAAACAATATCATACAAA
Found at i:81798425 original size:176 final size:175
Alignment explanation
Indices: 81798142--81798742 Score: 704
Period size: 176 Copynumber: 3.4 Consensus size: 175
81798132 TCTGGGAAAC
* ** **** * *
81798142 AAGGCTGGTGACTTAAATCTGCTCCATTGCCAATACATGGAGATAAGACTT-GTTGTCTTTGACC
1 AAGGCTGGTGGCTTAAATCTGCTCCATTGCCAATACATAAAGATAAGA-TTCACCATCTTCGATC
** * * * * * ** * *
81798206 TAC-CCACGGCTGCTTAAGGGAAACATGATCCTCAATCTTCAGTCCACATTCTTGCTACCTCAGG
65 TACTCCACTACTGCTT-AGGGAGATAAGATCTTCAATATTCAGTCTGCTTTCTTGCTACCTCAGA
81798270 AAGATAAGACCAATATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGAT
129 AAGATAAGACC-AT-TCTTCAACCTGCTCTCTTGCTACCTCAGAGAGAT
* * * * *
81798319 AAGGCTAGTGGC-AAAATCTGCTCCATTGCCGATATATAAAGATAAGATTCACCATCTTTGATCT
1 AAGGCTGGTGGCTTAAATCTGCTCCATTGCCAATACATAAAGATAAGATTCACCATCTTCGATCT
** * *
81798383 ACTCCACTACTGCTTAGGGAGATAAGATCTTCAATATTCAGTCTGCTTTCTTATTGCCTTAGAAA
66 ACTCCACTACTGCTTAGGGAGATAAGATCTTCAATATTCAGTCTGCTTTCTTGCTACCTCAGAAA
* * * *
81798448 GATAAGACTTATTCTTCAACCTGCTCTCTTGCTAACTTAGAAAGAT
131 GATAAGAC-CATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGAT
* * * * * * *
81798494 AAGGCCGGTGGCTTAGATCTTCTCCATTACTAATACATAGAGATAAGATTCCCCATCTTCGATCT
1 AAGGCTGGTGGCTTAAATCTGCTCCATTGCCAATACATAAAGATAAGATTCACCATCTTCGATCT
* * *
81798559 ACTCCGCTACTGCTTAAGGAGATAAGATCTTCAATATTCCGTCTGCTTTCTTGCTACCTCAGAAA
66 ACTCCACTACTGCTTAGGGAGATAAGATCTTCAATATTCAGTCTGCTTTCTTGCTACCTCAGAAA
81798624 GATAAGACTCATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGAT
131 GATAAGAC-CATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGAT
* * *
81798670 AAGGTTGGTGGCTTAAATCTGCTCCATTGCCAATACATGAAGATAAGATTCGCCATCTTCGATCT
1 AAGGCTGGTGGCTTAAATCTGCTCCATTGCCAATACATAAAGATAAGATTCACCATCTTCGATCT
*
81798735 GCTCCACT
66 ACTCCACT
81798743 GCAACCTCAG
Statistics
Matches: 355, Mismatches: 65, Indels: 9
0.83 0.15 0.02
Matches are distributed among these distances:
175 43 0.12
176 292 0.82
177 20 0.06
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (175 bp):
AAGGCTGGTGGCTTAAATCTGCTCCATTGCCAATACATAAAGATAAGATTCACCATCTTCGATCT
ACTCCACTACTGCTTAGGGAGATAAGATCTTCAATATTCAGTCTGCTTTCTTGCTACCTCAGAAA
GATAAGACCATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGAT
Found at i:81798737 original size:45 final size:45
Alignment explanation
Indices: 81798686--81798839 Score: 114
Period size: 45 Copynumber: 3.2 Consensus size: 45
81798676 GGTGGCTTAA
81798686 ATCTGCTCCATTGCCAATACATGAAGATAAGATTCGCCATCTTCG
1 ATCTGCTCCATTGCCAATACATGAAGATAAGATTCGCCATCTTCG
* * * * *
81798731 ATCTGCTCCACTG-CAACCT-CAGGAAAATAAGATCTTCCATCTTCAGTGGCTTAG
1 ATCTGCTCCATTGCCAA--TACATGAAGATAAGA--TT-C-GC--CA-T--CTTCG
* * * *
81798785 ATTTGCTCCATTTCCGATACATGGAGATAAGATTCGCCATCTTCG
1 ATCTGCTCCATTGCCAATACATGAAGATAAGATTCGCCATCTTCG
81798830 ATCTGCTCCA
1 ATCTGCTCCA
81798840 CTGCAATCCC
Statistics
Matches: 81, Mismatches: 15, Indels: 26
0.66 0.12 0.21
Matches are distributed among these distances:
44 3 0.04
45 36 0.44
46 1 0.01
47 3 0.04
48 3 0.04
49 1 0.01
50 1 0.01
51 3 0.04
52 3 0.04
53 1 0.01
54 24 0.30
55 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (45 bp):
ATCTGCTCCATTGCCAATACATGAAGATAAGATTCGCCATCTTCG
Found at i:81798818 original size:99 final size:99
Alignment explanation
Indices: 81798677--81798864 Score: 297
Period size: 99 Copynumber: 1.9 Consensus size: 99
81798667 GATAAGGTTG
81798677 GTGGCTTAAATCTGCTCCATTGCCAATACATGAAGATAAGATTCGCCATCTTCGATCTGCTCCAC
1 GTGGCTTAAATCTGCTCCATTGCCAATACATGAAGATAAGATTCGCCATCTTCGATCTGCTCCAC
81798742 TGCAA-CCTCAGGAAAATAAGATCTTCCATCTTCA
66 TGCAATCC-CAGGAAAATAAGATCTTCCATCTTCA
* * * * *
81798776 GTGGCTTAGATTTGCTCCATTTCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCAC
1 GTGGCTTAAATCTGCTCCATTGCCAATACATGAAGATAAGATTCGCCATCTTCGATCTGCTCCAC
* *
81798841 TGCAATCCCAGGGAGATAAGATCT
66 TGCAATCCCAGGAAAATAAGATCT
81798865 AACTTCACCA
Statistics
Matches: 81, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
99 79 0.98
100 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (99 bp):
GTGGCTTAAATCTGCTCCATTGCCAATACATGAAGATAAGATTCGCCATCTTCGATCTGCTCCAC
TGCAATCCCAGGAAAATAAGATCTTCCATCTTCA
Found at i:81801726 original size:79 final size:80
Alignment explanation
Indices: 81801586--81801738 Score: 177
Period size: 79 Copynumber: 1.9 Consensus size: 80
81801576 AGCCCGGTTA
* * * *
81801586 TAGTAACTCGCACAAATGCCTTTAGGACTTAACCCGGATTTAGTAACTCGAACCAATGCCTTCAG
1 TAGTAACTAGCACAAATGCCTTTAGGACTTAACCCGGATATAGTAACTAGAACCAAAGCCTTCAG
81801651 G-CTTAGCCTGGAAT
66 GACTTAGCCTGGAAT
* ** * *
81801665 TAGTAACTAGCACAAATGCC-TTCGGATCTTAGTCCGGATATAGTCACTTAGCA-CAAAGCCTTC
1 TAGTAACTAGCACAAATGCCTTTAGGA-CTTAACCCGGATATAGTAAC-TAGAACCAAAGCCTTC
*
81801728 GGGACTTAGCC
64 AGGACTTAGCC
81801739 CGGACATCAT
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
78 5 0.08
79 46 0.75
80 10 0.16
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (80 bp):
TAGTAACTAGCACAAATGCCTTTAGGACTTAACCCGGATATAGTAACTAGAACCAAAGCCTTCAG
GACTTAGCCTGGAAT
Found at i:81801742 original size:40 final size:40
Alignment explanation
Indices: 81801558--81801742 Score: 189
Period size: 40 Copynumber: 4.7 Consensus size: 40
81801548 GCTACTCGTT
* * * *
81801558 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCAGGACTTAGCCCGGATATAGTAACTAGCA
* * * * *
81801598 CAAATGCCTTTAGGACTTAACCCGGATTTAGTAACTCGAA
1 CAAATGCCTTCAGGACTTAGCCCGGATATAGTAACTAGCA
* *
81801638 CCAATGCCTTCAGG-CTTAGCCTGGA-ATTAGTAACTAGCA
1 CAAATGCCTTCAGGACTTAGCCCGGATA-TAGTAACTAGCA
* *
81801677 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCAGGA-CTTAGCCCGGATATAGTAAC-TAGCA
*
81801718 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCAGGACTTAGCCCGGA
81801743 CATCATTCGA
Statistics
Matches: 120, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 2 0.02
39 29 0.24
40 76 0.63
41 13 0.11
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCAGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:81815070 original size:27 final size:28
Alignment explanation
Indices: 81815011--81815072 Score: 74
Period size: 27 Copynumber: 2.2 Consensus size: 28
81815001 TAGGATCCTT
*
81815011 AAAGAAACAAATTATATAAGTAAATTTA
1 AAAGAAACAAAATATATAAGTAAATTTA
* *
81815039 GAAGAAA-AAAATATATAA-TAGATTTAA
1 AAAGAAACAAAATATATAAGTAAATTT-A
81815066 AAAGAAA
1 AAAGAAA
81815073 TATTTACATA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 6 0.21
27 17 0.59
28 6 0.21
ACGTcount: A:0.65, C:0.02, G:0.10, T:0.24
Consensus pattern (28 bp):
AAAGAAACAAAATATATAAGTAAATTTA
Found at i:81815190 original size:23 final size:23
Alignment explanation
Indices: 81815154--81815200 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
81815144 TATAAAAAGT
* *
81815154 ATTTGAACATAATATCATACAAA
1 ATTTGAAAACAATATCATACAAA
* *
81815177 ATTTGAAAACAATATGATATAAA
1 ATTTGAAAACAATATCATACAAA
81815200 A
1 A
81815201 GGAAATTCTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.55, C:0.09, G:0.06, T:0.30
Consensus pattern (23 bp):
ATTTGAAAACAATATCATACAAA
Found at i:81823281 original size:22 final size:23
Alignment explanation
Indices: 81823234--81823282 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
81823224 TTATAAAACC
* *
81823234 TAAAGATGAAGTAAAAATAGTAT
1 TAAAGATGAAATAAAAATAATAT
81823257 TAAAGA-GAAATAAAAAGTAAT-T
1 TAAAGATGAAATAAAAA-TAATAT
81823279 TAAA
1 TAAA
81823283 AACATAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 14 0.61
23 9 0.39
ACGTcount: A:0.61, C:0.00, G:0.14, T:0.24
Consensus pattern (23 bp):
TAAAGATGAAATAAAAATAATAT
Found at i:81824793 original size:19 final size:19
Alignment explanation
Indices: 81824769--81824813 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
81824759 TATAGTCCTT
*
81824769 TTAAATATTTTTTTATCTA
1 TTAAATATTTTTATATCTA
*
81824788 TTAAATA-CTTTATATCTA
1 TTAAATATTTTTATATCTA
81824806 -TAAATATT
1 TTAAATATT
81824814 AATTATAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
17 6 0.27
18 9 0.41
19 7 0.32
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.56
Consensus pattern (19 bp):
TTAAATATTTTTATATCTA
Found at i:81825039 original size:21 final size:21
Alignment explanation
Indices: 81825001--81825054 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
81824991 ATATTACATT
* *
81825001 TTATTATATGTAT-TTTTAAA
1 TTATTATATATATGGTTTAAA
*
81825021 TTACTTAT-TATATGGTTTATA
1 TTA-TTATATATATGGTTTAAA
81825042 TTATTATATATAT
1 TTATTATATATAT
81825055 TTTGGTTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 11 0.39
21 17 0.61
ACGTcount: A:0.33, C:0.02, G:0.06, T:0.59
Consensus pattern (21 bp):
TTATTATATATATGGTTTAAA
Found at i:81829853 original size:40 final size:39
Alignment explanation
Indices: 81829766--81829986 Score: 268
Period size: 40 Copynumber: 5.6 Consensus size: 39
81829756 TATTCGGATG
* * *
81829766 ATATCCGGGCTAAGTCCCGAAGGCATGGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCGTTGTGCTATTGACT
81829805 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGC-GTTGTGCTATTGACT
* *
81829845 ATACCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCG-TTGTGCTA-TTGACT
* *
81829885 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGC-GTTGTGCTATTGACT
* *
81829925 ATATCCGGGCTAAGACCCGAAGGCGTTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCG-TTGTGCTA-TTGACT
* *
81829965 ATA-CCCGGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
81829987 TACTTGGGTT
Statistics
Matches: 159, Mismatches: 16, Indels: 14
0.84 0.08 0.07
Matches are distributed among these distances:
39 43 0.27
40 111 0.70
41 5 0.03
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCGTTGTGCTATTGACT
Found at i:81829902 original size:80 final size:80
Alignment explanation
Indices: 81829770--81829986 Score: 314
Period size: 80 Copynumber: 2.7 Consensus size: 80
81829760 CGGATGATAT
* * *
81829770 CCGGGCTAAGTCCCGAAGGC-ATGGTGCTAG-TGACTATATCCGGGCTAAGTCCCGAAGGCAGTT
1 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTG-CTATATCCGGGCTAAGTCCCGAAGGCAGTT
*
81829833 GTGCTATTGACTATAC
65 GTGCTAGTGACTATAC
**
81829849 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCTTTTG
1 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCAGTTG
*
81829914 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
81829929 CCGGGCTAAGACCCGAAGGCGTTTGTGCGAGTTGCTATA-CCCGGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
81829987 TACTTGGGTT
Statistics
Matches: 126, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
79 37 0.29
80 87 0.69
81 2 0.02
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCAGTTG
TGCTAGTGACTATAC
Found at i:81839294 original size:16 final size:16
Alignment explanation
Indices: 81839256--81839306 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
81839246 TAAAATATTT
* *
81839256 TTAATACTATAATTAAA
1 TTAATAATAT-ATAAAA
81839273 TATAATAATATATAAAA
1 T-TAATAATATATAAAA
81839290 TTAATAAT-TATTAAAA
1 TTAATAATATA-TAAAA
81839306 T
1 T
81839307 CTATAAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
15 2 0.07
16 13 0.43
17 7 0.23
18 8 0.27
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (16 bp):
TTAATAATATATAAAA
Found at i:81840961 original size:36 final size:37
Alignment explanation
Indices: 81840914--81840986 Score: 121
Period size: 36 Copynumber: 2.0 Consensus size: 37
81840904 TTGGGAATTA
81840914 TCAAAATATATTTTCCG-TTCTTTTTCAAATTTTCGG
1 TCAAAATATATTTTCCGTTTCTTTTTCAAATTTTCGG
*
81840950 TCAAAATATATTTTCCGTTTTCTTTTTGAAATTTTCG
1 TCAAAATATATTTTCCG-TTTCTTTTTCAAATTTTCG
81840987 ATTTTCTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 17 0.50
38 17 0.50
ACGTcount: A:0.25, C:0.15, G:0.08, T:0.52
Consensus pattern (37 bp):
TCAAAATATATTTTCCGTTTCTTTTTCAAATTTTCGG
Found at i:81845839 original size:44 final size:43
Alignment explanation
Indices: 81845772--81845936 Score: 165
Period size: 43 Copynumber: 3.8 Consensus size: 43
81845762 GCATAGGATT
* *
81845772 TCGATATGTAATTTCGTGTAAGACCACGTCTGGGACAATCACA
1 TCGATATTTAATTTCGTGTAAGACCACGTCTGGGACAATCATA
* *
81845815 TCGAT-TTTAAATTTACGTGTAAGACCATGTTTGGGAC-ATCAGTA
1 TCGATATTT-AATTT-CGTGTAAGACCACGTCTGGGACAATCA-TA
* ** * * *
81845859 TCG-TATTTAGTTTCGTGTAAGACCTTGTCTGGGATAGTCGTA
1 TCGATATTTAATTTCGTGTAAGACCACGTCTGGGACAATCATA
* * *
81845901 TCGATATTTGATTACATGTAAGACCACGTCTGGGAC
1 TCGATATTTAATTTCGTGTAAGACCACGTCTGGGAC
81845937 GTTGGCATTC
Statistics
Matches: 99, Mismatches: 17, Indels: 12
0.77 0.13 0.09
Matches are distributed among these distances:
42 26 0.26
43 46 0.46
44 27 0.27
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (43 bp):
TCGATATTTAATTTCGTGTAAGACCACGTCTGGGACAATCATA
Found at i:81846574 original size:33 final size:33
Alignment explanation
Indices: 81846519--81846584 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
81846509 CATGCAGTAA
* * *
81846519 CAGTCTGGGTCTTACCCCTATACAGTATCAGTG
1 CAGTCTAGGCCTTACCCCTATACAGTAACAGTG
* *
81846552 CAGTCTAGGCCTTAGCCTTATACAGTAACAGTG
1 CAGTCTAGGCCTTACCCCTATACAGTAACAGTG
81846585 TGGGCCTAAG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (33 bp):
CAGTCTAGGCCTTACCCCTATACAGTAACAGTG
Found at i:81864219 original size:42 final size:43
Alignment explanation
Indices: 81864162--81864263 Score: 107
Period size: 42 Copynumber: 2.4 Consensus size: 43
81864152 TGAGATTCAC
81864162 GTGTAAGACCATGTCTGAGACACCGGCATCG-TATTTGATTTT
1 GTGTAAGACCATGTCTGAGACACCGGCATCGATATTTGATTTT
* * * * ** **
81864204 GTGTATGACCTTGTCTGGGATAGTGGCATCGATATTTGATTGC
1 GTGTAAGACCATGTCTGAGACACCGGCATCGATATTTGATTTT
* *
81864247 ATGTAAGACCACGTCTG
1 GTGTAAGACCATGTCTG
81864264 GGATGTTGGC
Statistics
Matches: 47, Mismatches: 12, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
42 25 0.53
43 22 0.47
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGAGACACCGGCATCGATATTTGATTTT
Found at i:81864267 original size:43 final size:42
Alignment explanation
Indices: 81864119--81864266 Score: 111
Period size: 44 Copynumber: 3.5 Consensus size: 42
81864109 TGTAATTTCG
* * * *
81864119 TGTAAGACCACGTCTGGGACATTGGTACCGAT-TTGAGATTCA
1 TGTAAGACCACGTCTGGGACAGTGGCATCGATATT-TGATTCA
* * ** **
81864161 CGTGTAAGACCATGTCTGAGACACCGGCATCG-TATTTGATTTTG
1 --TGTAAGACCACGTCTGGGACAGTGGCATCGATATTTGA-TTCA
* ** *
81864205 TGTATGACCTTGTCTGGGATAGTGGCATCGATATTTGATTGCA
1 TGTAAGACCACGTCTGGGACAGTGGCATCGATATTTGATT-CA
81864248 TGTAAGACCACGTCTGGGA
1 TGTAAGACCACGTCTGGGA
81864267 TGTTGGCATT
Statistics
Matches: 80, Mismatches: 20, Indels: 9
0.73 0.18 0.08
Matches are distributed among these distances:
42 26 0.32
43 26 0.32
44 28 0.35
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACAGTGGCATCGATATTTGATTCA
Found at i:81867345 original size:31 final size:31
Alignment explanation
Indices: 81867310--81867371 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 31
81867300 TACCATACTT
81867310 ATTTTGAGAATAAAGTAAATTTGT-ATTTATA
1 ATTTT-AGAATAAAGTAAATTTGTAATTTATA
** *
81867341 ATTTTTTAATAAGGTAAATTTGTAATTTATA
1 ATTTTAGAATAAAGTAAATTTGTAATTTATA
81867372 CTATCTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 15 0.56
31 12 0.44
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.48
Consensus pattern (31 bp):
ATTTTAGAATAAAGTAAATTTGTAATTTATA
Found at i:81867462 original size:6 final size:6
Alignment explanation
Indices: 81867451--81867480 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
81867441 ATTGAAATAA
81867451 TATTTT TATTTT TATTTT TATTTT TATTTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT
81867481 CATTAGAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TATTTT
Found at i:81869883 original size:24 final size:25
Alignment explanation
Indices: 81869839--81869907 Score: 74
Period size: 24 Copynumber: 2.8 Consensus size: 25
81869829 TTTTAAAATA
*
81869839 ATTATTTAATTTA--AGTATTTGG-T
1 ATTATTTAATTTATTA-TTTTTGGTT
*
81869862 ATTTATTTTATTT-TTATTTTTGGTT
1 A-TTATTTAATTTATTATTTTTGGTT
81869887 ATTATTTAATTTATTATTTTT
1 ATTATTTAATTTATTATTTTT
81869908 CTTTTCTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
23 1 0.03
24 26 0.68
25 11 0.29
ACGTcount: A:0.25, C:0.00, G:0.07, T:0.68
Consensus pattern (25 bp):
ATTATTTAATTTATTATTTTTGGTT
Found at i:81870526 original size:26 final size:26
Alignment explanation
Indices: 81870490--81870599 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
81870480 TGATACAAAT
81870490 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
81870516 TGATAAAAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
81870542 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
81870568 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
81870594 TGATAA
1 TGATAA
81870600 GAATTTCATG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:81872631 original size:137 final size:137
Alignment explanation
Indices: 81872385--81872672 Score: 513
Period size: 137 Copynumber: 2.1 Consensus size: 137
81872375 GAGTAGTCTC
*
81872385 CCCAAATGGGCTTGCATATGTTTACTGATATTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTAATATTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
81872450 TGTTATCTGAATAAAGTGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAAGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
81872515 ACTGTTA
131 ACTGTTA
* *
81872522 CCCAAATGGGCTTGTATATGTTTACTAATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTAATATTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
81872587 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAAGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
81872652 ACTGTTA
131 ACTGTTA
**
81872659 CCTGAATGGGCTTG
1 CCCAAATGGGCTTG
81872673 AGCTGACTTG
Statistics
Matches: 144, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
137 144 1.00
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTAATATTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAAGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:81873913 original size:22 final size:22
Alignment explanation
Indices: 81873868--81873914 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
81873858 CTTCAGGCAT
*
81873868 ACGACTGTGTGCCTCTCTTCAC
1 ACGACTGTGTGCCCCTCTTCAC
* * *
81873890 ACGAGTGTGTGCCCCTTTTTAC
1 ACGACTGTGTGCCCCTCTTCAC
81873912 ACG
1 ACG
81873915 GGCATGTGAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.15, C:0.32, G:0.21, T:0.32
Consensus pattern (22 bp):
ACGACTGTGTGCCCCTCTTCAC
Found at i:81880321 original size:13 final size:15
Alignment explanation
Indices: 81880292--81880324 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
81880282 TGTGGGAAAA
81880292 ATAAATATTTGATAT
1 ATAAATATTTGATAT
81880307 ATAAATA-TT-ATAT
1 ATAAATATTTGATAT
81880320 ATAAA
1 ATAAA
81880325 GAAAAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.50
14 2 0.11
15 7 0.39
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (15 bp):
ATAAATATTTGATAT
Found at i:81880439 original size:27 final size:27
Alignment explanation
Indices: 81880409--81880461 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
81880399 CATAATGATA
*
81880409 TATATAATATATT-TTTTATTATATAAT
1 TATATAAT-TATTATTTGATTATATAAT
*
81880436 TATATAATTATTATTTGATTTTATAA
1 TATATAATTATTATTTGATTATATAA
81880462 ATAAAAGAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (27 bp):
TATATAATTATTATTTGATTATATAAT
Found at i:81892910 original size:26 final size:24
Alignment explanation
Indices: 81892880--81892929 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
81892870 AAATAAAAAA
*
81892880 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
81892906 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
81892930 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:81892949 original size:21 final size:21
Alignment explanation
Indices: 81892900--81892958 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
81892890 ATAATAAATC
*
81892900 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
81892920 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
81892942 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
81892959 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:81901850 original size:5 final size:5
Alignment explanation
Indices: 81901842--81901870 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
81901832 TGTTTTTGGG
81901842 TTTCT TTTCT TTTCT TTTCT TTTCT TTTC
1 TTTCT TTTCT TTTCT TTTCT TTTCT TTTC
81901871 AATCTATTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTCT
Found at i:81915695 original size:24 final size:24
Alignment explanation
Indices: 81915634--81915732 Score: 103
Period size: 24 Copynumber: 4.0 Consensus size: 24
81915624 GCGAACTCAC
*
81915634 CTCAGCTCGTATGAGCTTACTGATAT
1 CTCAGCTCGTAAGAGCTTACTG-T-T
* * *
81915660 ATCAGCTTGTAAGAGCTTATTGTT
1 CTCAGCTCGTAAGAGCTTACTGTT
*
81915684 CTCAGCTCGTAAAAGCTTACTGTT
1 CTCAGCTCGTAAGAGCTTACTGTT
81915708 -TCTAGCTCGATAA-AGCTTACTGTT
1 CTC-AGCTCG-TAAGAGCTTACTGTT
81915732 C
1 C
81915733 ATTAGCTCAA
Statistics
Matches: 62, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
23 2 0.03
24 38 0.61
25 4 0.06
26 18 0.29
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.36
Consensus pattern (24 bp):
CTCAGCTCGTAAGAGCTTACTGTT
Found at i:81915738 original size:25 final size:24
Alignment explanation
Indices: 81915673--81915767 Score: 86
Period size: 24 Copynumber: 3.9 Consensus size: 24
81915663 AGCTTGTAAG
* *
81915673 AGCTTATTGTTCTCAGCTCG-TAAA
1 AGCTTACTGTTCTTAGCTCGAT-AA
81915697 AGCTTACTGTT-TCTAGCTCGATAA
1 AGCTTACTGTTCT-TAGCTCGATAA
* *
81915721 AGCTTACTGTTCATTAGCTCAAAATA
1 AGCTTACTGTTC-TTAGCTCGATA-A
* *
81915747 AGCTTACTGATCATAGCTCGA
1 AGCTTACTGTTCTTAGCTCGA
81915768 AAGAGCGAAT
Statistics
Matches: 59, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
23 1 0.02
24 29 0.49
25 16 0.27
26 13 0.22
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (24 bp):
AGCTTACTGTTCTTAGCTCGATAA
Found at i:81915755 original size:26 final size:25
Alignment explanation
Indices: 81915694--81915765 Score: 78
Period size: 25 Copynumber: 2.9 Consensus size: 25
81915684 CTCAGCTCGT
*
81915694 AAAAGCTTACTGTT--TCTAGCTCGA
1 AAAAGCTTACTGTTCAT-TAGCTCAA
*
81915718 TAAAGCTTACTGTTCATTAGCTCAA
1 AAAAGCTTACTGTTCATTAGCTCAA
*
81915743 AATAAGCTTACTGATCA-TAGCTC
1 AA-AAGCTTACTGTTCATTAGCTC
81915766 GAAAGAGCGA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
24 13 0.32
25 14 0.34
26 14 0.34
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (25 bp):
AAAAGCTTACTGTTCATTAGCTCAA
Found at i:81917503 original size:39 final size:39
Alignment explanation
Indices: 81917449--81917585 Score: 139
Period size: 39 Copynumber: 3.5 Consensus size: 39
81917439 AGTGAAAATA
*
81917449 CAATTTTATAACCAAATACTCAAATTCTTATTGGAAACC
1 CAATTTTGTAACCAAATACTCAAATTCTTATTGGAAACC
* * * * **
81917488 CAATTTTGTATCCAAATACTCAAATTTTTAATGAAAAAATA
1 CAATTTTGTAACCAAATACTCAAATTCTTATTG--GAAACC
* * * *
81917529 CAATTTTGTAACTAAATACTCAAAGTCCTATTGGAAGCC
1 CAATTTTGTAACCAAATACTCAAATTCTTATTGGAAACC
**
81917568 CAACCTTGTAACCAAATA
1 CAATTTTGTAACCAAATA
81917586 ATTTGTAAAA
Statistics
Matches: 76, Mismatches: 20, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
39 46 0.61
41 30 0.39
ACGTcount: A:0.42, C:0.19, G:0.07, T:0.32
Consensus pattern (39 bp):
CAATTTTGTAACCAAATACTCAAATTCTTATTGGAAACC
Found at i:81918480 original size:6 final size:6
Alignment explanation
Indices: 81918471--81918531 Score: 52
Period size: 6 Copynumber: 10.2 Consensus size: 6
81918461 ATCATTATCA
* * * * *
81918471 TCATCT TCATCT CCATCT CCATCT CCATCT CCAACGT T-ATCT TCATCT
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATC-T TCATCT TCATCT
*
81918519 TCATCT TTATCT T
1 TCATCT TCATCT T
81918532 GTTCTTCTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
5 2 0.04
6 45 0.94
7 1 0.02
ACGTcount: A:0.18, C:0.36, G:0.02, T:0.44
Consensus pattern (6 bp):
TCATCT
Found at i:81918528 original size:18 final size:18
Alignment explanation
Indices: 81918473--81918531 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 18
81918463 CATTATCATC
**
81918473 ATCTTCATCTCCATCTCC
1 ATCTTCATCTCCATCTTT
* * *
81918491 ATCTCCATCTCCAACGTT
1 ATCTTCATCTCCATCTTT
*
81918509 ATCTTCATCTTCATCTTT
1 ATCTTCATCTCCATCTTT
81918527 ATCTT
1 ATCTT
81918532 GTTCTTCTAT
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.19, C:0.36, G:0.02, T:0.44
Consensus pattern (18 bp):
ATCTTCATCTCCATCTTT
Found at i:81920551 original size:22 final size:22
Alignment explanation
Indices: 81920507--81920551 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
81920497 TTAATCATTA
* **
81920507 TTATTCAGTATCAGTCATTTAT
1 TTATTCAGTAACAGTCAAATAT
81920529 TTATTCAGTAACAGTCAAATAT
1 TTATTCAGTAACAGTCAAATAT
81920551 T
1 T
81920552 CGGTAGCAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.44
Consensus pattern (22 bp):
TTATTCAGTAACAGTCAAATAT
Done.