Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 252 of 290
Found at i:81921802 original size:14 final size:13
Alignment explanation
Indices: 81921772--81921800 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
81921762 TTCTTTCTCC
81921772 TTTCCTTCCCCCA
1 TTTCCTTCCCCCA
81921785 TTTCCTTCCCCCA
1 TTTCCTTCCCCCA
81921798 TTT
1 TTT
81921801 TCGTTTAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.48, G:0.00, T:0.45
Consensus pattern (13 bp):
TTTCCTTCCCCCA
Found at i:81922975 original size:29 final size:29
Alignment explanation
Indices: 81922933--81922991 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
81922923 AGCTCGTGTC
81922933 TACCATGGACGAAAAAAAGAAAGTTTTGT
1 TACCATGGACGAAAAAAAGAAAGTTTTGT
* *
81922962 TACCATGGATGAAAGAAAGAAAGTTTTGT
1 TACCATGGACGAAAAAAAGAAAGTTTTGT
81922991 T
1 T
81922992 TTCTTTGTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.27
Consensus pattern (29 bp):
TACCATGGACGAAAAAAAGAAAGTTTTGT
Found at i:81924509 original size:16 final size:16
Alignment explanation
Indices: 81924488--81924541 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
81924478 TTTGGTTTAC
81924488 TGTAATGGAATAAGGT
1 TGTAATGGAATAAGGT
*
81924504 TGTAATGGAATAAAGT
1 TGTAATGGAATAAGGT
81924520 TGTAATGGAAT-AGAGT
1 TGTAATGGAATAAG-GT
81924536 TGTAAT
1 TGTAAT
81924542 TAGTAATTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
15 1 0.03
16 34 0.97
ACGTcount: A:0.39, C:0.00, G:0.28, T:0.33
Consensus pattern (16 bp):
TGTAATGGAATAAGGT
Found at i:81924895 original size:21 final size:21
Alignment explanation
Indices: 81924852--81924900 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
81924842 TATTATCAAA
81924852 ATATAAATTAAAAAATCATAAT
1 ATATAAATTAAAAAA-CATAAT
*
81924874 ATATAATATTATAAAA-ATAAT
1 ATATAA-ATTAAAAAACATAAT
81924895 ATATAA
1 ATATAA
81924901 CCTACTTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 11 0.44
22 6 0.24
23 8 0.32
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
ATATAAATTAAAAAACATAAT
Found at i:81926811 original size:70 final size:70
Alignment explanation
Indices: 81926698--81926842 Score: 254
Period size: 70 Copynumber: 2.1 Consensus size: 70
81926688 AACAACAAGC
* *
81926698 AATAATGATTCTATTGTGCACCCTCACAGGATAGAATGATGGACTCCTAAGTATTCCCTGTCTAA
1 AATAATGATTCTATTGTGCACCCTCACAGGATAGAATAATGGACTCCTAAGTATTCCCTATCTAA
81926763 GTTTT
66 GTTTT
*
81926768 AATAATGATTCTATTGTGCACCCTCACAGGATAGAATAATGGACTCCTAAGTATTTCCTATCTAA
1 AATAATGATTCTATTGTGCACCCTCACAGGATAGAATAATGGACTCCTAAGTATTCCCTATCTAA
*
81926833 TTTTT
66 GTTTT
81926838 AATAA
1 AATAA
81926843 CCCAAAGCAT
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
70 71 1.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (70 bp):
AATAATGATTCTATTGTGCACCCTCACAGGATAGAATAATGGACTCCTAAGTATTCCCTATCTAA
GTTTT
Found at i:81929017 original size:16 final size:16
Alignment explanation
Indices: 81928996--81929027 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
81928986 CAATATTTTT
81928996 ATTAAACCAAGAAAAA
1 ATTAAACCAAGAAAAA
81929012 ATTAAACCAAGAAAAA
1 ATTAAACCAAGAAAAA
81929028 GTACCGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.69, C:0.12, G:0.06, T:0.12
Consensus pattern (16 bp):
ATTAAACCAAGAAAAA
Found at i:81934807 original size:12 final size:12
Alignment explanation
Indices: 81934792--81934830 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
81934782 TCAATTACAA
81934792 AATCAGATGCAT
1 AATCAGATGCAT
* *
81934804 AATCAGATACAA
1 AATCAGATGCAT
81934816 AATCAGATGCAT
1 AATCAGATGCAT
81934828 AAT
1 AAT
81934831 TAGTTACAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.49, C:0.15, G:0.13, T:0.23
Consensus pattern (12 bp):
AATCAGATGCAT
Found at i:81934808 original size:24 final size:24
Alignment explanation
Indices: 81934781--81934842 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
81934771 GCAATTGCAG
81934781 ATCAATTACAAAATCAGATGCATA
1 ATCAATTACAAAATCAGATGCATA
81934805 ATCAGA-TACAAAATCAGATGCATA
1 ATCA-ATTACAAAATCAGATGCATA
* *
81934829 ATTAGTTACAAAAT
1 ATCAATTACAAAAT
81934843 TATATCCTAC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
24 33 0.97
25 1 0.03
ACGTcount: A:0.50, C:0.15, G:0.10, T:0.26
Consensus pattern (24 bp):
ATCAATTACAAAATCAGATGCATA
Found at i:81936795 original size:28 final size:29
Alignment explanation
Indices: 81936736--81936800 Score: 80
Period size: 28 Copynumber: 2.3 Consensus size: 29
81936726 TTTTCATTTA
* *
81936736 TTTCACAATTTAACCCGTCAATTTACATT
1 TTTCTCAATTTAACCCGTCAATTGACATT
81936765 TTTCTCAATTTAATCCC-T-AATTGACATT
1 TTTCTCAATTTAA-CCCGTCAATTGACATT
*
81936793 TTTGTCAA
1 TTTCTCAA
81936801 AAATCATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 16 0.50
29 13 0.41
30 3 0.09
ACGTcount: A:0.29, C:0.22, G:0.05, T:0.45
Consensus pattern (29 bp):
TTTCTCAATTTAACCCGTCAATTGACATT
Found at i:81941209 original size:196 final size:196
Alignment explanation
Indices: 81940866--81941224 Score: 533
Period size: 196 Copynumber: 1.8 Consensus size: 196
81940856 AAATCAAACC
* *
81940866 CAAATACTACGTCTCATGCTATAGTTCTAAATAAAATAATACAGTCTTTGAATAAACAAAATAAT
1 CAAATACTACGTCCCATGCCATAGTTCTAAATAAAATAATACAGTCTTTGAATAAACAAAATAAT
* * * *
81940931 ATTAAAATACTTTAATAAAATAAATCTTTCTAAGCTGAGACTCTCTGGATGCAATGTTTGTGTCC
66 ATTAAAATACTTTAATAAAATAAATCTTTCTAAGCTGAGACTCCCCGGATGCAATGTCTGCGTCC
*
81940996 TAACCTGATGTGTTATCTATAAGGATGAAAATTTAAAGGGGACTGAGCTATCATGCAAAGTGAAC
131 TAACCTGATGGGTTATCTATAAGGATGAAAATTTAAAGGGGACTGAGCTATCATGCAAAGTGAAC
81941061 T
196 T
* ** *
81941062 CAAATCCTACGTCCCATGCCATCTTTCTAAATAAAATAATACAGTCTTTGAATAAA-AATAATAG
1 CAAATACTACGTCCCATGCCATAGTTCTAAATAAAATAATACAGTCTTTGAATAAACAA-AATAA
* * * *
81941126 TATTAAAATACTTTAATAAAATAAGTAC-TTCTGAGCTGCGACTCCCCGGATGCGATGTCTGCGT
65 TATTAAAATACTTTAATAAAATAAAT-CTTTCTAAGCTGAGACTCCCCGGATGCAATGTCTGCGT
* *
81941190 CCTAACCTGGTGGGTTATCTGTAAGGATGAAAATT
129 CCTAACCTGATGGGTTATCTATAAGGATGAAAATT
81941225 CAAACAAGGG
Statistics
Matches: 144, Mismatches: 17, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
195 2 0.01
196 141 0.98
197 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.31
Consensus pattern (196 bp):
CAAATACTACGTCCCATGCCATAGTTCTAAATAAAATAATACAGTCTTTGAATAAACAAAATAAT
ATTAAAATACTTTAATAAAATAAATCTTTCTAAGCTGAGACTCCCCGGATGCAATGTCTGCGTCC
TAACCTGATGGGTTATCTATAAGGATGAAAATTTAAAGGGGACTGAGCTATCATGCAAAGTGAAC
T
Found at i:81943915 original size:20 final size:21
Alignment explanation
Indices: 81943877--81943927 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 21
81943867 ATTTCAAAGA
*
81943877 AATTATAATCTAAAAAAATC-T
1 AATTA-AATATAAAAAAATCAT
81943898 -ATTAAATATAAAACAAATCAT
1 AATTAAATATAAAA-AAATCAT
81943919 AATTAAATA
1 AATTAAATA
81943928 AATTAACAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 8 0.31
20 9 0.35
21 1 0.04
22 8 0.31
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.31
Consensus pattern (21 bp):
AATTAAATATAAAAAAATCAT
Found at i:81954122 original size:20 final size:20
Alignment explanation
Indices: 81954086--81954123 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
81954076 AATCTAATCA
*
81954086 AAACATAAAATTTTGAGTCG
1 AAACATAAAATTCTGAGTCG
81954106 AAACTATAAAA-TCTGAGT
1 AAAC-ATAAAATTCTGAGT
81954124 TACAAGGGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.47, C:0.11, G:0.13, T:0.29
Consensus pattern (20 bp):
AAACATAAAATTCTGAGTCG
Found at i:81955129 original size:14 final size:14
Alignment explanation
Indices: 81955112--81955146 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
81955102 CTAGAAAGAG
* *
81955112 AAAATTAGAAATTT
1 AAAATTAAAAAATT
81955126 AAAATTAAAAAATT
1 AAAATTAAAAAATT
81955140 AAAATTA
1 AAAATTA
81955147 TATAAAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (14 bp):
AAAATTAAAAAATT
Found at i:81955195 original size:15 final size:15
Alignment explanation
Indices: 81955171--81955206 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
81955161 TTTTTAATTT
81955171 TAAAATATAAAATTATA
1 TAAAATA-AAAA-TATA
81955188 TAAAATAAAAATATA
1 TAAAATAAAAATATA
81955203 TAAA
1 TAAA
81955207 TTTTACTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 8 0.42
16 4 0.21
17 7 0.37
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
TAAAATAAAAATATA
Found at i:81960324 original size:178 final size:178
Alignment explanation
Indices: 81960025--81960381 Score: 714
Period size: 178 Copynumber: 2.0 Consensus size: 178
81960015 TAGTTGCATG
81960025 TGATGGACGGTAATGACCTTAGAAATATGTGTTATGTTTATTTATTTTTAAAGGGTAAAGTTGTA
1 TGATGGACGGTAATGACCTTAGAAATATGTGTTATGTTTATTTATTTTTAAAGGGTAAAGTTGTA
81960090 AAATGGTTAAAAACATATGTAATAATAAAACATAAAGAAATTATAATATGGCTTCATAATTTTGT
66 AAATGGTTAAAAACATATGTAATAATAAAACATAAAGAAATTATAATATGGCTTCATAATTTTGT
81960155 TCATCCACTGAAACTAAAACAAAAGAAAAGAGAAAAGAAGGTTAGGGT
131 TCATCCACTGAAACTAAAACAAAAGAAAAGAGAAAAGAAGGTTAGGGT
81960203 TGATGGACGGTAATGACCTTAGAAATATGTGTTATGTTTATTTATTTTTAAAGGGTAAAGTTGTA
1 TGATGGACGGTAATGACCTTAGAAATATGTGTTATGTTTATTTATTTTTAAAGGGTAAAGTTGTA
81960268 AAATGGTTAAAAACATATGTAATAATAAAACATAAAGAAATTATAATATGGCTTCATAATTTTGT
66 AAATGGTTAAAAACATATGTAATAATAAAACATAAAGAAATTATAATATGGCTTCATAATTTTGT
81960333 TCATCCACTGAAACTAAAACAAAAGAAAAGAGAAAAGAAGGTTAGGGT
131 TCATCCACTGAAACTAAAACAAAAGAAAAGAGAAAAGAAGGTTAGGGT
81960381 T
1 T
81960382 TGGCACTTAC
Statistics
Matches: 179, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
178 179 1.00
ACGTcount: A:0.43, C:0.07, G:0.18, T:0.32
Consensus pattern (178 bp):
TGATGGACGGTAATGACCTTAGAAATATGTGTTATGTTTATTTATTTTTAAAGGGTAAAGTTGTA
AAATGGTTAAAAACATATGTAATAATAAAACATAAAGAAATTATAATATGGCTTCATAATTTTGT
TCATCCACTGAAACTAAAACAAAAGAAAAGAGAAAAGAAGGTTAGGGT
Found at i:81969615 original size:19 final size:20
Alignment explanation
Indices: 81969588--81969631 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
81969578 AAAATTCAAT
81969588 TAATAATACT-ATA-TGATAA
1 TAATAATACTAATAGTGA-AA
*
81969607 TAATGATACTAATAGTGAAA
1 TAATAATACTAATAGTGAAA
81969627 TAATA
1 TAATA
81969632 TAAAAAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
19 9 0.43
20 9 0.43
21 3 0.14
ACGTcount: A:0.52, C:0.05, G:0.09, T:0.34
Consensus pattern (20 bp):
TAATAATACTAATAGTGAAA
Found at i:81971553 original size:94 final size:93
Alignment explanation
Indices: 81971387--81972237 Score: 1004
Period size: 94 Copynumber: 9.1 Consensus size: 93
81971377 GTGTTACAGT
* * * * * *
81971387 TTCATCTTGCTCCATTGCAACTTCAAGGAGATAAAATTTGTTGTTATGGT--TTTAATCTGACCC
1 TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGA--T-TCGCTATGGTAATTCAATCTGACCC
* * * *
81971450 ACTGTAACTTCAAGGATATAGGATTTGTAGC
63 ACTGCAACTTTAGGGGTATAGGATTTGTAGC
* *
81971481 TTCATCTTGCTCCACTGCAAATTCAGGGAGATAAGATTCGCTATGGTAATTTCAATCTAACCCAC
1 TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAA-TTCAATCTGACCCAC
81971546 TGCAACTTTAGGGGTATAGGATTTGTAGC
65 TGCAACTTTAGGGGTATAGGATTTGTAGC
* * * * *
81971575 TTCATCTTGCTCCACTGTAACTTCAGAGAGATAAGATTCGTTATGGTAACTTCAATCCGACTCAC
1 TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAA-TTCAATCTGACCCAC
81971640 TGCAACTTTAGGGGTATAGGATTTGTAGC
65 TGCAACTTTAGGGGTATAGGATTTGTAGC
* * * * * *
81971669 TTCATCTTGCTCCACTGTAACTTTAGAGAGATAACATTCACTATGGTAACTTCAATCTGACTCAC
1 TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAA-TTCAATCTGACCCAC
*
81971734 TGCAACTTTAGAGGTATAGGATTTGTAGC
65 TGCAACTTTAGGGGTATAGGATTTGTAGC
* * * * * ** **
81971763 TTTATCTTGTTTCACTGCAAGTTCAAGGAGATAAGATTCATTATGGTAGATTCAATCCAACCCAC
1 TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTA-ATTCAATCTGACCCAC
81971828 TGCAACTTTAGGGGTATAGGATTTGTAGC
65 TGCAACTTTAGGGGTATAGGATTTGTAGC
** * *
81971857 TTCATCTTTATCCACTGCAACTTCAGGGAGATAAGACTCGCTATGGTAGATTCAATCTAACCCAC
1 TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTA-ATTCAATCTGACCCAC
* *
81971922 CGCAACTTCAGGGGTATAGGATTTGTAGC
65 TGCAACTTTAGGGGTATAGGATTTGTAGC
* * * *
81971951 TTCATCTTGCTCCACTGCAACTTTAGAGAGATAACATTCGCTATGGTAACTTCAATCTGACTCAC
1 TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAA-TTCAATCTGACCCAC
*
81972016 TGCAACTTTAGAGGTATAGGATTTGTAGC
65 TGCAACTTTAGGGGTATAGGATTTGTAGC
* * * * ** ** *
81972045 TTTATCTTGCTTCACTGCAAGTTCAAGGAGATAAGATTCATTATGGTAGATTCAATCCAACCGAC
1 TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTA-ATTCAATCTGACCCAC
*
81972110 TGCAACTTTAGAGGTATAGGATTTGTAGC
65 TGCAACTTTAGGGGTATAGGATTTGTAGC
** * * * *
81972139 TTCATCTTTATCCACTACAACTTCAGGGAGATAAGACTCGCTATGGTAGAGTCAATTTGACCCAC
1 TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTA-ATTCAATCTGACCCAC
*** * *
81972204 CATAACTTCAGGGGAATAGGATTTGTAGC
65 TGCAACTTTAGGGGTATAGGATTTGTAGC
81972233 TTCAT
1 TTCAT
81972238 TGTAATACCC
Statistics
Matches: 654, Mismatches: 97, Indels: 12
0.86 0.13 0.02
Matches are distributed among these distances:
91 8 0.01
92 1 0.00
93 1 0.00
94 642 0.98
95 2 0.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (93 bp):
TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAATTCAATCTGACCCACT
GCAACTTTAGGGGTATAGGATTTGTAGC
Found at i:81971743 original size:50 final size:48
Alignment explanation
Indices: 81971493--81972028 Score: 174
Period size: 50 Copynumber: 11.3 Consensus size: 48
81971483 CATCTTGCTC
* * * * * *
81971493 CACTGCAAATTCAGGGAGATAAGATTCGCTATGGTAATTTCAATCTAACC
1 CACTGCAACTTTAGAGAGATAAGATT--CTATGGTAACTTCAATCTGACT
* * *
81971543 CACTGCAACTTTAG-GGGTATAGGA-T-T-T-GTAGCTTC-ATCTTG-CT
1 CACTGCAACTTTAGAGAG-ATAAGATTCTATGGTAACTTCAATC-TGACT
* * *
81971586 CCACTGTAACTTCAGAGAGATAAGATTCGTTATGGTAACTTCAATCCGACT
1 -CACTGCAACTTTAGAGAGATAAGATTC--TATGGTAACTTCAATCTGACT
* * *
81971637 CACTGCAACTTTAG-GGGTATAGGA-T-T-T-GTAGCTTC-ATCTTG-CT
1 CACTGCAACTTTAGAGAG-ATAAGATTCTATGGTAACTTCAATC-TGACT
* *
81971680 CCACTGTAACTTTAGAGAGATAACATTCACTATGGTAACTTCAATCTGACT
1 -CACTGCAACTTTAGAGAGATAAGATT--CTATGGTAACTTCAATCTGACT
* * * **
81971731 CACTGCAACTTTAGAG-GTATAGGA-T-T-T-GTAGCTT-TATCTTGTTT
1 CACTGCAACTTTAGAGAG-ATAAGATTCTATGGTAACTTCAATC-TGACT
* * ** *
81971775 CACTGCAAGTTCA-AGGAGATAAGATTCATTATGGTAGA-TTCAATCCAACC
1 CACTGCAACTTTAGA-GAGATAAGATTC--TATGGTA-ACTTCAATCTGACT
* * * *
81971825 CACTGCAACTTTAG-GGGTATAGGA-T-T-T-GTAGCTTC-ATCTTTA-T
1 CACTGCAACTTTAGAGAG-ATAAGATTCTATGGTAACTTCAATC-TGACT
* * * * *
81971868 CCACTGCAACTTCAGGGAGATAAGACTCGCTATGGTAGA-TTCAATCTAACC
1 -CACTGCAACTTTAGAGAGATAAGA-T-TCTATGGTA-ACTTCAATCTGACT
* * * * *
81971919 CACCGCAACTTCAG-GGGTATAGGA-T-T-T-GTAGCTTC-ATCTTG-CT
1 CACTGCAACTTTAGAGAG-ATAAGATTCTATGGTAACTTCAATC-TGACT
*
81971962 CCACTGCAACTTTAGAGAGATAACATTCGCTATGGTAACTTCAATCTGACT
1 -CACTGCAACTTTAGAGAGATAAGATT--CTATGGTAACTTCAATCTGACT
81972013 CACTGCAACTTTAGAG
1 CACTGCAACTTTAGAG
81972029 GTATAGGATT
Statistics
Matches: 352, Mismatches: 70, Indels: 128
0.64 0.13 0.23
Matches are distributed among these distances:
43 20 0.06
44 123 0.35
45 18 0.05
46 5 0.01
48 5 0.01
49 18 0.05
50 142 0.40
51 21 0.06
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (48 bp):
CACTGCAACTTTAGAGAGATAAGATTCTATGGTAACTTCAATCTGACT
Found at i:81971891 original size:282 final size:282
Alignment explanation
Indices: 81971440--81972237 Score: 1260
Period size: 282 Copynumber: 2.8 Consensus size: 282
81971430 TTATGGTTTT
* * * * * *
81971440 AATCTGACCCACTGTAACTTCA-AGGATATAGGATTTGTAGCTTCATCTTGCTCCACTGCAAATT
1 AATCTGACTCACTGCAACTTTAGAGG-TATAGGATTTGTAGCTTTATCTTGCTTCACTGCAAGTT
* ** *
81971504 CAGGGAGATAAGATTCGCTATGGTA-ATTTCAATCTAACCCACTGCAACTTTAGGGGTATAGGAT
65 CAAGGAGATAAGATTCATTATGGTAGA-TTCAATCCAACCCACTGCAACTTTAGGGGTATAGGAT
** * * * *
81971568 TTGTAGCTTCATCTTGCTCCACTGTAACTTCAGAGAGATAAGATTCGTTATGGTA-ACTTCAATC
129 TTGTAGCTTCATCTTTATCCACTGCAACTTCAGGGAGATAAGACTCGCTATGGTAGA-TTCAATC
* * * * *
81971632 CGACTCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGTAACTTTAGAG
193 TGACCCACCGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAGAG
81971697 AGATAACATTCACTATGGTAACTTC
258 AGATAACATTCACTATGGTAACTTC
*
81971722 AATCTGACTCACTGCAACTTTAGAGGTATAGGATTTGTAGCTTTATCTTGTTTCACTGCAAGTTC
1 AATCTGACTCACTGCAACTTTAGAGGTATAGGATTTGTAGCTTTATCTTGCTTCACTGCAAGTTC
81971787 AAGGAGATAAGATTCATTATGGTAGATTCAATCCAACCCACTGCAACTTTAGGGGTATAGGATTT
66 AAGGAGATAAGATTCATTATGGTAGATTCAATCCAACCCACTGCAACTTTAGGGGTATAGGATTT
*
81971852 GTAGCTTCATCTTTATCCACTGCAACTTCAGGGAGATAAGACTCGCTATGGTAGATTCAATCTAA
131 GTAGCTTCATCTTTATCCACTGCAACTTCAGGGAGATAAGACTCGCTATGGTAGATTCAATCTGA
81971917 CCCACCGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAGAGAGA
196 CCCACCGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAGAGAGA
*
81971982 TAACATTCGCTATGGTAACTTC
261 TAACATTCACTATGGTAACTTC
81972004 AATCTGACTCACTGCAACTTTAGAGGTATAGGATTTGTAGCTTTATCTTGCTTCACTGCAAGTTC
1 AATCTGACTCACTGCAACTTTAGAGGTATAGGATTTGTAGCTTTATCTTGCTTCACTGCAAGTTC
* *
81972069 AAGGAGATAAGATTCATTATGGTAGATTCAATCCAACCGACTGCAACTTTAGAGGTATAGGATTT
66 AAGGAGATAAGATTCATTATGGTAGATTCAATCCAACCCACTGCAACTTTAGGGGTATAGGATTT
* * *
81972134 GTAGCTTCATCTTTATCCACTACAACTTCAGGGAGATAAGACTCGCTATGGTAGAGTCAATTTGA
131 GTAGCTTCATCTTTATCCACTGCAACTTCAGGGAGATAAGACTCGCTATGGTAGATTCAATCTGA
** *
81972199 CCCACCATAACTTCAGGGGAATAGGATTTGTAGCTTCAT
196 CCCACCGCAACTTCAGGGGTATAGGATTTGTAGCTTCAT
81972238 TGTAATACCC
Statistics
Matches: 479, Mismatches: 34, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
282 474 0.99
283 5 0.01
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.32
Consensus pattern (282 bp):
AATCTGACTCACTGCAACTTTAGAGGTATAGGATTTGTAGCTTTATCTTGCTTCACTGCAAGTTC
AAGGAGATAAGATTCATTATGGTAGATTCAATCCAACCCACTGCAACTTTAGGGGTATAGGATTT
GTAGCTTCATCTTTATCCACTGCAACTTCAGGGAGATAAGACTCGCTATGGTAGATTCAATCTGA
CCCACCGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAGAGAGA
TAACATTCACTATGGTAACTTC
Found at i:81972736 original size:31 final size:32
Alignment explanation
Indices: 81972688--81972759 Score: 87
Period size: 31 Copynumber: 2.3 Consensus size: 32
81972678 GATATTTTGA
*
81972688 TATTTTA-TAATTATTTAATTAGATA-AATAT
1 TATTTTATTAATTATTTAATAAGATATAATAT
**
81972718 TATTTTATTAA-TATTTTAATAAGATATTTTAT
1 TATTTTATTAATTA-TTTAATAAGATATAATAT
81972750 TATTTTATTA
1 TATTTTATTA
81972760 GTATATAAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
30 9 0.25
31 14 0.39
32 13 0.36
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (32 bp):
TATTTTATTAATTATTTAATAAGATATAATAT
Found at i:81975000 original size:46 final size:46
Alignment explanation
Indices: 81974933--81975195 Score: 375
Period size: 46 Copynumber: 5.7 Consensus size: 46
81974923 TGACAACCTG
81974933 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
81974979 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
81975025 TGTGTAAGACCATGGTTGAAAGATGCCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* * *
81975071 TGTGTAAGACCATGGTCGAAAGATACCATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* ** * * *
81975117 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATAACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
* * * *
81975163 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
81975196 TCAAGTCAAA
Statistics
Matches: 198, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 197 0.99
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.21
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:81975126 original size:138 final size:130
Alignment explanation
Indices: 81974884--81975185 Score: 390
Period size: 138 Copynumber: 2.3 Consensus size: 130
81974874 AGTGTGCTCT
*
81974884 CTGATATGAAATGTGTAAGACTATGGTTGAAAGATACCATGACAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGTGTGTAAGACCATGGT
* * * **
81974949 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 CGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* *
81975014 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATGCCATGGCAACCTGATATGAGATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACC-----T--G-TGTGTAAG
*
81975079 ACCATGGTCGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACC
58 ACCATGGTCGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGACCATGGTTGAAAGATACC
81975144 ATGGCAAC
123 ATGGCAAC
* * * * *
81975152 ATAACA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGA
81975186 CACTATGGCA
Statistics
Matches: 149, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
130 44 0.30
135 1 0.01
137 2 0.01
138 102 0.68
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGTGTGTAAGACCATGGT
CGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:81976055 original size:94 final size:94
Alignment explanation
Indices: 81975880--81976132 Score: 285
Period size: 94 Copynumber: 2.7 Consensus size: 94
81975870 TTCATCTTGC
* * ** * * * *
81975880 TCCACTGTAGCTTTAGGGAGATAAGATTCATTATGGTAACTTT-AATACAACCCACTACAACTTT
1 TCCACTGCAACTTTAGGGAGATAAGATTCACCATTGTAA-TTTCAATCCGACCCACTACAACTTC
* * *
81975944 AAGGGTATAGGATTTGTAGCTTCAATC-CAA
65 AAAGGTACAGGAATTGTAGCTTC-ATCTCAA
* *
81975974 TCCACTGCAACTTTAGGGAGATAAGATTCACCATTGTAATTTCATTCCGACCCACTGCAACTTCA
1 TCCACTGCAACTTTAGGGAGATAAGATTCACCATTGTAATTTCAATCCGACCCACTACAACTTCA
***
81976039 AAGGTACAGGAATTGTAGCTTCATCTTGC
66 AAGGTACAGGAATTGTAGCTTCATCTCAA
* ** * *
81976068 TCCACTGCAACTTCAGGGAGATAAGATTTGCCATTGTAGTTTCAATCTGACCCACTACAACTTCA
1 TCCACTGCAACTTTAGGGAGATAAGATTCACCATTGTAATTTCAATCCGACCCACTACAACTTCA
81976133 GGGGTATAAG
Statistics
Matches: 134, Mismatches: 23, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
93 6 0.04
94 128 0.96
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (94 bp):
TCCACTGCAACTTTAGGGAGATAAGATTCACCATTGTAATTTCAATCCGACCCACTACAACTTCA
AAGGTACAGGAATTGTAGCTTCATCTCAA
Found at i:81984812 original size:3 final size:3
Alignment explanation
Indices: 81984796--81984908 Score: 54
Period size: 3 Copynumber: 37.0 Consensus size: 3
81984786 TAGTGAATAC
* * * *
81984796 AAT AAT AAGA AAT AAT AAT AAC AAT AA- AAA AATT CAATT AAT AAT ACT
1 AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AA-T -AA-T AAT AAT AAT
* * * * * *
81984844 ATAT GAT AAT AAT AAT ACT AAT AGT GA- AAT AAT -AT AAA AAT GTAT
1 A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
81984889 AAT AAT AAT AAT AAT -AT AAT
1 AAT AAT AAT AAT AAT AAT AAT
81984909 TACATTCATA
Statistics
Matches: 82, Mismatches: 19, Indels: 18
0.69 0.16 0.15
Matches are distributed among these distances:
2 7 0.09
3 64 0.78
4 7 0.09
5 4 0.05
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:81984858 original size:19 final size:19
Alignment explanation
Indices: 81984834--81984898 Score: 64
Period size: 19 Copynumber: 3.4 Consensus size: 19
81984824 AAAATTCAAT
81984834 TAATAATACTATATGATAA
1 TAATAATACTATATGATAA
81984853 TAATAATACTAATAGTGA-AA
1 TAATAATACT-ATA-TGATAA
* *
81984873 TAAT-ATA-AAAATGTATAA
1 TAATAATACTATATG-ATAA
81984891 TAATAATA
1 TAATAATA
81984899 ATAATATAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
16 2 0.05
17 3 0.08
18 6 0.15
19 16 0.41
20 9 0.23
21 3 0.08
ACGTcount: A:0.57, C:0.03, G:0.06, T:0.34
Consensus pattern (19 bp):
TAATAATACTATATGATAA
Found at i:81986435 original size:25 final size:25
Alignment explanation
Indices: 81986381--81986435 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
81986371 GGCATCAACA
** *
81986381 TTATTTATTATTAAGTTTATGTATG
1 TTATTTATTATTAAGAATATGTATC
*
81986406 ATATTTATTATTATAGAATAT-TATC
1 TTATTTATTATTA-AGAATATGTATC
81986431 TTATT
1 TTATT
81986436 ATAAAATAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.58
Consensus pattern (25 bp):
TTATTTATTATTAAGAATATGTATC
Found at i:81991123 original size:12 final size:12
Alignment explanation
Indices: 81991106--81991137 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
81991096 GCATACTAGA
81991106 TTTTTTTTCTTT
1 TTTTTTTTCTTT
*
81991118 TTTTTTTTGTTT
1 TTTTTTTTCTTT
81991130 TTTTTTTT
1 TTTTTTTT
81991138 TGGGGGGGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.03, G:0.03, T:0.94
Consensus pattern (12 bp):
TTTTTTTTCTTT
Found at i:81991124 original size:13 final size:13
Alignment explanation
Indices: 81991106--81991139 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
81991096 GCATACTAGA
*
81991106 TTTTTTTT-CTTT
1 TTTTTTTTGTTTT
81991118 TTTTTTTTGTTTT
1 TTTTTTTTGTTTT
81991131 TTTTTTTTG
1 TTTTTTTTG
81991140 GGGGGGGGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 8 0.40
13 12 0.60
ACGTcount: A:0.00, C:0.03, G:0.06, T:0.91
Consensus pattern (13 bp):
TTTTTTTTGTTTT
Found at i:81995367 original size:10 final size:9
Alignment explanation
Indices: 81995352--81995428 Score: 52
Period size: 10 Copynumber: 8.6 Consensus size: 9
81995342 TTATTTATTT
81995352 ATTTTTTAAA
1 ATTTTTT-AA
81995362 ATTTTTTAA
1 ATTTTTTAA
81995371 A--TTTTAA
1 ATTTTTTAA
*
81995378 A-TTTTGAA
1 ATTTTTTAA
81995386 ATTTTTATAA
1 ATTTTT-TAA
*
81995396 ATATTTTAA
1 ATTTTTTAA
* **
81995405 AATTTAAAA
1 ATTTTTTAA
*
81995414 ATTATATTAA
1 ATT-TTTTAA
81995424 ATTTT
1 ATTTT
81995429 ACATTTTTTT
Statistics
Matches: 51, Mismatches: 12, Indels: 9
0.71 0.17 0.12
Matches are distributed among these distances:
7 7 0.14
8 6 0.12
9 18 0.35
10 20 0.39
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (9 bp):
ATTTTTTAA
Found at i:81995375 original size:18 final size:18
Alignment explanation
Indices: 81995354--81995428 Score: 66
Period size: 19 Copynumber: 4.2 Consensus size: 18
81995344 ATTTATTTAT
81995354 TTTTTAAAATTTTTTAAA
1 TTTTTAAAATTTTTTAAA
*
81995372 -TTTT-AAA-TTTTGAAA
1 TTTTTAAAATTTTTTAAA
*
81995387 TTTTTATAAATATTTTAAA
1 TTTTTA-AAATTTTTTAAA
* * *
81995406 ATTTAAAAATTATATTAAA
1 TTTTTAAAATT-TTTTAAA
81995425 TTTT
1 TTTT
81995429 ACATTTTTTT
Statistics
Matches: 44, Mismatches: 8, Indels: 9
0.72 0.13 0.15
Matches are distributed among these distances:
15 7 0.16
16 7 0.16
17 4 0.09
18 7 0.16
19 19 0.43
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (18 bp):
TTTTTAAAATTTTTTAAA
Found at i:81995424 original size:28 final size:27
Alignment explanation
Indices: 81995371--81995429 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
81995361 AATTTTTTAA
* * * *
81995371 ATTTTAAATTTTGAAATTTTTATAAAT
1 ATTTTAAAATTTAAAAATTATATAAAT
*
81995398 ATTTTAAAATTTAAAAATTATATTAA-
1 ATTTTAAAATTTAAAAATTATATAAAT
81995424 ATTTTA
1 ATTTTA
81995430 CATTTTTTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 6 0.22
27 21 0.78
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (27 bp):
ATTTTAAAATTTAAAAATTATATAAAT
Found at i:81997432 original size:17 final size:16
Alignment explanation
Indices: 81997402--81997435 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
81997392 ACATAAAAAA
81997402 TATTTTTTAATTATTT
1 TATTTTTTAATTATTT
*
81997418 TATTTATTTATTTATTT
1 TATTT-TTTAATTATTT
81997435 T
1 T
81997436 TACATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (16 bp):
TATTTTTTAATTATTT
Found at i:81999420 original size:26 final size:26
Alignment explanation
Indices: 81999364--81999421 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
81999354 TAAAATTGAC
* *
81999364 AATTTTACCATCGATAAAATTTTACC
1 AATTTTACCACCGATAAAATTTTACA
* *
81999390 GATTTTACC-CCGATAAAATTTTGAGA
1 AATTTTACCACCGATAAAATTTT-ACA
81999416 AATTTT
1 AATTTT
81999422 GTTCAATATG
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 12 0.46
26 14 0.54
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.40
Consensus pattern (26 bp):
AATTTTACCACCGATAAAATTTTACA
Found at i:81999588 original size:6 final size:6
Alignment explanation
Indices: 81999554--81999586 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
81999544 GGGTTGCAAG
*
81999554 TTTTCA TTTTCA TTTTCA TTTTCA TTTCCA TTT
1 TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA TTT
81999587 CCTTTTTCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.15, C:0.18, G:0.00, T:0.67
Consensus pattern (6 bp):
TTTTCA
Found at i:81999593 original size:18 final size:18
Alignment explanation
Indices: 81999554--81999594 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
81999544 GGGTTGCAAG
* *
81999554 TTTTCATTTTCATTTTCA
1 TTTTCATTTCCATTTCCA
*
81999572 TTTTCATTTCCATTTCCT
1 TTTTCATTTCCATTTCCA
81999590 TTTTC
1 TTTTC
81999595 GGAAACCTAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.12, C:0.22, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTTCATTTCCATTTCCA
Found at i:82002875 original size:32 final size:32
Alignment explanation
Indices: 82002834--82002900 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
82002824 TAAAAATGAG
*
82002834 ATAAGATACCTTATCATTGTGTGTTGGGGTAT
1 ATAAGATACCTTATCATTGGGTGTTGGGGTAT
82002866 ATAAGATACCTTATCATTGGGTGTTGGGGTAT
1 ATAAGATACCTTATCATTGGGTGTTGGGGTAT
82002898 ATA
1 ATA
82002901 TAGGGGGAGG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.27, C:0.09, G:0.25, T:0.39
Consensus pattern (32 bp):
ATAAGATACCTTATCATTGGGTGTTGGGGTAT
Found at i:82010816 original size:23 final size:23
Alignment explanation
Indices: 82010790--82010833 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
82010780 AAAAAGGAAA
82010790 TCCACTTAATCTTGTTCAGAATG
1 TCCACTTAATCTTGTTCAGAATG
82010813 TCCACTTAATCTTGTTCAGAA
1 TCCACTTAATCTTGTTCAGAA
82010834 AGGATTAGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.39
Consensus pattern (23 bp):
TCCACTTAATCTTGTTCAGAATG
Found at i:82010996 original size:3 final size:3
Alignment explanation
Indices: 82010990--82011053 Score: 94
Period size: 3 Copynumber: 21.3 Consensus size: 3
82010980 GTTGAAATTG
* *
82010990 ATT ATT ATT ATT ATT ATT ATT AGTC CTT -TT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT
82011035 ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT A
82011054 GTCCTTTTAT
Statistics
Matches: 56, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
2 2 0.04
3 53 0.95
4 1 0.02
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:82011063 original size:15 final size:14
Alignment explanation
Indices: 82010991--82011063 Score: 55
Period size: 15 Copynumber: 5.3 Consensus size: 14
82010981 TTGAAATTGA
*
82010991 TTATTATTAT--TA
1 TTATTATTATCCTT
82011003 TTATTATTAGTCCTT
1 TTATTATTA-TCCTT
**
82011018 TTATTATTATTATT
1 TTATTATTATCCTT
*
82011032 ATTATTATTAT--TA
1 -TTATTATTATCCTT
82011045 TTATTATTAGTCCTT
1 TTATTATTA-TCCTT
82011060 TTAT
1 TTAT
82011064 AAATTTCACT
Statistics
Matches: 49, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
12 18 0.37
13 3 0.06
14 3 0.06
15 25 0.51
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.64
Consensus pattern (14 bp):
TTATTATTATCCTT
Found at i:82014711 original size:21 final size:22
Alignment explanation
Indices: 82014668--82014712 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
82014658 ATTAATAAAA
*
82014668 TTTAAATATAAAAAGATTGAAG
1 TTTAAATATAAAAAAATTGAAG
82014690 TTTAAA-ATAATAAAAATT-AAG
1 TTTAAATATAA-AAAAATTGAAG
82014711 TT
1 TT
82014713 ATTATAGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.36
Consensus pattern (22 bp):
TTTAAATATAAAAAAATTGAAG
Found at i:82015306 original size:25 final size:23
Alignment explanation
Indices: 82015277--82015341 Score: 66
Period size: 25 Copynumber: 2.9 Consensus size: 23
82015267 AATAAAAAAC
*
82015277 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAA-CAAATACA
82015302 TTTAAAACATAAAAACAAAT--A
1 TTTAAAACATAAAAACAAATACA
*
82015323 -TTAAAACA-AAAAATAAATA
1 TTTAAAACATAAAAACAAATA
82015342 AAAAATAAGA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 9 0.24
20 8 0.22
21 1 0.03
23 5 0.14
24 3 0.08
25 11 0.30
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (23 bp):
TTTAAAACATAAAAACAAATACA
Found at i:82015340 original size:19 final size:20
Alignment explanation
Indices: 82015303--82015341 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
82015293 TCAAATACAT
82015303 TTAAAACATAAAAACAAATA
1 TTAAAACATAAAAACAAATA
*
82015323 TTAAAACA-AAAAATAAATA
1 TTAAAACATAAAAACAAATA
82015342 AAAAATAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.21
Consensus pattern (20 bp):
TTAAAACATAAAAACAAATA
Found at i:82018420 original size:37 final size:37
Alignment explanation
Indices: 82018370--82018441 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 37
82018360 ATCGTCGTAT
* *
82018370 CTTGAAACATGAGGAAAATTCTAGCGGACTATCATAA
1 CTTGAAACATGAGGAAAAGTCCAGCGGACTATCATAA
* * *
82018407 CTTGAAGCATGAGGACAAGTCCAGCGGACTGTCAT
1 CTTGAAACATGAGGAAAAGTCCAGCGGACTATCAT
82018442 TGTAACAACC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (37 bp):
CTTGAAACATGAGGAAAAGTCCAGCGGACTATCATAA
Found at i:82026094 original size:13 final size:13
Alignment explanation
Indices: 82026076--82026100 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82026066 AATATTATTT
82026076 TATGTGTTTAAAG
1 TATGTGTTTAAAG
82026089 TATGTGTTTAAA
1 TATGTGTTTAAA
82026101 CATGTGTGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (13 bp):
TATGTGTTTAAAG
Found at i:82042773 original size:29 final size:29
Alignment explanation
Indices: 82042713--82042791 Score: 76
Period size: 28 Copynumber: 2.8 Consensus size: 29
82042703 GTAAAAATAT
* *
82042713 TTTTTATATTTTTAAAATAATTTTAATGA
1 TTTTTAAAATTTTAAAATAATTTTAATGA
*
82042742 -TTTTAAAATTTTAAAAGTAATTTT-TTGAA
1 TTTTTAAAATTTTAAAA-TAATTTTAATG-A
82042771 TTTTTTAAAA-TTTAAAA-AATT
1 -TTTTTAAAATTTTAAAATAATT
82042792 AATTAAATGT
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
28 20 0.47
29 8 0.19
30 7 0.16
31 8 0.19
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (29 bp):
TTTTTAAAATTTTAAAATAATTTTAATGA
Found at i:82044168 original size:79 final size:79
Alignment explanation
Indices: 82044037--82044192 Score: 312
Period size: 79 Copynumber: 2.0 Consensus size: 79
82044027 TACCACCACC
82044037 TACCATTATACTTGTTTTCTAGAGTCTGCTCCAAATTTTCTCTCTACCATCTCTTCTCAATATCT
1 TACCATTATACTTGTTTTCTAGAGTCTGCTCCAAATTTTCTCTCTACCATCTCTTCTCAATATCT
82044102 CGTTTTGTTACAAT
66 CGTTTTGTTACAAT
82044116 TACCATTATACTTGTTTTCTAGAGTCTGCTCCAAATTTTCTCTCTACCATCTCTTCTCAATATCT
1 TACCATTATACTTGTTTTCTAGAGTCTGCTCCAAATTTTCTCTCTACCATCTCTTCTCAATATCT
82044181 CGTTTTGTTACA
66 CGTTTTGTTACA
82044193 TTGTAACGTC
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 77 1.00
ACGTcount: A:0.21, C:0.26, G:0.08, T:0.46
Consensus pattern (79 bp):
TACCATTATACTTGTTTTCTAGAGTCTGCTCCAAATTTTCTCTCTACCATCTCTTCTCAATATCT
CGTTTTGTTACAAT
Found at i:82049569 original size:27 final size:27
Alignment explanation
Indices: 82049515--82049572 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
82049505 AAAATAACTA
* *
82049515 AAAATAATTTGTTTAGCAATACGAGAG
1 AAAATAATTGGTTTAGAAATACGAGAG
*
82049542 AAAATAATTGGTTTAAGAAAT-CGGGAG
1 AAAATAATTGGTTT-AGAAATACGAGAG
82049569 AAAA
1 AAAA
82049573 AAAATGAGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 22 0.81
28 5 0.19
ACGTcount: A:0.48, C:0.05, G:0.21, T:0.26
Consensus pattern (27 bp):
AAAATAATTGGTTTAGAAATACGAGAG
Found at i:82051188 original size:45 final size:45
Alignment explanation
Indices: 82051116--82051224 Score: 157
Period size: 45 Copynumber: 2.4 Consensus size: 45
82051106 AAAAATCCGG
*
82051116 AACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCAAT
1 AACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCAAT
* **
82051161 AAC-GATAACAGTAACAGTATTCGACACACAAAGTGCCGAATCGGT
1 AACAG-TAACAGTAACAGTATTCAACACACAAAGTGCCGAATCAAT
*
82051206 AACAGTAACGGTAACAGTA
1 AACAGTAACAGTAACAGTA
82051225 ACAGTAGTCG
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
44 1 0.02
45 55 0.96
46 1 0.02
ACGTcount: A:0.44, C:0.20, G:0.17, T:0.18
Consensus pattern (45 bp):
AACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCAAT
Found at i:82051219 original size:12 final size:12
Alignment explanation
Indices: 82051202--82051226 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
82051192 AGTGCCGAAT
82051202 CGGTAACAGTAA
1 CGGTAACAGTAA
82051214 CGGTAACAGTAA
1 CGGTAACAGTAA
82051226 C
1 C
82051227 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:82051358 original size:22 final size:24
Alignment explanation
Indices: 82051336--82051392 Score: 57
Period size: 22 Copynumber: 2.5 Consensus size: 24
82051326 ATAGGGTATT
*
82051336 TAACTCACTTTTCAGTAT-AATTTC
1 TAACTCACTTTTCAGTATCAA-TTA
*
82051360 TATCTCA--TTTCAGTATCAATTA
1 TAACTCACTTTTCAGTATCAATTA
*
82051382 TAATTCACTTT
1 TAACTCACTTT
82051393 CTCAATTCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
22 16 0.62
23 2 0.08
24 8 0.31
ACGTcount: A:0.30, C:0.19, G:0.04, T:0.47
Consensus pattern (24 bp):
TAACTCACTTTTCAGTATCAATTA
Found at i:82052380 original size:12 final size:12
Alignment explanation
Indices: 82052363--82052401 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
82052353 TAGACTCAAT
82052363 AATATTTAATTC
1 AATATTTAATTC
*
82052375 AATATTTTATTC
1 AATATTTAATTC
82052387 -ATACTTTAATTC
1 AATA-TTTAATTC
82052399 AAT
1 AAT
82052402 TTCTACAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
11 3 0.13
12 18 0.78
13 2 0.09
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.51
Consensus pattern (12 bp):
AATATTTAATTC
Found at i:82052987 original size:17 final size:18
Alignment explanation
Indices: 82052962--82052996 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
82052952 TTTCTTTTTC
82052962 ATTTCTTTTATTTCATTT
1 ATTTCTTTTATTTCATTT
82052980 ATTT-TTTTATTTCATTT
1 ATTTCTTTTATTTCATTT
82052997 CTTTATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.17, C:0.09, G:0.00, T:0.74
Consensus pattern (18 bp):
ATTTCTTTTATTTCATTT
Found at i:82052997 original size:22 final size:22
Alignment explanation
Indices: 82052971--82053012 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
82052961 CATTTCTTTT
82052971 ATTTCATTTATTTTT-TTATTTC
1 ATTTC-TTTATTTTTATTATTTC
82052993 ATTTCTTTATTTTTATTATT
1 ATTTCTTTATTTTTATTATT
82053013 AAAATATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (22 bp):
ATTTCTTTATTTTTATTATTTC
Found at i:82059492 original size:6 final size:6
Alignment explanation
Indices: 82059481--82059511 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
82059471 CCCACTACTC
*
82059481 CCTCTT CCTCTT CATCTT CCTCTT CCTCTT C
1 CCTCTT CCTCTT CCTCTT CCTCTT CCTCTT C
82059512 TTCACTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.03, C:0.48, G:0.00, T:0.48
Consensus pattern (6 bp):
CCTCTT
Found at i:82064572 original size:28 final size:28
Alignment explanation
Indices: 82064503--82064573 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
82064493 CCCTTTAGGA
* *
82064503 CCAATCTCATTCACATGGCCCATCAGGC
1 CCAATCACATTCATATGGCCCATCAGGC
* *
82064531 CCAATCACATTCATATGGCCCGTCGGGC
1 CCAATCACATTCATATGGCCCATCAGGC
*
82064559 TCAATCACATTCATA
1 CCAATCACATTCATA
82064574 GTTATGCAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.27, C:0.35, G:0.14, T:0.24
Consensus pattern (28 bp):
CCAATCACATTCATATGGCCCATCAGGC
Found at i:82064793 original size:16 final size:16
Alignment explanation
Indices: 82064772--82064803 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
82064762 GCCAAACTTC
*
82064772 TGGCTTTTCGGTATTT
1 TGGCTTTTCGGCATTT
82064788 TGGCTTTTCGGCATTT
1 TGGCTTTTCGGCATTT
82064804 CGGGATTTGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.16, G:0.25, T:0.53
Consensus pattern (16 bp):
TGGCTTTTCGGCATTT
Found at i:82066228 original size:69 final size:71
Alignment explanation
Indices: 82066117--82066416 Score: 268
Period size: 69 Copynumber: 4.3 Consensus size: 71
82066107 TTTGCTCACT
* * * ** * * * *
82066117 CTAACTGTATTGAAGGCTGCGATTCTTCACCTACGAGCCTTAATATGATAGCTGAGAGCTT-T-G
1 CTAACTGTGTTGGAGGTTGCGGCTCTTCACCTGCGAGCCTTAATATGACAGTTGAGAGCTTGTAA
*
82066180 CTCTCA
66 CTCTCG
* * * * * * * *
82066186 CTAAATGTGTTGGAGGTTGCGGCTTTTCAGCTGCAAGCCTTAATGTAATAGTTGGGAGCTTGTAA
1 CTAACTGTGTTGGAGGTTGCGGCTCTTCACCTGCGAGCCTTAATATGACAGTTGAGAGCTTGTAA
82066251 CTCTCG
66 CTCTCG
* * ** * * *
82066257 CTAACTGTATTGGAGGCTATGGCTCTTCACCTGCGAGCCTTAATATGACAGGTGGGAGCTT-TGC
1 CTAACTGTGTTGGAGGTTGCGGCTCTTCACCTGCGAGCCTTAATATGACAGTTGAGAGCTTGT-A
82066321 ACT-T-G
65 ACTCTCG
* * * * * * *
82066326 GTAACGGTGTTAGAGGTAGCGACTCTTCACCTACGAGCCTTAATATGACAGTTGAAAGCTTGTAA
1 CTAACTGTGTTGGAGGTTGCGGCTCTTCACCTGCGAGCCTTAATATGACAGTTGAGAGCTTGTAA
82066391 CTCTCG
66 CTCTCG
82066397 CTAACTGTGTTGGAGGTTGC
1 CTAACTGTGTTGGAGGTTGC
82066417 AGTTTTTATC
Statistics
Matches: 178, Mismatches: 47, Indels: 10
0.76 0.20 0.04
Matches are distributed among these distances:
69 99 0.56
70 5 0.03
71 74 0.42
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (71 bp):
CTAACTGTGTTGGAGGTTGCGGCTCTTCACCTGCGAGCCTTAATATGACAGTTGAGAGCTTGTAA
CTCTCG
Found at i:82066369 original size:140 final size:140
Alignment explanation
Indices: 82066117--82066412 Score: 340
Period size: 140 Copynumber: 2.1 Consensus size: 140
82066107 TTTGCTCACT
* * * * *
82066117 CTAACTGTATTGAAGGCTGCGATTCTTCACCTACGAGCCTTAATATGATAGCTGAGAGCTTTGCT
1 CTAACTGTATTGGAGGCTACGACTCTTCACCTACGAGCCTTAATATGACAGCTGAGAGCTTTGCA
* * * * * * * * * **
82066182 CTCACTAAATGTGTTGGAGGTTGCGGCTTTTCAGCTGCAAGCCTTAATGTAATAGTTGGGAGCTT
66 CTCACTAAAGGTGTTAGAGGTAGCGACTCTTCACCTACAAGCCTTAATATAACAGTTGAAAGCTT
82066247 GTAACTCTCG
131 GTAACTCTCG
* * * * *
82066257 CTAACTGTATTGGAGGCTATGGCTCTTCACCTGCGAGCCTTAATATGACAGGTGGGAGCTTTGCA
1 CTAACTGTATTGGAGGCTACGACTCTTCACCTACGAGCCTTAATATGACAGCTGAGAGCTTTGCA
*** * * *
82066322 CTTGGTAACGGTGTTAGAGGTAGCGACTCTTCACCTACGAGCCTTAATATGACAGTTGAAAGCTT
66 CTCACTAAAGGTGTTAGAGGTAGCGACTCTTCACCTACAAGCCTTAATATAACAGTTGAAAGCTT
82066387 GTAACTCTCG
131 GTAACTCTCG
*
82066397 CTAACTGTGTTGGAGG
1 CTAACTGTATTGGAGG
82066413 TTGCAGTTTT
Statistics
Matches: 128, Mismatches: 28, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
140 128 1.00
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (140 bp):
CTAACTGTATTGGAGGCTACGACTCTTCACCTACGAGCCTTAATATGACAGCTGAGAGCTTTGCA
CTCACTAAAGGTGTTAGAGGTAGCGACTCTTCACCTACAAGCCTTAATATAACAGTTGAAAGCTT
GTAACTCTCG
Found at i:82068134 original size:24 final size:23
Alignment explanation
Indices: 82068107--82068163 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
82068097 TATATTATCA
* *
82068107 ACATAGTGCAAATTAAGCTCGCAC
1 ACATAGTGCAAACTAAAC-CGCAC
*
82068131 ACATAGTGCCATACTAAACCGCAC
1 ACATAGTG-CAAACTAAACCGCAC
82068155 ACATAGTGC
1 ACATAGTGC
82068164 CTGAAATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
23 1 0.03
24 21 0.72
25 7 0.24
ACGTcount: A:0.37, C:0.28, G:0.16, T:0.19
Consensus pattern (23 bp):
ACATAGTGCAAACTAAACCGCAC
Found at i:82068213 original size:23 final size:23
Alignment explanation
Indices: 82068187--82068231 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
82068177 TCATGCATCG
82068187 CATTCAAATCTGCACACATAGTT
1 CATTCAAATCTGCACACATAGTT
* *
82068210 CATTTAATTCTGCACACATAGT
1 CATTCAAATCTGCACACATAGT
82068232 GCCAATGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.33, C:0.24, G:0.09, T:0.33
Consensus pattern (23 bp):
CATTCAAATCTGCACACATAGTT
Found at i:82068448 original size:94 final size:94
Alignment explanation
Indices: 82068192--82068649 Score: 744
Period size: 94 Copynumber: 5.0 Consensus size: 94
82068182 CATCGCATTC
* * *
82068192 AAATCTGCACACATAGT-TCATTTAATTCTGCACACATAGTGCCAATGTTAACATCA-TATAAT-
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAAC-TCATTATAATA
82068254 --GCAA-TTACTTAATTCAAATAGCATATA
65 AGGCAATTTACTTAATTCAAATAGCATATA
*
82068281 AAATCTACACACAAAGT-ACATTTAATTCCGCACACATAGTGCC-ATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
82068344 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
82068373 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
82068438 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
82068467 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTAT-ATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
82068531 GGCAATTTA-TTAATTC-AATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
* *
82068558 AAATCTTCACACAAAGTGACATTTAATTCCGCACACATA-TGCCAATGTTAACTCATTATAATAT
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
* *
82068622 GGAAACTTACTTAATTCAAATA-CATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
82068650 CGGTCACATT
Statistics
Matches: 350, Mismatches: 9, Indels: 17
0.93 0.02 0.05
Matches are distributed among these distances:
87 3 0.01
88 14 0.04
89 39 0.11
90 20 0.06
91 63 0.18
92 59 0.17
93 43 0.12
94 109 0.31
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.31
Consensus pattern (94 bp):
AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
GGCAATTTACTTAATTCAAATAGCATATA
Found at i:82076201 original size:19 final size:19
Alignment explanation
Indices: 82076177--82076215 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
82076167 CATGTCTCAA
82076177 ATTCGATATTTTAGTTAAT
1 ATTCGATATTTTAGTTAAT
82076196 ATTCGATATTTTAGTTAAT
1 ATTCGATATTTTAGTTAAT
82076215 A
1 A
82076216 GTTCTATCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.51
Consensus pattern (19 bp):
ATTCGATATTTTAGTTAAT
Found at i:82076320 original size:23 final size:24
Alignment explanation
Indices: 82076268--82076326 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
82076258 ACCAAATTCA
* *
82076268 CACACATAGTGCTAATTAAGCTCG
1 CACACATAGTGCTAACTAAACTCG
82076292 CACACATAGTGC-ATACTAAAC-CG
1 CACACATAGTGCTA-ACTAAACTCG
82076315 CACACATAGTGC
1 CACACATAGTGC
82076327 CTGAAATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
23 15 0.47
24 17 0.53
ACGTcount: A:0.36, C:0.29, G:0.15, T:0.20
Consensus pattern (24 bp):
CACACATAGTGCTAACTAAACTCG
Found at i:82076378 original size:24 final size:24
Alignment explanation
Indices: 82076351--82076400 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
82076341 CATGCATCGA
82076351 CATTCAAATCAGCACACATAGTGC
1 CATTCAAATCAGCACACATAGTGC
* * *
82076375 CATTTAATTCCGCACACATAGTGC
1 CATTCAAATCAGCACACATAGTGC
82076399 CA
1 CA
82076401 ATGTTAACTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.34, C:0.30, G:0.12, T:0.24
Consensus pattern (24 bp):
CATTCAAATCAGCACACATAGTGC
Found at i:82076473 original size:94 final size:94
Alignment explanation
Indices: 82076356--82076731 Score: 689
Period size: 94 Copynumber: 4.0 Consensus size: 94
82076346 ATCGACATTC
* * *
82076356 AAATCAGCACACATAGTGCCATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
82076421 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
82076450 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
*
82076515 GGCAATTTACTTAATTCAAATAGCATTTA
66 GGCAATTTACTTAATTCAAATAGCATATA
*
82076544 AAATCTGCACACAAAGTGACATTTAATTCCACACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
82076609 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
*
82076638 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAT
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
*
82076703 GGCAACTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
82076732 CGGTCACATT
Statistics
Matches: 273, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 273 1.00
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (94 bp):
AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
GGCAATTTACTTAATTCAAATAGCATATA
Found at i:82081436 original size:47 final size:47
Alignment explanation
Indices: 82081366--82081496 Score: 181
Period size: 47 Copynumber: 2.8 Consensus size: 47
82081356 CACAATCGAT
* * *
82081366 AAGTACCTATACCATAGCCCGTAGCCAAATCAAGGTAACTTATCCCG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCA
* * *
82081413 GAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCCTCTCA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCA
* * *
82081460 AAATACCTATATCATGGCTCGTAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
82081497 TTATTCGCAC
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 74 1.00
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.22
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCA
Found at i:82084134 original size:19 final size:19
Alignment explanation
Indices: 82084110--82084149 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
82084100 AAAATTCATT
82084110 TTAATTTTAATTTATACAC
1 TTAATTTTAATTTATACAC
*
82084129 TTAATTTTTATTTATACAC
1 TTAATTTTAATTTATACAC
82084148 TT
1 TT
82084150 GATTAAGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (19 bp):
TTAATTTTAATTTATACAC
Found at i:82086483 original size:13 final size:13
Alignment explanation
Indices: 82086465--82086501 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
82086455 AATTTAGTTC
82086465 ACACGGGCATGAG
1 ACACGGGCATGAG
*
82086478 ACACGGGCATGGG
1 ACACGGGCATGAG
*
82086491 ACACGGACATG
1 ACACGGGCATG
82086502 TCCCTTGATG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.30, C:0.24, G:0.38, T:0.08
Consensus pattern (13 bp):
ACACGGGCATGAG
Found at i:82088041 original size:15 final size:15
Alignment explanation
Indices: 82088023--82088054 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
82088013 CATTTCACTA
*
82088023 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
82088038 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
82088053 TT
1 TT
82088055 TACATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:82090636 original size:18 final size:18
Alignment explanation
Indices: 82090613--82090650 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
82090603 AGTGTCCCTC
82090613 CACCTTGGTGGTGCCTAA
1 CACCTTGGTGGTGCCTAA
82090631 CACCTTGGTGGTGCCTAA
1 CACCTTGGTGGTGCCTAA
82090649 CA
1 CA
82090651 AGTTTCCTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.18, C:0.29, G:0.26, T:0.26
Consensus pattern (18 bp):
CACCTTGGTGGTGCCTAA
Found at i:82098165 original size:12 final size:12
Alignment explanation
Indices: 82098150--82098188 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
82098140 AACCTAAACT
82098150 AAAAATGAAAAG
1 AAAAATGAAAAG
*
82098162 AAAAAAGAAAAG
1 AAAAATGAAAAG
*
82098174 AAAAAT-AAAAT
1 AAAAATGAAAAG
82098185 AAAA
1 AAAA
82098189 CCTAACCCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
11 8 0.33
12 16 0.67
ACGTcount: A:0.82, C:0.00, G:0.10, T:0.08
Consensus pattern (12 bp):
AAAAATGAAAAG
Found at i:82099919 original size:35 final size:35
Alignment explanation
Indices: 82099808--82099988 Score: 157
Period size: 35 Copynumber: 5.2 Consensus size: 35
82099798 TCGTGTTTCA
* **
82099808 GTTGGATTAGCTCTTATGAGTATTGATGTGTT-TCG
1 GTTGGATTAGCTCTTATGAGCATTGGCGTGTTAT-G
* * * * *
82099843 GTTGGATTAGTTCTTAAGAGAATTGGCGTATTACG
1 GTTGGATTAGCTCTTATGAGCATTGGCGTGTTATG
*
82099878 GTTGGATTAGTTCTTATGAGCATTGGCGTGTTATG
1 GTTGGATTAGCTCTTATGAGCATTGGCGTGTTATG
** * * **
82099913 CATGGATTGGCTCTAATGAGCATTGGCGTGTTACA
1 GTTGGATTAGCTCTTATGAGCATTGGCGTGTTATG
* * ** *
82099948 GTAGGACTAGCTCTTATGAGCACCGGTGTGTTATG
1 GTTGGATTAGCTCTTATGAGCATTGGCGTGTTATG
*
82099983 ATTGGA
1 GTTGGA
82099989 CACACCCATG
Statistics
Matches: 114, Mismatches: 31, Indels: 2
0.78 0.21 0.01
Matches are distributed among these distances:
35 114 1.00
ACGTcount: A:0.21, C:0.12, G:0.30, T:0.38
Consensus pattern (35 bp):
GTTGGATTAGCTCTTATGAGCATTGGCGTGTTATG
Found at i:82101005 original size:37 final size:37
Alignment explanation
Indices: 82100947--82101017 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
82100937 TACCTCGAAT
*
82100947 AATCCCCACACGTAGTTATCGGGTCTCACCCGGACAA
1 AATCCCCACACGTAGTCATCGGGTCTCACCCGGACAA
* *
82100984 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCCCCACACGTAGTCATCGGGTCTCACCCGGA
82101018 ATATATTTCT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.25, C:0.34, G:0.20, T:0.21
Consensus pattern (37 bp):
AATCCCCACACGTAGTCATCGGGTCTCACCCGGACAA
Found at i:82101216 original size:48 final size:48
Alignment explanation
Indices: 82101158--82101539 Score: 538
Period size: 48 Copynumber: 8.0 Consensus size: 48
82101148 ATATACACAC
* * * *
82101158 ATCTCCTACATATTGCTCATTAGCCATTCGGATTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
** *
82101206 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACTGCATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
82101254 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
82101302 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
82101350 ATCTCATACATATTTCATATTATCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
** *
82101398 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACTGCATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * **
82101446 TTCTCATACATATTTCATATTAGCCATTCTACTTTA-C-C--ATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
82101490 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
82101538 AT
1 AT
82101540 ATTTATCTTG
Statistics
Matches: 295, Mismatches: 35, Indels: 8
0.87 0.10 0.02
Matches are distributed among these distances:
44 36 0.12
45 1 0.00
46 2 0.01
48 256 0.87
ACGTcount: A:0.30, C:0.25, G:0.06, T:0.38
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:82106113 original size:8 final size:9
Alignment explanation
Indices: 82106082--82106113 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
82106072 ACCCCTAATT
82106082 GACTGAAAG
1 GACTGAAAG
82106091 GACTGAAAG
1 GACTGAAAG
82106100 GACTGAAA-
1 GACTGAAAG
82106108 GACTGA
1 GACTGA
82106114 TATATGCCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 6 0.26
9 17 0.74
ACGTcount: A:0.44, C:0.12, G:0.31, T:0.12
Consensus pattern (9 bp):
GACTGAAAG
Found at i:82107723 original size:42 final size:42
Alignment explanation
Indices: 82107660--82107768 Score: 139
Period size: 42 Copynumber: 2.5 Consensus size: 42
82107650 ACATATCAAC
* * * *
82107660 GCCATTGTCCCAAACAAGGTCTTACACGAAAT-TGATTAACAAT
1 GCCA-TGTCCCAGACATGGTCTTACACGAAATCTCAAT-ACAAT
*
82107703 GCCATGTCCCAGACATGGTCTTACACGTAATCTCAATACAAT
1 GCCATGTCCCAGACATGGTCTTACACGAAATCTCAATACAAT
82107745 GCCAATGTCCCAGACATGGTCTTA
1 GCC-ATGTCCCAGACATGGTCTTA
82107769 TATGTAATCA
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
42 32 0.54
43 27 0.46
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.26
Consensus pattern (42 bp):
GCCATGTCCCAGACATGGTCTTACACGAAATCTCAATACAAT
Found at i:82107776 original size:43 final size:43
Alignment explanation
Indices: 82107660--82107777 Score: 141
Period size: 43 Copynumber: 2.8 Consensus size: 43
82107650 ACATATCAAC
* * * * * *
82107660 GCCATTGTCCCAAACAAGGTCTTACACGAAAT-TGATTAACAAT
1 GCCAATGTCCCAGACATGGTCTTACACGTAATCTCAAT-ACAAT
82107703 GCC-ATGTCCCAGACATGGTCTTACACGTAATCTCAATACAAT
1 GCCAATGTCCCAGACATGGTCTTACACGTAATCTCAATACAAT
* *
82107745 GCCAATGTCCCAGACATGGTCTTATATGTAATC
1 GCCAATGTCCCAGACATGGTCTTACACGTAATC
82107778 ACATCTCAGT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
42 32 0.49
43 33 0.51
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.27
Consensus pattern (43 bp):
GCCAATGTCCCAGACATGGTCTTACACGTAATCTCAATACAAT
Found at i:82116330 original size:27 final size:27
Alignment explanation
Indices: 82116292--82116348 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
82116282 TAAGAGTATG
82116292 GGTGATAAATAGAAAGGTATCAATACA
1 GGTGATAAATAGAAAGGTATCAATACA
* * *
82116319 GGTGGTAAATAGAATGGTATCAGTACA
1 GGTGATAAATAGAAAGGTATCAATACA
82116346 GGT
1 GGT
82116349 ATGTACAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.40, C:0.07, G:0.28, T:0.25
Consensus pattern (27 bp):
GGTGATAAATAGAAAGGTATCAATACA
Found at i:82117103 original size:34 final size:33
Alignment explanation
Indices: 82117045--82117110 Score: 87
Period size: 34 Copynumber: 2.0 Consensus size: 33
82117035 AAATAGCATA
* *
82117045 ATATATGTATGAATTGGCATATTTTGGCTGCTT
1 ATATATGCATGAAATGGCATATTTTGGCTGCTT
* *
82117078 ATATATGCATTGAAATGGTATATTTTGGTTGCT
1 ATATATGCA-TGAAATGGCATATTTTGGCTGCT
82117111 CTATGTGCAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 8 0.29
34 20 0.71
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.45
Consensus pattern (33 bp):
ATATATGCATGAAATGGCATATTTTGGCTGCTT
Found at i:82122180 original size:40 final size:40
Alignment explanation
Indices: 82122102--82122207 Score: 117
Period size: 40 Copynumber: 2.6 Consensus size: 40
82122092 TGATGACATA
**
82122102 TCGGCTAAATATGGCACTTAGTGTGCGATTCGGTATAGCT
1 TCGGCTAAATATGGCACTTAGTGTGAAATTCGGTATAGCT
* *
82122142 TCGGCTAAACT-TGGCACTTAGTGTTAAATTTGAG-ATAGCT
1 TCGGCTAAA-TATGGCACTTAGTGTGAAATTCG-GTATAGCT
** *
82122182 TCGGCTATGTATAGCACTTAGTGTGA
1 TCGGCTAAATATGGCACTTAGTGTGA
82122208 GAGATATTGA
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
39 1 0.02
40 52 0.95
41 2 0.04
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (40 bp):
TCGGCTAAATATGGCACTTAGTGTGAAATTCGGTATAGCT
Found at i:82128205 original size:25 final size:26
Alignment explanation
Indices: 82128164--82128218 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 26
82128154 ATTTTTAGAA
*
82128164 AAATATATTTTTCAAGAATAACCAAT
1 AAATATATTTTTCAAGAATAACAAAT
82128190 AAATAT-TTTTTCAAGAATAACAAAT
1 AAATATATTTTTCAAGAATAACAAAT
82128215 AAAT
1 AAAT
82128219 CAAAAGGCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 22 0.79
26 6 0.21
ACGTcount: A:0.53, C:0.09, G:0.04, T:0.35
Consensus pattern (26 bp):
AAATATATTTTTCAAGAATAACAAAT
Found at i:82132165 original size:32 final size:32
Alignment explanation
Indices: 82132097--82132167 Score: 88
Period size: 32 Copynumber: 2.2 Consensus size: 32
82132087 ACACATGCCC
* * * * *
82132097 GTGTTGCCCGCATGGCCCCATTGGCACAGACC
1 GTGTGGCCCACATGGCCCAATTGGCACAAACA
*
82132129 GTGTGGCCCACATGGCCCAATTGGCCCAAACA
1 GTGTGGCCCACATGGCCCAATTGGCACAAACA
82132161 GTGTGGC
1 GTGTGGC
82132168 TTACACGGTC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.18, C:0.34, G:0.30, T:0.18
Consensus pattern (32 bp):
GTGTGGCCCACATGGCCCAATTGGCACAAACA
Found at i:82132197 original size:24 final size:24
Alignment explanation
Indices: 82132170--82132227 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
82132160 AGTGTGGCTT
*
82132170 ACACGGTCTAGCAAATGACCTGTC
1 ACACGGCCTAGCAAATGACCTGTC
82132194 ACACGGCCTAGCAAATGACCTGTC
1 ACACGGCCTAGCAAATGACCTGTC
82132218 ACACGGCCTA
1 ACACGGCCTA
82132228 CTACACTGTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.29, C:0.33, G:0.21, T:0.17
Consensus pattern (24 bp):
ACACGGCCTAGCAAATGACCTGTC
Found at i:82140154 original size:23 final size:23
Alignment explanation
Indices: 82140128--82140174 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
82140118 AATATAAAAA
**
82140128 TAAAAATAAATTAATTTAAATTT
1 TAAAAATAAATTAAACTAAATTT
* *
82140151 TAAAATTAAGTTAAACTAAATTT
1 TAAAAATAAATTAAACTAAATTT
82140174 T
1 T
82140175 TAAACCGGTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (23 bp):
TAAAAATAAATTAAACTAAATTT
Found at i:82140703 original size:21 final size:22
Alignment explanation
Indices: 82140663--82140704 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
82140653 AACGTTTCAC
82140663 AAGTATCAAATCGAAAAAAATT
1 AAGTATCAAATCGAAAAAAATT
**
82140685 AAGTATCAAATTTAAAAAAA
1 AAGTATCAAATCGAAAAAAA
82140705 AGTCAAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.62, C:0.07, G:0.07, T:0.24
Consensus pattern (22 bp):
AAGTATCAAATCGAAAAAAATT
Found at i:82146277 original size:20 final size:19
Alignment explanation
Indices: 82146252--82146300 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
82146242 GAATGAAGAA
**
82146252 AATTTACATTTTGTTTTATT
1 AATTTACATTTTG-TTTAAC
82146272 AATTTA-ACTTTTGTTTAAC
1 AATTTACA-TTTTGTTTAAC
82146291 AATTTACATT
1 AATTTACATT
82146301 ATTAACCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
19 13 0.52
20 12 0.48
ACGTcount: A:0.31, C:0.08, G:0.04, T:0.57
Consensus pattern (19 bp):
AATTTACATTTTGTTTAAC
Found at i:82148676 original size:131 final size:129
Alignment explanation
Indices: 82148448--82148811 Score: 343
Period size: 131 Copynumber: 2.8 Consensus size: 129
82148438 AGGGATCTTC
* * * * * * **
82148448 GATTGTTTTGAGCAGATGAAAAAGCGCAACCCAGCACGATAGGGC-TCGATTTTCAAACCGCCAA
1 GATTGTTTTGAGCAAACGAGAAATCGCAACCCAGCACGATAGGGCAT-GATTCTCGAATTGCCAA
* *
82148512 ACATCGGACATCGCCTTCGTTTTGAAAGGTTTTTAATAAACATGAATGAAAACCTAAAGGAATAT
65 ACATCGAACATCGCCTTCGTTTT-AAAGATTTTTAA-AAACATGAATGAAAACCTAAAGGAATAT
82148577 TA
128 TA
* *
82148579 GATTGTTTTGAGCAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTCTCGAATTGTCAAA
1 GATTGTTTTGAGCAAACGAGAAATCGCAACCCAGCACGATAGGGCATGATTCTCGAATTGCCAAA
** * * ** ** *** * *
82148644 CGCCGAATATTGCCTTCGTTTTAAATGATTTTTAGAAAGTATGCGTGAAATTTTGAAGGGATATT
66 CATCGAACATCGCCTTCGTTTTAAA-GATTTTTA-AAAACATGAATGAAAACCTAAAGGAATATT
*
82148709 T
129 A
* * * * * * *
82148710 GATTATTTTAAGCAAACGAGAAATTGTAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAA
1 GATTGTTTTGAGCAAACGAGAAATCGCAACCCAGCACGATAGGGCATGATT-CTCGAATTGCCAA
* *
82148775 ATATCGCACATCGCCTTCGTTTTAAAGAATTTTTAAA
65 ACATCGAACATCGCCTTCGTTTTAAAG-ATTTTTAAA
82148812 TGATTGATTA
Statistics
Matches: 187, Mismatches: 41, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
130 3 0.02
131 144 0.77
132 40 0.21
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (129 bp):
GATTGTTTTGAGCAAACGAGAAATCGCAACCCAGCACGATAGGGCATGATTCTCGAATTGCCAAA
CATCGAACATCGCCTTCGTTTTAAAGATTTTTAAAAACATGAATGAAAACCTAAAGGAATATTA
Found at i:82150793 original size:39 final size:39
Alignment explanation
Indices: 82150750--82150827 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
82150740 AAATCGAAAG
82150750 AAAAATGAGAATCAAATCACCTTGTGAAGACTTTTTTGT
1 AAAAATGAGAATCAAATCACCTTGTGAAGACTTTTTTGT
82150789 AAAAATGAGAATCAAATCACCTTGTGAAGACTTTTTTGT
1 AAAAATGAGAATCAAATCACCTTGTGAAGACTTTTTTGT
82150828 TCAAGCTTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33
Consensus pattern (39 bp):
AAAAATGAGAATCAAATCACCTTGTGAAGACTTTTTTGT
Found at i:82157958 original size:6 final size:7
Alignment explanation
Indices: 82157937--82157961 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
82157927 AAAAATATAA
82157937 TTAATTT
1 TTAATTT
82157944 TTAATTT
1 TTAATTT
82157951 TTAATTT
1 TTAATTT
82157958 TTAA
1 TTAA
82157962 AAATAGATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (7 bp):
TTAATTT
Found at i:82158264 original size:10 final size:10
Alignment explanation
Indices: 82158229--82158267 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
82158219 TAAAGTTTTA
*
82158229 ATATTTATTT
1 ATATTTAATT
*
82158239 ATAATTAATT
1 ATATTTAATT
82158249 ATTATTTAATT
1 A-TATTTAATT
82158260 ATATTTAA
1 ATATTTAA
82158268 ATAAAATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
ATATTTAATT
Found at i:82158461 original size:3 final size:3
Alignment explanation
Indices: 82158453--82158477 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
82158443 GGATACTCCC
82158453 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
82158478 AAGCACTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:82160842 original size:26 final size:24
Alignment explanation
Indices: 82160812--82160859 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
82160802 AATAAAAAAA
*
82160812 TTAAAAATATAATAAATCAAATATAT
1 TTAAAAACATAA-AAA-CAAATATAT
82160838 TTAAAAACATAAAAACAAATAT
1 TTAAAAACATAAAAACAAATAT
82160860 TAAAACAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.33
25 3 0.14
26 11 0.52
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (24 bp):
TTAAAAACATAAAAACAAATATAT
Found at i:82160879 original size:21 final size:21
Alignment explanation
Indices: 82160830--82160888 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
82160820 ATAATAAATC
*
82160830 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
82160850 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
82160872 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
82160889 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:82162743 original size:19 final size:19
Alignment explanation
Indices: 82162696--82162744 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
82162686 TTATTTCCAT
*
82162696 TTTCTTTTCATTTTTTCTTA
1 TTTCCTTTC-TTTTTTCTTA
82162716 TTTCC-TTCTTTTTTCTGTA
1 TTTCCTTTCTTTTTTCT-TA
82162735 -TTCCTTTCTT
1 TTTCCTTTCTT
82162745 CTTCCTCTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 12 0.46
19 10 0.38
20 4 0.15
ACGTcount: A:0.06, C:0.20, G:0.02, T:0.71
Consensus pattern (19 bp):
TTTCCTTTCTTTTTTCTTA
Found at i:82164807 original size:18 final size:18
Alignment explanation
Indices: 82164784--82164827 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 18
82164774 ATTTTGTAAA
82164784 TGTTTCATGCTTAATTTT
1 TGTTTCATGCTTAATTTT
82164802 TG-TT--T-CTTAATTTT
1 TGTTTCATGCTTAATTTT
*
82164816 TATTTCATGCTT
1 TGTTTCATGCTT
82164828 TAAGTGGCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 8
0.70 0.03 0.27
Matches are distributed among these distances:
14 10 0.48
15 3 0.14
17 3 0.14
18 5 0.24
ACGTcount: A:0.16, C:0.11, G:0.09, T:0.64
Consensus pattern (18 bp):
TGTTTCATGCTTAATTTT
Found at i:82166654 original size:5 final size:5
Alignment explanation
Indices: 82166646--82166676 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
82166636 ATTAAAAAAT
82166646 ATATA ATATA ATATA ATATA ATATA ATATA A
1 ATATA ATATA ATATA ATATA ATATA ATATA A
82166677 AGAGGTAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:82167218 original size:51 final size:51
Alignment explanation
Indices: 82167154--82167289 Score: 146
Period size: 51 Copynumber: 2.7 Consensus size: 51
82167144 TGGAAACATG
*
82167154 ATCTTAAAAGATATGATATTATAATATTAGAGATCTTAGATATGATATGGA
1 ATCTTAAAAGATATGATATTATAATATTAGAGATCTTAGATAAGATATGGA
* * * * * * ** *
82167205 ATCTTATAAGATATTATTTTATAAGATTACATATCTTATCTAAGATATGTA
1 ATCTTAAAAGATATGATATTATAATATTAGAGATCTTAGATAAGATATGGA
* * * *
82167256 ATATTAGAAGATATGATATTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATATTATAATATTAGAGAT
82167290 TTGATGGTAG
Statistics
Matches: 66, Mismatches: 19, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
51 66 1.00
ACGTcount: A:0.41, C:0.05, G:0.12, T:0.41
Consensus pattern (51 bp):
ATCTTAAAAGATATGATATTATAATATTAGAGATCTTAGATAAGATATGGA
Found at i:82169140 original size:96 final size:96
Alignment explanation
Indices: 82168974--82169263 Score: 447
Period size: 96 Copynumber: 3.0 Consensus size: 96
82168964 GTGTCCGAGG
* * * * * * *
82168974 AAGTCTGTTATCGATGGGAATGATCGAACAGATACGGAGCCCAAGAAGCTTGGTTCGAGCAAAGG
1 AAGTCTGTTATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
*
82169039 AAAAGCCGAAGCCAAGAGGGTAAAGAGGAGC
66 TAAAGCCGAAGCCAAGAGGGTAAAGAGGAGC
*
82169070 AAGTCTGTCATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTTATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
*
82169135 TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
66 TAAAGCCGAAGCCAAGAGGGTAAAGAGGAGC
* *
82169166 AAGTCTGTTATCGCAGGGAACGATGGAGCAGTCAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTTATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
*
82169231 TAAAGCCGAAACCAAGAGGGCT-AAGAGGAGC
66 TAAAGCCGAAGCCAAGAGGG-TAAAGAGGAGC
82169262 AA
1 AA
82169264 AAAGAAGCGA
Statistics
Matches: 178, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
96 178 1.00
ACGTcount: A:0.36, C:0.18, G:0.34, T:0.13
Consensus pattern (96 bp):
AAGTCTGTTATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
TAAAGCCGAAGCCAAGAGGGTAAAGAGGAGC
Found at i:82170234 original size:51 final size:51
Alignment explanation
Indices: 82170170--82170305 Score: 146
Period size: 51 Copynumber: 2.7 Consensus size: 51
82170160 TGGAAACATG
*
82170170 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* * * ** * * ** *
82170221 ATCTTATAAGATATTATTTTATAAGATTACATATCTTATCTAAGATATGTA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* * *
82170272 ATATTAGAAGATATGATATTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATATTATAATCTTAGAGAT
82170306 TTGATGGTAG
Statistics
Matches: 65, Mismatches: 20, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
51 65 1.00
ACGTcount: A:0.40, C:0.06, G:0.12, T:0.41
Consensus pattern (51 bp):
ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
Found at i:82171803 original size:40 final size:40
Alignment explanation
Indices: 82171745--82171821 Score: 93
Period size: 40 Copynumber: 1.9 Consensus size: 40
82171735 ACATACCATG
*
82171745 TGGGGATAGAATCGACCCA-CCTAACCCTACACACCAAGTA
1 TGGGGATAGAATCAACCCATCC-AACCCTACACACCAAGTA
* * **
82171785 TGGGGATATAGTCAACCCATCCAGGCCTACACACCAA
1 TGGGGATAGAATCAACCCATCCAACCCTACACACCAA
82171822 AAGGTACCGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
40 29 0.94
41 2 0.06
ACGTcount: A:0.34, C:0.32, G:0.18, T:0.16
Consensus pattern (40 bp):
TGGGGATAGAATCAACCCATCCAACCCTACACACCAAGTA
Found at i:82172655 original size:29 final size:29
Alignment explanation
Indices: 82172623--82172681 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
82172613 AAACTAACAA
* *
82172623 CAGTCTACCTTTAACGAAAAACGGCAGTT
1 CAGTCTACCTTTAAAGAAAAACGACAGTT
*
82172652 CAGTCTACCTTTAAAGAACAACGACAGTT
1 CAGTCTACCTTTAAAGAAAAACGACAGTT
82172681 C
1 C
82172682 CTTACTGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.24
Consensus pattern (29 bp):
CAGTCTACCTTTAAAGAAAAACGACAGTT
Found at i:82174209 original size:19 final size:18
Alignment explanation
Indices: 82174178--82174213 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
82174168 TATATATATG
82174178 CATGTATTAAAAAATAAC
1 CATGTATTAAAAAATAAC
*
82174196 CATGATATTTAAAAATAA
1 CATG-TATTAAAAAATAA
82174214 TTATTAACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.56, C:0.08, G:0.06, T:0.31
Consensus pattern (18 bp):
CATGTATTAAAAAATAAC
Found at i:82174434 original size:18 final size:18
Alignment explanation
Indices: 82174390--82174434 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
82174380 AAAGTACTAC
82174390 TAAATATAACAATAATGA
1 TAAATATAACAATAATGA
**
82174408 T-AATAATAAGTATAATGA
1 TAAAT-ATAACAATAATGA
82174426 TAAATATAA
1 TAAATATAA
82174435 TGATATACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 3 0.13
18 17 0.74
19 3 0.13
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (18 bp):
TAAATATAACAATAATGA
Found at i:82174449 original size:19 final size:18
Alignment explanation
Indices: 82174427--82174479 Score: 54
Period size: 19 Copynumber: 2.9 Consensus size: 18
82174417 GTATAATGAT
82174427 AAATATAATGATATACAAA
1 AAATATAAT-ATATACAAA
* *
82174446 AAATAATACTATATACACA
1 AAAT-ATAATATATACAAA
*
82174465 ATATAT-ATATATACA
1 AAATATAATATATACA
82174480 CGTATAGTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 8 0.28
18 2 0.07
19 15 0.52
20 4 0.14
ACGTcount: A:0.58, C:0.09, G:0.02, T:0.30
Consensus pattern (18 bp):
AAATATAATATATACAAA
Found at i:82174467 original size:17 final size:17
Alignment explanation
Indices: 82174428--82174480 Score: 54
Period size: 17 Copynumber: 3.0 Consensus size: 17
82174418 TATAATGATA
*
82174428 AATATA-ATGATATACAA
1 AATATATAT-ATATACAC
*
82174445 AAAATAATACTATATACAC
1 AATAT-ATA-TATATACAC
82174464 AATATATATATATACAC
1 AATATATATATATACAC
82174481 GTATAGTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
17 13 0.43
18 4 0.13
19 12 0.40
20 1 0.03
ACGTcount: A:0.57, C:0.11, G:0.02, T:0.30
Consensus pattern (17 bp):
AATATATATATATACAC
Found at i:82174550 original size:21 final size:21
Alignment explanation
Indices: 82174501--82174550 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
82174491 ATATATGTAC
* *
82174501 TAATATTAACAATAAATATAA
1 TAATAATAAAAATAAATATAA
**
82174522 TAGGAATAAAAATAAATATAA
1 TAATAATAAAAATAAATATAA
82174543 TAATAATA
1 TAATAATA
82174551 TATACACAAT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (21 bp):
TAATAATAAAAATAAATATAA
Found at i:82174664 original size:23 final size:22
Alignment explanation
Indices: 82174616--82174679 Score: 56
Period size: 23 Copynumber: 2.7 Consensus size: 22
82174606 TGTTCATAAG
**
82174616 ATAATATAAAATATATACATGGA
1 ATAATATAAAA-ATATACAACGA
*
82174639 ATAATATAAGAAATATACAACTA
1 ATAATATAA-AAATATACAACGA
*
82174662 ATAACATTAAAAAATATA
1 ATAATA-T-AAAAATATA
82174680 TACATAATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
23 22 0.65
24 10 0.29
25 2 0.06
ACGTcount: A:0.61, C:0.06, G:0.05, T:0.28
Consensus pattern (22 bp):
ATAATATAAAAATATACAACGA
Found at i:82174795 original size:12 final size:12
Alignment explanation
Indices: 82174780--82174814 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
82174770 ATACTAATGC
82174780 TAAT-AATATTAA
1 TAATAAATA-TAA
82174792 TAATAAATATAA
1 TAATAAATATAA
82174804 TAATAAATATA
1 TAATAAATATA
82174815 TATGCATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 18 0.82
13 4 0.18
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (12 bp):
TAATAAATATAA
Found at i:82175549 original size:12 final size:12
Alignment explanation
Indices: 82175532--82175561 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
82175522 TTTCTTGTTT
82175532 TTTTTAATTATA
1 TTTTTAATTATA
82175544 TTTTTAATTATA
1 TTTTTAATTATA
82175556 TTTTTA
1 TTTTTA
82175562 TATGTTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (12 bp):
TTTTTAATTATA
Found at i:82175564 original size:20 final size:22
Alignment explanation
Indices: 82175539--82175578 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
82175529 TTTTTTTTAA
82175539 TTATAT-TTTTAAT-TATATTT
1 TTATATGTTTTAATATATATTT
82175559 TTATATGTTTTAATATATAT
1 TTATATGTTTTAATATATAT
82175579 ATAGGTGAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.33
21 7 0.39
22 5 0.28
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (22 bp):
TTATATGTTTTAATATATATTT
Found at i:82179515 original size:16 final size:16
Alignment explanation
Indices: 82179494--82179564 Score: 88
Period size: 16 Copynumber: 4.4 Consensus size: 16
82179484 TGAATTACTT
*
82179494 ATTACAGTTCTATTCC
1 ATTACAGCTCTATTCC
*
82179510 ATTACAACTCTATTCC
1 ATTACAGCTCTATTCC
*
82179526 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCC
* * *
82179542 ATTACAACCCTATTCT
1 ATTACAGCTCTATTCC
82179558 ATTACAG
1 ATTACAG
82179565 TGAACCAAAT
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.31, C:0.27, G:0.04, T:0.38
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:82179538 original size:32 final size:32
Alignment explanation
Indices: 82179494--82179564 Score: 106
Period size: 32 Copynumber: 2.2 Consensus size: 32
82179484 TGAATTACTT
* * *
82179494 ATTACAGTTCTATTCCATTACAACTCTATTCC
1 ATTACAGCTCTATTCAATTACAACCCTATTCC
*
82179526 ATTACAGCTCTATTCAATTACAACCCTATTCT
1 ATTACAGCTCTATTCAATTACAACCCTATTCC
82179558 ATTACAG
1 ATTACAG
82179565 TGAACCAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.31, C:0.27, G:0.04, T:0.38
Consensus pattern (32 bp):
ATTACAGCTCTATTCAATTACAACCCTATTCC
Found at i:82180870 original size:16 final size:16
Alignment explanation
Indices: 82180850--82180904 Score: 85
Period size: 16 Copynumber: 3.4 Consensus size: 16
82180840 ATTTGGTTCA
82180850 CTGTAATGGAATAG-G
1 CTGTAATGGAATAGAG
*
82180865 ACTGTAATTGAATAGAG
1 -CTGTAATGGAATAGAG
82180882 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
82180898 CTGTAAT
1 CTGTAAT
82180905 AAGTAATTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
16 35 0.97
17 1 0.03
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.29
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:82180938 original size:46 final size:44
Alignment explanation
Indices: 82180886--82180979 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
82180876 ATAGAGCTGT
* *
82180886 AATGGAATAGAGCTGTAATAAGTAATTCAACTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAA-T-ATTCAACTGCTTGGTTGAATGG
***
82180932 AATGGAATAGAACTGTAATAATATTCTTGTGCTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAATATTCAACTGCTTGGTTGAATGG
82180976 AATG
1 AATG
82180980 ATGTTGTAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 22 0.51
45 1 0.02
46 20 0.47
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.34
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAATATTCAACTGCTTGGTTGAATGG
Found at i:82184264 original size:153 final size:153
Alignment explanation
Indices: 82183984--82184288 Score: 565
Period size: 153 Copynumber: 2.0 Consensus size: 153
82183974 ATTAGTTACA
82183984 TCACTTCCAACCACGTGCCAGCACTTTTGATAAAATAAACCAGAAATTCATCTTCACCGGGGCTT
1 TCACTTCCAACCACGTGCCAGCACTTTTGATAAAATAAACCAGAAATTCATCTTCACCGGGGCTT
* *
82184049 TTGTAGAACCAAATGCAAAAATAGCCTCGCGAATCTCTTTCGGGTTATACGGCGCTGTAAGCCTT
66 TTGTAGAACCAAATGCAAAAATAGCCTCGCGAATCTCTATCGGGTTATACGGCGCTGCAAGCCTT
82184114 TGATTATCATCCACTGAAATGCG
131 TGATTATCATCCACTGAAATGCG
82184137 TCACTTCCAACCACGTGCCAGCACTTTTGATAAAATAAACCAGAAATTCATCTTCACCGGGGCTT
1 TCACTTCCAACCACGTGCCAGCACTTTTGATAAAATAAACCAGAAATTCATCTTCACCGGGGCTT
*
82184202 TTGTAGAACCCAATGCAAAAATAGCCTCGCGAATCTCTATCGGGTTATACGGCGCTGCAAGCCTT
66 TTGTAGAACCAAATGCAAAAATAGCCTCGCGAATCTCTATCGGGTTATACGGCGCTGCAAGCCTT
* *
82184267 TGATTATCCTCCTCTGAAATGC
131 TGATTATCATCCACTGAAATGC
82184289 ATCTATCAAT
Statistics
Matches: 147, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
153 147 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (153 bp):
TCACTTCCAACCACGTGCCAGCACTTTTGATAAAATAAACCAGAAATTCATCTTCACCGGGGCTT
TTGTAGAACCAAATGCAAAAATAGCCTCGCGAATCTCTATCGGGTTATACGGCGCTGCAAGCCTT
TGATTATCATCCACTGAAATGCG
Found at i:82186084 original size:13 final size:13
Alignment explanation
Indices: 82186066--82186091 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
82186056 AGACAAACGC
82186066 TCATACTTAAATT
1 TCATACTTAAATT
82186079 TCATACTTAAATT
1 TCATACTTAAATT
82186092 ACCCAACTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.46
Consensus pattern (13 bp):
TCATACTTAAATT
Found at i:82192103 original size:41 final size:41
Alignment explanation
Indices: 82192048--82192286 Score: 299
Period size: 41 Copynumber: 5.8 Consensus size: 41
82192038 GAATGTAATA
* *
82192048 CAGACGTTACGTCTAGCAGGCTTAATGCCGGTGAAGTA-A-TT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG-A-TACATTT
82192089 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
82192130 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
* *
82192171 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
* * *
82192212 CAGACTATATGTCTAGCAGGC-TAAGTGCCGGTG-TAC-TGAAT
1 CAGACTTTAAGTCTAGCAGGCTTAA-TGCCGGTGATACAT--TT
* * **
82192253 CAGGCTTTAAGCCTAGCAGGCAAAATGCCGGTGA
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
82192287 ATCTGTTTAA
Statistics
Matches: 181, Mismatches: 10, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
39 3 0.02
40 8 0.04
41 168 0.93
42 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (41 bp):
CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
Found at i:82199254 original size:41 final size:41
Alignment explanation
Indices: 82199199--82199478 Score: 381
Period size: 41 Copynumber: 6.8 Consensus size: 41
82199189 GAATGTAATA
* *
82199199 CAGACGTTACGTCTAGCAGGCTTAATGCCGGTGAAGTA-A-TT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG-A-TACATTT
82199240 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
82199281 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
82199322 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
* *
82199363 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
* * *
82199404 CAGACTATATGTCTAGCAGGC-TAAGTGCCGGTG-TAC-TGAAT
1 CAGACTTTAAGTCTAGCAGGCTTAA-TGCCGGTGATACAT--TT
* * **
82199445 CAGGCTTTAAGCCTAGCAGGCAAAATGCCGGTGA
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
82199479 ATCTGTTTAA
Statistics
Matches: 222, Mismatches: 10, Indels: 13
0.91 0.04 0.05
Matches are distributed among these distances:
39 3 0.01
40 8 0.04
41 209 0.94
42 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (41 bp):
CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
Found at i:82202568 original size:40 final size:40
Alignment explanation
Indices: 82202524--82202628 Score: 176
Period size: 40 Copynumber: 2.6 Consensus size: 40
82202514 AATTAGGTGA
*
82202524 AAAAGAGGGAGAATGGTGGAACGAAATGGGAATCAGACTG
1 AAAAGAGGGAGAAGGGTGGAACGAAATGGGAATCAGACTG
*
82202564 AAAAGAGGGAGAAGGGTGGAATGAAATGGGAATCAGACTG
1 AAAAGAGGGAGAAGGGTGGAACGAAATGGGAATCAGACTG
*
82202604 AAAAGA-GGAGAAGGGTAGAACGAAA
1 AAAAGAGGGAGAAGGGTGGAACGAAA
82202629 GAAGGAGAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
39 17 0.28
40 44 0.72
ACGTcount: A:0.46, C:0.06, G:0.38, T:0.10
Consensus pattern (40 bp):
AAAAGAGGGAGAAGGGTGGAACGAAATGGGAATCAGACTG
Found at i:82226810 original size:20 final size:20
Alignment explanation
Indices: 82226785--82226829 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
82226775 ACATTAGTAT
82226785 TTTTATCCTGAATTTCAGGA
1 TTTTATCCTGAATTTCAGGA
* * *
82226805 TTTTATTCTGAATTTTAGTA
1 TTTTATCCTGAATTTCAGGA
82226825 TTTTA
1 TTTTA
82226830 ATTTGGATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.09, G:0.11, T:0.56
Consensus pattern (20 bp):
TTTTATCCTGAATTTCAGGA
Done.