Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 253 of 290
Found at i:82227465 original size:3 final size:3
Alignment explanation
Indices: 82227457--82227494 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
82227447 CTTCATTCTT
82227457 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
82227495 TTGGTTTCAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:82228290 original size:33 final size:33
Alignment explanation
Indices: 82228253--82228321 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
82228243 CTTTAGCCGC
82228253 CGCATACCCCTCAGCCTTGGCCACCACGCCCCA
1 CGCATACCCCTCAGCCTTGGCCACCACGCCCCA
* * *
82228286 CGCATGCCCCTCAGCCTTGGTCACCACGCTCCA
1 CGCATACCCCTCAGCCTTGGCCACCACGCCCCA
82228319 CGC
1 CGC
82228322 GTCTGACACT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.16, C:0.52, G:0.17, T:0.14
Consensus pattern (33 bp):
CGCATACCCCTCAGCCTTGGCCACCACGCCCCA
Found at i:82229399 original size:12 final size:12
Alignment explanation
Indices: 82229382--82229407 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
82229372 TTTTTTGTTG
82229382 TTTATATTTTTA
1 TTTATATTTTTA
82229394 TTTATATTTTTA
1 TTTATATTTTTA
82229406 TT
1 TT
82229408 AGTATCATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTATATTTTTA
Found at i:82229422 original size:3 final size:3
Alignment explanation
Indices: 82229398--82229532 Score: 78
Period size: 3 Copynumber: 45.0 Consensus size: 3
82229388 TTTTTATTTA
* * * *
82229398 TAT TTT TAT TAG TAT CAT TAT TAT TAT TAT TAT TAT TAT CTCCAT TAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -T--AT TAT
* * * * *
82229446 TAT TAT TAT TAT TAT TAT T-C TCT TGT TA- TAT TAC TAT TAT TGT TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
82229491 TAT TAT CAC TAT TTT TCT TAC TAT TAT TAT TAC TAT GAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
82229533 ATTTTCTTTT
Statistics
Matches: 97, Mismatches: 29, Indels: 12
0.70 0.21 0.09
Matches are distributed among these distances:
2 5 0.05
3 88 0.91
4 1 0.01
5 1 0.01
6 2 0.02
ACGTcount: A:0.28, C:0.10, G:0.03, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:82229503 original size:20 final size:21
Alignment explanation
Indices: 82229478--82229517 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
82229468 TTGTTATATT
*
82229478 ACTATTATTGTTA-TATTATC
1 ACTATTATTCTTACTATTATC
*
82229498 ACTATTTTTCTTACTATTAT
1 ACTATTATTCTTACTATTAT
82229518 TATTACTATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.28, C:0.12, G:0.03, T:0.57
Consensus pattern (21 bp):
ACTATTATTCTTACTATTATC
Found at i:82229696 original size:21 final size:20
Alignment explanation
Indices: 82229649--82229716 Score: 68
Period size: 21 Copynumber: 3.4 Consensus size: 20
82229639 CTTTTCTCTG
*
82229649 TTTTATTACTATTATTAATAT
1 TTTTATTACTATTA-TATTAT
**
82229670 CATTATTACTATTACTATTAT
1 TTTTATTACTATTA-TATTAT
*
82229691 TTTTATTTCTATT-T-TTAT
1 TTTTATTACTATTATATTAT
82229709 TTTTATTA
1 TTTTATTA
82229717 ACATATTTTT
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
18 11 0.28
19 1 0.03
21 27 0.69
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTTATTACTATTATATTAT
Found at i:82233354 original size:30 final size:24
Alignment explanation
Indices: 82233298--82233345 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
82233288 AGGGACCGAC
82233298 ATTTTTAATTATAATATATCGTGT
1 ATTTTTAATTATAATATATCGTGT
82233322 ATTTTTAATTATAATATATCGTGT
1 ATTTTTAATTATAATATATCGTGT
82233346 GATTGTATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.04, G:0.08, T:0.54
Consensus pattern (24 bp):
ATTTTTAATTATAATATATCGTGT
Found at i:82235543 original size:19 final size:19
Alignment explanation
Indices: 82235519--82235555 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
82235509 CATTAAGGTG
* *
82235519 ATTTTTTATTTTTTTTTCT
1 ATTTTTAATTTTGTTTTCT
82235538 ATTTTTAATTTTGTTTTC
1 ATTTTTAATTTTGTTTTC
82235556 AGACCCTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.14, C:0.05, G:0.03, T:0.78
Consensus pattern (19 bp):
ATTTTTAATTTTGTTTTCT
Found at i:82236234 original size:3 final size:3
Alignment explanation
Indices: 82236228--82236315 Score: 58
Period size: 3 Copynumber: 29.7 Consensus size: 3
82236218 TTTTTTTACA
* *
82236228 TAT TAT TAA TAT TAT TAC TAT TAT T-T TAT T-T CTAT TAT TAT CT-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT -TAT
* * * * *
82236272 TAT TAT TAC TGT TAG TAT TAT T-T TCAT TAC TAT TAT TTT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TA
82236316 ACATATTAAT
Statistics
Matches: 64, Mismatches: 14, Indels: 14
0.70 0.15 0.15
Matches are distributed among these distances:
2 6 0.09
3 54 0.84
4 4 0.06
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:82236257 original size:23 final size:23
Alignment explanation
Indices: 82236230--82236275 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
82236220 TTTTTACATA
82236230 TTATTAATATTATTA-CTATTATT
1 TTATTAATATTATTATCT-TTATT
**
82236253 TTATTTCTATTATTATCTTTATT
1 TTATTAATATTATTATCTTTATT
82236276 ATTACTGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 18 0.90
24 2 0.10
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (23 bp):
TTATTAATATTATTATCTTTATT
Found at i:82236433 original size:12 final size:12
Alignment explanation
Indices: 82236395--82236433 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
82236385 AATATTAGTG
82236395 TATGTATATTATA
1 TATGTATA-TATA
*
82236408 TATGTATGTATA
1 TATGTATATATA
*
82236420 TATGTTTATATA
1 TATGTATATATA
82236432 TA
1 TA
82236434 GTACTATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
12 16 0.70
13 7 0.30
ACGTcount: A:0.36, C:0.00, G:0.10, T:0.54
Consensus pattern (12 bp):
TATGTATATATA
Found at i:82236532 original size:31 final size:34
Alignment explanation
Indices: 82236495--82236556 Score: 103
Period size: 32 Copynumber: 1.9 Consensus size: 34
82236485 TTTATATATT
82236495 TCATTA-TTATTTCTAATAT-TAT-TATTATTAG
1 TCATTATTTATTTCTAATATGTATATATTATTAG
82236526 TCATTATTTATTTCTAATATGTATATATTAT
1 TCATTATTTATTTCTAATATGTATATATTAT
82236557 GTAAATGTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
31 6 0.21
32 13 0.46
33 3 0.11
34 6 0.21
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.58
Consensus pattern (34 bp):
TCATTATTTATTTCTAATATGTATATATTATTAG
Found at i:82236632 original size:8 final size:9
Alignment explanation
Indices: 82236619--82236701 Score: 53
Period size: 10 Copynumber: 8.7 Consensus size: 9
82236609 GTTTTCAATA
82236619 TTATAT-TT
1 TTATATATT
82236627 TTATATATT
1 TTATATATT
82236636 ATTATATATT
1 -TTATATATT
82236646 TTAATATTATT
1 TT-ATA-TATT
82236657 AGTTATATATT
1 --TTATATATT
*
82236668 TTTTACTATT
1 TTATA-TATT
* *
82236678 ATATGTATAT
1 TTATATAT-T
*
82236688 TTATA-ATA
1 TTATATATT
82236696 TTATAT
1 TTATAT
82236702 TGTATATTTC
Statistics
Matches: 59, Mismatches: 7, Indels: 17
0.71 0.08 0.20
Matches are distributed among these distances:
8 11 0.19
9 13 0.22
10 22 0.37
11 8 0.14
12 3 0.05
13 2 0.03
ACGTcount: A:0.35, C:0.01, G:0.02, T:0.61
Consensus pattern (9 bp):
TTATATATT
Found at i:82236638 original size:18 final size:19
Alignment explanation
Indices: 82236617--82236699 Score: 69
Period size: 21 Copynumber: 4.2 Consensus size: 19
82236607 ATGTTTTCAA
82236617 TATTATATTTTTATA-TAT
1 TATTATATTTTTATACTAT
*
82236635 TATTATATATTTTAATATTAT
1 TATTATAT-TTTT-ATACTAT
*
82236656 TAGTTATATATTTTTTACTAT
1 TA-TTATAT-TTTTATACTAT
* * *
82236677 TATATGTATATTTATAATAT
1 TAT-TATATTTTTATACTAT
82236697 TAT
1 TAT
82236700 ATTGTATATT
Statistics
Matches: 54, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
18 8 0.15
19 4 0.07
20 15 0.28
21 16 0.30
22 11 0.20
ACGTcount: A:0.35, C:0.01, G:0.02, T:0.61
Consensus pattern (19 bp):
TATTATATTTTTATACTAT
Found at i:82236653 original size:15 final size:15
Alignment explanation
Indices: 82236590--82236655 Score: 53
Period size: 15 Copynumber: 4.1 Consensus size: 15
82236580 TATATTCTTC
*
82236590 ATATATGTT-ATATAT
1 ATATATTTTAATAT-T
*
82236605 ATATGTTTTCAATATT
1 ATATATTTT-AATATT
*
82236621 ATATTTTTATATATTATT
1 ATATATTT-TA-A-TATT
82236639 ATATATTTTAATATT
1 ATATATTTTAATATT
82236654 AT
1 AT
82236656 TAGTTATATA
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
15 13 0.31
16 10 0.24
17 8 0.19
18 11 0.26
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (15 bp):
ATATATTTTAATATT
Found at i:82236667 original size:42 final size:42
Alignment explanation
Indices: 82236620--82236741 Score: 133
Period size: 44 Copynumber: 2.8 Consensus size: 42
82236610 TTTTCAATAT
82236620 TATATTTTTATA-TATTATTATATATTT-TAATATTATTAGTTA
1 TATATTTTTATACTATTATTATATATTTATAATATTA-TA-TTA
* *
82236662 TATATTTTT-TACTATTATATGTATATTTATAATATTATATTG
1 TATATTTTTATACTATTAT-TATATATTTATAATATTATATTA
* *
82236704 TATATTTCTAATACTATTATTTATATATGTATATATAT
1 TATATTT-TTATACTATTA-TTATATATTTATA-ATAT
82236742 GTGTGTGTAT
Statistics
Matches: 68, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
41 2 0.03
42 24 0.35
43 11 0.16
44 26 0.38
45 5 0.07
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.59
Consensus pattern (42 bp):
TATATTTTTATACTATTATTATATATTTATAATATTATATTA
Found at i:82236686 original size:21 final size:20
Alignment explanation
Indices: 82236547--82236741 Score: 95
Period size: 24 Copynumber: 9.3 Consensus size: 20
82236537 TTCTAATATG
*
82236547 TATATATTATGTA-A-ATGTT
1 TATATATTATATATATAT-TT
*
82236566 TAAATATTATATTATATATTCT
1 TATATATTATA-TATATATT-T
82236588 TCATATATGTTATATATATATGTT
1 T-ATATA--TTATATATATAT-TT
82236612 T-TCA-A-TAT-TATAT-TTT
1 TAT-ATATTATATATATATTT
82236628 TATATATTAT-TATATATTT
1 TATATATTATATATATATTT
82236647 TA-ATATTATTAGTTATATATTT
1 TATATATTA-TA--TATATATTT
* *
82236669 TTTACTATTATATGTATA-TT
1 TATA-TATTATATATATATTT
*
82236689 TATAATATTATATTGTATATTT
1 TAT-ATATTATA-TATATATTT
* *
82236711 CTAATACTATTATTTATATATGTA
1 -T-ATA-TATTATATATATAT-TT
82236735 TATATAT
1 TATATAT
82236742 GTGTGTGTAT
Statistics
Matches: 141, Mismatches: 9, Indels: 50
0.70 0.05 0.25
Matches are distributed among these distances:
16 4 0.03
17 3 0.02
18 19 0.13
19 18 0.13
20 13 0.09
21 17 0.12
22 21 0.15
23 17 0.12
24 23 0.16
25 6 0.04
ACGTcount: A:0.36, C:0.03, G:0.04, T:0.57
Consensus pattern (20 bp):
TATATATTATATATATATTT
Found at i:82236752 original size:16 final size:17
Alignment explanation
Indices: 82236731--82236767 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
82236721 TATTTATATA
82236731 TGTATATATATGTGT-G
1 TGTATATATATGTGTAG
*
82236747 TGTATATATTTGTGTAG
1 TGTATATATATGTGTAG
82236764 TGTA
1 TGTA
82236768 CAAAGTAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51
Consensus pattern (17 bp):
TGTATATATATGTGTAG
Found at i:82236948 original size:29 final size:29
Alignment explanation
Indices: 82236913--82236973 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
82236903 CCATCTTATG
*
82236913 TATATATT-TTAAATATTATATTGTGTATA
1 TATATATTCTT-AATACTATATTGTGTATA
82236942 TATATATTCTTAATACTATATTGTGTATA
1 TATATATTCTTAATACTATATTGTGTATA
82236971 TAT
1 TAT
82236974 CATTATTACA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 28 0.93
30 2 0.07
ACGTcount: A:0.36, C:0.03, G:0.07, T:0.54
Consensus pattern (29 bp):
TATATATTCTTAATACTATATTGTGTATA
Found at i:82238442 original size:26 final size:26
Alignment explanation
Indices: 82238413--82238520 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
82238403 TGATACAAAT
82238413 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
82238439 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82238465 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
82238491 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82238517 TGAT
1 TGAT
82238521 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:82240810 original size:18 final size:19
Alignment explanation
Indices: 82240778--82240823 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
82240768 TAGGGCGCGT
82240778 TTTCAAAAACAAAAATTGA
1 TTTCAAAAACAAAAATTGA
82240797 TTTCAAAAACAAAAATTGA
1 TTTCAAAAACAAAAATTGA
82240816 TTTCAAAA
1 TTTCAAAA
82240824 TAACATGACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.57, C:0.11, G:0.04, T:0.28
Consensus pattern (19 bp):
TTTCAAAAACAAAAATTGA
Found at i:82244798 original size:22 final size:23
Alignment explanation
Indices: 82244772--82244818 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
82244762 TAAAAGAAAT
82244772 AGAATAAAGAAAAGA-AACAAAA
1 AGAATAAAGAAAAGAGAACAAAA
* *
82244794 AGAATAGAGAAAAGAGAACAGAA
1 AGAATAAAGAAAAGAGAACAAAA
82244817 AG
1 AG
82244819 CATTCGAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.70, C:0.04, G:0.21, T:0.04
Consensus pattern (23 bp):
AGAATAAAGAAAAGAGAACAAAA
Found at i:82244807 original size:27 final size:30
Alignment explanation
Indices: 82244763--82244817 Score: 73
Period size: 27 Copynumber: 1.9 Consensus size: 30
82244753 TAAAGTAAAT
82244763 AAAAGAAATAGAATAAAGA-AA-AGAAACA
1 AAAAGAAATAGAATAAAGAGAACAGAAACA
82244791 AAAAG-AATAGAGA-AAAGAGAACAGAAA
1 AAAAGAAATAGA-ATAAAGAGAACAGAAA
82244818 GCATTCGAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
27 11 0.46
28 8 0.33
29 5 0.21
ACGTcount: A:0.73, C:0.04, G:0.18, T:0.05
Consensus pattern (30 bp):
AAAAGAAATAGAATAAAGAGAACAGAAACA
Found at i:82246287 original size:21 final size:21
Alignment explanation
Indices: 82246251--82246324 Score: 85
Period size: 21 Copynumber: 3.5 Consensus size: 21
82246241 AGGCACTTTA
*
82246251 TGTGCCGTATTCAGGCACCTCG
1 TGTGTCGTA-TCAGGCACCTCG
82246273 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
* * * **
82246294 TGTGTCGTTTTAGGCACTTTA
1 TGTGTCGTATCAGGCACCTCG
82246315 TGTGTCGTAT
1 TGTGTCGTAT
82246325 ACTGATCAGG
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
21 37 0.82
22 8 0.18
ACGTcount: A:0.14, C:0.23, G:0.27, T:0.36
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:82255559 original size:75 final size:74
Alignment explanation
Indices: 82255449--82255969 Score: 629
Period size: 75 Copynumber: 7.0 Consensus size: 74
82255439 CTACGGTTCA
* * * * *
82255449 AAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTTGACTGACATGTTGAGGTATTTTCAAT
1 AAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCC-TCA-AGACACGTTGAGGTATTTTCAAT
*
82255514 TTCTG-CCTTC
64 TTCTGTCTTTC
* * * * * *
82255524 TAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
82255589 CTGTCTTTC
66 CTGTCTTTC
* *** * * *
82255598 AAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGATACGCTGAGATAATTT
1 ------AAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGT-ATTT
*
82255663 T-TATTTCTG--TTTC
59 TCAATTTCTGTCTTTC
* * *
82255676 -AAAATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
82255740 CTGTCTTTC
66 CTGTCTTTC
* *
82255749 AAAAAATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
1 AAAAAA-TCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
82255814 TCTGTCTTTC
65 TCTGTCTTTC
* * *
82255824 AAAAAATTCAACTCATACTACAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
1 AAAAAA-TCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
*
82255889 TCTATCTTTC
65 TCTGTCTTTC
* *
82255899 AAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTGTTTTCAATTT
1 AAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
82255964 CTGTCT
66 CTGTCT
82255970 CAAGACACGC
Statistics
Matches: 399, Mismatches: 34, Indels: 27
0.87 0.07 0.06
Matches are distributed among these distances:
70 5 0.01
71 50 0.13
73 28 0.07
74 69 0.17
75 182 0.46
78 4 0.01
80 57 0.14
81 4 0.01
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32
Consensus pattern (74 bp):
AAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
CTGTCTTTC
Found at i:82255977 original size:33 final size:33
Alignment explanation
Indices: 82255935--82256002 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
82255925 TGAGTTGAGC
* **
82255935 CTCAAGACACGTTGAGGTGTTTTCAATTTCTGT
1 CTCAAGACACGCTGAGGTAATTTCAATTTCTGT
82255968 CTCAAGACACGCTGAGGTAATTTCAATTTCTGT
1 CTCAAGACACGCTGAGGTAATTTCAATTTCTGT
82256001 CT
1 CT
82256003 TTCAAGATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.37
Consensus pattern (33 bp):
CTCAAGACACGCTGAGGTAATTTCAATTTCTGT
Found at i:82256052 original size:108 final size:107
Alignment explanation
Indices: 82255861--82256060 Score: 337
Period size: 108 Copynumber: 1.9 Consensus size: 107
82255851 TGAGTTGAGC
* * *
82255861 CTCAAGACACGTTGAGGTATTTTCAATTTCTATCTTTCAAAAAATCAACTCATATTGCTAGAGGT
1 CTCAAGACACGCTGAGGTAATTTCAATTTCTATCTTTCAAAAAATCAACTCATATTGCGAGAGGT
82255926 GAGTTGAGCCTCAAGACACGTTGAGGTGTTTTCAATTTCTGT
66 GAGTTGAGCCTCAAGACACGTTGAGGTGTTTTCAATTTCTGT
* *
82255968 CTCAAGACACGCTGAGGTAATTTCAATTTCTGTCTTTCAAGATAATCAACTCATATTGCGAGAGG
1 CTCAAGACACGCTGAGGTAATTTCAATTTCTATCTTTCAA-AAAATCAACTCATATTGCGAGAGG
*
82256033 TGAGTTGAGCCTCAGGACACGTTGAGGT
65 TGAGTTGAGCCTCAAGACACGTTGAGGT
82256061 AATTTTGATC
Statistics
Matches: 86, Mismatches: 6, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
107 37 0.43
108 49 0.57
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (107 bp):
CTCAAGACACGCTGAGGTAATTTCAATTTCTATCTTTCAAAAAATCAACTCATATTGCGAGAGGT
GAGTTGAGCCTCAAGACACGTTGAGGTGTTTTCAATTTCTGT
Found at i:82256105 original size:72 final size:75
Alignment explanation
Indices: 82255968--82256117 Score: 216
Period size: 72 Copynumber: 2.0 Consensus size: 75
82255958 CAATTTCTGT
* *
82255968 CTCAAGACACGCTGAGGTAATTTCAATTTCTGTCTTTCAAGATAATCAACTCATATTGCGAGAGG
1 CTCAAGACACGCTGAGGTAATTTCAATCTCTGTCTTTCAAGATAATCAACTCATATTGCAAGAGG
*
82256033 TGAGTTGAGC
66 TGAGTAGAGC
* * **
82256043 CTCAGGACACGTTGAGGTAATTTTGATCTCTGT-TTTCAA-A-AATCAACTCATATTGCAAGAGG
1 CTCAAGACACGCTGAGGTAATTTCAATCTCTGTCTTTCAAGATAATCAACTCATATTGCAAGAGG
82256105 TGAGTAGAGC
66 TGAGTAGAGC
82256115 CTC
1 CTC
82256118 GGATCACATG
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
72 33 0.49
73 1 0.01
74 6 0.09
75 28 0.41
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (75 bp):
CTCAAGACACGCTGAGGTAATTTCAATCTCTGTCTTTCAAGATAATCAACTCATATTGCAAGAGG
TGAGTAGAGC
Found at i:82256142 original size:182 final size:182
Alignment explanation
Indices: 82255786--82256148 Score: 493
Period size: 182 Copynumber: 2.0 Consensus size: 182
82255776 TGAGTTGAGC
* *
82255786 CTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAATTCAACTCATACTACAAGAAG
1 CTCAAGACACGCTGAGGTAATTTCAATTTCTGTCTTTCAAAAAATTCAACTCATACTACAAGAAG
*
82255851 TGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTATCTTTCAAAAAATCAACTCATAT
66 TGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATCTCTATCTTTCAAAAAATCAACTCATAT
* * * * *
82255916 TGCTAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTGTTTTCAATTTCTGT
131 TGCAAGAGGTGAGTAGAGCCTCAAGACACGTCGAGGTATTTTCAAATTCTGT
* * * * *
82255968 CTCAAGACACGCTGAGGTAATTTCAATTTCTGTCTTTCAAGATAA-TCAACTCATATTGCGAGAG
1 CTCAAGACACGCTGAGGTAATTTCAATTTCTGTCTTTCAA-AAAATTCAACTCATACTACAAGAA
* * *
82256032 GTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTT-GATCTCTGT-TTTC-AAAAATCAACTCAT
65 GTGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTTCAATCTCTATCTTTCAAAAAATCAACTCAT
*
82256094 ATTGCAAGAGGTGAGTAGAGCCTC-GGATCACATGTCGAGGTATTTTCAAATTCTG
129 ATTGCAAGAGGTGAGTAGAGCCTCAAGA-CAC--GTCGAGGTATTTTCAAATTCTG
82256149 CTTTTCAAAT
Statistics
Matches: 159, Mismatches: 17, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
179 2 0.01
180 39 0.25
181 4 0.03
182 106 0.67
183 8 0.05
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (182 bp):
CTCAAGACACGCTGAGGTAATTTCAATTTCTGTCTTTCAAAAAATTCAACTCATACTACAAGAAG
TGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATCTCTATCTTTCAAAAAATCAACTCATAT
TGCAAGAGGTGAGTAGAGCCTCAAGACACGTCGAGGTATTTTCAAATTCTGT
Found at i:82256225 original size:87 final size:87
Alignment explanation
Indices: 82256076--82256234 Score: 230
Period size: 87 Copynumber: 1.8 Consensus size: 87
82256066 TGATCTCTGT
* * *
82256076 TTTCAAAAATCAACTCATATTGCAAGAGGTGAGTAGAGCCTCGGATCACATGTCGAGGTATTTTC
1 TTTCAAAAACCAACTCATATTGCAAGAAGTGAGTAGAGCCTCGGATCACATGTCGAGCTATTTTC
82256141 AAATTCTGCTTTTCAAATTATG
66 AAATTCTGCTTTTCAAATTATG
* * * *
82256163 TTTCAAAAACCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACATG-CTGAGCTATTTT
1 TTTCAAAAACCAACTCATATTGCAAGAAGTGAGTAGAGCCTCGGATCACATGTC-GAGCTATTTT
*
82256227 CAATTTCT
65 CAAATTCT
82256235 ATTTTTAATG
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
86 1 0.02
87 62 0.98
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (87 bp):
TTTCAAAAACCAACTCATATTGCAAGAAGTGAGTAGAGCCTCGGATCACATGTCGAGCTATTTTC
AAATTCTGCTTTTCAAATTATG
Found at i:82256253 original size:13 final size:13
Alignment explanation
Indices: 82256220--82256255 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
82256210 ACATGCTGAG
* *
82256220 CTATTTTCAATTT
1 CTATTTTTAATGT
82256233 CTATTTTTAATGT
1 CTATTTTTAATGT
82256246 CTATTTTTAA
1 CTATTTTTAA
82256256 AGAGTCAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.25, C:0.11, G:0.03, T:0.61
Consensus pattern (13 bp):
CTATTTTTAATGT
Found at i:82257897 original size:3 final size:3
Alignment explanation
Indices: 82257891--82258054 Score: 63
Period size: 3 Copynumber: 54.7 Consensus size: 3
82257881 TTTTTTTACA
* *
82257891 TAT TAT TAA TAT TAT TAC TAT TAT T-T TAT T-T CTAT TAT TAT CT-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT -TAT
* * * * * *
82257935 TAT TAT TAC TGT TAG TAT TAT T-T TCAT TAC TAT TAT TTT TAT TAA
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
* * * * * *
82257980 CA- TAT TAAT TAT T-T TCT AACG TAT TAT AAT TACT AAT TAT TAT TAT
1 TAT TAT T-AT TAT TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TAT
* * *
82258026 T-T CCAG TAT TAT TAT TAT TAT TAA TAT TA
1 TAT -TAT TAT TAT TAT TAT TAT TAT TAT TA
82258055 GTGTATGTAT
Statistics
Matches: 115, Mismatches: 32, Indels: 28
0.66 0.18 0.16
Matches are distributed among these distances:
2 10 0.09
3 95 0.83
4 10 0.09
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:82257920 original size:23 final size:23
Alignment explanation
Indices: 82257893--82257938 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
82257883 TTTTTACATA
82257893 TTATTAATATTATTA-CTATTATT
1 TTATTAATATTATTATCT-TTATT
**
82257916 TTATTTCTATTATTATCTTTATT
1 TTATTAATATTATTATCTTTATT
82257939 ATTACTGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 18 0.90
24 2 0.10
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (23 bp):
TTATTAATATTATTATCTTTATT
Found at i:82258096 original size:12 final size:12
Alignment explanation
Indices: 82258058--82258096 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
82258048 AATATTAGTG
82258058 TATGTATATTATA
1 TATGTATA-TATA
*
82258071 TATGTATGTATA
1 TATGTATATATA
*
82258083 TATGTTTATATA
1 TATGTATATATA
82258095 TA
1 TA
82258097 GTACTATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
12 16 0.70
13 7 0.30
ACGTcount: A:0.36, C:0.00, G:0.10, T:0.54
Consensus pattern (12 bp):
TATGTATATATA
Found at i:82258283 original size:20 final size:20
Alignment explanation
Indices: 82258213--82258285 Score: 58
Period size: 20 Copynumber: 3.5 Consensus size: 20
82258203 TAATATGTAT
* * *
82258213 ATATTATGTAAATG-TTTAA
1 ATATTATATATATGTTTTCA
*
82258232 ATATTATATTATATATTCTTCA
1 ATATTATA-TATATGTT-TTCA
82258254 TATATGTTATATATATGTTTTCA
1 -ATA--TTATATATATGTTTTCA
82258277 ATATTATAT
1 ATATTATAT
82258286 TTTTTATATA
Statistics
Matches: 43, Mismatches: 5, Indels: 11
0.73 0.08 0.19
Matches are distributed among these distances:
19 7 0.16
20 10 0.23
21 1 0.02
22 6 0.14
23 7 0.16
24 7 0.16
25 5 0.12
ACGTcount: A:0.37, C:0.04, G:0.05, T:0.53
Consensus pattern (20 bp):
ATATTATATATATGTTTTCA
Found at i:82258284 original size:18 final size:16
Alignment explanation
Indices: 82258263--82258317 Score: 58
Period size: 18 Copynumber: 3.2 Consensus size: 16
82258253 ATATATGTTA
82258263 TATATATGTTTTCAATAT
1 TATATAT-TTTT-AATAT
82258281 TATAT-TTTTTATATAT
1 TATATATTTTTA-ATAT
82258297 TATTATATATTTTAATAT
1 TA-TATAT-TTTTAATAT
82258315 TAT
1 TAT
82258318 TAGTTATATA
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
15 1 0.03
16 10 0.30
17 5 0.15
18 12 0.36
19 5 0.15
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (16 bp):
TATATATTTTTAATAT
Found at i:82258290 original size:16 final size:15
Alignment explanation
Indices: 82258265--82258317 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 15
82258255 ATATGTTATA
*
82258265 TATATGTTTTCAATAT
1 TATAT-TTTTTAATAT
82258281 TATATTTTTTATATAT
1 TATATTTTTTA-ATAT
82258297 TATTATATATTTTAATAT
1 TA-TAT-T-TTTTAATAT
82258315 TAT
1 TAT
82258318 TAGTTATATA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
15 5 0.16
16 11 0.34
17 4 0.12
18 7 0.22
19 5 0.16
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (15 bp):
TATATTTTTTAATAT
Found at i:82258297 original size:61 final size:65
Alignment explanation
Indices: 82258227--82258395 Score: 176
Period size: 59 Copynumber: 2.7 Consensus size: 65
82258217 TATGTAAATG
* * *
82258227 TTTAAATATTATATTATATATTCTTCATA-TA-T-GTTATATATATGTTTTCAA-TATTATAT-T
1 TTTATATATTATATTATATATT-TTAATATTATTAGTTATATAT-T-TTTTAAACTATTATATGT
82258287 -T-
63 ATA
82258288 TTTATATA-T-TATTATATATTTTAATATTATTAGTTATATATTTTTTAAACTATTATATGTATA
1 TTTATATATTATATTATATATTTTAATATTATTAGTTATATATTTTTTAAACTATTATATGTATA
* * *
82258351 TTTATAATATTATATTGTATATTTCTAATACTATTATTTATATAT
1 TTTAT-ATATTATATTATATATTT-TAATATTATTAGTTATATAT
82258396 GTATATATAT
Statistics
Matches: 91, Mismatches: 6, Indels: 16
0.81 0.05 0.14
Matches are distributed among these distances:
58 5 0.05
59 19 0.21
60 11 0.12
61 17 0.19
62 1 0.01
63 5 0.05
64 3 0.03
65 1 0.01
66 11 0.12
67 18 0.20
ACGTcount: A:0.36, C:0.04, G:0.03, T:0.58
Consensus pattern (65 bp):
TTTATATATTATATTATATATTTTAATATTATTAGTTATATATTTTTTAAACTATTATATGTATA
Found at i:82258302 original size:19 final size:18
Alignment explanation
Indices: 82258278--82258319 Score: 66
Period size: 19 Copynumber: 2.3 Consensus size: 18
82258268 ATGTTTTCAA
*
82258278 TATTATATTTTTTATATAT
1 TATTATATATTTTA-ATAT
82258297 TATTATATATTTTAATAT
1 TATTATATATTTTAATAT
82258315 TATTA
1 TATTA
82258320 GTTATATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 9 0.41
19 13 0.59
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
TATTATATATTTTAATAT
Found at i:82258307 original size:21 final size:22
Alignment explanation
Indices: 82258278--82258395 Score: 104
Period size: 21 Copynumber: 5.5 Consensus size: 22
82258268 ATGTTTTCAA
82258278 TATTATAT-TTTTT-ATA-TAT
1 TATTATATATTTTTAATACTAT
*
82258297 TATTATATA-TTTTAATATTAT
1 TATTATATATTTTTAATACTAT
82258318 TAGTTATATATTTTTTAA-ACTAT
1 TA-TTATATA-TTTTTAATACTAT
* * *
82258341 TATATGTATATTTATAATATTA-
1 TAT-TATATATTTTTAATACTAT
* *
82258363 TATTGTATATTTCTAATACTAT
1 TATTATATATTTTTAATACTAT
82258385 TATTTATATAT
1 TA-TTATATAT
82258396 GTATATATAT
Statistics
Matches: 82, Mismatches: 7, Indels: 16
0.78 0.07 0.15
Matches are distributed among these distances:
19 12 0.15
20 3 0.04
21 21 0.26
22 19 0.23
23 21 0.26
24 6 0.07
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (22 bp):
TATTATATATTTTTAATACTAT
Found at i:82258314 original size:8 final size:9
Alignment explanation
Indices: 82258240--82258331 Score: 53
Period size: 11 Copynumber: 9.2 Consensus size: 9
82258230 AAATATTATA
82258240 TTATATATT
1 TTATATATT
82258249 CTTCATATATGT
1 -TT-ATATAT-T
82258261 TATATATATGT
1 T-TATATAT-T
*
82258272 TT-TCA-ATA
1 TTAT-ATATT
*
82258280 TTATATTTT
1 TTATATATT
82258289 TTATATATT
1 TTATATATT
82258298 ATTATATATT
1 -TTATATATT
82258308 TTAATATTATT
1 TT-ATA-TATT
82258319 AGTTATATATT
1 --TTATATATT
82258330 TT
1 TT
82258332 TTAAACTATT
Statistics
Matches: 67, Mismatches: 4, Indels: 23
0.71 0.04 0.24
Matches are distributed among these distances:
8 3 0.04
9 17 0.25
10 16 0.24
11 24 0.36
12 5 0.07
13 2 0.03
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (9 bp):
TTATATATT
Found at i:82258328 original size:34 final size:36
Alignment explanation
Indices: 82258253--82258328 Score: 86
Period size: 34 Copynumber: 2.2 Consensus size: 36
82258243 TATATTCTTC
* * *
82258253 ATATATGTTATATATATGTTTTCAATATTATATTTT
1 ATATATATTATATATATATTTTCAATATTATATGTT
*
82258289 TTATATATTAT-TATATATTTT-AATATTAT-TAGTT
1 ATATATATTATATATATATTTTCAATATTATAT-GTT
82258323 ATATAT
1 ATATAT
82258329 TTTTTAAACT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
33 1 0.03
34 15 0.44
35 9 0.26
36 9 0.26
ACGTcount: A:0.36, C:0.01, G:0.04, T:0.59
Consensus pattern (36 bp):
ATATATATTATATATATATTTTCAATATTATATGTT
Found at i:82258372 original size:44 final size:45
Alignment explanation
Indices: 82258281--82258405 Score: 134
Period size: 44 Copynumber: 2.8 Consensus size: 45
82258271 TTTTCAATAT
*
82258281 TATATTTTTTATA-TATTATTATATATTT-TAATATTATTAGTTA
1 TATATTTTTTAAACTATTATTATATATTTATAATATTATTAGTTA
* *
82258324 TATATTTTTTAAACTATTATATGTATATTTATAATATTA-TA-TTG
1 TATATTTTTTAAACTATTAT-TATATATTTATAATATTATTAGTTA
* *
82258368 TATA-TTTCTAATACTATTATTTATATATGTATATATAT
1 TATATTTTTTAA-ACTATTA-TTATATATTTATA-ATAT
82258406 GTGTGTATAT
Statistics
Matches: 70, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
43 18 0.26
44 29 0.41
45 15 0.21
46 8 0.11
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.58
Consensus pattern (45 bp):
TATATTTTTTAAACTATTATTATATATTTATAATATTATTAGTTA
Found at i:82258625 original size:29 final size:29
Alignment explanation
Indices: 82258576--82258636 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
82258566 CCATCTTATG
**
82258576 TATATATTTTAATTATTATATTGTGTATA
1 TATATATTTTAATTACCATATTGTGTATA
82258605 TATATATTCTTAA-TACCATATTGTGTATA
1 TATATATT-TTAATTACCATATTGTGTATA
82258634 TAT
1 TAT
82258637 CATTATTACA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 25 0.86
30 4 0.14
ACGTcount: A:0.34, C:0.05, G:0.07, T:0.54
Consensus pattern (29 bp):
TATATATTTTAATTACCATATTGTGTATA
Found at i:82262772 original size:17 final size:17
Alignment explanation
Indices: 82262750--82262785 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
82262740 TACTGTTGAA
82262750 GACTGAAGCAATATTTG
1 GACTGAAGCAATATTTG
82262767 GACTGAAGCAATATTTG
1 GACTGAAGCAATATTTG
82262784 GA
1 GA
82262786 ATTTTATGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.28
Consensus pattern (17 bp):
GACTGAAGCAATATTTG
Found at i:82265358 original size:12 final size:12
Alignment explanation
Indices: 82265341--82265365 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
82265331 TAATATGTTC
82265341 ATTATGTCTTTG
1 ATTATGTCTTTG
82265353 ATTATGTCTTTG
1 ATTATGTCTTTG
82265365 A
1 A
82265366 AGCTTGGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.08, G:0.16, T:0.56
Consensus pattern (12 bp):
ATTATGTCTTTG
Found at i:82267923 original size:20 final size:20
Alignment explanation
Indices: 82267898--82267943 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
82267888 ATTGGATTTT
82267898 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
82267918 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
82267937 GCCCATA
1 GCCCATA
82267944 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:82267952 original size:19 final size:20
Alignment explanation
Indices: 82267910--82267953 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
82267900 CCATATTAAC
** *
82267910 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
82267930 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
82267949 ACAGT
1 ACAGT
82267954 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:82271729 original size:60 final size:60
Alignment explanation
Indices: 82271662--82271787 Score: 157
Period size: 60 Copynumber: 2.1 Consensus size: 60
82271652 GGGTCTTAGT
* *
82271662 CCATATCAATATTAATCTGGGCCATAGCCC-CTTACAATATC-AGAGTATATTGGGCCTAGC
1 CCATATCAATATCAATCTGGGCCATAGCCCTATTACAA-ATCAAGA-TATATTGGGCCTAGC
* * * * *
82271722 CCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAGTCAAGATATATTGGTCCTTGC
1 CCATATCAATATCAATCTGGGCCATAGCCCTATTACAAATCAAGATATATTGGGCCTAGC
82271782 CCATAT
1 CCATAT
82271788 TAACACAGTT
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
60 48 0.84
61 9 0.16
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (60 bp):
CCATATCAATATCAATCTGGGCCATAGCCCTATTACAAATCAAGATATATTGGGCCTAGC
Found at i:82271834 original size:19 final size:20
Alignment explanation
Indices: 82271780--82271835 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 20
82271770 ATTGGTCCTT
*
82271780 GCCCATATTAACACAGTTGG
1 GCCCATATTAAAACAGTTGG
*
82271800 GCCCAT-TTCAATACAGTT-G
1 GCCCATATT-AAAACAGTTGG
*
82271819 GCCCATAATAAAACAGT
1 GCCCATATTAAAACAGT
82271836 CTCATATGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (20 bp):
GCCCATATTAAAACAGTTGG
Found at i:82277539 original size:91 final size:91
Alignment explanation
Indices: 82277437--82277621 Score: 370
Period size: 91 Copynumber: 2.0 Consensus size: 91
82277427 TAACATCAAT
82277437 AAACACTTTTAAGACATATTTAATAAAACTAATGTGAACTAAATTTAATATGTGGTTTATTAATT
1 AAACACTTTTAAGACATATTTAATAAAACTAATGTGAACTAAATTTAATATGTGGTTTATTAATT
82277502 AACTAATTAATGAACTTATTAAATAA
66 AACTAATTAATGAACTTATTAAATAA
82277528 AAACACTTTTAAGACATATTTAATAAAACTAATGTGAACTAAATTTAATATGTGGTTTATTAATT
1 AAACACTTTTAAGACATATTTAATAAAACTAATGTGAACTAAATTTAATATGTGGTTTATTAATT
82277593 AACTAATTAATGAACTTATTAAATAA
66 AACTAATTAATGAACTTATTAAATAA
82277619 AAA
1 AAA
82277622 TTTAATAGCA
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 94 1.00
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.38
Consensus pattern (91 bp):
AAACACTTTTAAGACATATTTAATAAAACTAATGTGAACTAAATTTAATATGTGGTTTATTAATT
AACTAATTAATGAACTTATTAAATAA
Found at i:82286353 original size:9 final size:9
Alignment explanation
Indices: 82286339--82286383 Score: 56
Period size: 9 Copynumber: 4.8 Consensus size: 9
82286329 ACCCACATAA
82286339 TATTTTTTT
1 TATTTTTTT
82286348 TATTTTTTT
1 TATTTTTTT
82286357 TATTTTTTT
1 TATTTTTTT
82286366 CATATTTTCTTT
1 --TATTTT-TTT
82286378 T-TTTTT
1 TATTTTT
82286384 CTGTACTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
8 1 0.03
9 22 0.67
10 1 0.03
11 6 0.18
12 3 0.09
ACGTcount: A:0.11, C:0.04, G:0.00, T:0.84
Consensus pattern (9 bp):
TATTTTTTT
Found at i:82286362 original size:18 final size:20
Alignment explanation
Indices: 82286339--82286383 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
82286329 ACCCACATAA
82286339 TATTTTTTT-TATTTT-TTT
1 TATTTTTTTATATTTTCTTT
82286357 TATTTTTTTCATATTTTCTTT
1 TATTTTTTT-ATATTTTCTTT
82286378 T-TTTTT
1 TATTTTT
82286384 CTGTACTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 9 0.38
20 11 0.46
21 4 0.17
ACGTcount: A:0.11, C:0.04, G:0.00, T:0.84
Consensus pattern (20 bp):
TATTTTTTTATATTTTCTTT
Found at i:82289751 original size:23 final size:23
Alignment explanation
Indices: 82289711--82290014 Score: 331
Period size: 23 Copynumber: 13.2 Consensus size: 23
82289701 GGAATCTATA
*
82289711 GGCTACAATAT-AGTGGTAGCTTT
1 GGCTACAAT-TCAGTGGTAGCTTC
*
82289734 GGCTAC-ATCTCAGGGGTAGCTTC
1 GGCTACAAT-TCAGTGGTAGCTTC
82289757 GGCTACAATAT-AGTGGTAGCTTC
1 GGCTACAAT-TCAGTGGTAGCTTC
* *
82289780 AGCTACAATTTAGTGGTAGCTTC
1 GGCTACAATTCAGTGGTAGCTTC
82289803 GGCTACAATAT-AGTGGTAGCTTC
1 GGCTACAAT-TCAGTGGTAGCTTC
*
82289826 AGCTACAATAT-AGTGGTAGCTTC
1 GGCTACAAT-TCAGTGGTAGCTTC
*
82289849 GGTTAC-ATCTCAGTGGTAGCTTC
1 GGCTACAAT-TCAGTGGTAGCTTC
*
82289872 GGCTACAATACAGTGGTAGCTTC
1 GGCTACAATTCAGTGGTAGCTTC
*
82289895 GGCTACAATAT-AATGGTAGCTTC
1 GGCTACAAT-TCAGTGGTAGCTTC
*
82289918 AGCTAC-ATCTCAGTGGTAGCTTC
1 GGCTACAAT-TCAGTGGTAGCTTC
82289941 GGCTAC-ATCTCAGTGGTAGCTTC
1 GGCTACAAT-TCAGTGGTAGCTTC
*
82289964 GGCTACAATACAGTGGTAGCTTC
1 GGCTACAATTCAGTGGTAGCTTC
* * *
82289987 GGCTAC-GTTACAGTGATAGCTTT
1 GGCTACAATT-CAGTGGTAGCTTC
82290010 GGCTA
1 GGCTA
82290015 TATTATAGTG
Statistics
Matches: 247, Mismatches: 24, Indels: 20
0.85 0.08 0.07
Matches are distributed among these distances:
22 11 0.04
23 228 0.92
24 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (23 bp):
GGCTACAATTCAGTGGTAGCTTC
Found at i:82289778 original size:46 final size:46
Alignment explanation
Indices: 82289711--82289992 Score: 376
Period size: 46 Copynumber: 6.1 Consensus size: 46
82289701 GGAATCTATA
* *
82289711 GGCTACAATATAGTGGTAGCTTTGGCTAC-ATCTCAGGGGTAGCTTC
1 GGCTACAATATAGTGGTAGCTTCGGCTACAAT-TCAGTGGTAGCTTC
* *
82289757 GGCTACAATATAGTGGTAGCTTCAGCTACAATTTAGTGGTAGCTTC
1 GGCTACAATATAGTGGTAGCTTCGGCTACAATTCAGTGGTAGCTTC
*
82289803 GGCTACAATATAGTGGTAGCTTCAGCTACAATAT-AGTGGTAGCTTC
1 GGCTACAATATAGTGGTAGCTTCGGCTACAAT-TCAGTGGTAGCTTC
* * *
82289849 GGTTAC-ATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTC
1 GGCTACAATAT-AGTGGTAGCTTCGGCTACAATTCAGTGGTAGCTTC
* *
82289895 GGCTACAATATAATGGTAGCTTCAGCTAC-ATCTCAGTGGTAGCTTC
1 GGCTACAATATAGTGGTAGCTTCGGCTACAAT-TCAGTGGTAGCTTC
* *
82289941 GGCTAC-ATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTC
1 GGCTACAATAT-AGTGGTAGCTTCGGCTACAATTCAGTGGTAGCTTC
82289987 GGCTAC
1 GGCTAC
82289993 GTTACAGTGA
Statistics
Matches: 211, Mismatches: 17, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
45 8 0.04
46 195 0.92
47 8 0.04
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (46 bp):
GGCTACAATATAGTGGTAGCTTCGGCTACAATTCAGTGGTAGCTTC
Found at i:82289823 original size:69 final size:69
Alignment explanation
Indices: 82289722--82290014 Score: 396
Period size: 69 Copynumber: 4.2 Consensus size: 69
82289712 GCTACAATAT
* * *
82289722 AGTGGTAGCTTTGGCTACATCTCAGGGGTAGCTTCGGCTACAATATAGTGGTAGCTTCAGCTACA
1 AGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAATATAGTGGTAGCTTCAGCTAC-
*
82289787 AT-TT
65 ATCTC
* * *
82289791 AGTGGTAGCTTCGGCTACAATAT-AGTGGTAGCTTCAGCTACAATATAGTGGTAGCTTCGGTTAC
1 AGTGGTAGCTTCGGCTAC-ATATCAGTGGTAGCTTCGGCTACAATATAGTGGTAGCTTCAGCTAC
82289855 ATCTC
65 ATCTC
*
82289860 AGTGGTAGCTTCGGCTACA-ATACAGTGGTAGCTTCGGCTACAATATAATGGTAGCTTCAGCTAC
1 AGTGGTAGCTTCGGCTACATAT-CAGTGGTAGCTTCGGCTACAATATAGTGGTAGCTTCAGCTAC
82289924 ATCTC
65 ATCTC
* * * *
82289929 AGTGGTAGCTTCGGCTACATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTCGGCTACG
1 AGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAATATAGTGGTAGCTTCAGCTACA
82289994 T-TAC
66 TCT-C
* *
82289998 AGTGATAGCTTTGGCTA
1 AGTGGTAGCTTCGGCTA
82290015 TATTATAGTG
Statistics
Matches: 200, Mismatches: 18, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
67 2 0.01
68 4 0.02
69 190 0.95
70 4 0.02
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.31
Consensus pattern (69 bp):
AGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAATATAGTGGTAGCTTCAGCTACA
TCTC
Found at i:82294123 original size:69 final size:69
Alignment explanation
Indices: 82294012--82294315 Score: 414
Period size: 69 Copynumber: 4.4 Consensus size: 69
82294002 GGAATCTATA
* *
82294012 GGCTACAATATAGTGGTAGCTTTGGCTACATCTCAGTGGTAGCTTCGGCTACAATATAGTGGTAG
1 GGCTACAATATAGTGGTAGCTTCGGCTACATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAG
82294077 CTTC
66 CTTC
*
82294081 GGCTACAATATAGTGGTAGCTTCGGTTACATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAG
1 GGCTACAATATAGTGGTAGCTTCGGCTACATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAG
*
82294146 CTTT
66 CTTC
* * * *
82294150 GACTATAATATAATGGTAGCTTCGGCTACATCTCAGTGGTAGCTTCGGCTACAGTACAGTGGTAG
1 GGCTACAATATAGTGGTAGCTTCGGCTACATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAG
*
82294215 CTTT
66 CTTC
* * * *
82294219 GGCTA-TATCTCAGTGGTAGCTTCGGCTACAAT-ACAGTGGTAGCTTTGGCTACAATACAGTGGT
1 GGCTACAATAT-AGTGGTAGCTTCGGCTAC-ATCTCAGTGGTAGCTTCGGCTACAATACAGTGGT
82294282 AGCTTC
64 AGCTTC
* ** * *
82294288 AGCTACGCTACAGTGATAGCTTCGGCTA
1 GGCTACAATATAGTGGTAGCTTCGGCTA
82294316 TATTATAGTG
Statistics
Matches: 209, Mismatches: 23, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
68 3 0.01
69 203 0.97
70 3 0.01
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.31
Consensus pattern (69 bp):
GGCTACAATATAGTGGTAGCTTCGGCTACATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAG
CTTC
Found at i:82294325 original size:23 final size:23
Alignment explanation
Indices: 82294012--82294315 Score: 346
Period size: 23 Copynumber: 13.2 Consensus size: 23
82294002 GGAATCTATA
* *
82294012 GGCTACAATATAGTGGTAGCTTT
1 GGCTACAATACAGTGGTAGCTTC
*
82294035 GGCTAC-ATCTCAGTGGTAGCTTC
1 GGCTACAAT-ACAGTGGTAGCTTC
*
82294058 GGCTACAATATAGTGGTAGCTTC
1 GGCTACAATACAGTGGTAGCTTC
*
82294081 GGCTACAATATAGTGGTAGCTTC
1 GGCTACAATACAGTGGTAGCTTC
* *
82294104 GGTTAC-ATCTCAGTGGTAGCTTC
1 GGCTACAAT-ACAGTGGTAGCTTC
*
82294127 GGCTACAATACAGTGGTAGCTTT
1 GGCTACAATACAGTGGTAGCTTC
* * * *
82294150 GACTATAATATAATGGTAGCTTC
1 GGCTACAATACAGTGGTAGCTTC
*
82294173 GGCTAC-ATCTCAGTGGTAGCTTC
1 GGCTACAAT-ACAGTGGTAGCTTC
* *
82294196 GGCTACAGTACAGTGGTAGCTTT
1 GGCTACAATACAGTGGTAGCTTC
* *
82294219 GGCTA-TATCTCAGTGGTAGCTTC
1 GGCTACAAT-ACAGTGGTAGCTTC
*
82294242 GGCTACAATACAGTGGTAGCTTT
1 GGCTACAATACAGTGGTAGCTTC
82294265 GGCTACAATACAGTGGTAGCTTC
1 GGCTACAATACAGTGGTAGCTTC
* ** *
82294288 AGCTACGCTACAGTGATAGCTTC
1 GGCTACAATACAGTGGTAGCTTC
82294311 GGCTA
1 GGCTA
82294316 TATTATAGTG
Statistics
Matches: 236, Mismatches: 37, Indels: 16
0.82 0.13 0.06
Matches are distributed among these distances:
22 7 0.03
23 222 0.94
24 7 0.03
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.31
Consensus pattern (23 bp):
GGCTACAATACAGTGGTAGCTTC
Found at i:82300549 original size:6 final size:6
Alignment explanation
Indices: 82300517--82300611 Score: 93
Period size: 6 Copynumber: 15.5 Consensus size: 6
82300507 AATAAAATTG
* * * * *
82300517 AAATGA AAATAA AAATCA AAAGAA AAAGAA AAATAA AATAAAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AA-ATAA AAATAA
* *
82300566 AAATAA AAATAA AAATAA GAATAA ATAATAA ATAA-AT AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA A-AATAA A-AATAA AAATAA AAA
82300612 GGAGGATTCA
Statistics
Matches: 75, Mismatches: 11, Indels: 6
0.82 0.12 0.07
Matches are distributed among these distances:
5 2 0.03
6 59 0.79
7 14 0.19
ACGTcount: A:0.79, C:0.01, G:0.04, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:82300572 original size:43 final size:43
Alignment explanation
Indices: 82300517--82300611 Score: 120
Period size: 43 Copynumber: 2.2 Consensus size: 43
82300507 AATAAAATTG
* *
82300517 AAATGAAAATAAAAATCAAAAGAAAAAGAAA-AATAAAATAAAA
1 AAATAAAAATAAAAATAAAAAGAAAAAGAAATAAT-AAATAAAA
* * * *
82300560 AAATAAAAATAAAAATAAAAATAAGAATAAATAATAAATAAAT
1 AAATAAAAATAAAAATAAAAAGAAAAAGAAATAATAAATAAAA
82300603 AAATAAAAA
1 AAATAAAAA
82300612 GGAGGATTCA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
43 42 0.93
44 3 0.07
ACGTcount: A:0.79, C:0.01, G:0.04, T:0.16
Consensus pattern (43 bp):
AAATAAAAATAAAAATAAAAAGAAAAAGAAATAATAAATAAAA
Found at i:82300596 original size:31 final size:28
Alignment explanation
Indices: 82300497--82300611 Score: 95
Period size: 31 Copynumber: 3.8 Consensus size: 28
82300487 TATGTCTTTC
**
82300497 AAAATAAAATAATAAAATTGAAATGAAAATA
1 AAAATAAAA-AA-AAAATAAAAAT-AAAATA
* *
82300528 AAAATCAAAAGAAAAAGAAAAATAAAATAAA
1 AAAAT-AAAAAAAAAATAAAAATAAAAT--A
82300559 AAAATAAAAATAAAAATAAAAATAAGAATA
1 AAAATAAAAA-AAAAATAAAAATAA-AATA
*
82300589 AATAATAAATAAATAAATAAAAA
1 AA-AATAAA-AAAAAAATAAAAA
82300612 GGAGGATTCA
Statistics
Matches: 70, Mismatches: 7, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
29 5 0.07
30 15 0.21
31 41 0.59
32 9 0.13
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.17
Consensus pattern (28 bp):
AAAATAAAAAAAAAATAAAAATAAAATA
Found at i:82306016 original size:13 final size:13
Alignment explanation
Indices: 82305994--82306026 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
82305984 AAGGGTTTGT
82305994 TTAT-TAAACTAA
1 TTATCTAAACTAA
82306006 TTATCTAAACTAA
1 TTATCTAAACTAA
*
82306019 TTAACTAA
1 TTATCTAA
82306027 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:82309286 original size:25 final size:25
Alignment explanation
Indices: 82309258--82309310 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 25
82309248 AAACTCCTCC
*
82309258 GAGCTG-AAATACGGTAAGCTCATAT
1 GAGCTGCAAAT-CAGTAAGCTCATAT
82309283 GAGCTGCAAATCAGTAAGCTCATAT
1 GAGCTGCAAATCAGTAAGCTCATAT
82309308 GAG
1 GAG
82309311 TTGTGGTGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 22 0.85
26 4 0.15
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.23
Consensus pattern (25 bp):
GAGCTGCAAATCAGTAAGCTCATAT
Found at i:82309739 original size:26 final size:26
Alignment explanation
Indices: 82309710--82309765 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
82309700 TGGTACAAAT
82309710 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
82309736 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82309762 TGAT
1 TGAT
82309766 GGGCATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:82315938 original size:11 final size:11
Alignment explanation
Indices: 82315922--82315946 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
82315912 GTTATTTAAA
82315922 TTTTTTATGAT
1 TTTTTTATGAT
82315933 TTTTTTATGAT
1 TTTTTTATGAT
82315944 TTT
1 TTT
82315947 AAATAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (11 bp):
TTTTTTATGAT
Found at i:82315986 original size:30 final size:29
Alignment explanation
Indices: 82315942--82316015 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 29
82315932 TTTTTTTATG
82315942 ATTTTAAATAATTTT-AAATACCCTTTTACAA
1 ATTTT-AAT-ATTTTAAAATA-CCTTTTACAA
**
82315973 ATTTTATATATTTTAAAATATTTTTTACAA
1 ATTTTA-ATATTTTAAAATACCTTTTACAA
*
82316003 TTTTTAATATTTT
1 ATTTTAATATTTT
82316016 TGTATCTAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
29 7 0.18
30 19 0.50
31 12 0.32
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (29 bp):
ATTTTAATATTTTAAAATACCTTTTACAA
Found at i:82316472 original size:23 final size:26
Alignment explanation
Indices: 82316426--82316478 Score: 67
Period size: 23 Copynumber: 2.2 Consensus size: 26
82316416 TCGATTCGAG
82316426 TCGAATCAAGTAAACAAAATTTCAAA
1 TCGAATCAAGTAAACAAAATTTCAAA
* *
82316452 TCGAATCGAG-AAA-AAAA-TTCAAG
1 TCGAATCAAGTAAACAAAATTTCAAA
82316475 TCGA
1 TCGA
82316479 GTTAACGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 9 0.36
24 4 0.16
25 3 0.12
26 9 0.36
ACGTcount: A:0.51, C:0.15, G:0.13, T:0.21
Consensus pattern (26 bp):
TCGAATCAAGTAAACAAAATTTCAAA
Found at i:82323994 original size:13 final size:13
Alignment explanation
Indices: 82323976--82324000 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82323966 AAATAATAAA
82323976 TTAAATTTTTTAG
1 TTAAATTTTTTAG
82323989 TTAAATTTTTTA
1 TTAAATTTTTTA
82324001 TTTATTTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
TTAAATTTTTTAG
Found at i:82330648 original size:143 final size:143
Alignment explanation
Indices: 82330436--82330753 Score: 365
Period size: 143 Copynumber: 2.2 Consensus size: 143
82330426 TTTGAACCTG
* * * * ** * ** *
82330436 CTCCACTGCAACTTCAGGCAGATGAGGTTTG-TGT-ATTTGTGGCTTCAATCTGTTCCGTTGCGA
1 CTCCACTGCAACTTCAGGGAGATAAGATTCGCCATAATTTGTAGCTTCAATCTGTTCCACTGCAA
* * * *
82330499 CATTAGGGAAATGAGATTCGCTGTCTTT-ATTCTG-TTCCGCTGCAACTTCTGGGAGATAAGACT
66 CATTAGGGAAATAAGATTCGCTAT-TTTCAGTCTGCTT-CGCTGCAACTTCAGGGAGATAAGACT
* * *
82330562 TGTGGCTTCAATTTG
129 CGTGGCTTCAATATA
* *
82330577 CTCTACTGCAACTTCAGGGAGATAAGATTCGCCATAATTTGTAGCTTCAGTCTGTTCCACTGCAA
1 CTCCACTGCAACTTCAGGGAGATAAGATTCGCCATAATTTGTAGCTTCAATCTGTTCCACTGCAA
* *
82330642 CTTTAGGGAAATAAGATTCGCTATTTTCAGTCTGCTTCGTTGCAACTTCAGGGAGATAAGACTCG
66 CATTAGGGAAATAAGATTCGCTATTTTCAGTCTGCTTCGCTGCAACTTCAGGGAGATAAGACTCG
82330707 TGGCTTCAATATA
131 TGGCTTCAATATA
* * * *
82330720 CTCCATTGTAACTTTAGGGAGATAAGATTTGCCA
1 CTCCACTGCAACTTCAGGGAGATAAGATTCGCCA
82330754 CAATAACTTA
Statistics
Matches: 147, Mismatches: 26, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
141 26 0.18
142 4 0.03
143 115 0.78
144 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (143 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTCGCCATAATTTGTAGCTTCAATCTGTTCCACTGCAA
CATTAGGGAAATAAGATTCGCTATTTTCAGTCTGCTTCGCTGCAACTTCAGGGAGATAAGACTCG
TGGCTTCAATATA
Found at i:82339739 original size:31 final size:30
Alignment explanation
Indices: 82339673--82339742 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 30
82339663 ATTTTATCAT
**
82339673 AAATTATATATGTAATAAATTTTAAAAACA
1 AAATTATATATCAAATAAATTTTAAAAACA
* *
82339703 CAATTATATATACAAATAGATTTTAAAAA-A
1 AAATTATATAT-CAAATAAATTTTAAAAACA
82339733 GAAATTATAT
1 -AAATTATAT
82339743 GTATAAAATA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
30 11 0.33
31 22 0.67
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.36
Consensus pattern (30 bp):
AAATTATATATCAAATAAATTTTAAAAACA
Found at i:82340141 original size:22 final size:21
Alignment explanation
Indices: 82340109--82340151 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
82340099 TTAAAAAAAC
* *
82340109 AAATAATAAAATCTTAAATAA
1 AAATAATAAAAACATAAATAA
82340130 AAATGAATAAAAACATAAATAA
1 AAAT-AATAAAAACATAAATAA
82340152 GTAAATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.70, C:0.05, G:0.02, T:0.23
Consensus pattern (21 bp):
AAATAATAAAAACATAAATAA
Found at i:82342324 original size:24 final size:24
Alignment explanation
Indices: 82342285--82342334 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
82342275 CCGGTTAGGT
* * *
82342285 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGATGATCCGACGAGCCA
*
82342309 TCCCGGCGATGATCCGGCGAGCCA
1 TCCCGGCGATGATCCGACGAGCCA
82342333 TC
1 TC
82342335 TCGGGATACA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.14, C:0.40, G:0.30, T:0.16
Consensus pattern (24 bp):
TCCCGGCGATGATCCGACGAGCCA
Found at i:82342478 original size:58 final size:56
Alignment explanation
Indices: 82342377--82342490 Score: 174
Period size: 58 Copynumber: 2.0 Consensus size: 56
82342367 CCCAATCCTA
* *
82342377 AAAGGTAGAATTCGGATAGTTACATGTTCGGTACCCAATAATGAATGAATCGTCCC
1 AAAGGTAGAATTCGGATAGTTACATGTCCGGTACCCAACAATGAATGAATCGTCCC
* *
82342433 AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATCGTCCC
1 AAAGGTAGAATTCGGATA--GTTACATGTCCGGTACCCAACAATGAATGAATCGTCCC
82342491 TGTCTCTCCC
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
56 17 0.33
58 35 0.67
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (56 bp):
AAAGGTAGAATTCGGATAGTTACATGTCCGGTACCCAACAATGAATGAATCGTCCC
Found at i:82342779 original size:21 final size:22
Alignment explanation
Indices: 82342753--82342793 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
82342743 TCGCCTGGTA
82342753 GCCTGGTAGC-GCCTGGTAGGC
1 GCCTGGTAGCAGCCTGGTAGGC
*
82342774 GCCTGGTAGCAGTCTGGTAG
1 GCCTGGTAGCAGCCTGGTAG
82342794 CAAGCAAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.12, C:0.24, G:0.41, T:0.22
Consensus pattern (22 bp):
GCCTGGTAGCAGCCTGGTAGGC
Found at i:82342795 original size:11 final size:10
Alignment explanation
Indices: 82342744--82342794 Score: 61
Period size: 11 Copynumber: 5.1 Consensus size: 10
82342734 ACATGAATGT
82342744 CGCCTGGTA-
1 CGCCTGGTAG
82342753 -GCCTGGTAG
1 CGCCTGGTAG
82342762 CGCCTGGTAGG
1 CGCCTGGTA-G
82342773 CGCCTGGTAG
1 CGCCTGGTAG
*
82342783 CAGTCTGGTAG
1 C-GCCTGGTAG
82342794 C
1 C
82342795 AAGCAAGCGT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
8 8 0.22
10 10 0.27
11 19 0.51
ACGTcount: A:0.12, C:0.27, G:0.39, T:0.22
Consensus pattern (10 bp):
CGCCTGGTAG
Found at i:82349456 original size:42 final size:42
Alignment explanation
Indices: 82349363--82350400 Score: 876
Period size: 42 Copynumber: 24.5 Consensus size: 42
82349353 CACATTGCTG
* * * * * *
82349363 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGAC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * * *
82349406 GTTTGTCGTGCGGGAGCTTCGGGCACTATCGGCACCTAGCCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * * * * **
82349448 CTTGGTCGTGTGAGAACCTCGGGCACCACCGGCACCTTGGTA
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * * * *
82349490 GTTGGAT-GTTCGGGAGCCTTGGACACCATCGGCAACCTAGACC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *** **
82349533 CCTGGTCGCATGGGAGCCTC-GATACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * * *
82349575 CTTTGTCGTGCGAGAGCCTCAGGCACCATCGGAACCTAGTCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
82349617 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
82349659 CCTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
82349702 CTTGGTCGTACGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* ** * *
82349744 CCTGGTCGTGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * **
82349787 CTTGGTCGTGCGAGAGCCTTGGGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
82349829 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * *
82349872 CCTGGTCGTGCGGGAGCCTCAGGCACCATCGGTAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCC
*
82349915 CTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * *** *
82349956 CTTGTTCGTACGGGAGCCTCTACCATCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
82349998 TTTGGAT-GTGCGGGAGCCTCGGGCACCATCCGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
82350041 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-C
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * *
82350083 CTTGATCGTGCGAGAACCTCGGGCACCATCGGCAACTTAGG-C
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * * * **
82350125 CTTGATCGTGCGAGAACCTCGGGCACCATCGGTACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* ** *
82350167 CTTGGAT-GTACGGGAGCCTCGAACACCATCGGCAGCCTCGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCA-CCTAGGCC
* * *
82350210 CTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CC
* * * * * **
82350253 CTTAGAT-GTGCGGGAACCTCGGGCAGCATTGGCACCTTGGTG
1 CTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * * ** * * **
82350295 CTTGGAT-GTGCAGGAGCCGCGTGCAGTATTGGCACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * * *
82350337 CTTGGAT-GTACGGGAGCCTCGGACACCATCGGAAACCTAGGAC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCC
* *
82350380 GTTGGAT-GTGCGGGTGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCG
82350401 AGCAGCAGGG
Statistics
Matches: 815, Mismatches: 158, Indels: 44
0.80 0.16 0.04
Matches are distributed among these distances:
41 32 0.04
42 452 0.55
43 329 0.40
44 2 0.00
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.20
Consensus pattern (42 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
Found at i:82349539 original size:85 final size:86
Alignment explanation
Indices: 82349363--82350400 Score: 941
Period size: 85 Copynumber: 12.2 Consensus size: 86
82349353 CACATTGCTG
* * * * * * * * *
82349363 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGACGTTTG-TCGTGCGGGAGCTTCG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGATCGTGCGGGAGCCTCG
* *
82349427 GGCACTATCGGC-ACCTAGCCC
65 GGCACCATCGGCAACCTAGGCC
* * * * * *** * *
82349448 CTTGGTCGTGTGAGAACCTCGGGCACCACCGGCACCTTGGTAGTTGGAT-GTTCGGGAGCCTTGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGATCGTGCGGGAGCCTCGG
* *
82349512 ACACCATCGGCAACCTAGACC
66 GCACCATCGGCAACCTAGGCC
* *** ** * * *
82349533 CCTGGTCGCATGGGAGCCTC-GATACCATCGGCAACCTAGGCCCTTTG-TCGTGCGAGAGCCTCA
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGATCGTGCGGGAGCCTCG
*
82349596 GGCACCATCGG-AACCTAGTCC
65 GGCACCATCGGCAACCTAGGCC
* * *
82349617 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGATCGTGCGGGAGCCTCGG
*
82349681 CCACCATCGGCAACCTAGGCC
66 GCACCATCGGCAACCTAGGCC
* * * ** *
82349702 CTTGGTCGTACGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGG-TCGTGTAGGAGCTTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGATCGTGCGGGAGCCTCGG
*
82349766 CCACCATCGGCAACCTAGGCC
66 GCACCATCGGCAACCTAGGCC
* * * **
82349787 CTTGGTCGTGCGAGAGCCTTGGGCACCATCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGATCGTGCGGGAGCCTCGG
82349851 GCACCATCGGCAACCTAGGCC
66 GCACCATCGGCAACCTAGGCC
* * * *
82349872 CCTGGTCGTGCGGGAGCCTCAGGCACCATCGGTAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGATCGTGCGGGAGCCTCG
82349936 GG-ACCATCGGC-ACCTAGGCC
65 GGCACCATCGGCAACCTAGGCC
* * *** * *
82349956 CTTGTTCGTACGGGAGCCTCTACCATCATCGGCACCTAGGCCTTTGGAT-GTGCGGGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGATCGTGCGGGAGCCTCGG
*
82350020 GCACCATCCGCAACCTAGGCC
66 GCACCATCGGCAACCTAGGCC
* * *
82350041 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCTT-GATCGTGCGAGAACCTCG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGATCGTGCGGGAGCCTCG
*
82350104 GGCACCATCGGCAACTTAGG-C
65 GGCACCATCGGCAACCTAGGCC
* * * * * ** * *
82350125 CTTGATCGTGCGAGAACCTCGGGCACCATCGGTACCTTGGTGCTTGGAT-GTACGGGAGCCTCGA
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGATCGTGCGGGAGCCTCGG
* * *
82350189 ACACCATCGGCAGCCTCGGCC
66 GCACCATCGGCAACCTAGGCC
* * * * *
82350210 CTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTAGAT-GTGCGGGAACCTCG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCCTTGGATCGTGCGGGAGCCTCG
* * * **
82350274 GGCAGCATTGGC-ACCTTGGTG
65 GGCACCATCGGCAACCTAGGCC
* * * ** * * ** *
82350295 CTTGGAT-GTGCAGGAGCCGCGTGCAGTATTGGCACCTTGGTGCTTGGAT-GTACGGGAGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGATCGTGCGGGAGCCTCG
* * *
82350358 GACACCATCGGAAACCTAGGAC
65 GGCACCATCGGCAACCTAGGCC
* *
82350380 GTTGGAT-GTGCGGGTGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCG
82350401 AGCAGCAGGG
Statistics
Matches: 775, Mismatches: 158, Indels: 40
0.80 0.16 0.04
Matches are distributed among these distances:
83 34 0.04
84 231 0.30
85 449 0.58
86 61 0.08
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.20
Consensus pattern (86 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGATCGTGCGGGAGCCTCGG
GCACCATCGGCAACCTAGGCC
Found at i:82349582 original size:169 final size:169
Alignment explanation
Indices: 82349388--82350377 Score: 1043
Period size: 169 Copynumber: 5.8 Consensus size: 169
82349378 GCCTTGGACG
* * * * * *
82349388 CCATCGGCAACCTAGGACGTTTGTCGTGCGGGAGCTTCGGGCACTATCGGCACCTAGCCCCTTGG
1 CCATCGGCAACCTAGGCCCTTTGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* * * * *
82349453 TCGTGTGAGAACCTCGGGCACCACCGGCACCTTGGTAGTTGGATGTTCGGGAGCCTTGGACACCA
66 TCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGT-GTTGGATGTGCGGGAGCCTCGGACACCA
* * * **
82349518 TCGGCAACCTAGACCCCTGGTCGCATGGGAGCCTC-GATA
130 TCGGCAACCTAGGCCCCTGGTCGTACGGGAGCCTCGGGCA
* * *
82349557 CCATCGGCAACCTAGGCCCTTTGTCGTGCGAGAGCCTCAGGCACCATCGGAACCTAGTCCCTTGG
1 CCATCGGCAACCTAGGCCCTTTGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* * *** *
82349622 TCGTGCGAGAGCCTCGGGCACCATCGGAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGCCACC
66 TCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGG-TGTTGGAT-GTGCGGGAGCCTCGGACACC
* *
82349686 ATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGCCA
129 ATCGGCAACCTAGGCCCCTGGTCGTACGGGAGCCTCGGGCA
* * * * *
82349727 CCATCGGC-ACCTAGGCCCCTGGTCGTG-TAGGAGCTTCGGCCACCATCGGCAACCTAGGCCCTT
1 CCATCGGCAACCTAGGCCCTTTGTCGTGCGA-GAGCCTCGGGCACCATCGGC-ACCTAGGCCCTT
* *
82349790 GGTCGTGCGAGAGCCTTGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCAC
64 GGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTG-TTGGATGTGCGGGAGCCTCGGACAC
* *
82349855 CATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCAGGCA
128 CATCGGCAACCTAGGCCCCTGGTCGTACGGGAGCCTCGGGCA
* * *
82349897 CCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCCCTTGT
1 CCATCGGCAACCTAGGCCCTTTGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* * *** * * *
82349961 TCGTACGGGAGCCTCTACCATCATCGGCACCTAGGCCT-TTGGATGTGCGGGAGCCTCGGGCACC
66 TCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGG--TGTTGGATGTGCGGGAGCCTCGGACACC
* *
82350025 ATCCGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCA
129 ATCGGCAACCTAGGCCCCTGGTCGTACGGGAGCCTCGGGCA
* *
82350066 CCATCGGCAACCTAGG-CC-TTGATCGTGCGAGAACCTCGGGCACCATCGGCAACTTAGG-CCTT
1 CCATCGGCAACCTAGGCCCTTTG-TCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTT
* * * * *
82350128 GATCGTGCGAGAACCTCGGGCACCATCGGTACCTTGGTGCTTGGATGTACGGGAGCCTCGAACAC
64 GGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTG-TTGGATGTGCGGGAGCCTCGGACAC
* * * * *
82350193 CATCGGCAGCCTCGGCCCTTGGTTGTGCGGGAGCCTCGGGCA
128 CATCGGCAACCTAGGCCCCTGGTCGTACGGGAGCCTCGGGCA
* * * * * * * * **
82350235 CCATCGGC-ACCTTGGTGCCTTAGAT-GTGCGGGAACCTCGGGCAGCATTGGCACCTTGGTGCTT
1 CCATCGGCAACCTAGG-CCCTTTG-TCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTT
* * ** * *
82350298 GGAT-GTGC-AGGAGCCGCGTGCAGTATTGGCACCTTGGTGCTTGGATGTACGGGAGCCTCGGAC
64 GG-TCGTGCGA-GAGCCTCGGGCACCATCGGCACCTTGGTG-TTGGATGTGCGGGAGCCTCGGAC
*
82350361 ACCATCGGAAACCTAGG
126 ACCATCGGCAACCTAGG
82350378 ACGTTGGATG
Statistics
Matches: 697, Mismatches: 102, Indels: 43
0.83 0.12 0.05
Matches are distributed among these distances:
167 3 0.00
168 27 0.04
169 405 0.58
170 228 0.33
171 33 0.05
172 1 0.00
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (169 bp):
CCATCGGCAACCTAGGCCCTTTGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
TCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTGTTGGATGTGCGGGAGCCTCGGACACCAT
CGGCAACCTAGGCCCCTGGTCGTACGGGAGCCTCGGGCA
Found at i:82350100 original size:23 final size:23
Alignment explanation
Indices: 82350074--82350143 Score: 58
Period size: 23 Copynumber: 3.2 Consensus size: 23
82350064 CACCATCGGC
82350074 AACCTAGGCCTTGATCGTGCGAG
1 AACCTAGGCCTTGATCGTGCGAG
* * ***
82350097 AACCTCGGGCACCATCG-GC---
1 AACCTAGGCCTTGATCGTGCGAG
*
82350116 AACTTAGGCCTTGATCGTGCGAG
1 AACCTAGGCCTTGATCGTGCGAG
82350139 AACCT
1 AACCT
82350144 CGGGCACCAT
Statistics
Matches: 31, Mismatches: 12, Indels: 8
0.61 0.24 0.16
Matches are distributed among these distances:
19 11 0.35
20 2 0.06
22 2 0.06
23 16 0.52
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (23 bp):
AACCTAGGCCTTGATCGTGCGAG
Found at i:82356133 original size:58 final size:59
Alignment explanation
Indices: 82356042--82356162 Score: 174
Period size: 58 Copynumber: 2.1 Consensus size: 59
82356032 CCCTCCCCAA
* * *
82356042 TCCCAAAAGGTAGAATTCGGATATCGTTACATGTGC-GGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGT-CTGATACCCAACAATGAATGAATCG
* *
82356101 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCTGATACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCTGATACCCAACAATGAATGAATCG
82356159 TCCC
1 TCCC
82356163 TGTCCCTCCC
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
57 1 0.02
58 51 0.91
59 4 0.07
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.25
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCTGATACCCAACAATGAATGAATCG
Found at i:82362908 original size:47 final size:47
Alignment explanation
Indices: 82362837--82363427 Score: 1002
Period size: 47 Copynumber: 12.6 Consensus size: 47
82362827 CCCTTCGGGA
* * * * * *
82362837 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
82362884 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82362931 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
82362978 CTTATCACATATATACACTTTCATATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82363025 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82363072 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82363119 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82363166 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82363213 CTTATCACATATATACACTTTCACATTCATCACATCGGCAATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82363260 ATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82363307 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82363354 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82363401 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
82363428 TATTCAAATA
Statistics
Matches: 514, Mismatches: 30, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 514 1.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:82363294 original size:25 final size:25
Alignment explanation
Indices: 82362887--82362965 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
82362877 ACTCGGCCCT
82362887 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * *
82362912 ATCACAT-T-GGC-CATTCGACCTT-
1 ATCACATATATACACTTTC-ACATTC
82362934 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
82362959 ATCACAT
1 ATCACAT
82362966 CGGCCATTAG
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 11 0.27
23 6 0.15
24 6 0.15
25 18 0.44
ACGTcount: A:0.33, C:0.29, G:0.04, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:82366513 original size:24 final size:24
Alignment explanation
Indices: 82366486--82366556 Score: 99
Period size: 24 Copynumber: 3.0 Consensus size: 24
82366476 TTAGGTTCTC
*
82366486 GGCGGTGCTCCGGCGATCCATCCT
1 GGCGGTGCTCCGGCGAGCCATCCT
* *
82366510 GGCGGTGCTCCTGCGAGCCATCCC
1 GGCGGTGCTCCGGCGAGCCATCCT
*
82366534 GGCAGTGCT-CGGCGAGCCATCCT
1 GGCGGTGCTCCGGCGAGCCATCCT
82366557 AAAATATCGA
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
23 12 0.29
24 29 0.71
ACGTcount: A:0.10, C:0.38, G:0.34, T:0.18
Consensus pattern (24 bp):
GGCGGTGCTCCGGCGAGCCATCCT
Found at i:82366838 original size:42 final size:42
Alignment explanation
Indices: 82366792--82367782 Score: 971
Period size: 42 Copynumber: 23.4 Consensus size: 42
82366782 TAGGACGTTT
*
82366792 GTCGTGCCGGAGCCTCGGGCACCATCGGCACCTA-GCCTCTTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC-CTTG
* * **
82366834 GTCGTGCGGGAGCCTCGGGCACCACCGGCACCTTGGTACTTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
* * *
82366876 GAT-GTGCGGGAGCCTAGGGCACCATCGGCAACCTCGGCCCCTG
1 G-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* * ** * *
82366919 GTCGCGCGGGAGTCTC-GATACCATTGGCAACCTAGGCCCTTC
1 GTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* *
82366961 GTCGTGCGAGAGCCTCGGGCACCATCGGAACCTAGGCCCTTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
* * * * * *
82367003 GCCGTGCGAGAGCCACGGGCACCATCGGAACCAAGGCCCCTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
* *
82367045 GTCGTGCGGGAGCCTCGGCCACTATCGGCAACCTAGGCCCTTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* *
82367088 GTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
** * *
82367130 GTCGTGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCCCTTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* *
82367173 GTCGTACGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
* * **
82367215 GTCGTGCGGGAGCCTTGGGCACCATCGGCACCTTGGTGCTTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
* * *
82367257 GAT-GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTA
1 G-TCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTG
82367300 GTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* * *
82367343 GTTGTGCGAGAGCCTCGGG-ACCATCGGCACCAAGGCCCTTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
* * * *
82367384 GTTGTGCGGGAGCCTCGGCCACCATCGACAACTAGGCCCTTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
* *
82367426 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTA
1 G-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* * *
82367469 GTCGTACGGGAGCCTCGGGCACCATCGACAAGCTAGG-CCTTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* * * * * **
82367511 ATCGTGCGAGAACCTCGGGCACCATTGGCACCTTGGTGCTTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
* ** *
82367553 GAT-ATGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTG
1 G-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* * * *
82367596 GTCGTGCGGGAGCCTCAGGAACCATCGGCACCTTGGTGCCTTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCCTTG
* ** * * **
82367639 GAT-GTGCGGGAGCCTCGAGCAGTATTGGCACCTTGGTGCTTG
1 G-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
* * * * **
82367681 GAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTG
1 G-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
* * *
82367723 GAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACGTTG
1 G-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
*
82367766 GAT-GTGCGGGTGCCTCG
1 G-TCGTGCGGGAGCCTCG
82367783 AGCAGCAGGG
Statistics
Matches: 797, Mismatches: 130, Indels: 43
0.82 0.13 0.04
Matches are distributed among these distances:
41 34 0.04
42 461 0.58
43 301 0.38
44 1 0.00
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (42 bp):
GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
Found at i:82366965 original size:127 final size:128
Alignment explanation
Indices: 82366792--82367782 Score: 1035
Period size: 127 Copynumber: 7.8 Consensus size: 128
82366782 TAGGACGTTT
*
82366792 GTCGTGCCGGAGCCTCGGGCACCATCGGC-ACCTA-GCCTCTTGGTCGTGCGGGAGCCTCGGGCA
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC-CTTGGTCGTGCGGGAGCCTCGGGCA
* * ** * *
82366855 CCACCGGCACCTTGGTACTTGGATGTGCGGGAGCCTAGGGCACCATCGGCAACCTCGGCCCCTG
65 CCATCGGCACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTG
* * ** * * *
82366919 GTCGCGCGGGAGTCTC-GATACCATTGGCAACCTAGGCCCTTCGTCGTGCGAGAGCCTCGGGCAC
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* ** * * *
82366983 CATCGGAACCTAGGCCCTTGGCCGTGCGAGAGCCACGGGCACCATCGG-AACCAAGGCCCCTG
66 CATCGGCACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTG
* * *
82367045 GTCGTGCGGGAGCCTCGGCCACTATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCAC
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* ** * * *
82367110 CATCGGCACCTAGGCCCCTGG-TCGTGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCCCTTG
66 CATCGGCACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTG
* * *
82367173 GTCGTACGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTTGGGCAC
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* ** * *
82367237 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTA
66 CATCGGCACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTG
* *
82367300 GTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTTGTGCGAGAGCCTCGGG-AC
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* * * * *
82367364 CATCGGCACCAAGGCCCTTGGTTGTGCGGGAGCCTCGGCCACCATCGACAA-CTAGGCCCTTG
66 CATCGGCACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTG
* * *
82367426 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTAGTCGTACGGGAGCCTCGGGCA
1 G-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * * ** *
82367490 CCATCGACAAGCTAGG-CCTT-GATCGTGCGAGAACCTCGGGCACCATTGGC-ACCTTGGTGCTT
65 CCATCGGC-ACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCT
82367552 G
128 G
* ** * * *
82367553 GAT-ATGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCCTCAGGAA
1 G-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * ** * * ** *
82367617 CCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCCTCGAGCAGTATTGGC-ACCTTGGTGCTTG
65 CCATCGGCACCTAGG-CCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTG
* * * * ** *
82367681 GAT-GTGCGGGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGAC
1 G-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGC
* * *
82367743 ACCATCGGCAACCTAGGACGTTGGATGTGCGGGTGCCTCG
64 ACCATCGGC-ACCTAGGCCCTTGGATGTGCGGGAGCCTCG
82367783 AGCAGCAGGG
Statistics
Matches: 727, Mismatches: 120, Indels: 34
0.83 0.14 0.04
Matches are distributed among these distances:
126 107 0.15
127 472 0.65
128 145 0.20
129 3 0.00
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (128 bp):
GTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
CATCGGCACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTG
Found at i:82367789 original size:85 final size:85
Alignment explanation
Indices: 82366792--82367782 Score: 1017
Period size: 85 Copynumber: 11.7 Consensus size: 85
82366782 TAGGACGTTT
*
82366792 GTCGTGCCGGAGCCTCGGGCACCATCGGC-ACCTA-GCCTCTTGGTCGTGCGGGAGCCTCGGGCA
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC-CTTGGTCGTGCGGGAGCCTCGGGCA
* * **
82366855 CCACCGGCACCTTGGTACTTG
65 CCATCGGCACCTAGGCCCTTG
* * * * * **
82366876 GAT-GTGCGGGAGCCTAGGGCACCATCGGCAACCTCGGCCCCTGGTCGCGCGGGAGTCTC-GATA
1 G-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
82366939 CCATTGGCAACCTAGGCCCTTC
65 CCATCGGC-ACCTAGGCCCTTG
* * * *
82366961 GTCGTGCGAGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGCCGTGCGAGAGCCACGGGCAC
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* * *
82367025 CATCGGAACCAAGGCCCCTG
66 CATCGGCACCTAGGCCCTTG
* * *
82367045 GTCGTGCGGGAGCCTCGGCCACTATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCAC
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
*
82367110 CATCGGCACCTAGGCCCCTG
66 CATCGGCACCTAGGCCCTTG
** * * * *
82367130 GTCGTGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGGCAC
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
82367195 CATCGGCACCTAGGCCCTTG
66 CATCGGCACCTAGGCCCTTG
* * **
82367215 GTCGTGCGGGAGCCTTGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCA
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * *
82367278 CCATCGGTAACCTAGGCCCCTA
65 CCATCGG-CACCTAGGCCCTTG
* *
82367300 GTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTTGTGCGAGAGCCTCGGG-AC
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
*
82367364 CATCGGCACCAAGGCCCTTG
66 CATCGGCACCTAGGCCCTTG
* * *
82367384 GTTGTGCGGGAGCCTCGGCCACCATCGACAA-CTAGGCCCTTGGAT-GTGCGGGAGCCTCGGGCA
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* *
82367447 CCATCGGCAACCTAGGCCCCTA
65 CCATCGGC-ACCTAGGCCCTTG
* * * * * *
82367469 GTCGTACGGGAGCCTCGGGCACCATCGACAAGCTAGG-CCTTGATCGTGCGAGAACCTCGGGCAC
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* * **
82367533 CATTGGCACCTTGGTGCTTG
66 CATCGGCACCTAGGCCCTTG
* ** * * *
82367553 GAT-ATGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCCTCAGGAA
1 G-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
82367617 CCATCGGCACCTTGGTGCCTTG
65 CCATCGGCACCTAGG-CCCTTG
* ** * * ** *
82367639 GAT-GTGCGGGAGCCTCGAGCAGTATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGC
1 G-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGC
* * * **
82367701 AGCATTGGCACCTTGGTGCTTG
64 ACCATCGGCACCTAGGCCCTTG
* * * *
82367723 GAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACGTTGGAT-GTGCGGGTGCCTCG
1 G-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
82367783 AGCAGCAGGG
Statistics
Matches: 758, Mismatches: 128, Indels: 41
0.82 0.14 0.04
Matches are distributed among these distances:
83 27 0.04
84 239 0.32
85 429 0.57
86 63 0.08
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (85 bp):
GTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
CATCGGCACCTAGGCCCTTG
Found at i:82367812 original size:43 final size:43
Alignment explanation
Indices: 82367514--82367818 Score: 275
Period size: 43 Copynumber: 7.2 Consensus size: 43
82367504 GGCCTTGATC
* * * *
82367514 GTGCGAGAACCTCGGGCACCATTGGCACCTTGGT-GCTTGGAT
1 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGGCTTGGAT
* * * * * **
82367556 ATGCGGGAGCCTCGAACACCATCGGCAACCTCGG-CCCTTGG-T
1 GTGCGGGAGCCTCGAGCAGCATTGGC-ACCTTGGTGGCTTGGAT
* * * *
82367598 CGTGCGGGAGCCTC-AGGAACCATCGGCACCTTGGTGCCTTGGAT
1 -GTGCGGGAGCCTCGA-GCAGCATTGGCACCTTGGTGGCTTGGAT
*
82367642 GTGCGGGAGCCTCGAGCAGTATTGGCACCTTGGT-GCTTGGAT
1 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGGCTTGGAT
82367684 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGT-GCTTGGAT
1 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGGCTTGGAT
* * * **
82367726 GTGCGGGAGCCTCG-GACACCATCGGCAACCTAGGACG-TTGGAT
1 GTGCGGGAGCCTCGAG-CAGCATTGGC-ACCTTGGTGGCTTGGAT
* ** * *
82367769 GTGCGGGTGCCTCGAGCAGCAGGGGCACCCTGGTGGCTCGGAT
1 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGGCTTGGAT
82367812 GTGCGGG
1 GTGCGGG
82367819 CTAAAGAAAA
Statistics
Matches: 219, Mismatches: 32, Indels: 23
0.80 0.12 0.08
Matches are distributed among these distances:
41 1 0.00
42 104 0.47
43 110 0.50
44 4 0.02
ACGTcount: A:0.16, C:0.27, G:0.37, T:0.20
Consensus pattern (43 bp):
GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGGCTTGGAT
Found at i:82374566 original size:24 final size:24
Alignment explanation
Indices: 82374527--82374580 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
82374517 CCGGTTAGGT
* * *
82374527 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGATGATCCGACGAGCCA
*
82374551 TCCCGGCGATGATCCGGCGAGCCA
1 TCCCGGCGATGATCCGACGAGCCA
82374575 TCCCGG
1 TCCCGG
82374581 GATACACAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.13, C:0.41, G:0.31, T:0.15
Consensus pattern (24 bp):
TCCCGGCGATGATCCGACGAGCCA
Found at i:82374709 original size:58 final size:58
Alignment explanation
Indices: 82374613--82374733 Score: 183
Period size: 58 Copynumber: 2.1 Consensus size: 58
82374603 TCCCTCCCTA
82374613 ATCCCAAAAGGTAGAATTCGGATACCGTACATGTTCGGTACCC-AATAATGAATGAATC
1 ATCCCAAAAGGTAGAATTCGGATACCGTACATGTTCGGTACCCGAA-AATGAATGAATC
* *
82374671 ATCCC-AAAGGTAGGATTCGGATACCGTTGCATGTTCGGTACCCGAAAATGAATGAATC
1 ATCCCAAAAGGTAGAATTCGGATACCG-TACATGTTCGGTACCCGAAAATGAATGAATC
*
82374729 GTCCC
1 ATCCC
82374734 TGTCCCTCCC
Statistics
Matches: 58, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
57 20 0.34
58 36 0.62
59 2 0.03
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.24
Consensus pattern (58 bp):
ATCCCAAAAGGTAGAATTCGGATACCGTACATGTTCGGTACCCGAAAATGAATGAATC
Found at i:82381426 original size:27 final size:27
Alignment explanation
Indices: 82381396--82381573 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
82381386 ATATTGAGTC
* * * *
82381396 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
82381423 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
82381450 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
82381478 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
82381505 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
82381532 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
82381559 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
82381574 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:82381535 original size:82 final size:81
Alignment explanation
Indices: 82381417--82381572 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
82381407 TGCTATATAA
* *
82381417 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
82381482 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
82381499 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
82381563 CACTTAGTGC
65 CACTTAGTGC
82381573 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:82393108 original size:58 final size:59
Alignment explanation
Indices: 82393017--82393136 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 59
82393007 CCCTCCCCAA
* *
82393017 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
* *
82393076 TCCC-AAAGGTACG-ATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTA-GAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
82393134 TCC
1 TCC
82393137 TTGTCCCTCC
Statistics
Matches: 56, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
58 51 0.91
59 5 0.09
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
Found at i:82393581 original size:24 final size:24
Alignment explanation
Indices: 82393533--82393608 Score: 91
Period size: 24 Copynumber: 3.2 Consensus size: 24
82393523 CCGGTTAGGT
*
82393533 TCCCGGCGGTGCTCC-AGTGATCCA
1 TCCCGGCGGTGCTCCGA-TGAGCCA
*
82393557 TCCCGGCGGTGCTCCGACGAGCCA
1 TCCCGGCGGTGCTCCGATGAGCCA
* * *
82393581 TCTCAGCAGTGCTCCGATGAGCCA
1 TCCCGGCGGTGCTCCGATGAGCCA
82393605 TCCC
1 TCCC
82393609 AGAATATCGA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
24 43 0.98
25 1 0.02
ACGTcount: A:0.14, C:0.39, G:0.28, T:0.18
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGATGAGCCA
Found at i:82393942 original size:85 final size:85
Alignment explanation
Indices: 82393797--82394643 Score: 937
Period size: 85 Copynumber: 10.0 Consensus size: 85
82393787 CACATTGCTG
* * * * * * * *
82393797 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGACGTTTGTCGTGCGGGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * **
82393862 GCACCACCGGCACCTTGGTG
66 GCACCATCGGCACCTAGGCC
* * * *
82393882 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGGGCGAGAGCCTC-
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
**
82393945 GATACCATCGGCAACCTAGGCC
65 GGCACCATCGGC-ACCTAGGCC
* * *
82393967 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGG-AACCTAGGCCATTGGTCGTGCGAGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
82394031 GCACCATCGGAACCTAGGCC
66 GCACCATCGGCACCTAGGCC
* * *
82394051 CCTGGTCGTGCAGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
82394116 CCACCATCGGCACCTAGGCC
66 GCACCATCGGCACCTAGGCC
* ** * * * **
82394136 CCTGGTCGTGTAGGAGCTTCGGCCTCCATCGGCAACCTAGGCCCTTGGTCGTGCTAGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
82394201 GCACCATCGGCACCTAGGCC
66 GCACCATCGGCACCTAGGCC
* ** *
82394221 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGTGGGAGCCTCG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
82394284 GGCACCATCGGCAACCTAGGCC
65 GGCACCATCGGC-ACCTAGGCC
* * *
82394306 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGG-TACCTAGGCCTTTGGAT-GTGCGGGAGCCTCG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
82394369 GGCACCATCGGCAACCTAGGCC
65 GGCACCATCGGC-ACCTAGGCC
* * * *
82394391 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGATCGTGCGAGAACCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* **
82394455 GCACCATCGGCACCTTGGTG
66 GCACCATCGGCACCTAGGCC
** *
82394475 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGACAACCTCA-GCCCTTGGTCGTGCGGGAGCCTC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCT-AGGCCCTTGGTCGTGCGGGAGCCTC
* * *
82394538 GGGCACCATCGGTACCTTGGTGC
64 GGGCACCATCGGCACCTAGG-CC
* * * * * **
82394561 CTTGGAT-GTGCAGGAGCCTCGAGCAACATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC
*
82394623 GGACACCATCGGCAACCTAGG
64 GGGCACCATCGGC-ACCTAGG
82394644 ACGTTAGATG
Statistics
Matches: 659, Mismatches: 86, Indels: 33
0.85 0.11 0.04
Matches are distributed among these distances:
84 148 0.22
85 469 0.71
86 42 0.06
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (85 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
GCACCATCGGCACCTAGGCC
Found at i:82393984 original size:127 final size:128
Alignment explanation
Indices: 82393822--82394643 Score: 931
Period size: 127 Copynumber: 6.5 Consensus size: 128
82393812 GCCTTGGACG
* * * * * **
82393822 CCATCGGCAACCTAGGACGTTTGTCGTGCGGGAGCCTCGGGCACCACCGGCACCTTGGTGCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* * **
82393887 AT-GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGGGCGAGAGCCTC-GATA
66 -TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCA
* * *
82393949 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGAACCTAGGCCATTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* *
82394014 TCGTGCGAGAGCCTCGGGCACCATCGG-AACCTAGGCCCCTGGTCGTGC-AGGAGCCTCGGCCA
66 TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGA-GAGCCTCGGGCA
* *
82394076 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
** * * * * *
82394141 TCGTGTAGGAGCTTCGGCCTCCATCGGCAACCTAGGCCCTTGGTCGTGCTAGAGCCTCGGGCA
66 TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCA
* **
82394204 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* *
82394268 AT-GTGTGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCA
66 -TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCA
* * *
82394331 CCATCGG-TACCTAGGCCTTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCT
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTT
* * *
82394394 GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGATCGTGCGAGAACCTCGGGCA
64 GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCA
* ** ** *
82394458 CCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGACAACCTCA-GCCCT
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCT-AGGCCCT
* * * *
82394520 TGGTCGTGCGGGAGCCTCGGGCACCATCGG-TACCTTGGTGCCTTGGAT-GTGC-AGGAGCCTCG
63 TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCCTGG-TCGTGCGA-GAGCCTCG
*
82394582 AGCA
125 GGCA
* * * ** *
82394586 ACATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGG
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGG
82394644 ACGTTAGATG
Statistics
Matches: 612, Mismatches: 66, Indels: 33
0.86 0.09 0.05
Matches are distributed among these distances:
125 1 0.00
126 34 0.06
127 419 0.68
128 156 0.25
129 2 0.00
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (128 bp):
CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCA
Found at i:82394189 original size:212 final size:210
Alignment explanation
Indices: 82393847--82394643 Score: 975
Period size: 212 Copynumber: 3.8 Consensus size: 210
82393837 GACGTTTGTC
* * **
82393847 GTGCGGGAGCCTCGGGCACCACCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCA
* *
82393910 TCGGTAACCTAGGCCCCTGGTCGGGC-GAGAGCCTC-GATACCATCGGCAACCTAGGCCCTTGGT
65 TCGGT-ACCTAGGCCCCTGGTCGTGCAG-GAGCCTCGGCT-CCATCGGCAACCTAGGCCCTTGGT
82393973 CGTGCGAGAGCCTCGGGCACCATCGGAACCTAGGCCATTGGTCGTGCGAGAGCCTCGGGCACCAT
127 CGTGCGAGAGCCTCGGGCACCATCGGAACCTAGGCC-TTGGTCGTGCGAGAGCCTCGGGCACCAT
* * ** *
82394038 CGGAACCTAGGCCCCTGG-T
191 CGGCACCTTGGTGCTTGGAT
* * *
82394057 CGTGCAGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCA
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * *
82394122 TCGGCACCTAGGCCCCTGGTCGTGTAGGAGCTTCGGCCTCCATCGGCAACCTAGGCCCTTGGTCG
65 TCGGTACCTAGGCCCCTGGTCGTGCAGGAGCCTCGG-CTCCATCGGCAACCTAGGCCCTTGGTCG
* * *
82394187 TGCTAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
129 TGCGAGAGCCTCGGGCACCATCGGAACCTAGG-CCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
82394252 GCACCTTGGTGCTTGGAT
193 GCACCTTGGTGCTTGGAT
* *
82394270 GTGTGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
** * * *
82394335 CGGTACCTAGGCCTTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCG
66 CGGTACCTAGGCCCCTGG-TCGTGCAGGAGCCTC-GGCTCCATCGGCAACCTAGGCCCTTGGTCG
* * *
82394399 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCTTGATCGTGCGAGAACCTCGGGCACCATCG
129 TGCGAGAGCCTCGGGCACCATCGG-AACCTAGGCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
82394464 GCACCTTGGTGCTTGGAT
193 GCACCTTGGTGCTTGGAT
** *
82394482 GTGCGGGAGCCTCGAACACCATCGACAACCTCA-GCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCT-AGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * * ** * * **
82394546 TCGGTACCTTGGTGCCTTGGAT-GTGCAGGAGCCTCGAGCAACATTGGC-ACCTTGGTGCTTGGA
65 TCGGTACCTAGG-CCCCTGG-TCGTGCAGGAGCCTCG-GCTCCATCGGCAACCTAGGCCCTTGG-
* *
82394609 T-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGG
126 TCGTGCGAGAGCCTCGGGCACCATCGG-AACCTAGG
82394644 ACGTTAGATG
Statistics
Matches: 517, Mismatches: 55, Indels: 27
0.86 0.09 0.05
Matches are distributed among these distances:
211 48 0.09
212 425 0.82
213 44 0.09
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.18
Consensus pattern (210 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
CGGTACCTAGGCCCCTGGTCGTGCAGGAGCCTCGGCTCCATCGGCAACCTAGGCCCTTGGTCGTG
CGAGAGCCTCGGGCACCATCGGAACCTAGGCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCA
CCTTGGTGCTTGGAT
Found at i:82401490 original size:11 final size:11
Alignment explanation
Indices: 82401471--82401504 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
82401461 TATCAAGCAT
*
82401471 TTCCTCAACCA
1 TTCCACAACCA
82401482 TTCCACAACCA
1 TTCCACAACCA
82401493 TTCCACAACCA
1 TTCCACAACCA
82401504 T
1 T
82401505 ACCATAAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.32, C:0.44, G:0.00, T:0.24
Consensus pattern (11 bp):
TTCCACAACCA
Found at i:82402147 original size:93 final size:93
Alignment explanation
Indices: 82402020--82402191 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
82402010 CGCCCATAAG
* *
82402020 CGAACTCAGACTCAACTCAATGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
82402085 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
82402113 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
82402178 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
82402192 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:82402188 original size:46 final size:46
Alignment explanation
Indices: 82402013--82402188 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
82402003 TGTAACTCGC
* * * *
82402013 CCATAAGCGAACTCAGACTCAACTCAATGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
82402059 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
82402109 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
82402152 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
82402189 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:82402207 original size:46 final size:44
Alignment explanation
Indices: 82402064--82402207 Score: 141
Period size: 46 Copynumber: 3.1 Consensus size: 44
82402054 CGCATCCATA
82402064 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
82402111 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
82402157 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
82402203 AGTGA
1 AGTGA
82402208 CATGTCACTT
Statistics
Matches: 80, Mismatches: 9, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 33 0.41
47 31 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:82409713 original size:46 final size:44
Alignment explanation
Indices: 82409574--82409713 Score: 115
Period size: 46 Copynumber: 3.0 Consensus size: 44
82409564 CCCATAAGCA
*
82409574 AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCA-CG
1 AACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AGTG
* * * * *
82409621 AACTTGGACTCAACTCAACGAGTTCGAACATTCGCATCCAT-AAGTG
1 AACTCGGACTCAACTCAACGAGTTCG--GATGC-CAACCATCTAGTG
82409667 AACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGTG
1 AACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAGTG
82409713 A
1 A
82409714 CATGTCACTT
Statistics
Matches: 74, Mismatches: 12, Indels: 15
0.73 0.12 0.15
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 31 0.42
47 28 0.38
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.23
Consensus pattern (44 bp):
AACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAGTG
Found at i:82418795 original size:58 final size:58
Alignment explanation
Indices: 82418712--82418824 Score: 174
Period size: 58 Copynumber: 1.9 Consensus size: 58
82418702 AATCCCAAAA
* *
82418712 GGTAGAATTCGGATACCGTTACATGT-TCGGTACCTAATAATGAATGAATCGTCCCAAT
1 GGTAGAATTCGGATACCGTTACATGTCT-GGTACCCAACAATGAATGAATCGTCCCAAT
* *
82418770 GGTAGGATTCGGATACCGTTGCATGTCTGGTACCCAACAATGAATGAATCGTCCC
1 GGTAGAATTCGGATACCGTTACATGTCTGGTACCCAACAATGAATGAATCGTCCC
82418825 TGTCCCTCCC
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
58 49 0.98
59 1 0.02
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.27
Consensus pattern (58 bp):
GGTAGAATTCGGATACCGTTACATGTCTGGTACCCAACAATGAATGAATCGTCCCAAT
Found at i:82424830 original size:24 final size:24
Alignment explanation
Indices: 82424802--82424855 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
82424792 CCGGTTAGGT
* *
82424802 TCCCGGCGGTGCTCCGGTGATCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
82424826 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
82424850 TCCCGG
1 TCCCGG
82424856 AATATCGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.07, C:0.41, G:0.35, T:0.17
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:82425135 original size:42 final size:42
Alignment explanation
Indices: 82425042--82426097 Score: 1081
Period size: 42 Copynumber: 24.9 Consensus size: 42
82425032 CACATTGCTG
* * * * * *
82425042 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGAC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * *
82425085 GTTTGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGCCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * * * **
82425127 CTTGGTCGTGTGGGAGCCTCGGGCACCACCGGTACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
82425169 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * * ** *
82425212 CCTGGTCGCGTGGGAACCTC-GATACCATCTGCCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATC-GGCACCTAGGCC
* *
82425254 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
*** *
82425296 CTTGGTCGTGCAAAAGCCTCGGGCACCATCGGAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * * *
82425338 CCTGGTCGTGCGGGAGCCTCGGCCACCATCGACAACCAAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
82425381 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* ** * *
82425423 CCTGGTCGTGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
82425466 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * * **
82425508 CCTGGTCTTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
*
82425550 CTTGGAT-GTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
82425593 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * *
82425636 CTTGGTCGTGCGAGAGCCTTGGG-ACAATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
82425677 CTTGGTCGTGCGGGAGCCTCGGCCACAATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
82425719 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * *
82425762 CCTGGTCGTGCAGGAGCCTCGGGCACCATCGGCAAACTAGG-C
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * * *
82425804 CTTGATAGTGCGAGAACCTCGGGCACCATCGACAACCTAGG-C
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* ** * * **
82425846 CTTGATCGTGCGATAACCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
** *
82425888 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
82425931 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CC
* * * * **
82425974 CTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * * * * **
82426016 GTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
82426058 CTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAACCTAG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAG
82426098 AACGTTCGAT
Statistics
Matches: 864, Mismatches: 128, Indels: 42
0.84 0.12 0.04
Matches are distributed among these distances:
41 35 0.04
42 508 0.59
43 320 0.37
44 1 0.00
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (42 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
Found at i:82425264 original size:169 final size:170
Alignment explanation
Indices: 82425042--82426097 Score: 1202
Period size: 169 Copynumber: 6.2 Consensus size: 170
82425032 CACATTGCTG
* * * * * ** *
82425042 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGACGTTTGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
* * * * * * **
82425107 GCACCATCGGC-ACCTAGCCCCTTGGTCGTGTGGGAGCCTCGGGCACCACCGGTACCTTGGTGCT
66 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCT
82425171 TGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
131 TGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * * * * * * *
82425212 CCTGG-TCGCGTGGGAACCTC-GATACCATCTGCCACCTAGGCCCTTGGTCGTGCGAGAGCCTCG
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* * *
82425275 GGCACCATCGG-AACCTAGGCCCTTGGTCGTGCAAAAGCCTCGGGCACCATCGGAACCTAGGCCC
65 GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCC
* * * *
82425339 CTGGTCGTGCGGGAGCCTCGGCCACCATCGACAACCAAGGCC
130 TTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* ** *
82425381 CTTGG-TCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGCCCCTGGTCGTGTAGGAGCTTCG
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
*
82425444 GCCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCC
65 GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCC
* * * **
82425509 CTGGTCTTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG
130 TTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
82425550 CTTGGATGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
* *
82425615 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTTGGG-ACAATCGGCACCTAGGCCCT
66 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCT
* *
82425679 TGGTCGTGCGGGAGCCTCGGCCACAATCGGCACCTAGGCC
131 TGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
82425719 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCAGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
* * * * *
82425784 GCACCATCGGCAAACTAGG-CCTTGATAGTGCGAGAACCTCGGGCACCATCGACAACCTAGG-CC
66 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCC
* ** * * **
82425847 TTGATCGTGCGATAACCTCGGGCACCATCGGCACCTTGGTG
130 TTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * *
82425888 CTTGGATGTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
* * * * * * * **
82425953 GCACCATCGGC-ACCTTGGTGCCTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTG
66 GCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCC
* * * * * **
82426016 GTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTG
129 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
*
82426058 CTTGGATGTGCGGGAGCCTCAGACACCATCGGCAACCTAG
1 CTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAG
82426098 AACGTTCGAT
Statistics
Matches: 760, Mismatches: 112, Indels: 28
0.84 0.12 0.03
Matches are distributed among these distances:
168 26 0.03
169 460 0.61
170 272 0.36
171 2 0.00
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (170 bp):
CTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCT
TGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
Found at i:82425271 original size:127 final size:128
Alignment explanation
Indices: 82425042--82426097 Score: 1081
Period size: 127 Copynumber: 8.3 Consensus size: 128
82425032 CACATTGCTG
* * * * * * *
82425042 CTTGGA-CGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGACGTTTGTCGTGCGGGAGCCTCG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* * * * * * **
82425106 GGCACCATCGGCACCTAGCCCCTTGGTCGTGTGGGAGCCTCGGGCACCACCGGTACCTTGGTG
66 GGCACCATCGCCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * * *
82425169 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGCGTGGGAACCTC-
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
** * *
82425232 GATACCATCTGCCACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGAACCTAGGCC
66 GGCACCATC-GCCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
*** *
82425296 CTTGG-TCGTGCAAAAGCCTCGGGCACCATCGG-AACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* * * *
82425359 GCCACCATCGACAACCAAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
66 GGCACCATCG-CCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* ** * * *
82425423 CCTGG-TCGTGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* * * * **
82425487 GGCACCATCGGCACCTAGGCCCCTGGTCTTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG
66 GGCACCATCGCCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
82425550 CTTGGAT-GTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* * * *
82425614 GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTTGGG-ACAATCGGCACCTAGGCC
66 GGCACCATC-GCCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
82425677 CTTGG-TCGTGCGGGAGCCTCGGCCACAATCGGC-ACCTAGGCCCTTGGAT-GTGCGGGAGCCTC
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC
* * * *
82425739 GGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCAGGAGCCTCGGGCACCATCGGCAAACTAGG-
65 GGGCACCATC-GCCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGC
82425803 C
128 C
* * * * * ** *
82425804 CTT-GATAGTGCGAGAACCTCGGGCACCATCGACAACCTAGG-CCTTGATCGTGCGATAACCTCG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* * ** ** *
82425867 GGCACCATCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCC
66 GGCACCATCGCCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
82425931 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTTGGAT-GTGCGGGAGCCT
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCT
* * * * * *** * * * * *
82425993 CGAGCAGCATTGGCACCTTGGTGGTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGT
64 CGGGCACCATCGCCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGC
*
82426057 G
128 C
* *
82426058 CTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAACCTAG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAG
82426098 AACGTTCGAT
Statistics
Matches: 782, Mismatches: 124, Indels: 45
0.82 0.13 0.05
Matches are distributed among these distances:
126 153 0.20
127 477 0.61
128 151 0.19
129 1 0.00
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (128 bp):
CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
GGCACCATCGCCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
Found at i:82426114 original size:85 final size:85
Alignment explanation
Indices: 82425026--82426097 Score: 962
Period size: 85 Copynumber: 12.7 Consensus size: 85
82425016 GGTGCAAGAG
* * * * * * * * *
82425026 CATCGGCACATTGCTGCTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGACGTTTGT
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT
82425091 CGTGCGGGAGCCTCGGGCAC
66 CGTGCGGGAGCCTCGGGCAC
* *** * * * * * **
82425111 CATCGGCACCTAGCCCCTTGG-TCGTGTGGGAGCCTCGGGCACCACCGG-TACCTTGGTGCTTGG
1 CATCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG
82425174 AT-GTGCGGGAGCCTCGGGCAC
65 -TCGTGCGGGAGCCTCGGGCAC
* ** * * * * * * *
82425195 CATCGGCAACCTAGGCCCCTGG-TCGCGTGGGAACCTC-GATACCATCTGCCACCTAGGCCCTTG
1 CATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTG
*
82425258 GTCGTGCGAGAGCCTCGGGCAC
64 GTCGTGCGGGAGCCTCGGGCAC
* * ** *** * *
82425280 CATCGGAACCTAGGCCCTTGG-TCGTGCAAAAGCCTCGGGCACCATCGG-AACCTAGGCCCCTGG
1 CATCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG
*
82425343 TCGTGCGGGAGCCTCGGCCAC
65 TCGTGCGGGAGCCTCGGGCAC
* ** ** * *
82425364 CATCGACAACCAAGGCCCTTGG-TCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGCCCCTG
1 CATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTG
** * *
82425427 GTCGTGTAGGAGCTTCGGCCAC
64 GTCGTGCGGGAGCCTCGGGCAC
* ** * * *
82425449 CATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCCCTG
1 CATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTG
*
82425512 GTCTTGCGGGAGCCTCGGGCAC
64 GTCGTGCGGGAGCCTCGGGCAC
* * *
82425534 CATCGGCACCTTGGTGCTTGGATGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGT
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT
82425599 CGTGCGGGAGCCTCGGGCAC
66 CGTGCGGGAGCCTCGGGCAC
* ** * *
82425619 CATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTTGGGACA--ATCGGC-ACCTAGGCCCTT
1 CATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCC-TCGGACACCATCGGCAACCTAGGCCCTT
*
82425680 GGTCGTGCGGGAGCCTCGGCCAC
63 GGTCGTGCGGGAGCCTCGGGCAC
* * ** * *
82425703 AATCGGCACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGT
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT
*
82425768 CGTGCAGGAGCCTCGGGCAC
66 CGTGCGGGAGCCTCGGGCAC
* * * * * * *
82425788 CATCGGCAAACTAGG-CCTT-GATAGTGCGAGAACCTCGGGCACCATCGACAACCTAGG-CCTTG
1 CATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTG
* ** *
82425850 ATCGTGCGATAACCTCGGGCAC
64 GTCGTGCGGGAGCCTCGGGCAC
* *
82425872 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGGT
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT
82425937 CGTGCGGGAGCCTCGGGCAC
66 CGTGCGGGAGCCTCGGGCAC
* * * ***
82425957 CATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCCTC-GAGCAGCATTGGC-ACCTTGGTGGTTG
1 CATCGGCACCTTGGTG-CTTGGATGTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTG
* *
82426020 GAT-GTGCGGGAGCCTCGAGCAG
64 G-TCGTGCGGGAGCCTCGGGCAC
* *
82426042 CATTGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAACCTAG
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAG
82426098 AACGTTCGAT
Statistics
Matches: 841, Mismatches: 119, Indels: 54
0.83 0.12 0.05
Matches are distributed among these distances:
82 5 0.01
83 29 0.03
84 275 0.33
85 470 0.56
86 57 0.07
87 5 0.01
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (85 bp):
CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT
CGTGCGGGAGCCTCGGGCAC
Found at i:82432391 original size:58 final size:59
Alignment explanation
Indices: 82432294--82432414 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 59
82432284 CCCTCCCCAA
* * * *
82432294 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACAGGTCCGGTACCCAACAATGAATAAATCG
* *
82432353 TCCC-AAAGGTAGGATTCGGATACCGTTGCAGGTCCGGTACCCAACAATGAATAAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACAGGTCCGGTACCCAACAATGAATAAATCG
82432411 TCCC
1 TCCC
82432415 TGTCCCTCCC
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 52 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.23
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGATACCGTTACAGGTCCGGTACCCAACAATGAATAAATCG
Found at i:82432836 original size:24 final size:24
Alignment explanation
Indices: 82432809--82432882 Score: 121
Period size: 24 Copynumber: 3.1 Consensus size: 24
82432799 CCGGTTAGGT
*
82432809 TCCCGGCGGTGCTCCGGCGATCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
*
82432833 TCCCGGTGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
*
82432857 TCCCGGCGGTGCTCCGGTGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
82432881 TC
1 TC
82432883 TCGGAATATA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.08, C:0.39, G:0.35, T:0.18
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:82433165 original size:42 final size:42
Alignment explanation
Indices: 82433097--82433700 Score: 556
Period size: 42 Copynumber: 14.3 Consensus size: 42
82433087 GCCTTGGACG
* * *
82433097 CCATCGGCAACCTAGGACGTTTGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
82433140 CCACCGGCACCTAGCCCCTTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * ** *
82433182 CCACCGGTACCTTGGTGCTTGGAT-GTGCGAGAGCCTCGGGCA
1 CCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
** * *
82433224 CCATCGAAACCTAGGCCCTTGGTCATGCGAGAGCCTCGGGCA
1 CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
82433266 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-A
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
82433308 CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCA
1 CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
82433350 CCATCGGCACCTAGGCCCTTGGAT-GTGCGGAAGCCTCGGGCA
1 CCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * *
82433392 CCATCGGCAATCTAGGCCCCTGGTCGTGCGGGAGCTTCGGGCA
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
82433435 CCATCGGTAACCTAGG-CCTTGATCGTGCGAGAACCTCGGGCA
1 CCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * * *
82433477 ACATCAGCAACCTAGG-CCTAGATCGTGCGAGAACCTCGAGCA
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** ** **
82433519 CCATCGGTACCTTGGTGCTTGGAAGTGCGGGAGCCTCGAACA
1 CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
82433561 CCATCGGTAACCTCGGCCCTTGGTCGTTCGGGAGCCTCGGGCA
1 CCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
82433604 CCATCGGAACCTTGGTGCCTTGGAT-GTGCGGGAGCCTCGAGCA
1 CCATCGGCACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * * ** * *
82433647 GCATTGGCACCTTGGTGCTGGGAT-GTGCGGGAGCCTCGAGCA
1 CCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* *
82433689 GCATTGGCACCT
1 CCATCGGCACCT
82433701 TGAACCCGAG
Statistics
Matches: 476, Mismatches: 72, Indels: 27
0.83 0.13 0.05
Matches are distributed among these distances:
41 37 0.08
42 290 0.61
43 148 0.31
44 1 0.00
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.19
Consensus pattern (42 bp):
CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
Found at i:82433295 original size:169 final size:167
Alignment explanation
Indices: 82433097--82433658 Score: 655
Period size: 169 Copynumber: 3.3 Consensus size: 167
82433087 GCCTTGGACG
* * * *
82433097 CCATCGGCAACCTAGGACGTTTGTCGTGCGGGAGCCTCGGGCACCACCGGCACCTAGCCCCTTGG
1 CCATCGGCAACCTAGG-CCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAG-CCCTTGG
*
82433162 TCGTGCGGGAGCCTCGGGCACCACCGGTACCTTGGTGCTTGGATGTGCGAGAGCCTCGGGCACCA
64 TCGTGCGGGAGCCTCGGGCACCATCGGTACCTTGGTGCTTGGATGTGCG-GAGCCTCGGGCACCA
* *
82433227 TC-GAAACCTAGGCCCTTGGTCATGCGAGAGCCTCGGGCA
128 TCGGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
82433266 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCCCTTGG
1 CCATCGGCAACCTAGG-CCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTA-GCCCTTGG
* * * **
82433330 TCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCTTGGATGTGCGGAAGCCTCGGGCACCA
64 TCGTGCGGGAGCCTCGGGCACCATCGGTACCTTGGTGCTTGGATGTGCGG-AGCCTCGGGCACCA
* * * *
82433395 TCGGCAATCTAGGCCCCTGGTCGTGCGGGAGCTTCGGGCA
128 TCGGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * * * *
82433435 CCATCGGTAACCTAGGCCTTGATCGTGCGAGAACCTCGGGCAACATCAGCAACCTAGGCCTAGAT
1 CCATCGGCAACCTAGGCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGCCCTTGGT
* * * * **
82433500 CGTGCGAGAACCTCGAGCACCATCGGTACCTTGGTGCTTGGAAGTGCGGGAGCCTCGAACACCAT
65 CGTGCGGGAGCCTCGGGCACCATCGGTACCTTGGTGCTTGGATGTGC-GGAGCCTCGGGCACCAT
* * *
82433565 CGGTAACCTCGGCCCTTGGTCGTTCGGGAGCCTCGGGCA
129 CGGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * *
82433604 CCATCGG-AACCTTGGTGCCTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCT
1 CCATCGGCAACC-TAG-GCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCACCT
82433659 TGGTGCTGGG
Statistics
Matches: 334, Mismatches: 50, Indels: 18
0.83 0.12 0.04
Matches are distributed among these distances:
167 1 0.00
168 105 0.31
169 194 0.58
170 33 0.10
171 1 0.00
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.18
Consensus pattern (167 bp):
CCATCGGCAACCTAGGCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGCCCTTGGTC
GTGCGGGAGCCTCGGGCACCATCGGTACCTTGGTGCTTGGATGTGCGGAGCCTCGGGCACCATCG
GAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
Found at i:82439499 original size:37 final size:37
Alignment explanation
Indices: 82439449--82439527 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
82439439 TTATTACGAA
* * *
82439449 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
82439486 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
82439523 GTCTT
1 GTCTT
82439528 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:82439722 original size:49 final size:49
Alignment explanation
Indices: 82439645--82439802 Score: 284
Period size: 49 Copynumber: 3.2 Consensus size: 49
82439635 GCCCTTCGGG
82439645 ACTTGTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
82439695 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
*
82439744 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
82439791 ACTTTCACATTC
1 ACTTTCACATTC
82439803 TCAAAGTAAG
Statistics
Matches: 107, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
47 20 0.19
49 83 0.78
50 4 0.04
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
Found at i:82440121 original size:24 final size:23
Alignment explanation
Indices: 82440073--82440130 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
82440063 TAATCAAACA
82440073 TTATTATATATATATCATATCATT
1 TTATTAT-TATATATCATATCATT
*
82440097 TTATTATTAT-TATCATTATTTATT
1 TTATTATTATATATCA-TA-TCATT
82440121 TTATT-TTATA
1 TTATTATTATA
82440131 CTTTTCAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 5 0.17
23 9 0.30
24 16 0.53
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (23 bp):
TTATTATTATATATCATATCATT
Found at i:82444175 original size:96 final size:96
Alignment explanation
Indices: 82444009--82444202 Score: 300
Period size: 96 Copynumber: 2.0 Consensus size: 96
82443999 GTGTCCGAGG
* * * *
82444009 AAGTCTGTTATCGATGGGAATGATGGAGCAAATACGGAGCCCAAGAAGCTTGGTTCGAGTAAGGG
1 AAGTCTGTCATCGATGGGAACGATGGAGCAAACAAGGAGCCCAAGAAGCTTGGTTCGAGTAAGGG
82444074 AAAAGCCGAAGCCAAGAGGGCAAAGAAGAGC
66 AAAAGCCGAAGCCAAGAGGGCAAAGAAGAGC
*
82444105 AAGTCTGTCATCGGA-GGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGTAAGG
1 AAGTCTGTCATC-GATGGGAACGATGGAGCAAACAAGGAGCCCAAGAAGCTTGGTTCGAGTAAGG
* * *
82444169 GTAAAGCCGAAGCCAAGAGGGCTAAGAGGAGC
65 GAAAAGCCGAAGCCAAGAGGGCAAAGAAGAGC
82444201 AA
1 AA
82444203 AAAGAAGCGA
Statistics
Matches: 89, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
96 87 0.98
97 2 0.02
ACGTcount: A:0.36, C:0.16, G:0.35, T:0.13
Consensus pattern (96 bp):
AAGTCTGTCATCGATGGGAACGATGGAGCAAACAAGGAGCCCAAGAAGCTTGGTTCGAGTAAGGG
AAAAGCCGAAGCCAAGAGGGCAAAGAAGAGC
Found at i:82448397 original size:177 final size:175
Alignment explanation
Indices: 82448103--82448463 Score: 503
Period size: 177 Copynumber: 2.0 Consensus size: 175
82448093 GTAAGGAGTT
* **
82448103 AGTTAAACACTTGGCCGTGCCGCCCCCGGGAAACATGGCACAACGGGGGCCGTGGTGGTGCGGGT
1 AGTTAAACACTTGGCCGTGCCGCCCCCGGGAAACATCGCACAACGGGGGCCGTGGTGGTGCAAGT
* * *
82448168 GCGAGCTCCCAAGTGTTGGCGGCCCGGACACTTGTCCAATTTTCTGCCGTGCCATGCCATGCC-A
66 GCGAGCTCCCAACTGTTGGCGGCCCGGACACTTGTCCAATTATCTACCGTGCCAT--CATGCCAA
*
82448232 -TGCCAT-ACTTCTTGTATTTGTTTTGGGCCAACAGAAAAAATTTCTA
129 TTGCCATCACTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTT-TA
*
82448278 AGTTAAACACTTGGCCGTGCCGCCCCCTCGGGAAACATCGTACAACGGGGGCCGTGGTGGTGCAA
1 AGTTAAACACTTGGCCGTGCCG-CCCC-CGGGAAACATCGCACAACGGGGGCCGTGGTGGTGCAA
* *
82448343 GTGCGAGCTCCCAACTGTTGGCGGCCCGGGCACTTGTTCAATTATCTACCGTGCCATCATGCCAT
64 GTGCGAGCTCCCAACTGTTGGCGGCCCGGACACTTGTCCAATTATCTACCGTGCCATCATGCCA-
* ** *
82448408 ATTTCGTTCGGCTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTTTA
128 ATTGCCATC-ACTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTTTA
*
82448457 AATTAAA
1 AGTTAAA
82448464 AATACTAAGT
Statistics
Matches: 164, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
175 28 0.17
176 4 0.02
177 86 0.52
178 3 0.02
179 8 0.05
180 35 0.21
ACGTcount: A:0.21, C:0.27, G:0.26, T:0.26
Consensus pattern (175 bp):
AGTTAAACACTTGGCCGTGCCGCCCCCGGGAAACATCGCACAACGGGGGCCGTGGTGGTGCAAGT
GCGAGCTCCCAACTGTTGGCGGCCCGGACACTTGTCCAATTATCTACCGTGCCATCATGCCAATT
GCCATCACTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTTTA
Found at i:82448995 original size:58 final size:59
Alignment explanation
Indices: 82448898--82449018 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 59
82448888 CCCTCCCCAA
* * * *
82448898 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGAATACCGTTACATATCCGGTACCCAACAATGAATGAATCG
* *
82448957 TCCC-AAAGGTAGGATTCGAATACCGTTGCATATCCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGAATACCGTTACATATCCGGTACCCAACAATGAATGAATCG
82449015 TCCC
1 TCCC
82449019 TGTCCCTCCC
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 52 0.93
59 4 0.07
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGAATACCGTTACATATCCGGTACCCAACAATGAATGAATCG
Found at i:82449539 original size:15 final size:16
Alignment explanation
Indices: 82449521--82449553 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
82449511 CGTTTTACTT
*
82449521 TTCA-TTGGTTTTTTA
1 TTCATTTGGTTTTGTA
82449536 TTCATTTGGTTTTGTA
1 TTCATTTGGTTTTGTA
82449552 TT
1 TT
82449554 TGTGTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.12, C:0.06, G:0.15, T:0.67
Consensus pattern (16 bp):
TTCATTTGGTTTTGTA
Found at i:82454612 original size:24 final size:24
Alignment explanation
Indices: 82454576--82454698 Score: 174
Period size: 24 Copynumber: 5.1 Consensus size: 24
82454566 CCAGTTAGGT
* *
82454576 TCCCGGCGGTGCTCTGGCGATCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
* *
82454600 TCCCGGTGATGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
* *
82454624 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
* *
82454648 TCCCGGCGTTGCTCCGACGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
82454672 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
82454696 TCC
1 TCC
82454699 TGAATATCGA
Statistics
Matches: 87, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 87 1.00
ACGTcount: A:0.11, C:0.41, G:0.32, T:0.17
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:82454632 original size:48 final size:48
Alignment explanation
Indices: 82454576--82454698 Score: 192
Period size: 48 Copynumber: 2.6 Consensus size: 48
82454566 CCAGTTAGGT
* * *
82454576 TCCCGGCGGTGCTCTGGCGATCCATCCCGGTGATGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGATCCATCCCGGCGATGCTCCGACGAGCCA
* *
82454624 TCCCGGCGGTGCTCCGACGATCCATCCCGGCGTTGCTCCGACGAGCCA
1 TCCCGGCGGTGCTCCGGCGATCCATCCCGGCGATGCTCCGACGAGCCA
*
82454672 TCCCGGCGGTGCTCCGGCGAGCCATCC
1 TCCCGGCGGTGCTCCGGCGATCCATCC
82454699 TGAATATCGA
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 68 1.00
ACGTcount: A:0.11, C:0.41, G:0.32, T:0.17
Consensus pattern (48 bp):
TCCCGGCGGTGCTCCGGCGATCCATCCCGGCGATGCTCCGACGAGCCA
Done.