Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 254 of 290
Found at i:82454749 original size:13 final size:13
Alignment explanation
Indices: 82454731--82454755 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82454721 AAGTCGTCCC
82454731 GGTCCCTCCCCTA
1 GGTCCCTCCCCTA
82454744 GGTCCCTCCCCT
1 GGTCCCTCCCCT
82454756 TTTGAATCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.56, G:0.16, T:0.24
Consensus pattern (13 bp):
GGTCCCTCCCCTA
Found at i:82454980 original size:42 final size:42
Alignment explanation
Indices: 82454887--82455966 Score: 1072
Period size: 42 Copynumber: 25.5 Consensus size: 42
82454877 CACATTGCTG
* * * * * *
82454887 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGAC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * *
82454930 ATTTGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTAGCCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * * * **
82454972 CTTGGTCGTGCGGGAGCCTCGGGCACCACCTGCTCCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
82455014 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* ** ** *
82455057 CCTGGTCGCCCGGGAGCCTC-GATATCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * *
82455099 CTTGGTCGTTCGAGAGCCTCGGGCACCATCGGAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * *
82455141 CTTGGTCGTGCGAGATCCTCGGGCACCATCGGAACCTATGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTA-GGCC
* *
82455184 C-TGGTCGTGCGGGAGCCTCGGCCACCATTGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
82455226 CTTGGTCGTGCGGGAGCCTCGGCCACTATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* ** * *
82455268 CCTGGTCGTGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
82455311 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * **
82455353 TTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
82455395 CTTGGAT-GTACGGGAGCCTCAGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
**
82455438 CCGGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
82455481 CTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * * *
82455522 ATTGGTCGTGCAGGAGCCTCGGCCACCATCGGCATCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
82455564 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * *
82455607 CCTGGTCGTGTGGGAGCCTCGGGCACCATCGGTAACCTAGG-C
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCC
* * * *
82455649 CTTGATCGTGCGAGAACCTCGGGCACCATCGGTAACCTAGG-C
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCC
** * * **
82455691 CTTCATCGTGCGAGAAG-CTCGGGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCG-GGAGCCTCGGGCACCATCGGCACCTAGGCC
** *
82455733 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
82455776 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTACCTTGGCGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGC-C
* ** * * **
82455819 CTTGGAT-GTGCGGGAGCCTCGAGCAGTATTGGCACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
** * * * **
82455861 CTTGGAT-GTGCGGGAGCCTCGAACAGCATTGGCACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
82455903 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGAC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
82455946 GTTGGAT-GTGCGGGTGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCG
82455967 AGCAGCAGGG
Statistics
Matches: 881, Mismatches: 131, Indels: 50
0.83 0.12 0.05
Matches are distributed among these distances:
41 37 0.04
42 511 0.58
43 332 0.38
44 1 0.00
ACGTcount: A:0.15, C:0.32, G:0.33, T:0.19
Consensus pattern (42 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
Found at i:82455071 original size:127 final size:129
Alignment explanation
Indices: 82454887--82455966 Score: 1118
Period size: 127 Copynumber: 8.5 Consensus size: 129
82454877 CACATTGCTG
* * * * * * *
82454887 CTTGGA-CGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGACATTTGTCGTGCGGGAGCCTCG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* * * * * * *
82454951 AGCACCATCGGC-ACCTAGCCCCTTGGTCGTGCGGGAGCCTCGGGCACCACCTGCTCCTTGGTG
66 GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTC
* **
82455014 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGCCCGGGAGCCTC-
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
** * * * * *
82455077 GATATCATCGGCAACCTAGGCCCTTGGTCGTTCGAGAGCCTCGGGCACCATCGGAACCTAGGCC
66 GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTC
* *
82455141 CTTGG-TCGTGCGAGATCCTCGGGCACCATCGG-AACCTATGGCCC-TGGTCGTGCGGGAGCCTC
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTA-GGCCCTTGGTCGTGCGGGAGCCTC
* * * * *
82455203 GGCCACCATTGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACTATCGGCACCTAGGCC
65 GGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTC
* ** * * *
82455268 CCTGG-TCGTGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* * *
82455332 GGCACCATCGGC-ACCTAGGCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG
66 GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTC
* * **
82455395 CTTGGAT-GTACGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCCGGGTCGTGCGGGAGCCTCG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
*
82455459 GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGG-C
66 GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTC
* * *
82455521 CATTGG-TCGTGCAGGAGCCTCGGCCACCATCGGC-ATCTAGGCCCTTGGAT-GTGCGGGAGCCT
1 C-TTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCT
* * *
82455583 CGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGTGGGAGCCTCGGGCACCATCGGTAACCTAGG
64 CGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGG
82455648 -C
128 TC
* * * ** *
82455649 CTT-GATCGTGCGAGAACCTCGGGCACCATCGGTAACCTAGG-CCTTCATCGTGCGAGAAG-CTC
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG-GGAGCCTC
* ** ** *
82455711 GGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGG
65 GGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGG
*
82455774 CC
128 TC
* *
82455776 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG-TACCTTGGCGCCTTGGAT-GTGCGGGAGCCT
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC-CCTTGG-TCGTGCGGGAGCCT
* ** * * ** ** * * *
82455838 CGAGCAGTATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAACAGCATTGGCACCTTGG
64 CGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG
*
82455901 TG
128 TC
* * * *
82455903 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACGTTGGAT-GTGCGGGTGCCTC
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC
82455966 G
65 G
82455967 AGCAGCAGGG
Statistics
Matches: 807, Mismatches: 118, Indels: 56
0.82 0.12 0.06
Matches are distributed among these distances:
126 146 0.18
127 508 0.63
128 152 0.19
129 1 0.00
ACGTcount: A:0.15, C:0.32, G:0.33, T:0.19
Consensus pattern (129 bp):
CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTC
Found at i:82455092 original size:169 final size:168
Alignment explanation
Indices: 82454887--82455943 Score: 1191
Period size: 169 Copynumber: 6.2 Consensus size: 168
82454877 CACATTGCTG
* * * * * ** * *
82454887 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGACATTTGTCGTGCGGGAGCCTCGA
1 CTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
* * * * * * *
82454952 GCACCATCGGCACCTAGCCCCTTGGTCGTGCGGGAGCCTCGGGCACCACCTGCTCCTTGGTGCTT
66 GCACCATCGGCACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGG-CCTT
82455017 GGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
130 GG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* ** * * * * *
82455057 CCTGG-TCGCCCGGGAGCCTC-GATATCATCGGCAACCTAGGCCCTTGGTCGTTCGAGAGCCTCG
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* * * *
82455120 GGCACCATCGGAACCTAGGCCCTTGGTCGTGCGAGATCCTCGGGCACCATCGGAACCTATGGCCC
65 GGCACCATCGGCACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTA-GGCCT
* *
82455185 TGGTCGTGCGGGAGCCTCGGCCACCATTGGCAACCTAGGCC
129 TGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * ** *
82455226 CTTGG-TCGTGCGGGAGCCTCGGCCACTATCGGC-ACCTAGGCCCCTGGTCGTGTAGGAGCTTCG
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
*
82455289 GCCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCT
65 GGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCC-
* **
82455354 TTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG
128 TTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
82455395 CTTGGATGTACGGGAGCCTCAGG-CACCATCGGCAACCTAGGCCCCGGGTCGTGCGGGAGCCTCG
1 CTTGGATGTGCGGGAGCCTC-GGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
82455459 GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCCA
65 GGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCC-
* * *
82455523 TTGGTCGTGCAGGAGCCTCGGCCACCATCGGCATCTAGGCC
128 TTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
82455564 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGTGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
* * * *
82455629 GCACCATCGGTAACCTAGG-CCTTGATCGTGCGAGAACCTCGGGCACCATCGGTAACCTAGGCCT
66 GCACCATCGG-CACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG-CACCTAGGCCT
** * * **
82455693 TCATCGTGCGAGAAG-CTCGGGCACCATCGGCACCTTGGTG
129 TGGTCGTGCG-GGAGCCTCGGGCACCATCGGCACCTAGGCC
* * *
82455733 CTTGGATGTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
* * * * ** * * *
82455798 GCACCATCGGTACCTTGGCGCCTTGGAT-GTGCGGGAGCCTCGAGCAGTATTGGCACCTTGGTGC
66 GCACCATCGGCACCTAGGC-CCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGG-CC
** * * * **
82455862 TTGGAT-GTGCGGGAGCCTCGAACAGCATTGGCACCTTGGTG
128 TTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
82455903 CTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGG
1 CTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGG
82455944 ACGTTGGATG
Statistics
Matches: 760, Mismatches: 107, Indels: 40
0.84 0.12 0.04
Matches are distributed among these distances:
168 31 0.04
169 453 0.60
170 274 0.36
171 2 0.00
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (168 bp):
CTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
GCACCATCGGCACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCTTG
GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
Found at i:82455679 original size:23 final size:23
Alignment explanation
Indices: 82455653--82455721 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
82455643 CTAGGCCTTG
82455653 ATCGTGCGAGAACCTCGGGCACC
1 ATCGTGCGAGAACCTCGGGCACC
* * * **
82455676 ATC--G-G-TAACCTAGGCCTTC
1 ATCGTGCGAGAACCTCGGGCACC
*
82455695 ATCGTGCGAGAAGCTCGGGCACC
1 ATCGTGCGAGAACCTCGGGCACC
82455718 ATCG
1 ATCG
82455722 GCACCTTGGT
Statistics
Matches: 31, Mismatches: 11, Indels: 8
0.62 0.22 0.16
Matches are distributed among these distances:
19 12 0.39
20 1 0.03
21 2 0.06
22 1 0.03
23 15 0.48
ACGTcount: A:0.22, C:0.32, G:0.29, T:0.17
Consensus pattern (23 bp):
ATCGTGCGAGAACCTCGGGCACC
Found at i:82455973 original size:85 final size:86
Alignment explanation
Indices: 82454887--82455966 Score: 1077
Period size: 85 Copynumber: 12.8 Consensus size: 86
82454877 CACATTGCTG
* * * * * *
82454887 CTTGGA-CGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGACATTTGTCGTGCGGGAGCCTCG
1 CTTGGATCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* *
82454951 AGCACCATCGGCACCTAGCCC
66 GGCACCATCGGCACCTAGGCC
* * * * * **
82454972 CTTGG-TCGTGCGGGAGCCTCGGGCACCACCTGC-TCCTTGGTGCTTGGAT-GTGCGGGAGCCTC
1 CTTGGATCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC
82455034 GGGCACCATCGGCAACCTAGGCC
65 GGGCACCATCGGC-ACCTAGGCC
* ** * * * *
82455057 CCTGG-TCGCCCGGGAGCCTC-GATATCATCGGCAACCTAGGCCCTTGGTCGTTCGAGAGCCTCG
1 CTTGGATCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
*
82455120 GGCACCATCGGAACCTAGGCC
66 GGCACCATCGGCACCTAGGCC
* * *
82455141 CTTGG-TCGTGCGAGATCCTCGGGCACCATCGG-AACCTATGGCCC-TGGTCGTGCGGGAGCCTC
1 CTTGGATCGTGCGGGAGCCTCGGACACCATCGGCAACCTA-GGCCCTTGGTCGTGCGGGAGCCTC
* *
82455203 GGCCACCATTGGCAACCTAGGCC
65 GGGCACCATCGGC-ACCTAGGCC
* * * ** *
82455226 CTTGG-TCGTGCGGGAGCCTCGGCCACTATCGGC-ACCTAGGCCCCTGGTCGTGTAGGAGCTTCG
1 CTTGGATCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
*
82455289 GCCACCATCGGCAACCTAGGCC
66 GGCACCATCGGC-ACCTAGGCC
* * *
82455311 CTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCTTTGGTCGTGCGGGAGCCTCG
1 CTTGGATCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* **
82455374 GGCACCATCGGCACCTTGGTG
66 GGCACCATCGGCACCTAGGCC
* **
82455395 CTTGGAT-GTACGGGAGCCTCAGG-CACCATCGGCAACCTAGGCCCCGGGTCGTGCGGGAGCCTC
1 CTTGGATCGTGCGGGAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC
82455458 GGGCACCATCGGCAACCTAGGCC
65 GGGCACCATCGGC-ACCTAGGCC
* * * *
82455481 CTTGG-TCGTGCGAGAGCCTCGG-GACCATCGGC-ACCTAGGCCATTGGTCGTGCAGGAGCCTCG
1 CTTGGATCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* *
82455543 GCCACCATCGGCATCTAGGCC
66 GGCACCATCGGCACCTAGGCC
* * *
82455564 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGTGGGAGCCTCG
1 CTTGGATCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
*
82455628 GGCACCATCGGTAACCTAGG-C
66 GGCACCATCGG-CACCTAGGCC
* * * * ** *
82455649 CTT-GATCGTGCGAGAACCTCGGGCACCATCGGTAACCTAGG-CCTTCATCGTGCGAGAAG-CTC
1 CTTGGATCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG-GGAGCCTC
* **
82455711 GGGCACCATCGGCACCTTGGTG
65 GGGCACCATCGGCACCTAGGCC
* *
82455733 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCCTCG
1 CTTGGATCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* *
82455797 GGCACCATCGGTACCTTGGCGC
66 GGCACCATCGGCACCTAGGC-C
** * * **
82455819 CTTGGAT-GTGCGGGAGCCTC-GAGCAGTATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCT
1 CTTGGATCGTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCT
** * * * **
82455880 CGAACAGCATTGGCACCTTGGTG
64 CGGGCACCATCGGCACCTAGGCC
* * *
82455903 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACGTTGGAT-GTGCGGGTGCCTC
1 CTTGGATCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC
82455966 G
65 G
82455967 AGCAGCAGGG
Statistics
Matches: 832, Mismatches: 133, Indels: 60
0.81 0.13 0.06
Matches are distributed among these distances:
83 33 0.04
84 269 0.32
85 474 0.57
86 56 0.07
ACGTcount: A:0.15, C:0.32, G:0.33, T:0.19
Consensus pattern (86 bp):
CTTGGATCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
GGCACCATCGGCACCTAGGCC
Found at i:82455996 original size:43 final size:42
Alignment explanation
Indices: 82455721--82455999 Score: 249
Period size: 43 Copynumber: 6.5 Consensus size: 42
82455711 GGGCACCATC
* * * *
82455721 GGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAACACCATC
1 GGCACCCTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATT
* ** * * *
82455763 GGCAACCTCGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATC
1 GGCACCCT-GGTGCTTGGAT-GTGCGGGAGCCTCGAGCAGCATT
* * * *
82455806 GGTACCTTGGCGCCTTGGATGTGCGGGAGCCTCGAGCAGTATT
1 GGCACCCTGGTG-CTTGGATGTGCGGGAGCCTCGAGCAGCATT
* *
82455849 GGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAACAGCATT
1 GGCACCCTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATT
* * *
82455891 GGCACCTTGGTGCTTGGATGTGCGGGAGCCTCG-GACACCATC
1 GGCACCCTGGTGCTTGGATGTGCGGGAGCCTCGAG-CAGCATT
* * * **
82455933 GGCAACCTAGG-ACGTTGGATGTGCGGGTGCCTCGAGCAGCAGG
1 GGCACCCT-GGTGC-TTGGATGTGCGGGAGCCTCGAGCAGCATT
*
82455976 GGCACCCTGGTGGCTCGGATGTGC
1 GGCACCCTGGT-GCTTGGATGTGC
82456000 AGGCTAAAGA
Statistics
Matches: 196, Mismatches: 31, Indels: 19
0.80 0.13 0.08
Matches are distributed among these distances:
42 85 0.43
43 108 0.55
44 3 0.02
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.21
Consensus pattern (42 bp):
GGCACCCTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATT
Found at i:82461040 original size:35 final size:35
Alignment explanation
Indices: 82460979--82461048 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 35
82460969 TGGGATCGTA
* *
82460979 TATCTTTGAAGATCCCCTTTCGTATTTGCCAAGCT
1 TATCTTTGAAGATCCACTTTCATATTTGCCAAGCT
* *
82461014 TATCTTTGAAGAT-TACTTTCCATATTTTCCAAGCT
1 TATCTTTGAAGATCCACTTT-CATATTTGCCAAGCT
82461049 CTGAGATGGG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 4 0.13
35 26 0.87
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.43
Consensus pattern (35 bp):
TATCTTTGAAGATCCACTTTCATATTTGCCAAGCT
Found at i:82466260 original size:35 final size:35
Alignment explanation
Indices: 82466201--82466270 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
82466191 TAGGATCGCA
*
82466201 TATCTTTGAAGATCCCCTTCCATATTTGCCAAGCT
1 TATCTTTGAAGATCACCTTCCATATTTGCCAAGCT
* * * *
82466236 TATCTTTGAAGATTACTTTTCATATTTTCCAAGCT
1 TATCTTTGAAGATCACCTTCCATATTTGCCAAGCT
82466271 CTAGAAATGG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.24, C:0.23, G:0.10, T:0.43
Consensus pattern (35 bp):
TATCTTTGAAGATCACCTTCCATATTTGCCAAGCT
Found at i:82469066 original size:5 final size:5
Alignment explanation
Indices: 82469058--82469083 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
82469048 TACCGTGTCG
82469058 TGCCA TGCCA TGCCA TGCCA TGCCA T
1 TGCCA TGCCA TGCCA TGCCA TGCCA T
82469084 ACTTCTTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.38, G:0.19, T:0.23
Consensus pattern (5 bp):
TGCCA
Found at i:82469835 original size:58 final size:59
Alignment explanation
Indices: 82469743--82469859 Score: 191
Period size: 58 Copynumber: 2.0 Consensus size: 59
82469733 TCCCTCCCCA
* *
82469743 ATCCCAAAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAATAATGAATGAATC
1 ATCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATC
* *
82469802 ATCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATC
1 ATCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATC
82469860 GTCCATGTCC
Statistics
Matches: 54, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
58 49 0.91
59 5 0.09
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (59 bp):
ATCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATC
Found at i:82470297 original size:23 final size:24
Alignment explanation
Indices: 82470236--82470309 Score: 96
Period size: 24 Copynumber: 3.1 Consensus size: 24
82470226 CCGGTTAGGT
* *
82470236 TCCTGGCGGTGCTCCGGCGATCCA
1 TCCTGGCGGTGCTCCGGCGAGCTA
*
82470260 TCCTGGAGGTGCTCCGGCGAGCTA
1 TCCTGGCGGTGCTCCGGCGAGCTA
* *
82470284 TCC-GGCGGTGCTCCTGTGAGCTA
1 TCCTGGCGGTGCTCCGGCGAGCTA
82470307 TCC
1 TCC
82470310 CGGAATATCG
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
23 20 0.45
24 24 0.55
ACGTcount: A:0.09, C:0.34, G:0.34, T:0.23
Consensus pattern (24 bp):
TCCTGGCGGTGCTCCGGCGAGCTA
Found at i:82470600 original size:42 final size:42
Alignment explanation
Indices: 82470496--82471192 Score: 733
Period size: 42 Copynumber: 16.5 Consensus size: 42
82470486 CACATTGCTA
* * * * * * *
82470496 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTGGGAC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
82470539 GTTTGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * * **
82470581 CTTGGTCGTGCGGGAGCCTCGGGCACCACCGGAACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
*
82470623 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * **
82470666 CCTGGTCGCGCAGGAGCCTC-GATACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * *
82470708 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGAATCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * *
82470750 CTTGGTCGTGCGAGATCCTCGGGCACCATCGGAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
82470792 CCTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * *
82470835 CTTGGTCATGCGAGAGACTCGGGCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* **
82470877 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
82470919 CTTGGAT-GTGCGAGAGCCTCGGGCAGCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * **
82470962 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGACACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
82471004 CTTGGAT-GTACGGGAGCCTGGGGCACCATCGGCAACCTAGG-C
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * * **
82471046 CTTGATCGTGCGAGAACCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
** * *
82471088 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACATTGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
82471131 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CC
82471174 CTTGGAT-GTGCGGGAGCCT
1 CTTGG-TCGTGCGGGAGCCT
82471193 TGAGCAGCAG
Statistics
Matches: 546, Mismatches: 91, Indels: 34
0.81 0.14 0.05
Matches are distributed among these distances:
41 7 0.01
42 349 0.64
43 189 0.35
44 1 0.00
ACGTcount: A:0.15, C:0.32, G:0.34, T:0.18
Consensus pattern (42 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
Found at i:82470683 original size:85 final size:84
Alignment explanation
Indices: 82470496--82471164 Score: 694
Period size: 85 Copynumber: 7.9 Consensus size: 84
82470486 CACATTGCTA
* * * * * * * *
82470496 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTGGGACGTTTGTCGTGCGGGAGCCTCGG
1 CTTGGTCGTGC-GGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
82470561 GCACCATCGGC-ACCTAGGCC
64 GCACCATCGGCAACCTAGGCC
* * **
82470581 CTTGGTCGTGCGGGAGCCTCGGGCACCACCGGAACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGG
1 CTTGGTCGTGC-GGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
*
82470645 GCACCATCGACAACCTAGGCC
64 GCACCATCGGCAACCTAGGCC
* * ** *
82470666 CCTGGTCGCGCAGGAGCCTC-GATACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG
1 CTTGGTCGTGC-GGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
82470730 GCACCATCGG-AATCTAGGCC
64 GCACCATCGGCAACCTAGGCC
* * *
82470750 CTTGGTCGTGCGAGATCCTCGGGCACCATCGGAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGC
1 CTTGGTCGTGCG-GAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
82470815 CACCATCGGCAACCTAGGCC
65 CACCATCGGCAACCTAGGCC
* * *
82470835 CTTGGTCATGCGAGAGACTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
1 CTTGGTCGTGCG-GAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* **
82470900 CACCATCGGC-ACCTTGGTG
65 CACCATCGGCAACCTAGGCC
* *
82470919 CTTGGAT-GTGCGAGAGCCTCGGGCAGCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
1 CTTGG-TCGTGCG-GAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* * **
82470983 GGCACCATCGAC-ACCTTGGTG
63 GGCACCATCGGCAACCTAGGCC
* * * * *
82471004 CTTGGAT-GTACGGGAGCCTGGGGCACCATCGGCAACCTAGG-CCTTGATCGTGCGAGAACCTCG
1 CTTGG-TCGTGC-GGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* **
82471067 GGCACCATCGGC-ACCTTGGTG
63 GGCACCATCGGCAACCTAGGCC
** * *
82471088 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACATTGGCCCTTGGTCGTGCGGGAGCCTCG
1 CTTGG-TCGTGC-GGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
82471152 GGCACCATCGGCA
63 GGCACCATCGGCA
82471165 CCTTGGTGCC
Statistics
Matches: 507, Mismatches: 65, Indels: 23
0.85 0.11 0.04
Matches are distributed among these distances:
83 1 0.00
84 213 0.42
85 292 0.58
86 1 0.00
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (84 bp):
CTTGGTCGTGCGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
ACCATCGGCAACCTAGGCC
Found at i:82470685 original size:127 final size:127
Alignment explanation
Indices: 82470496--82471164 Score: 739
Period size: 127 Copynumber: 5.3 Consensus size: 127
82470486 CACATTGCTA
* * * * * * * ** *
82470496 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTGGGACGTTTGTCGTGCGGGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGC-GGAGCCTCGG
* **
82470561 GCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCACCGGAACCTTGGTG
65 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTTGGCC
* *
82470623 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCCTGGTCGCGCAGGAGCCTC-
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGC-GGAGCCTCG
** * * *
82470686 GATACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGAATCTAGGCC
64 GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTTGGCC
* *
82470750 CTTGGTCGTGCGAGATCCTCGGGCACCATCGG-AACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGC-GGAGCCTCGG
* * * * * *
82470814 CCACCATCGGCAACCTAGGCCCTTGGTCATGCGAGAGACTCGGGCACCATCGGCACCTAGGCC
65 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTTGGCC
* ** *
82470877 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAGCCTCG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCG-GAGCCTCG
* * **
82470940 GGCAGCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATC-GACACCTTGGTG
64 GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGA-ACCTTGGCC
* * * * *
82471004 CTTGGAT-GTACGGGAGCCTGGGGCACCATCGGCAACCTAGG-CCTTGATCGTGCGAGAACCTCG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG-GAGCCTCG
* ** ** *
82471067 GGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACATTGGC
64 GGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG-AACCTTGGC
82471130 C
127 C
82471131 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
82471165 CCTTGGTGCC
Statistics
Matches: 461, Mismatches: 66, Indels: 30
0.83 0.12 0.05
Matches are distributed among these distances:
126 74 0.16
127 378 0.82
128 9 0.02
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (127 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGAGCCTCGGG
CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTTGGCC
Found at i:82471169 original size:169 final size:168
Alignment explanation
Indices: 82470480--82471192 Score: 765
Period size: 169 Copynumber: 4.2 Consensus size: 168
82470470 GGTGCGGGAG
* * * * * * * * * *
82470480 CATCGGCACATTGCTACTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTGGGACGTTTGT
1 CATCGGCACCTTGGTCCTTGGATGTGCGGGAGCC-TGGACACCATCGGCAACCTAGGCCCTTGGT
* * *
82470545 CGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAC
65 CGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
* ** *
82470610 CGGAACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCAC
130 CGGAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGGCAC
* * * * * * * *
82470649 CATCGACAACCTAGGCCCCTGG-TCGCGCAGGAGCCTCGATACCATCGGCAACCTAGGCCCTTGG
1 CATCGGC-ACCTTGGTCCTTGGAT-GTGCGGGAGCCTGGACACCATCGGCAACCTAGGCCCTTGG
* * *
82470713 TCGTGCGAGAGCCTCGGGCACCATCGGAATCTAGGCCCTTGGTCGTGCGAGATCCTCGGGCACCA
64 TCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCA
*
82470778 TCGGAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGCCAC
129 TCGGAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCAC
* * * * * *
82470818 CATCGGCAACCTAGGCCCTTGG-TCATGCGAGAGACTCGGGCACCATCGGC-ACCTAGGCCCTTG
1 CATCGGC-ACCTTGGTCCTTGGAT-GTGCGGGAGCCT-GGACACCATCGGCAACCTAGGCCCTTG
* * ** *
82470881 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGAT-GTGCGAGAGCCTCGGGCAG
63 GTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCAC
82470945 CATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCAC
127 CATCGG-AACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCAC
* * * * *
82470988 CATCGACACCTTGGTGCTTGGATGTACGGGAGCCTGGGGCACCATCGGCAACCTAGG-CCTTGAT
1 CATCGGCACCTTGGTCCTTGGATGTGCGGGAGCCT-GGACACCATCGGCAACCTAGGCCCTTGGT
* * ** * **
82471052 CGTGCGAGAACCTCGGGCACCATCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAACACCA
65 CGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCA
* * *
82471116 TCGGCAACATTGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
129 TCGG-AACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCAC
82471157 CATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCCT
1 CATCGGCACCTTGGT-CCTTGGATGTGCGGGAGCCT
82471193 TGAGCAGCAG
Statistics
Matches: 466, Mismatches: 69, Indels: 17
0.84 0.12 0.03
Matches are distributed among these distances:
168 1 0.00
169 370 0.79
170 95 0.20
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.19
Consensus pattern (168 bp):
CATCGGCACCTTGGTCCTTGGATGTGCGGGAGCCTGGACACCATCGGCAACCTAGGCCCTTGGTC
GTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATC
GGAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCAC
Found at i:82480574 original size:40 final size:40
Alignment explanation
Indices: 82480337--82480560 Score: 278
Period size: 40 Copynumber: 5.6 Consensus size: 40
82480327 TGAATGATGT
* * * *
82480337 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
82480377 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
** *
82480417 CCGAACTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
82480455 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
82480496 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
82480536 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
82480561 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
39 33 0.20
40 121 0.74
41 10 0.06
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:82480582 original size:119 final size:119
Alignment explanation
Indices: 82480336--82480593 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
82480326 TTGAATGATG
* *
82480336 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
* **
82480401 GTGCGAGTTACTAATTCCGAACTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGTTACTAATACCGAACTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * *
82480455 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
** * * *
82480518 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGTTACTAAT-ACCGAACTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
82480575 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
82480594 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAATACCGAACTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:82486251 original size:58 final size:59
Alignment explanation
Indices: 82486159--82486280 Score: 167
Period size: 58 Copynumber: 2.1 Consensus size: 59
82486149 TCCCTCCCCA
* * * *
82486159 ATCCCAAAAGGTAGGATTTGGATACCGTTACATGT-TCGGTACCCAATAATGAATGAATC
1 ATCCCAAAAGATAGGATTCGGATACCGTTACATGTCT-GATACCCAACAATGAATGAATC
*
82486218 ATCCC-AAAGATAGGATTCGGATACCGTTGCATGTCTGATACCCAACAATGAATGAATC
1 ATCCCAAAAGATAGGATTCGGATACCGTTACATGTCTGATACCCAACAATGAATGAATC
*
82486276 GTCCC
1 ATCCC
82486281 TGTCCCTCCC
Statistics
Matches: 56, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
58 50 0.89
59 6 0.11
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (59 bp):
ATCCCAAAAGATAGGATTCGGATACCGTTACATGTCTGATACCCAACAATGAATGAATC
Found at i:82486947 original size:42 final size:41
Alignment explanation
Indices: 82486900--82487681 Score: 268
Period size: 42 Copynumber: 18.5 Consensus size: 41
82486890 GGTGCGGGAG
* * *
82486900 CATCGGCACATTGCTGCTTGGACGTGCTGGAGCCTTGGACAC
1 CATCGGCACCTTG-TGCTTGGACGTGCGGGAGCCTCGGACAC
* * *
82486942 CATCGGCAACCTAG-GACGTTTGTCGTGCGGGAGCCTCGGACAC
1 CATCGGC-ACCTTGTG-C-TTGGACGTGCGGGAGCCTCGGACAC
* * *
82486985 CATCGGCACCTTGGTGCTTGAATGTGCGGGAGCCTCGGGCAC
1 CATCGGCACCTT-GTGCTTGGACGTGCGGGAGCCTCGGACAC
* ** * * * *
82487027 CATCGGCAATCAAG-GCCCCTGGTCGCGCGGGAGCCTC-GATAC
1 CATCGGC-ACCTTGTG--CTTGGACGTGCGGGAGCCTCGGACAC
* * * *
82487069 CATCGGCAACCTAG-GCCCTTGGTCGTGCGAGAGCCTCGGTCAC
1 CATCGGC-ACCTTGTG--CTTGGACGTGCGGGAGCCTCGGACAC
* * * * * * * *
82487112 CATTGGAACCTAG-GCCCCTAGTCGTGCGGGAGCCTCAGCCAC
1 CATCGGCACCTTGTG--CTTGGACGTGCGGGAGCCTCGGACAC
* * * * * *
82487154 CATCGGTAACCTAGGCGCTTGGTCATGCGGGAGCCTCGGCCAC
1 CATCGG-CACCT-TGTGCTTGGACGTGCGGGAGCCTCGGACAC
* * * ** * *
82487197 CATCGGCACCTAG-GCCCCTGGTCAG-GTAGGAGCTTCGGCCAC
1 CATCGGCACCTTGTG--CTTGGAC-GTGCGGGAGCCTCGGACAC
* * * *
82487239 CATCGGCAACCTAG-GCCCTTGGCCGTGCGAGAGCCTCGGGCAC
1 CATCGGC-ACCTTGTG--CTTGGACGTGCGGGAGCCTCGGACAC
* * * * *
82487282 CATCGGCTCCTTGGTGCTTAGATGTGCGGGAGCCTTGGGCAC
1 CATCGGCACCTT-GTGCTTGGACGTGCGGGAGCCTCGGACAC
* * *
82487324 CATCGGCAACCTAG-GCCCCTGGTCGTGCGGGAGCCTCGG-CAC
1 CATCGGC-ACCTTGTG--CTTGGACGTGCGGGAGCCTCGGACAC
* * * *
82487366 CATCGGCAACCTAG-GCCCTTGGTCGTGCGAGAGCCTCGG-GAC
1 CATCGGC-ACCTTGTG--CTTGGACGTGCGGGAGCCTCGGACAC
* * * *
82487408 CATTGGCA-CTAG-GCCCTTGGTCGTGCGGGAGCCTCGGCCAC
1 CATCGGCACCTTGTG--CTTGGACGTGCGGGAGCCTCGGACAC
* * * *
82487449 CATCGGCACCTAGGGCCTTGGATGTGCGGGAGCCTCGGGCAC
1 CATCGGCACCTTGTG-CTTGGACGTGCGGGAGCCTCGGACAC
* * * * * *
82487491 CATCGGAACCTAG-GCCCCTAGTCGTGCGGGAGCCTCGGCCAC
1 CATCGGCACCTTGTG--CTTGGACGTGCGGGAGCCTCGGACAC
* * * * * * *
82487533 CATCGGTAACCTAGGCGCTTGGTCATGCGAGAGCCTCGGCCAC
1 CATCGG-CACCT-TGTGCTTGGACGTGCGGGAGCCTCGGACAC
* * * * ** *
82487576 CATCGGCACCTAG-GCCCCTGGTCATGTAGGAG-CTCGGCCAC
1 CATCGGCACCTTGTG--CTTGGACGTGCGGGAGCCTCGGACAC
* * * *
82487617 CATCGGCAACCTAG-GCCCTTGGTCGTACGGGAGCCTCGGGCAC
1 CATCGGC-ACCTTGTG--CTTGGACGTGCGGGAGCCTCGGACAC
82487660 CATCGGCACCTTGGTGCTTGGA
1 CATCGGCACCTT-GTGCTTGGA
82487682 TCGTTGCCCC
Statistics
Matches: 600, Mismatches: 105, Indels: 70
0.77 0.14 0.09
Matches are distributed among these distances:
40 30 0.05
41 32 0.05
42 335 0.56
43 196 0.33
44 5 0.01
45 2 0.00
ACGTcount: A:0.16, C:0.33, G:0.32, T:0.18
Consensus pattern (41 bp):
CATCGGCACCTTGTGCTTGGACGTGCGGGAGCCTCGGACAC
Found at i:82487057 original size:85 final size:85
Alignment explanation
Indices: 82486916--82487670 Score: 798
Period size: 85 Copynumber: 8.9 Consensus size: 85
82486906 CACATTGCTG
* * * * * * *
82486916 CTTGGACGTGCTGGAGCCTTGGACACCATCGGCAACCTAGGACGTTTGTCGTGCGGGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * **
82486981 ACACCATCGGCACCTTGGTG
66 CCACCATCGGCACCTAGGCC
* * * * * *
82487001 CTTGAAT-GTGCGGGAGCCTCGGGCACCATCGGCAATCAAGGCCCCTGGTCGCGCGGGAGCCTC-
1 CTTG-GTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
**
82487064 GATACCATCGGCAACCTAGGCC
65 GCCACCATCGGC-ACCTAGGCC
* * * * * *
82487086 CTTGGTCGTGCGAGAGCCTCGGTCACCATTGG-AACCTAGGCCCCTAGTCGTGCGGGAGCCTCAG
1 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *
82487150 CCACCATCGGTAACCTAGGCG
66 CCACCATCGG-CACCTAGGCC
* * ** *
82487171 CTTGGTCATGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGCCCCTGGTCAG-GTAGGAGCTTCG
1 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTC-GTGCGGGAGCCTCG
82487234 GCCACCATCGGCAACCTAGGCC
65 GCCACCATCGGC-ACCTAGGCC
* * * * * ** * *
82487256 CTTGGCCGTGCGAGAGCCTCGGGCACCATCGGC-TCCTTGGTGCTTAGAT-GTGCGGGAGCCTTG
1 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCG
*
82487319 GGCACCATCGGCAACCTAGGCC
65 GCCACCATCGGC-ACCTAGGCC
* *
82487341 CCTGGTCGTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *
82487405 -GACCATTGGCA-CTAGGCC
66 CCACCATCGGCACCTAGGCC
*
82487423 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGGCCTTGGAT-GTGCGGGAGCCTCG
1 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
* *
82487486 GGCACCATCGGAACCTAGGCC
65 GCCACCATCGGCACCTAGGCC
* * * * * *
82487507 CCTAGTCGTGCGGGAGCCTCGGCCACCATCGGTAACCTAGGCGCTTGGTCATGCGAGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
82487572 CCACCATCGGCACCTAGGCC
66 CCACCATCGGCACCTAGGCC
* * ** *
82487592 CCTGGTCATGTAGGAG-CTCGGCCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
82487656 GCACCATCGGCACCT
66 CCACCATCGGCACCT
82487671 TGGTGCTTGG
Statistics
Matches: 561, Mismatches: 91, Indels: 37
0.81 0.13 0.05
Matches are distributed among these distances:
82 55 0.10
83 20 0.04
84 154 0.27
85 329 0.59
86 3 0.01
ACGTcount: A:0.16, C:0.34, G:0.32, T:0.18
Consensus pattern (85 bp):
CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
CCACCATCGGCACCTAGGCC
Found at i:82487139 original size:127 final size:128
Alignment explanation
Indices: 82486915--82487685 Score: 793
Period size: 127 Copynumber: 6.1 Consensus size: 128
82486905 GCACATTGCT
* * * * * ** * *
82486915 GCTTGGACGTGCTGGAGCCTTGGACACCATCGGCAACCTAGGACGTTTGTCGTGCGGGAGCCTCG
1 GCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGCCCCTGGTCGTGCGAGAGCCTCG
* * ** * * *
82486980 GACACCATCGGC-ACCTTGGTGCTTGAAT-GTGCGGGAGCCTCGGGCACCATCGGCAATCAAGGC
65 GCCACCATCGGCAACCTAGGCCCTT-AGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC
* * * ** *
82487043 CCCTGGTCGCGCGGGAGCCTC-GATACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCG
1 GCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGCCCCTGGTCGTGCGAGAGCCTCG
* * * * * *
82487107 GTCACCATTGG-AACCTAGGCCCCTAGTCGTGCGGGAGCCTCAGCCACCATCGGTAACCTAGGC
65 GCCACCATCGGCAACCTAGGCCCTTAGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC
* * *
82487170 GCTTGGTCATGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGGTCAG-G-TAGGAGCTTC
1 GCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGGTC-GTGCGA-GAGCCTC
* * * * * *
82487233 GGCCACCATCGGCAACCTAGGCCCTTGGCCGTGCGAGAGCCTCGGGCACCATCGGC-TCCTTGGT
64 GGCCACCATCGGCAACCTAGGCCCTTAGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC
* * * *
82487297 GCTTAGAT-GTGCGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTC
1 GCTT-GGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGCCCCTGGTCGTGCGAGAGCCTC
* * *
82487361 GG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCATTGGC-A-CTAGGC
64 GGCCACCATCGGCAACCTAGGCCCTTAGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC
* * * *
82487422 CCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGGCCTTGGAT-GTGCGGGAGCCTCG
1 GCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGG-TCGTGCGAGAGCCTCG
* * * *
82487486 GGCACCATCGG-AACCTAGGCCCCTAGTCGTGCGGGAGCCTCGGCCACCATCGGTAACCTAGGC
65 GCCACCATCGGCAACCTAGGCCCTTAGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC
* * * *
82487549 GCTTGGTCATGCGAGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGGTCATG-TAGGAG-CTCG
1 GCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGGTCGTGCGA-GAGCCTCG
* * * *
82487612 GCCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGC-ACCTTGGT
65 GCCACCATCGGCAACCTAGGCCCTTAGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC
82487675 GCTTGGATCGT
1 GCTTGG-TCGT
82487686 TGCCCCCATA
Statistics
Matches: 538, Mismatches: 85, Indels: 41
0.81 0.13 0.06
Matches are distributed among these distances:
124 58 0.11
125 48 0.09
126 39 0.07
127 304 0.57
128 89 0.17
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (128 bp):
GCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGGTCGTGCGAGAGCCTCGG
CCACCATCGGCAACCTAGGCCCTTAGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC
Found at i:82492186 original size:22 final size:21
Alignment explanation
Indices: 82492156--82492214 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
82492146 ATACAATCAT
*
82492156 AGATTTGATATGTAATCTTAGG
1 AGATTTGATTTGTAATCTTA-G
*
82492178 AGATATGATTTTGTAAATCTTAG
1 AGATTTGA-TTTGT-AATCTTAG
82492201 AGATTTGATTTGTA
1 AGATTTGATTTGTA
82492215 GATACCATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 1 0.03
22 12 0.38
23 12 0.38
24 7 0.22
ACGTcount: A:0.32, C:0.03, G:0.20, T:0.44
Consensus pattern (21 bp):
AGATTTGATTTGTAATCTTAG
Found at i:82492703 original size:5 final size:5
Alignment explanation
Indices: 82492690--82492724 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
82492680 TCAATTTTTC
* *
82492690 TGCCG TGCCA TGCCG TGCCA TGCCA TGCCA TGCCA
1 TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA
82492725 ACTTCTTGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.14, C:0.40, G:0.26, T:0.20
Consensus pattern (5 bp):
TGCCA
Found at i:82492705 original size:10 final size:10
Alignment explanation
Indices: 82492690--82492723 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
82492680 TCAATTTTTC
82492690 TGCCGTGCCA
1 TGCCGTGCCA
82492700 TGCCGTGCCA
1 TGCCGTGCCA
*
82492710 TGCCATGCCA
1 TGCCGTGCCA
82492720 TGCC
1 TGCC
82492724 AACTTCTTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.12, C:0.41, G:0.26, T:0.21
Consensus pattern (10 bp):
TGCCGTGCCA
Found at i:82492939 original size:180 final size:180
Alignment explanation
Indices: 82492582--82492941 Score: 521
Period size: 186 Copynumber: 2.0 Consensus size: 180
82492572 ATAAGGAGTT
* *
82492582 AGTTAAACACTTGGCCGTGCCGCCCCCGGGAAACATGCATAACGGGGGCCGTGGTGGTGCGGGTG
1 AGTTAAACACTTGGCCGTGCCGCCCCCGGGAAACATGCACAACGGGGGCCGTGGTGGTGCGAGTG
* * * *
82492647 CGAGCTCCAAGTGTTGGCGGCCCGGGCACTTGTTCAATTTTTCTGCCGTGCCATGCCGTGCCATG
66 CGAGCTCCAACTGTTGGCGGCCCGGGCACTTGTTCAATTTATCTACCGTGCCAT-CCATGCCAT-
*
82492712 CCATGCCATGCCAACTTCTTGTATTTGTTTTGGGCCAACAGAAAAAATTTCTA
129 -CATGCCATGCCAACTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTTCTA
82492765 AGTTAAACACTTGGCCGTGCCGCCCCCTCGGGAAACATCGCACAACGGGGGCCGTGGTGGTGCGA
1 AGTTAAACACTTGGCCGTGCCG-CCCC-CGGGAAACAT-GCACAACGGGGGCCGTGGTGGTGCGA
82492830 GTGCGAGCTCCCAACTGTTGGCGGCCCGGGCACTTGTTCAA-TTATCTACCGTGCCAT-CATGCC
63 GTGCGAGCT-CCAACTGTTGGCGGCCCGGGCACTTGTTCAATTTATCTACCGTGCCATCCATGCC
** * **
82492893 AT-ATTTCAT-TCGGCTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTT
127 ATCATGCCATGCCAACTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTT
82492942 TCAATTAAAA
Statistics
Matches: 161, Mismatches: 12, Indels: 11
0.88 0.07 0.06
Matches are distributed among these distances:
180 36 0.22
181 5 0.03
183 22 0.14
184 11 0.07
185 10 0.06
186 47 0.29
187 30 0.19
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.26
Consensus pattern (180 bp):
AGTTAAACACTTGGCCGTGCCGCCCCCGGGAAACATGCACAACGGGGGCCGTGGTGGTGCGAGTG
CGAGCTCCAACTGTTGGCGGCCCGGGCACTTGTTCAATTTATCTACCGTGCCATCCATGCCATCA
TGCCATGCCAACTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTTCTA
Found at i:82493334 original size:24 final size:24
Alignment explanation
Indices: 82493295--82493348 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
82493285 CCGGTTAGGT
* * *
82493295 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGATGATCCGACGAGCCA
*
82493319 TCCCGGCGATGATCCGGCGAGCCA
1 TCCCGGCGATGATCCGACGAGCCA
82493343 TCCCGG
1 TCCCGG
82493349 GATACACAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.13, C:0.41, G:0.31, T:0.15
Consensus pattern (24 bp):
TCCCGGCGATGATCCGACGAGCCA
Found at i:82493473 original size:58 final size:59
Alignment explanation
Indices: 82493382--82493502 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
82493372 CCCTCCCCAA
* *
82493382 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
* *
82493441 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
82493499 TCCC
1 TCCC
82493503 TGTCCCTCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 54 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
Found at i:82493921 original size:24 final size:24
Alignment explanation
Indices: 82493894--82493947 Score: 108
Period size: 24 Copynumber: 2.2 Consensus size: 24
82493884 CCGGTTAGGT
82493894 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
82493918 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
82493942 TCCCGG
1 TCCCGG
82493948 AATATCGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.07, C:0.43, G:0.37, T:0.13
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:82494233 original size:42 final size:42
Alignment explanation
Indices: 82494130--82495072 Score: 990
Period size: 42 Copynumber: 22.5 Consensus size: 42
82494120 CACATTGCTG
* * * * * *
82494130 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGAC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * * **
82494173 GTTTGTCGTGCGGGAGCCTCGGGCACCACCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
82494215 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG--
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* **
82494256 C-TGGTCGCGCGGGAG-CTC-GATACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
82494296 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGAACCTAGG-C
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
82494337 C-TGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
82494379 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * ** * *
82494421 CCTGGTCATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
82494464 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* **
82494506 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
*
82494548 CTTGGAT-GTGCGGGAGCCTTGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
82494591 CCTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
82494633 CTTGGTCGTGCGAGAGCCTCGGG-ACCATTGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
*
82494674 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
82494716 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
82494759 CCTGGTCGTGC-GGAGCCTCGGGCACCATCGGCAACCTAGG-C
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * * *
82494800 CTTGATCGTGCGAGAACCTCGGGCACCATCGGAACCTCGG-C
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * * * **
82494841 CTTGATCGTGC-AGAACCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
** *
82494882 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * **
82494925 CTTGGTCGTGAGGGAGCCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * * * * **
82494967 CTTGGAT-GTGCGGGAGCCTCGAGAAGCATTGGCACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * *
82495009 CTTGGAT-GTACGGGAGCCTCGGACACCATCGGCAACCTAGGAC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
82495052 ATTGGAT-GTGCGGGTGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCG
82495073 AGCAGCAGGG
Statistics
Matches: 774, Mismatches: 98, Indels: 56
0.83 0.11 0.06
Matches are distributed among these distances:
38 18 0.02
39 4 0.01
40 66 0.09
41 88 0.11
42 389 0.50
43 209 0.27
ACGTcount: A:0.15, C:0.32, G:0.34, T:0.18
Consensus pattern (42 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
Found at i:82494470 original size:168 final size:168
Alignment explanation
Indices: 82494155--82495072 Score: 1148
Period size: 168 Copynumber: 5.5 Consensus size: 168
82494145 GCCTTGGACG
* * * *
82494155 CCATCGGCAACCTAGGACGTTTGTCGTGCGGGAGCCTCGGGCACCACCGGCACCTTGGTGCTTGG
1 CCATCGGC-ACCTAGG-CCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGG
* * **
82494220 ATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG---CTGGTCGCGCGGGAG-CTC-GATACC
64 ATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTG-AGGAGCCTCGGGCACC
82494280 ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCA
128 ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCA
* * *
82494321 CCATCGGAACCTAGGCC-TGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCGCTTGG-
1 CCATCGGCACCTAGGCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGGA
* * * *
82494384 TCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGCCCCTGGTCATGTAGGAGCTTCGGCCACC
65 T-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTG-AGGAGCCTCGGGCACC
82494448 ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCA
128 ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCA
*
82494489 CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGA
1 CCATCGGCACCTAGG-CCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGA
* *
82494554 TGTGCGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTC-GGCACCA
65 TGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTG-AGGAGCCTCGGGCACCA
82494618 TCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-A
129 TCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCA
* * **
82494657 CCATTGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCTTGGA
1 CCATCGGCACCTAGG-CCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGA
*
82494722 TGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGAGCCTCGGGCACCAT
65 TGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGAGGAGCCTCGGGCACCAT
* *
82494787 CGGCAACCTAGG-CCTTGATCGTGCGAGAACCTCGGGCA
130 CGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCA
* * * * * *
82494825 CCATCGGAACCTCGGCCTTGATCGTGC-AGAACCTCGGGCACCATCGGCACCTTGGTGCTTGGAT
1 CCATCGGCACCTAGGCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGAT
** * *
82494889 GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGGTCGTGAGGGAGCCTCGGGCACCAT
66 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGA-GGAGCCTCGGGCACCAT
* ** * * *
82494954 CGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGAA
130 CGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCA
* * * * * * *
82494992 GCATTGGCACCTTGGTGCTTGGAT-GTACGGGAGCCTCGGACACCATCGGCAACCTAGG-ACATT
1 CCATCGGCACCTAGG-CCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGC-TT
*
82495055 GGATGTGCGGGTGCCTCG
62 GGATGTGCGGGAGCCTCG
82495073 AGCAGCAGGG
Statistics
Matches: 661, Mismatches: 70, Indels: 38
0.86 0.09 0.05
Matches are distributed among these distances:
163 36 0.05
164 38 0.06
165 7 0.01
166 97 0.15
167 93 0.14
168 207 0.31
169 102 0.15
170 81 0.12
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.18
Consensus pattern (168 bp):
CCATCGGCACCTAGGCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGAT
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGAGGAGCCTCGGGCACCATC
GGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCA
Found at i:82494870 original size:22 final size:22
Alignment explanation
Indices: 82494804--82494870 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 22
82494794 CTAGGCCTTG
82494804 ATCGTGCGAGAACCTCGGGCACC
1 ATCGTGC-AGAACCTCGGGCACC
* ***
82494827 ATC--G--GAACCTCGGCCTTG
1 ATCGTGCAGAACCTCGGGCACC
82494845 ATCGTGCAGAACCTCGGGCACC
1 ATCGTGCAGAACCTCGGGCACC
82494867 ATCG
1 ATCG
82494871 GCACCTTGGT
Statistics
Matches: 32, Mismatches: 8, Indels: 9
0.65 0.16 0.18
Matches are distributed among these distances:
18 13 0.41
20 1 0.03
21 1 0.03
22 14 0.44
23 3 0.09
ACGTcount: A:0.21, C:0.34, G:0.28, T:0.16
Consensus pattern (22 bp):
ATCGTGCAGAACCTCGGGCACC
Found at i:82495086 original size:127 final size:128
Alignment explanation
Indices: 82494870--82495108 Score: 338
Period size: 127 Copynumber: 1.9 Consensus size: 128
82494860 GGGCACCATC
* * * *
82494870 GGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGGTCGTG
1 GGCACCTTGGTGCTTGGATGTACGGGAGCCTCGAACACCATCGGCAACCTAGGACATTGGTCGTG
* * * *
82494935 AGGGAGCCTCGGGCACCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGAAGCATT
66 AGGGAGCCTCGAGCACCAGCGGCACCCTGGTGGCTCGGATGTGCGGGAGCCTCGAGAAGCATT
*
82494997 GGCACCTTGGTGCTTGGATGTACGGGAGCCTCGGACACCATCGGCAACCTAGGACATTGGAT-GT
1 GGCACCTTGGTGCTTGGATGTACGGGAGCCTCGAACACCATCGGCAACCTAGGACATTGG-TCGT
* * * *
82495061 GCGGGTGCCTCGAGCAGCAGGGGCACCCTGGTGGCTCGGATGTGCGGG
65 GAGGGAGCCTCGAGCACCAGCGGCACCCTGGTGGCTCGGATGTGCGGG
82495109 CTAAAGAAAA
Statistics
Matches: 97, Mismatches: 13, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
127 82 0.85
128 15 0.15
ACGTcount: A:0.16, C:0.27, G:0.37, T:0.20
Consensus pattern (128 bp):
GGCACCTTGGTGCTTGGATGTACGGGAGCCTCGAACACCATCGGCAACCTAGGACATTGGTCGTG
AGGGAGCCTCGAGCACCAGCGGCACCCTGGTGGCTCGGATGTGCGGGAGCCTCGAGAAGCATT
Found at i:82495087 original size:85 final size:85
Alignment explanation
Indices: 82494130--82495072 Score: 1034
Period size: 85 Copynumber: 11.2 Consensus size: 85
82494120 CACATTGCTG
* * * * * * * *
82494130 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGACGTTTGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * **
82494195 GCACCACCGGC-ACCTTGGTG
65 GCACCATCGGCAACCTAGGCC
*
82494215 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG--C-TGGTCGCGCGGGAG-CTC-G
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
**
82494275 ATACCATCGGCAACCTAGGCC
65 GCACCATCGGCAACCTAGGCC
* *
82494296 CTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGAACCTAGG-CC-TGGTCGTGCGGGAGCCTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *
82494358 CCACCATCGGCAACCTAGGCG
65 GCACCATCGGCAACCTAGGCC
* * * ** *
82494379 CTTGG-TCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGGTCATGTAGGAGCTTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
82494443 CCACCATCGGCAACCTAGGCC
65 GCACCATCGGCAACCTAGGCC
*
82494464 CTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* **
82494528 GCACCATCGGC-ACCTTGGTG
65 GCACCATCGGCAACCTAGGCC
* *
82494548 CTTGGATGTGCGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTC-G
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
82494612 GCACCATCGGCAACCTAGGCC
65 GCACCATCGGCAACCTAGGCC
* *
82494633 CTTGG-TCGTGCGAGAGCCTCGGG-ACCATTGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
82494696 CCACCATCGGC-ACCTAGGCC
65 GCACCATCGGCAACCTAGGCC
*
82494716 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGC-GGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
82494780 GCACCATCGGCAACCTAGG-C
65 GCACCATCGGCAACCTAGGCC
* * * * * * *
82494800 CTT-GATCGTGCGAGAACCTCGGGCACCATCGGAACCTCGG-CCTTGATCGTGC-AGAACCTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* **
82494862 GCACCATCGGC-ACCTTGGTG
65 GCACCATCGGCAACCTAGGCC
** * *
82494882 CTTGGATGTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGGTCGTGAGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* **
82494947 GCACCATCGGC-ACCTTGGTG
65 GCACCATCGGCAACCTAGGCC
* * * * * ** *
82494967 CTTGGATGTGCGGGAGCCTCGAGAAGCATTGGCACCTTGGTGCTTGGAT-GTACGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
* *
82495031 ACACCATCGGCAACCTAGGAC
65 GCACCATCGGCAACCTAGGCC
* *
82495052 ATTGGATGTGCGGGTGCCTCG
1 CTTGGATGTGCGGGAGCCTCG
82495073 AGCAGCAGGG
Statistics
Matches: 746, Mismatches: 88, Indels: 48
0.85 0.10 0.05
Matches are distributed among these distances:
80 17 0.02
81 58 0.08
82 68 0.09
83 132 0.18
84 169 0.23
85 302 0.40
ACGTcount: A:0.15, C:0.32, G:0.34, T:0.18
Consensus pattern (85 bp):
CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
CACCATCGGCAACCTAGGCC
Found at i:82495093 original size:85 final size:85
Alignment explanation
Indices: 82494856--82495108 Score: 230
Period size: 85 Copynumber: 3.0 Consensus size: 85
82494846 TCGTGCAGAA
* * * * ** *
82494856 CCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA-ACACCATCGGCAACCT
1 CCTCGGACACCATCGGCACCTAGGTACTTGGATGTGCGGGAGCCTCGAGA-AGCAGGGGCACCCT
** *
82494920 CGG-CCCTTGG-TCGTGA-GGGAG
65 -GGTGGCTCGGAT-GT-ACGGGAG
* * * ** *
82494941 CCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGAAGCATTGGCACCTTG
1 CCTCGGACACCATCGGCACCTAGGTACTTGGATGTGCGGGAGCCTCGAGAAGCAGGGGCACCCTG
*
82495006 GT-GCTTGGATGTACGGGAG
66 GTGGCTCGGATGTACGGGAG
* *
82495025 CCTCGGACACCATCGGCAACCTAGG-ACATTGGATGTGCGGGTGCCTCGAGCAGCAGGGGCACCC
1 CCTCGGACACCATCGGC-ACCTAGGTAC-TTGGATGTGCGGGAGCCTCGAGAAGCAGGGGCACCC
*
82495089 TGGTGGCTCGGATGTGCGGG
64 TGGTGGCTCGGATGTACGGG
82495109 CTAAAGAAAA
Statistics
Matches: 146, Mismatches: 15, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
83 1 0.01
84 31 0.21
85 100 0.68
86 14 0.10
ACGTcount: A:0.16, C:0.28, G:0.36, T:0.19
Consensus pattern (85 bp):
CCTCGGACACCATCGGCACCTAGGTACTTGGATGTGCGGGAGCCTCGAGAAGCAGGGGCACCCTG
GTGGCTCGGATGTACGGGAG
Found at i:82495514 original size:17 final size:17
Alignment explanation
Indices: 82495482--82495521 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
82495472 TGTTAAGGAC
82495482 GCCTTGTGCCTTCCAAG
1 GCCTTGTGCCTTCCAAG
*
82495499 TCCTTG-GCCTTGCCAAG
1 GCCTTGTGCCTT-CCAAG
82495516 GCCTTG
1 GCCTTG
82495522 CCTGCATTCG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.10, C:0.35, G:0.25, T:0.30
Consensus pattern (17 bp):
GCCTTGTGCCTTCCAAG
Found at i:82502283 original size:5 final size:5
Alignment explanation
Indices: 82502273--82502311 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
82502263 TTCAATTTTC
* * *
82502273 TGCCG TGCCG TGCCG TGCCA TGCCA TGCCG TGCCA TGCC
1 TGCCG TGCCG TGCCG TGCCG TGCCG TGCCG TGCCG TGCC
82502312 ATACTTCTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.08, C:0.41, G:0.31, T:0.21
Consensus pattern (5 bp):
TGCCG
Found at i:82502296 original size:15 final size:15
Alignment explanation
Indices: 82502273--82502313 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
82502263 TTCAATTTTC
* *
82502273 TGCCGTGCCGTGCCG
1 TGCCATGCCATGCCG
82502288 TGCCATGCCATGCCG
1 TGCCATGCCATGCCG
82502303 TGCCATGCCAT
1 TGCCATGCCAT
82502314 ACTTCTTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.10, C:0.39, G:0.29, T:0.22
Consensus pattern (15 bp):
TGCCATGCCATGCCG
Found at i:82502731 original size:26 final size:27
Alignment explanation
Indices: 82502691--82502742 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 27
82502681 GAGCGTTGGG
82502691 CTGAAAAAGTGTCCCTGTTTCAGACAT
1 CTGAAAAAGTGTCCCTGTTTCAGACAT
*
82502718 CTGAAACA-TGTCCCTGTTTCAGACA
1 CTGAAAAAGTGTCCCTGTTTCAGACA
82502743 CATGAATGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (27 bp):
CTGAAAAAGTGTCCCTGTTTCAGACAT
Found at i:82503050 original size:58 final size:59
Alignment explanation
Indices: 82502972--82503092 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
82502962 CCCTCCCCAA
* *
82502972 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
* *
82503031 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
82503089 TCCC
1 TCCC
82503093 TGTCTCTCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 54 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
Found at i:82503515 original size:24 final size:24
Alignment explanation
Indices: 82503488--82503539 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
82503478 CCGGTTAGGT
82503488 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
82503512 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
82503536 TCCC
1 TCCC
82503540 AGAATATCGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.08, C:0.44, G:0.35, T:0.13
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:82508576 original size:19 final size:20
Alignment explanation
Indices: 82508545--82508584 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
82508535 TAAAAATCGG
82508545 TAAATAATATTTTTGA-AAA
1 TAAATAATATTTTTGAGAAA
82508564 TAAA-AATATTTTTTGAGAAA
1 TAAATAATA-TTTTTGAGAAA
82508584 T
1 T
82508585 CAGTTTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.21
19 11 0.58
20 4 0.21
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.42
Consensus pattern (20 bp):
TAAATAATATTTTTGAGAAA
Found at i:82508774 original size:133 final size:133
Alignment explanation
Indices: 82508538--82508835 Score: 439
Period size: 133 Copynumber: 2.3 Consensus size: 133
82508528 TTTCATTTAA
* *** *
82508538 AAATCGGTAAATAATATTTTTGAAAATAAAAATATTTTTTGAGAAATC------A-GTTTTTAAA
1 AAATAGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTTAAA
*
82508596 TATTTTTTGGTTAGATTAAATATTTTATTGAAAAATAATTTAAAATGGAGAGAATTACAATATTA
66 TATTTTTTGGTTAGAGTAAATATTTTATTGAAAAATAATTTAAAATGGAGAGAATTACAATATTA
82508661 ACT
131 ACT
* *
82508664 AAATAGGTAAATAATATTCCGGGAAATATAAATATTTTTTGAGAAATCAATTTTATGGTTTTAAA
1 AAATAGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTTAAA
* * *
82508729 TATTTTTTGTTTAGAGTAAATATTTTATTGAAAAGTAATTTAAAATGGAGAGAATTACATTATTA
66 TATTTTTTGGTTAGAGTAAATATTTTATTGAAAAATAATTTAAAATGGAGAGAATTACAATATTA
82508794 ACT
131 ACT
*
82508797 AAATAGGTAAATAATATTTCGGAAAATAAAAATATTTTT
1 AAATAGGTAAATAATATTCCGGAAAATAAAAATATTTTT
82508836 AGAAATATAT
Statistics
Matches: 151, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
126 42 0.28
132 1 0.01
133 108 0.72
ACGTcount: A:0.44, C:0.03, G:0.12, T:0.41
Consensus pattern (133 bp):
AAATAGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTTAAA
TATTTTTTGGTTAGAGTAAATATTTTATTGAAAAATAATTTAAAATGGAGAGAATTACAATATTA
ACT
Found at i:82509716 original size:133 final size:133
Alignment explanation
Indices: 82509467--82509764 Score: 528
Period size: 133 Copynumber: 2.2 Consensus size: 133
82509457 TAAAAATCGA
82509467 TAAATAATATTTCC-GAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTTAAATATTTT
1 TAAATAATA-TTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTTAAATATTTT
82509531 TTGTTTAGAGTAAATATTTTATTGAAAAATAATTTAAAATGGAGAGAATTACAATATTAACTAAA
65 TTGTTTAGAGTAAATATTTTATTGAAAAATAATTTAAAATGGAGAGAATTACAATATTAACTAAA
82509596 TAGG
130 TAGG
* * *
82509600 TAAATAATATTCTGGGAAATATAAATATTTTTTGAGAAATCAATTTTATGGTTTTAAATATTTTT
1 TAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTTAAATATTTTT
82509665 T-TTTAGAGTAAATATTTTATTGAAAAATAATTTAAAATGGAGAGAAGTTACAATATTAACTAAA
66 TGTTTAGAGTAAATATTTTATTGAAAAATAATTTAAAATGGAGAGAA-TTACAATATTAACTAAA
82509729 TAGG
130 TAGG
*
82509733 TAAATCATATTCCGGAAAATAAAAATATTTTT
1 TAAATAATATTCCGGAAAATAAAAATATTTTT
82509765 AGAAATATAT
Statistics
Matches: 156, Mismatches: 7, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
132 48 0.31
133 108 0.69
ACGTcount: A:0.44, C:0.04, G:0.11, T:0.41
Consensus pattern (133 bp):
TAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTTAAATATTTTT
TGTTTAGAGTAAATATTTTATTGAAAAATAATTTAAAATGGAGAGAATTACAATATTAACTAAAT
AGG
Found at i:82509887 original size:929 final size:918
Alignment explanation
Indices: 82508078--82509935 Score: 3367
Period size: 929 Copynumber: 2.0 Consensus size: 918
82508068 TGTAATTGCA
82508078 AATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTT
1 AATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTT
82508143 ATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTACTCATTTCTTTAAAAAAAAATTA
66 ATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTACTCATTTCTTTAAAAAAAAATTA
82508208 GTTAGCTTAATTTCATTTAAAAAACGGTAAATAATATTTCCAAAAATAAAAATATTTTTTGAGAA
131 GTTAGCTTAATTTCATTTAAAAAACGGTAAATAATATTTCCAAAAATAAAAATATTTTTTGAGAA
82508273 ATCAGTTTTATGGTTTTAAATTTTTTTGGTTAGAGTAAATATTTTATAAAATAGAGAGAAGTTAC
196 ATCAGTTTTATGGTTTTAAATTTTTTTGGTTAGAGTAAATATTTTATAAAATAGAGAGAAGTTAC
82508338 AATATTAACTAAATAGGTAAATAATATTCCAGAAAATAAAAATATTTTTAGAAATATTTCACTCA
261 AATATTAACTAAATAGGTAAATAATATTCCAGAAAATAAAAATATTTTTAGAAATATTTCACTCA
82508403 CGAATATCGTGAATACTAATACCCCCATCTTTTTAGGCTGACACACAAATTCTTCCACGTTAGTA
326 CGAATATCGTGAATACTAATACCCCCATCTTTTTAGGCTGACACACAAATTCTTCCACGTTAGTA
* **
82508468 TCATCCAATATTTTCCTCTTTTACTAGTCATTGTTTTTTTTAAAAATTTAGTTAGCTTAATTTCA
391 TCACCCAATATTTTCCTCTTTTACTAGTCATTGTTTTTTAAAAAAATTTAGTTAGCTTAATTTCA
* ** *
82508533 TTTAAAAATCGGTAAATAATATTTTTGAAAATAAAAATATTTTTTGAGAAATCAGTTTTTAAATA
456 TTTAAAAATCGATAAATAATATTTCCGAAAATAAAAATATTTTTTGAGAAATCAGGTTTTAAATA
*
82508598 TTTTTTGGTTAGATTAAATATTTTATTGAAAAATAATTTAAAATGGAGAGAATTACAATATTAAC
521 TTTTTTGGTTAGAGTAAATATTTTATTGAAAAATAATTTAAAATGGAGAGAATTACAATATTAAC
82508663 TAAATAGGTAAATAATATTCCGGGAAATATAAATATTTTTTGAGAAATCAATTTTATGGTTTTAA
586 TAAATAGGTAAATAATATTCCGGGAAATATAAATATTTTTTGAGAAATCAATTTTATGGTTTTAA
* *
82508728 ATATTTTTTGTTTAGAGTAAATATTTTATTGAAAAGTAATTTAAAATGGAGAGAATTACATTATT
651 ATATTTTTTGTTTAGAGTAAATATTTTATTGAAAAATAATTTAAAATGGAGAGAATTACAATATT
*
82508793 AACTAAATAGGTAAATAATATTTCGGAAAATAAAAATATTTTTAGAAATATATCACTCACGAATA
716 AACTAAATAGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAAATATATCACTCACGAATA
*
82508858 TCGTGAGTACTAATACCCCCAACTTTTTATGCTGGCACACAACTTCTTCCACGGGAGTATCACCC
781 TCGTGAGTACTAATACCCCCAACTTTTTATGCTGGCACACAACTTCTTCCACGAGAGTATCACCC
82508923 AATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCATCGATC
846 AATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCATCGATC
82508988 ACAATCCT
911 ACAATCCT
*
82508996 AATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTTTACTAGTTTTGAGTAAGTTT
1 AATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTT
82509061 ATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACACTACTCATTTCTTTAAAAAAAAAA
66 ATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTT--ACTACTCATTTCTTT-AAAAAAAAA
*
82509126 TTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTTCCAAAAATAAAAATATTTTTTGA
128 TTAGTTAGCTTAATTTCATTTAAAAAACGGTAAATAATATTTCCAAAAATAAAAATATTTTTTGA
* *
82509191 GAAATCAGTTTTATGGTTTTAAATTTTTTTGGTTAGAGTAAATATTTTATAAAATGGATAGAAGT
193 GAAATCAGTTTTATGGTTTTAAATTTTTTTGGTTAGAGTAAATATTTTATAAAATAGAGAGAAGT
**
82509256 TACAATATTAACTAAATAGGTAAATAATATTCTGGAAAATAAAAATATTTTTAGAAATATTTCAC
258 TACAATATTAACTAAATAGGTAAATAATATTCCAGAAAATAAAAATATTTTTAGAAATATTTCAC
82509321 TCACGAATATCGTGAATACTAATACCCCCATCTTTTTAGGCTGACACACAAATTCTTCCACGTTA
323 TCACGAATATCGTGAATACTAATACCCCCATCTTTTTAGGCTGACACACAAATTCTTCCACGTTA
*
82509386 GTATCACCCTATATTTTCCTCTTTTACTAGTCATTGTTTTTTAAAAAAAATTTAGTTAGCTTAAT
388 GTATCACCCAATATTTTCCTCTTTTACTAGTCATTGTTTTTT-AAAAAAATTTAGTTAGCTTAAT
82509451 TTCATTTAAAAATCGATAAATAATATTTCCGAAAATAAAAATATTTTTTGAGAAATCAATTTTAT
452 TTCATTTAAAAATCGATAAATAATATTTCCGAAAATAAAAATATTTTTTGAGAAATC------A-
*
82509516 GGTTTTAAATATTTTTTGTTTAGAGTAAATATTTTATTGAAAAATAATTTAAAATGGAGAGAATT
510 GGTTTTAAATATTTTTTGGTTAGAGTAAATATTTTATTGAAAAATAATTTAAAATGGAGAGAATT
*
82509581 ACAATATTAACTAAATAGGTAAATAATATTCTGGGAAATATAAATATTTTTTGAGAAATCAATTT
575 ACAATATTAACTAAATAGGTAAATAATATTCCGGGAAATATAAATATTTTTTGAGAAATCAATTT
82509646 TATGGTTTTAAATATTTTTT-TTTAGAGTAAATATTTTATTGAAAAATAATTTAAAATGGAGAGA
640 TATGGTTTTAAATATTTTTTGTTTAGAGTAAATATTTTATTGAAAAATAATTTAAAATGGAGAGA
*
82509710 AGTTACAATATTAACTAAATAGGTAAATCATATTCCGGAAAATAAAAATATTTTTAGAAATATAT
705 A-TTACAATATTAACTAAATAGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAAATATAT
*
82509775 CACTCACGAATATCGTGAGTACTAATACCCCCATCTTTTTATGCTGGCACACAACTTCTTCCACG
769 CACTCACGAATATCGTGAGTACTAATACCCCCAACTTTTTATGCTGGCACACAACTTCTTCCACG
*
82509840 AGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGA
834 AGAGTATCACCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGA
*
82509905 AGCTCCTCGATCACAATCCT
899 AGCTCATCGATCACAATCCT
*
82509925 AATTGTCCAAA
1 AATTTTCCAAA
82509936 CCTACTTGTA
Statistics
Matches: 902, Mismatches: 26, Indels: 13
0.96 0.03 0.01
Matches are distributed among these distances:
918 102 0.11
920 15 0.02
921 304 0.34
922 74 0.08
928 45 0.05
929 362 0.40
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.38
Consensus pattern (918 bp):
AATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTT
ATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTACTCATTTCTTTAAAAAAAAATTA
GTTAGCTTAATTTCATTTAAAAAACGGTAAATAATATTTCCAAAAATAAAAATATTTTTTGAGAA
ATCAGTTTTATGGTTTTAAATTTTTTTGGTTAGAGTAAATATTTTATAAAATAGAGAGAAGTTAC
AATATTAACTAAATAGGTAAATAATATTCCAGAAAATAAAAATATTTTTAGAAATATTTCACTCA
CGAATATCGTGAATACTAATACCCCCATCTTTTTAGGCTGACACACAAATTCTTCCACGTTAGTA
TCACCCAATATTTTCCTCTTTTACTAGTCATTGTTTTTTAAAAAAATTTAGTTAGCTTAATTTCA
TTTAAAAATCGATAAATAATATTTCCGAAAATAAAAATATTTTTTGAGAAATCAGGTTTTAAATA
TTTTTTGGTTAGAGTAAATATTTTATTGAAAAATAATTTAAAATGGAGAGAATTACAATATTAAC
TAAATAGGTAAATAATATTCCGGGAAATATAAATATTTTTTGAGAAATCAATTTTATGGTTTTAA
ATATTTTTTGTTTAGAGTAAATATTTTATTGAAAAATAATTTAAAATGGAGAGAATTACAATATT
AACTAAATAGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAAATATATCACTCACGAATA
TCGTGAGTACTAATACCCCCAACTTTTTATGCTGGCACACAACTTCTTCCACGAGAGTATCACCC
AATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCATCGATC
ACAATCCT
Found at i:82510025 original size:83 final size:83
Alignment explanation
Indices: 82509886--82510039 Score: 290
Period size: 83 Copynumber: 1.9 Consensus size: 83
82509876 ACCACCAAAT
*
82509886 TCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGC
1 TCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCAC
82509951 AAATTTGACTCAACACGG
66 AAATTTGACTCAACACGG
*
82509969 TCTGCTTATCTTTGATAGAAGCTCTTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCAC
1 TCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCAC
82510034 AAATTT
66 AAATTT
82510040 TCCAAAGTAT
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
83 69 1.00
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (83 bp):
TCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCAC
AAATTTGACTCAACACGG
Found at i:82517312 original size:47 final size:47
Alignment explanation
Indices: 82517261--82517365 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
82517251 TAGTATTAAT
*
82517261 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
82517308 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
82517355 AATGTGATAAG
1 TATGTGATAAG
82517366 TCCCGAAGGG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:82524623 original size:25 final size:25
Alignment explanation
Indices: 82524595--82524642 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
82524585 TTATATTATG
* * *
82524595 AAAATGACTGTTTTTCCCCTAGGTA
1 AAAATGACCGTTATACCCCTAGGTA
82524620 AAAATGACCGTTATACCCCTAGG
1 AAAATGACCGTTATACCCCTAGG
82524643 GTTTACTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
AAAATGACCGTTATACCCCTAGGTA
Found at i:82524703 original size:20 final size:20
Alignment explanation
Indices: 82524678--82524724 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
82524668 ATTTTGATAT
82524678 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
82524698 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
82524718 ACATGAT
1 ACATGAT
82524725 GTATTCATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:82524919 original size:25 final size:26
Alignment explanation
Indices: 82524774--82524911 Score: 174
Period size: 26 Copynumber: 5.4 Consensus size: 26
82524764 GAGGAAGTAC
* *
82524774 AAAAGGGC-TATGCCCCAATTTATTC-
1 AAAAGGGCTTATGCCCCAGTTTA-CCG
82524799 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
82524825 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
82524851 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* *
82524877 AAAAGGGCTT-TGCCCTAGCTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
82524902 AAAAGGGCTT
1 AAAAGGGCTT
82524912 TTCCCTAGTT
Statistics
Matches: 103, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
25 30 0.29
26 73 0.71
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:82527294 original size:101 final size:99
Alignment explanation
Indices: 82527122--82527356 Score: 285
Period size: 101 Copynumber: 2.4 Consensus size: 99
82527112 ATATGGGGCC
* * * *
82527122 TCGACATGTGGATTTCGATATGTGATGTGTGAGTAAGACCATGGCATAGATGTGTGATTCCTATA
1 TCGAAATGT-GATTCCGATATGTGATGTGCGAGTAAGACCATGGCATAGATATGTGATTCCTATA
*
82527187 TATGTGCGTGAGTAAGACCAAGTTTAATATGTTGCCA
65 TATGTGC--GAGTAAGACCAAGTTTAATACGTTGCCA
* * **
82527224 TCGATATGTGATTCCGATATGTGATGTGCAAGTAAGACCATGGCATCTATATGTGATT-CTGATA
1 TCGAAATGTGATTCCGATATGTGATGTGCGAGTAAGACCATGGCATAGATATGTGATTCCT-ATA
* * * * *
82527288 TGTGTGCGAGTAAGTCCACGTTTTATACGTTGGCA
65 TATGTGCGAGTAAGACCAAGTTTAATACGTTGCCA
*
82527323 TCGAAATGTGATTCCGATATATG-TGTGCGAGTAA
1 TCGAAATGTGATTCCGATATGTGATGTGCGAGTAA
82527357 AACCCTGTCT
Statistics
Matches: 116, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
98 10 0.09
99 44 0.38
100 2 0.02
101 52 0.45
102 8 0.07
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.34
Consensus pattern (99 bp):
TCGAAATGTGATTCCGATATGTGATGTGCGAGTAAGACCATGGCATAGATATGTGATTCCTATAT
ATGTGCGAGTAAGACCAAGTTTAATACGTTGCCA
Found at i:82532358 original size:21 final size:21
Alignment explanation
Indices: 82532289--82532358 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
82532279 TATCACGAAC
82532289 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
* * * **
82532310 TCGGATGTCACATATATC-ATGAAC
1 TCAGA--CCACA-A-CTCAATGAGT
82532334 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
82532355 TCAG
1 TCAG
82532359 GTCACATATT
Statistics
Matches: 34, Mismatches: 10, Indels: 10
0.63 0.19 0.19
Matches are distributed among these distances:
20 2 0.06
21 13 0.38
22 4 0.12
23 4 0.12
24 9 0.26
25 2 0.06
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.23
Consensus pattern (21 bp):
TCAGACCACAACTCAATGAGT
Found at i:82532792 original size:16 final size:16
Alignment explanation
Indices: 82532771--82532803 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
82532761 ACATACTTTG
82532771 ATAAAATTACCATTTT
1 ATAAAATTACCATTTT
82532787 ATAAAATTACCATTTT
1 ATAAAATTACCATTTT
82532803 A
1 A
82532804 CCCCAAACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.42
Consensus pattern (16 bp):
ATAAAATTACCATTTT
Found at i:82539692 original size:13 final size:13
Alignment explanation
Indices: 82539674--82539698 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82539664 TCCATACCAA
82539674 TATCATATTTGTC
1 TATCATATTTGTC
82539687 TATCATATTTGT
1 TATCATATTTGT
82539699 TAACCTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.08, T:0.56
Consensus pattern (13 bp):
TATCATATTTGTC
Found at i:82540660 original size:45 final size:45
Alignment explanation
Indices: 82540588--82540678 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
82540578 CCAAAACATG
* * * *
82540588 TGTCATATATATCACGAGCTCAGACCACAACTCAATGAGTTCAGA
1 TGTCACATAAATCACGAACTCAAACCACAACTCAATGAGTTCAGA
*
82540633 TGTCACATAAATCATGAACTCAAACCACAACTCAATGAGTTCAGA
1 TGTCACATAAATCACGAACTCAAACCACAACTCAATGAGTTCAGA
82540678 T
1 T
82540679 CACATATTTC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.38, C:0.24, G:0.13, T:0.24
Consensus pattern (45 bp):
TGTCACATAAATCACGAACTCAAACCACAACTCAATGAGTTCAGA
Found at i:82540682 original size:21 final size:21
Alignment explanation
Indices: 82540607--82540682 Score: 55
Period size: 21 Copynumber: 3.5 Consensus size: 21
82540597 TATCACGAGC
82540607 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
* * **
82540628 TCAGATGTCACATAAATC-ATGAAC
1 TCAGA---C-CACAACTCAATGAGT
*
82540652 TCAAACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
*
82540673 TCAGATCACA
1 TCAGACCACA
82540683 TATTTCCTAG
Statistics
Matches: 39, Mismatches: 11, Indels: 10
0.65 0.18 0.17
Matches are distributed among these distances:
20 6 0.15
21 18 0.46
24 9 0.23
25 6 0.15
ACGTcount: A:0.41, C:0.26, G:0.12, T:0.21
Consensus pattern (21 bp):
TCAGACCACAACTCAATGAGT
Found at i:82542537 original size:45 final size:45
Alignment explanation
Indices: 82542482--82542572 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
82542472 CCAAAACATG
* *
82542482 TGTCATATATATCACAAACTCAGACCACAACTCAATGAGTTCAGA
1 TGTCACATATATCACAAACTCAAACCACAACTCAATGAGTTCAGA
** *
82542527 TGTCACATATATCATGAACTCAAACCACAGCTCAATGAGTTCAGA
1 TGTCACATATATCACAAACTCAAACCACAACTCAATGAGTTCAGA
82542572 T
1 T
82542573 CACATAGTTC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.25
Consensus pattern (45 bp):
TGTCACATATATCACAAACTCAAACCACAACTCAATGAGTTCAGA
Found at i:82546204 original size:18 final size:18
Alignment explanation
Indices: 82546177--82546219 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
82546167 TGTTAATTCA
82546177 AACATATAATAAATTAAC
1 AACATATAATAAATTAAC
* *
82546195 AACATTTAATATATTAAC
1 AACATATAATAAATTAAC
*
82546213 TACATAT
1 AACATAT
82546220 TATTATCAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (18 bp):
AACATATAATAAATTAAC
Found at i:82548432 original size:22 final size:22
Alignment explanation
Indices: 82548390--82548433 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
82548380 AAAGGACCAA
*
82548390 TTTGTAAAAATGTTATAAAATG
1 TTTGTAAAAATGTGATAAAATG
* *
82548412 TTTGTAAAAGTGTGATTAAATG
1 TTTGTAAAAATGTGATAAAATG
82548434 AAAAATGTGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (22 bp):
TTTGTAAAAATGTGATAAAATG
Found at i:82556520 original size:43 final size:43
Alignment explanation
Indices: 82556464--82556579 Score: 153
Period size: 43 Copynumber: 2.7 Consensus size: 43
82556454 GAAAGCACCA
82556464 CTAAAGAACGTGACCTTTAGCGGTG-TCTTTCACACAAATGCCG
1 CTAAAGAACGTGACCTTTAGCGGTGCT-TTTCACACAAATGCCG
* * * *
82556507 CTAAAAAATGTGACCTTTAGCGGTGCTTTTCATACAAATGTCG
1 CTAAAGAACGTGACCTTTAGCGGTGCTTTTCACACAAATGCCG
* * *
82556550 CTAAAGAACATGACCTTTAGCAGCGCTTTT
1 CTAAAGAACGTGACCTTTAGCGGTGCTTTT
82556580 ACATGAACAA
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 62 0.98
44 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (43 bp):
CTAAAGAACGTGACCTTTAGCGGTGCTTTTCACACAAATGCCG
Found at i:82562493 original size:9 final size:9
Alignment explanation
Indices: 82562479--82562545 Score: 64
Period size: 9 Copynumber: 7.0 Consensus size: 9
82562469 TAAGTATAAT
82562479 TAAGTTATG
1 TAAGTTATG
82562488 TAAGTTATG
1 TAAGTTATG
* *
82562497 ATATGATATATATA
1 -TA--A-GT-TATG
82562511 TAAGTTAT-
1 TAAGTTATG
82562519 TAAGTTATG
1 TAAGTTATG
82562528 TAAGTTATG
1 TAAGTTATG
82562537 TAAGTTATG
1 TAAGTTATG
82562546 ATATGATATG
Statistics
Matches: 49, Mismatches: 3, Indels: 12
0.77 0.05 0.19
Matches are distributed among these distances:
8 8 0.16
9 30 0.61
10 3 0.06
11 1 0.02
12 1 0.02
13 3 0.06
14 3 0.06
ACGTcount: A:0.37, C:0.00, G:0.18, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:82563245 original size:5 final size:5
Alignment explanation
Indices: 82563235--82563266 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
82563225 CATAATGTGA
82563235 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
82563267 GAATACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:82563260 original size:9 final size:9
Alignment explanation
Indices: 82563236--82563266 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
82563226 ATAATGTGAA
82563236 AAATAAAAT
1 AAATAAAAT
82563245 AAAATAAAAT
1 -AAATAAAAT
82563255 AAATAAAAT
1 AAATAAAAT
82563264 AAA
1 AAA
82563267 GAATACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:82567695 original size:5 final size:5
Alignment explanation
Indices: 82567685--82567716 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
82567675 CAATTTGTGA
82567685 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
82567717 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:82567710 original size:9 final size:9
Alignment explanation
Indices: 82567686--82567716 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
82567676 AATTTGTGAA
82567686 AAATAAAAT
1 AAATAAAAT
82567695 AAAATAAAAT
1 -AAATAAAAT
82567705 AAATAAAAT
1 AAATAAAAT
82567714 AAA
1 AAA
82567717 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:82570735 original size:43 final size:43
Alignment explanation
Indices: 82570677--82570781 Score: 174
Period size: 43 Copynumber: 2.4 Consensus size: 43
82570667 GGTTTAATCT
*
82570677 ATTGGCACTAGGTGTGCGATACAATTATAGCTTCGGCTAATTA
1 ATTGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTA
* *
82570720 ATTGGTACTAAGTGTGCGATACAATTATAGCTTCGGTTAATTA
1 ATTGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTA
*
82570763 ATTAGCACTAAGTGTGCGA
1 ATTGGCACTAAGTGTGCGA
82570782 GTTTATTGAA
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (43 bp):
ATTGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTA
Found at i:82572353 original size:17 final size:18
Alignment explanation
Indices: 82572326--82572373 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
82572316 GGCGTGTGAC
*
82572326 CTTTTAAAAG-TGGAAAA
1 CTTTTATAAGTTGGAAAA
* *
82572343 TTTTTATAAGTTTGAAAA
1 CTTTTATAAGTTGGAAAA
*
82572361 CTTTTATATGTTG
1 CTTTTATAAGTTG
82572374 TCAATTTGGT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
17 8 0.33
18 16 0.67
ACGTcount: A:0.35, C:0.04, G:0.15, T:0.46
Consensus pattern (18 bp):
CTTTTATAAGTTGGAAAA
Found at i:82572758 original size:18 final size:17
Alignment explanation
Indices: 82572706--82572756 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 17
82572696 AACAGATGGG
82572706 TTTGATTTGGGGAAAAT
1 TTTGATTTGGGGAAAAT
82572723 TTAATG-TTTAGGGG-AAAT
1 TT--TGATTT-GGGGAAAAT
82572741 TTTGATTTGGGGAAAA
1 TTTGATTTGGGGAAAA
82572757 ATAAGGGGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
16 6 0.21
17 8 0.28
18 9 0.31
19 6 0.21
ACGTcount: A:0.31, C:0.00, G:0.29, T:0.39
Consensus pattern (17 bp):
TTTGATTTGGGGAAAAT
Found at i:82572934 original size:41 final size:41
Alignment explanation
Indices: 82572885--82573061 Score: 225
Period size: 41 Copynumber: 4.4 Consensus size: 41
82572875 TTTGCAGCAG
* * * *
82572885 TTTT-AAAAATGCGCAGCTAATTCTCGATCTTTAGCGGTGC
1 TTTTCAAAAAAGCGCAGCTAATTCTCGATCTTTAGCAGCGT
*
82572925 TTTTCAAAAAAGCG-ATGCTAATTCTCAATCTTTAGCAGCGT
1 TTTTCAAAAAAGCGCA-GCTAATTCTCGATCTTTAGCAGCGT
*
82572966 TTTTCAAAAAAGCGCCGCTAATTCTCGATCTTTAGCAGCGT
1 TTTTCAAAAAAGCGCAGCTAATTCTCGATCTTTAGCAGCGT
* * * *
82573007 TTTTCAAAAAAGCGCCGGTAATTCTCGATCTTTAGCGGCAT
1 TTTTCAAAAAAGCGCAGCTAATTCTCGATCTTTAGCAGCGT
*
82573048 TTTTC-AGAAAGCGC
1 TTTTCAAAAAAGCGC
82573062 CACTAATGCC
Statistics
Matches: 123, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
40 13 0.11
41 110 0.89
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (41 bp):
TTTTCAAAAAAGCGCAGCTAATTCTCGATCTTTAGCAGCGT
Found at i:82573429 original size:8 final size:7
Alignment explanation
Indices: 82573416--82573484 Score: 50
Period size: 7 Copynumber: 9.3 Consensus size: 7
82573406 CAAAATCTAT
82573416 AACCCTTA
1 AACCC-TA
82573424 AACCCTA
1 AACCCTA
82573431 ATACCCT-
1 A-ACCCTA
82573438 AACCCTTAA
1 AACCC-T-A
*
82573447 AACCATA
1 AACCCTA
*
82573454 AACACTA
1 AACCCTA
82573461 AGACCCTA
1 A-ACCCTA
*
82573469 AACTCTA
1 AACCCTA
*
82573476 AACACTA
1 AACCCTA
82573483 AA
1 AA
82573485 TCTCAAGCCC
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
6 4 0.08
7 25 0.50
8 17 0.34
9 4 0.08
ACGTcount: A:0.46, C:0.33, G:0.01, T:0.19
Consensus pattern (7 bp):
AACCCTA
Found at i:82573461 original size:22 final size:22
Alignment explanation
Indices: 82573415--82573461 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
82573405 TCAAAATCTA
* *
82573415 TAACCCTTAAACCCTAATACCC
1 TAACCCTTAAACCATAATACAC
82573437 TAACCCTTAAAACCATAA-ACAC
1 TAACCCTT-AAACCATAATACAC
82573459 TAA
1 TAA
82573462 GACCCTAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.21
Consensus pattern (22 bp):
TAACCCTTAAACCATAATACAC
Found at i:82574125 original size:41 final size:41
Alignment explanation
Indices: 82574060--82574351 Score: 273
Period size: 41 Copynumber: 7.1 Consensus size: 41
82574050 TCGAAAATGG
* * * **
82574060 TTGCTCAACTTTTTA-TGGCTTTTGGACCAGAAACACCGCTA
1 TTGCTC-AGTTTTTAGTGGCGTTTGGACCAAAAATGCCGCTA
* * * *
82574101 TTGCTCAATTTTTAGCGGCATTTGGACCAAAAATGCCACTA
1 TTGCTCAGTTTTTAGTGGCGTTTGGACCAAAAATGCCGCTA
* * *** * *
82574142 TT-CTTAGTTTTTTGCCTCGTTTGTACCAAAAATGCCTCTA
1 TTGCTCAGTTTTTAGTGGCGTTTGGACCAAAAATGCCGCTA
* * * * *
82574182 TTGTTTAGTTTTTAGTGGTGTTTGGACCAAAAACGCCACTA
1 TTGCTCAGTTTTTAGTGGCGTTTGGACCAAAAATGCCGCTA
* * * *
82574223 TTGTTCAGTTTTTAGCGGCATTTGGAACAAAAATGCCGCTA
1 TTGCTCAGTTTTTAGTGGCGTTTGGACCAAAAATGCCGCTA
* * *
82574264 TTGCTCAGTTTTTAATGGCGTTTGGACAAAAAATGCCGTTA
1 TTGCTCAGTTTTTAGTGGCGTTTGGACCAAAAATGCCGCTA
* * *
82574305 TTGCTCAGTTTTTAGTGGCGTTTGGACTAGAAACGCCGCTAA
1 TTGCTCAGTTTTTAGTGGCGTTTGGACCAAAAATGCCGCT-A
82574347 TTGCT
1 TTGCT
82574352 ATAACATACC
Statistics
Matches: 205, Mismatches: 43, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
40 39 0.19
41 160 0.78
42 6 0.03
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (41 bp):
TTGCTCAGTTTTTAGTGGCGTTTGGACCAAAAATGCCGCTA
Found at i:82575710 original size:43 final size:44
Alignment explanation
Indices: 82575663--82575815 Score: 131
Period size: 42 Copynumber: 3.5 Consensus size: 44
82575653 TCCAAGATGT
*
82575663 GGTCTTACATGTAATCAAATATCGATGCC-ACTGTCCCAGACAG
1 GGTCTTACACGTAATCAAATATCGATGCCAACTGTCCCAGACAG
* * * *
82575706 GGTCTTACACG-AAGTCAAATA-CGATGCCGA-TGTCCTAAACAT
1 GGTCTTACACGTAA-TCAAATATCGATGCCAACTGTCCCAGACAG
* * *
82575748 GATCTTACACATAAATCACAAT-TCAATGCCAAC-GTCCCAGAC-G
1 GGTCTTACACGT-AATCA-AATATCGATGCCAACTGTCCCAGACAG
* *
82575791 TGGTCTTACACGAAATCACATATCG
1 -GGTCTTACACGTAATCAAATATCG
82575816 GAATCCTATG
Statistics
Matches: 85, Mismatches: 16, Indels: 18
0.71 0.13 0.15
Matches are distributed among these distances:
42 29 0.34
43 28 0.33
44 28 0.33
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.24
Consensus pattern (44 bp):
GGTCTTACACGTAATCAAATATCGATGCCAACTGTCCCAGACAG
Found at i:82578403 original size:25 final size:25
Alignment explanation
Indices: 82578375--82578463 Score: 83
Period size: 25 Copynumber: 3.6 Consensus size: 25
82578365 ATTAATCAGT
82578375 AAGCTCATAAGAGCCAATTATCGAG
1 AAGCTCATAAGAGCCAATTATCGAG
* * * *
82578400 AAGCTCCAGAA-ATTCAAATAAT-GAG
1 AAGCT-CATAAGA-GCCAATTATCGAG
* * *
82578425 AAGCTCGTGAGAGCCAAATATCGAG
1 AAGCTCATAAGAGCCAATTATCGAG
82578450 AAGCTCATAAGAGC
1 AAGCTCATAAGAGC
82578464 TGTGGCCTGT
Statistics
Matches: 47, Mismatches: 13, Indels: 8
0.69 0.19 0.12
Matches are distributed among these distances:
24 7 0.15
25 30 0.64
26 10 0.21
ACGTcount: A:0.42, C:0.19, G:0.21, T:0.18
Consensus pattern (25 bp):
AAGCTCATAAGAGCCAATTATCGAG
Found at i:82583480 original size:18 final size:18
Alignment explanation
Indices: 82583422--82583573 Score: 202
Period size: 18 Copynumber: 8.5 Consensus size: 18
82583412 ATGGAAATAT
*
82583422 AATCTTAGATATGATATGC
1 AATCTTAGATATGAT-TAC
*
82583441 AATCTTAAATATGA-TAC
1 AATCTTAGATATGATTAC
*
82583458 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
*
82583476 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
82583494 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
82583511 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
* *
82583528 AATCATAGATATGATTGC
1 AATCTTAGATATGATTAC
*
82583546 AATCATAGATATGATATAC
1 AATCTTAGATATGAT-TAC
82583565 AATCTTAGA
1 AATCTTAGA
82583574 AGATATGATT
Statistics
Matches: 121, Mismatches: 9, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
17 47 0.39
18 51 0.42
19 23 0.19
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:82583488 original size:35 final size:35
Alignment explanation
Indices: 82583422--82583573 Score: 216
Period size: 35 Copynumber: 4.3 Consensus size: 35
82583412 ATGGAAATAT
*
82583422 AATCTTAGATATGATATGCAATCTTAAATATGATAC
1 AATCTTAGATATGAT-TGCAATCTTAGATATGATAC
*
82583458 AATCTTAGATATGATTGCAATCTTAGATATGATTGC
1 AATCTTAGATATGATTGCAATCTTAGATATGA-TAC
*
82583494 AATCTTAGATATGA-TACAATCTTAGATATGATAC
1 AATCTTAGATATGATTGCAATCTTAGATATGATAC
* *
82583528 AATCATAGATATGATTGCAATCATAGATATGATATAC
1 AATCTTAGATATGATTGCAATCTTAGATATG--ATAC
82583565 AATCTTAGA
1 AATCTTAGA
82583574 AGATATGATT
Statistics
Matches: 104, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
34 15 0.14
35 46 0.44
36 31 0.30
37 12 0.12
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (35 bp):
AATCTTAGATATGATTGCAATCTTAGATATGATAC
Found at i:82583527 original size:70 final size:72
Alignment explanation
Indices: 82583422--82583573 Score: 245
Period size: 70 Copynumber: 2.1 Consensus size: 72
82583412 ATGGAAATAT
* *
82583422 AATCTTAGATATGATATGCAATCTTAAATATGATACAATCTTAGATATGATTGCAATCTTAGATA
1 AATCTTAGATATGATA-GCAATCTTAAATATGATACAATCATAGATATGATTGCAATCATAGATA
*
82583487 TGAT-TGC
65 TGATATAC
*
82583494 AATCTTAGATATGATA-CAATCTTAGATATGATACAATCATAGATATGATTGCAATCATAGATAT
1 AATCTTAGATATGATAGCAATCTTAAATATGATACAATCATAGATATGATTGCAATCATAGATAT
82583558 GATATAC
66 GATATAC
82583565 AATCTTAGA
1 AATCTTAGA
82583574 AGATATGATT
Statistics
Matches: 75, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
70 48 0.64
71 11 0.15
72 16 0.21
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (72 bp):
AATCTTAGATATGATAGCAATCTTAAATATGATACAATCATAGATATGATTGCAATCATAGATAT
GATATAC
Found at i:82585283 original size:20 final size:21
Alignment explanation
Indices: 82585258--82585296 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
82585248 CTCCCGTTTT
*
82585258 CATTTTTTAAAA-TCGATTCC
1 CATTTTTCAAAACTCGATTCC
82585278 CATTTTTCAAAACTCGATT
1 CATTTTTCAAAACTCGATT
82585297 AAAAAATGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.31, C:0.21, G:0.05, T:0.44
Consensus pattern (21 bp):
CATTTTTCAAAACTCGATTCC
Found at i:82595030 original size:40 final size:40
Alignment explanation
Indices: 82594993--82595215 Score: 278
Period size: 40 Copynumber: 5.6 Consensus size: 40
82594983 GCTACTCGTT
*
82594993 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
82595033 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
82595073 CAAATGCCTTCGGGACTTAACCCAGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GGTTATAGTAACTCGCA
* *
82595113 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
82595152 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
82595193 CAAA-GCCTTC-GGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
82595216 ACATCATTCA
Statistics
Matches: 162, Mismatches: 14, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
38 3 0.02
39 38 0.23
40 109 0.67
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:82595171 original size:119 final size:119
Alignment explanation
Indices: 82594995--82595209 Score: 303
Period size: 119 Copynumber: 1.8 Consensus size: 119
82594985 TACTCGTTCA
* *
82594995 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
*
82595060 ATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTC-GGACTTAACCCAGATTTAGTAACTCGCACC
* *
82595115 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
* *
82595177 ATATGGTCACTTAGCACAAAGCCTTCGGACTTA
64 ATATAGTAACTTAGCACAAAGCCTTCGGACTTA
82595210 GCCCGGACAT
Statistics
Matches: 85, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
118 11 0.13
119 54 0.64
120 20 0.24
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGACTTAACCCAGATTTAGTAACTCGCACC
Found at i:82595201 original size:79 final size:79
Alignment explanation
Indices: 82594993--82595216 Score: 247
Period size: 79 Copynumber: 2.8 Consensus size: 79
82594983 GCTACTCGTT
* * * * *
82594993 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCAGATATAGTAACTAGCACAAA-GCCTTCGGG-CTTAGCCCGG
*
82595058 -TTATAGTAACTCGCA
64 AATATAGTAACTCGCA
* * *
82595073 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCAGATATAGTAACTAGCA-CAAAGCCTTCGGGCTTAGCCCGGA
82595138 AT-TAGTAACTCGCA
65 ATATAGTAACTCGCA
** * * * *
82595152 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGACTTAGCCCGG
1 CAAATGCCTTCGGGA-CTTAACCCAGATATAGTAAC-TAGCACAAAGCCTTCGGGCTTAGCCCGG
82595216 A
64 A
82595217 CATCATTCAA
Statistics
Matches: 124, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
78 3 0.02
79 69 0.56
80 49 0.40
81 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCAGATATAGTAACTAGCACAAAGCCTTCGGGCTTAGCCCGGAA
TATAGTAACTCGCA
Found at i:82602426 original size:40 final size:40
Alignment explanation
Indices: 82602351--82602571 Score: 260
Period size: 40 Copynumber: 5.6 Consensus size: 40
82602341 GCTACTCGTT
*
82602351 CAAATGCCTTCGGGACATAG-CCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
82602390 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
82602430 CAAATGCCTTCGGGACTTAACCCAGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GGTTATAGTAACTCGCA
* *
82602470 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
82602509 CAAATGCCTTC-GGATCTTAGTCC-GATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
82602549 CAAA-GCCTTC-GGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
82602572 ACATCATTCA
Statistics
Matches: 159, Mismatches: 14, Indels: 18
0.83 0.07 0.09
Matches are distributed among these distances:
38 10 0.06
39 64 0.40
40 82 0.52
41 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:82602488 original size:79 final size:79
Alignment explanation
Indices: 82602351--82602572 Score: 251
Period size: 79 Copynumber: 2.8 Consensus size: 79
82602341 GCTACTCGTT
* *
82602351 CAAATGCCTTCGGGACATAGCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG-
1 CAAATGCCTTCGGGACATACCCGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
82602415 TTATAGTAACTCGCA
66 AT-TAGTAACTCGCA
* *
82602430 CAAATGCCTTCGGGACTTAACCCAGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACAT-ACCC-GATTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
82602493 GAATTAGTAACTCGCA
64 GAATTAGTAACTCGCA
* * * * *
82602509 CAAATGCCTTC-GGATCTTAGTCCGA-TATGGTCACTTAGCACAAA-GCCTTC-GGACTTAGCCC
1 CAAATGCCTTCGGGA-CATA-CCCGATTATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
82602570 GGA
63 GGA
82602573 CATCATTCAA
Statistics
Matches: 125, Mismatches: 10, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
77 3 0.02
78 28 0.22
79 62 0.50
80 29 0.23
81 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACATACCCGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:82605437 original size:5 final size:6
Alignment explanation
Indices: 82605424--82605462 Score: 51
Period size: 6 Copynumber: 6.2 Consensus size: 6
82605414 ATAATTTAAT
*
82605424 AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA A
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA A
82605463 GAACATATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
6 24 0.83
8 5 0.17
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.18
Consensus pattern (6 bp):
AAATAA
Found at i:82605498 original size:9 final size:9
Alignment explanation
Indices: 82605484--82605569 Score: 95
Period size: 9 Copynumber: 9.6 Consensus size: 9
82605474 TTTACACAAA
*
82605484 TAATTTGGT
1 TAATTCGGT
*
82605493 TAATTTGGT
1 TAATTCGGT
82605502 TAATTCGAG-
1 TAATTCG-GT
82605511 TAATTCAGG-
1 TAATTC-GGT
*
82605520 TAATTCGGG
1 TAATTCGGT
82605529 TAATTCGGT
1 TAATTCGGT
*
82605538 TAATTCGAT
1 TAATTCGGT
*
82605547 TAATTCGAT
1 TAATTCGGT
82605556 TAATTCGGT
1 TAATTCGGT
82605565 TAATT
1 TAATT
82605570 TTATACTTAT
Statistics
Matches: 70, Mismatches: 4, Indels: 6
0.88 0.05 0.08
Matches are distributed among these distances:
8 2 0.03
9 66 0.94
10 2 0.03
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:82617816 original size:30 final size:30
Alignment explanation
Indices: 82617782--82617841 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
82617772 ATTTAATACG
*
82617782 AACTTTAGAAAAATTACACTTTTTCCCCTA
1 AACTTTAGAAAAATTACACTTTTGCCCCTA
* * *
82617812 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAGAAAAATTACACTTTTGCCCCTA
82617842 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.05, T:0.38
Consensus pattern (30 bp):
AACTTTAGAAAAATTACACTTTTGCCCCTA
Found at i:82620111 original size:27 final size:28
Alignment explanation
Indices: 82620081--82620170 Score: 123
Period size: 27 Copynumber: 3.3 Consensus size: 28
82620071 TTTAGTTTAC
82620081 TAAAATTACTGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATACCCTTAGATTTG
* *
82620108 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACTGAAATACCCTTAGATTTG
* *
82620135 TAAAATTACTGAAATA-CCTTCGACTTG
1 TAAAATTACTGAAATACCCTTAGATTTG
82620162 TAAAATTAC
1 TAAAATTAC
82620171 CAAAGTTCCC
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
26 4 0.07
27 53 0.93
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (28 bp):
TAAAATTACTGAAATACCCTTAGATTTG
Found at i:82620186 original size:54 final size:54
Alignment explanation
Indices: 82620076--82620197 Score: 131
Period size: 54 Copynumber: 2.2 Consensus size: 54
82620066 AATACTTTAG
* * *
82620076 TTTACTAAAATTACTGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGA
1 TTTA-TAAAATTACTGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGA
* * * *
82620131 TTTGTAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTTCCCCCGA
1 TTTATAAAATTACTGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGA
*
82620185 TTTATAGAATTAC
1 TTTATAAAATTAC
82620198 CGTTTTACCC
Statistics
Matches: 56, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
53 8 0.14
54 45 0.80
55 3 0.05
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.34
Consensus pattern (54 bp):
TTTATAAAATTACTGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGA
Found at i:82620387 original size:27 final size:27
Alignment explanation
Indices: 82620182--82620387 Score: 250
Period size: 27 Copynumber: 7.6 Consensus size: 27
82620172 AAAGTTCCCC
* * *
82620182 CGATTTATAGAATTACCGTTTTACCCC
1 CGATTTACAGAATTACTGTTTTACCCT
* * *
82620209 CAATTTACATAATTACTGTTTTACCCC
1 CGATTTACAGAATTACTGTTTTACCCT
* *
82620236 CGATTTACATAATTACAGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* * *
82620263 TGATTTACAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* **
82620290 CGATTTATAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* *
82620317 CGATTTATAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
82620344 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
82620371 CGATTTACAAAATTACT
1 CGATTTACAGAATTACT
82620388 AAAATACCCT
Statistics
Matches: 159, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 159 1.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACTGTTTTACCCT
Found at i:82620395 original size:27 final size:27
Alignment explanation
Indices: 82620365--82620529 Score: 140
Period size: 27 Copynumber: 6.1 Consensus size: 27
82620355 ATTACTGTTT
* *
82620365 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * *
82620392 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
82620419 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* * *
82620446 TACCCT-TAGTTTGTGAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* *
82620473 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
82620500 TACCC-CTGATTTACAAAGTTA-CAGAAA
1 TACCCTC-GATTTATAAAATTACCA-AAA
82620527 TAC
1 TAC
82620530 TCTTGACTTT
Statistics
Matches: 118, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
26 3 0.03
27 114 0.97
28 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:82620397 original size:81 final size:81
Alignment explanation
Indices: 82620183--82620388 Score: 279
Period size: 81 Copynumber: 2.5 Consensus size: 81
82620173 AAGTTCCCCC
* * * * * * *
82620183 GATTTATAGAATTACCGTTTTACCCCCAATTTACATAATTACTGTTTTACCCCCGATTTACATAA
1 GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAA
82620248 TTACAGTTTTACCCTT
66 TTACAGTTTTACCCTT
* * * * *
82620264 GATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAA
1 GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAA
82620329 TTACTA-TTTTACCCTT
66 TTAC-AGTTTTACCCTT
*
82620345 GATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTA
1 GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTA
82620389 AAATACCCTT
Statistics
Matches: 108, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
81 107 0.99
82 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (81 bp):
GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAA
TTACAGTTTTACCCTT
Found at i:82620423 original size:54 final size:54
Alignment explanation
Indices: 82620365--82620504 Score: 201
Period size: 54 Copynumber: 2.6 Consensus size: 54
82620355 ATTACTGTTT
* ** * *
82620365 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
* *
82620419 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTAGTTTGTGAAATTACCAAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
82620473 TACCCTCAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTGTAAAATTACCAAAATACCC
82620505 CTGATTTACA
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
53 1 0.01
54 74 0.97
55 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.07, T:0.31
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
Found at i:82620423 original size:81 final size:81
Alignment explanation
Indices: 82620122--82620521 Score: 230
Period size: 81 Copynumber: 4.9 Consensus size: 81
82620112 AATACTGAAA
** ** * * * * * **
82620122 TACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTTCCCCCGATT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGATT
* *
82620187 TATAGAATTACCGTTT
66 TACAAAATTACCGTTT
* * * ***** * * * ***
82620203 TACCCCCAATTTACATAATTACTGTTTTACCCCCGATTTACATAATTA-CAGTTTTACCCTTGAT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAAAATTACCA-AAATACCCTTGAT
82620267 TTACAAAATTACCGTTT
65 TTACAAAATTACCGTTT
* * *** * * ***
82620284 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGATT
* *
82620349 TACAGAATTACTGTTT
66 TACAAAATTACCGTTT
* * * * *
82620365 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCT-AGT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGA-T
** ****
82620429 TTGTAAAATTACCAAAA
65 TTACAAAATTACCGTTT
* *** * * *
82620446 TACCCT-TAGTTTGTGAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGAT
1 TACCCTCGA-TTTACAAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGAT
*
82620510 TTACAAAGTTAC
65 TTACAAAATTAC
82620522 AGAAATACTC
Statistics
Matches: 246, Mismatches: 68, Indels: 10
0.76 0.21 0.03
Matches are distributed among these distances:
80 4 0.02
81 240 0.98
82 2 0.01
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGATT
TACAAAATTACCGTTT
Found at i:82620712 original size:27 final size:27
Alignment explanation
Indices: 82620635--82620712 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
82620625 AAATGACTAA
*
82620635 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTATAT-GGTAAAATGACCGT
* *
82620662 AA-AGCCCCTATAGGGTAAAGTGACCGT
1 AATA-CCCCTATATGGTAAAATGACCGT
*
82620689 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTATATGGTAAAATGAC
82620713 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (27 bp):
AATACCCCTATATGGTAAAATGACCGT
Found at i:82621611 original size:25 final size:26
Alignment explanation
Indices: 82621514--82621611 Score: 162
Period size: 26 Copynumber: 3.8 Consensus size: 26
82621504 GAGGAAGTGC
82621514 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
82621540 AAAATGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
82621566 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
82621592 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
82621612 ATTAAAAAGG
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 10 0.15
26 57 0.85
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:82621815 original size:42 final size:42
Alignment explanation
Indices: 82621756--82621847 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
82621746 TAGTCTCCCC
* ** *
82621756 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATACTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATACTG
*
82621798 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATACTG
82621840 AAATGGGC
1 AAATGGGC
82621848 CTATAGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATACTG
Found at i:82621909 original size:31 final size:31
Alignment explanation
Indices: 82621871--82621949 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
82621861 CGTTTACAGT
*
82621871 AAAGGCTTCAGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
* *
82621902 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
82621933 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
82621950 AACCGTTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:82625463 original size:16 final size:16
Alignment explanation
Indices: 82625436--82625475 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
82625426 TATATATGCA
82625436 AATAAA-AAATAAGTG
1 AATAAATAAATAAGTG
82625451 AATAAATAAATAAGTG
1 AATAAATAAATAAGTG
*
82625467 AACAAATAA
1 AATAAATAA
82625476 GTGAAGAACC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.68, C:0.03, G:0.10, T:0.20
Consensus pattern (16 bp):
AATAAATAAATAAGTG
Found at i:82628976 original size:25 final size:25
Alignment explanation
Indices: 82628929--82628977 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
82628919 TTGTTTTTGA
* * *
82628929 TAGTATATCCTGAAAGTAATATAGG
1 TAGTATATACTAAAACTAATATAGG
*
82628954 TAGTATATACTAAAACTACTATAG
1 TAGTATATACTAAAACTAATATAG
82628978 ATAGACTGTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (25 bp):
TAGTATATACTAAAACTAATATAGG
Found at i:82634377 original size:48 final size:48
Alignment explanation
Indices: 82634324--82634568 Score: 285
Period size: 48 Copynumber: 5.1 Consensus size: 48
82634314 ATGTGAGTAT
* * * *
82634324 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCATTGATA
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATA
* * *
82634372 AGAGA-TCATGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATA
1 TGAGAGCCA-GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATA
* * * *
82634420 TGTGAGCTAGTGTAAGACCATGTCTAGGACATGGCATTGGCATTGATA
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATA
* * *
82634468 TGTGAGCCAGTGTAAGACCATGCCTGGGACATGGCATTGGCATTGATA
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATA
* * * * * * *
82634516 TGTGTGCTAGTATAAGACCATGTTTGGGACATGGCATCGGCACTGACA
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATA
82634564 TGAGA
1 TGAGA
82634569 CTTTGTATAA
Statistics
Matches: 169, Mismatches: 26, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
47 1 0.01
48 167 0.99
49 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (48 bp):
TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATA
Found at i:82634463 original size:96 final size:96
Alignment explanation
Indices: 82634333--82634557 Score: 317
Period size: 96 Copynumber: 2.3 Consensus size: 96
82634323 TTGAGATCCC
* * * *
82634333 GTGTAAGACCATATCTGGGATATGGCATCGGCATTGATAAGAGA-TCATGTGTAAGACCATGTCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATAAGAGAGCCA-GTGTAAGACCATGCCT
*
82634397 GGGACATGGCATCGGCGTTGATATGTGAGCTA
65 GGGACATGGCATCGGCATTGATATGTGAGCTA
* * * *
82634429 GTGTAAGACCATGTCTAGGACATGGCATTGGCATTGATATGTGAGCCAGTGTAAGACCATGCCTG
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATAAGAGAGCCAGTGTAAGACCATGCCTG
* *
82634494 GGACATGGCATTGGCATTGATATGTGTGCTA
66 GGACATGGCATCGGCATTGATATGTGAGCTA
* *
82634525 GTATAAGACCATGTTTGGGACATGGCATCGGCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCA
82634558 CTGACATGAG
Statistics
Matches: 113, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
96 111 0.98
97 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.27
Consensus pattern (96 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATAAGAGAGCCAGTGTAAGACCATGCCTG
GGACATGGCATCGGCATTGATATGTGAGCTA
Found at i:82634577 original size:48 final size:47
Alignment explanation
Indices: 82634333--82634602 Score: 281
Period size: 48 Copynumber: 5.6 Consensus size: 47
82634323 TTGAGATCCC
* * * *
82634333 GTGTAAGACCATATCTGGGATATGGCATCGGCATTGATAAGAGA-TCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGACT-A
*
82634380 TGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCTA
1 -GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGA-CTA
* * *
82634429 GTGTAAGACCATGTCTAGGACATGGCATTGGCATTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGA-CTA
* * *
82634477 GTGTAAGACCATGCCTGGGACATGGCATTGGCATTGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTG-ACTA
* * * * * *
82634525 GTATAAGACCATGTTTGGGACATGGCATCGGCACTGACATGAGACTTT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGAC-TA
* * * * *
82634573 GTATAAGACCATATCCGGGATATGACATCG
1 GTGTAAGACCATGTCTGGGACATGGCATCG
82634603 ATATGTAGAT
Statistics
Matches: 191, Mismatches: 27, Indels: 8
0.85 0.12 0.04
Matches are distributed among these distances:
47 1 0.01
48 188 0.98
49 1 0.01
50 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (47 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGACTA
Found at i:82637731 original size:26 final size:27
Alignment explanation
Indices: 82637695--82637747 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
82637685 TGTCAGCTAG
* *
82637695 TGAAATTTTAA-TGTTCGAATGTATGC
1 TGAAATTTTAAGTGTCCGAATGCATGC
*
82637721 TGAATTTTTAAGTGTCCGAATGCATGC
1 TGAAATTTTAAGTGTCCGAATGCATGC
82637748 CAGAATTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (27 bp):
TGAAATTTTAAGTGTCCGAATGCATGC
Found at i:82647377 original size:25 final size:25
Alignment explanation
Indices: 82647343--82647392 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
82647333 TACCACCTGA
*
82647343 ATTAGAGAAGATTCATGATGTGTTC
1 ATTAAAGAAGATTCATGATGTGTTC
82647368 ATTAAAGAAGATTCATGATGTGTTC
1 ATTAAAGAAGATTCATGATGTGTTC
82647393 CACGTATCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.36
Consensus pattern (25 bp):
ATTAAAGAAGATTCATGATGTGTTC
Found at i:82655976 original size:41 final size:41
Alignment explanation
Indices: 82655907--82656091 Score: 194
Period size: 41 Copynumber: 4.5 Consensus size: 41
82655897 AAGAATATTG
** * * *
82655907 CTGAATTGCACATAAATGCCCCTTTTTGTACTTTGGTACCC
1 CTGAATTGCACATACGTGCCCCTATTTGTACTTCGATACCC
* *
82655948 CTAAATTGCACATACGTGCCTCTATTTGTACTTC-AGTACCC
1 CTGAATTGCACATACGTGCCCCTATTTGTACTTCGA-TACCC
* *
82655989 CTGAATTGCACATATGTGTCCCT-TATTGTACTTCGATACCC
1 CTGAATTGCACATACGTGCCCCTAT-TTGTACTTCGATACCC
* * * * * * *
82656030 ATTAATAGCACATGCATGCCCCTATTTATACTTCGATACCT
1 CTGAATTGCACATACGTGCCCCTATTTGTACTTCGATACCC
82656071 CTGAATTGCACATACGTGCCC
1 CTGAATTGCACATACGTGCCC
82656092 TTGTTTAGAC
Statistics
Matches: 115, Mismatches: 25, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
40 1 0.01
41 112 0.97
42 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.14, T:0.34
Consensus pattern (41 bp):
CTGAATTGCACATACGTGCCCCTATTTGTACTTCGATACCC
Found at i:82656104 original size:82 final size:82
Alignment explanation
Indices: 82655907--82656091 Score: 219
Period size: 82 Copynumber: 2.3 Consensus size: 82
82655897 AAGAATATTG
* * * * * * *
82655907 CTGAATTGCACATAAATGCCCCTTTTTGTACTTTGGTACCCCTAAATTGCACATACGTGCCTCTA
1 CTGAATTGCACATAAGTGCCCCTTTTTGTACTTCGATACCCATAAATAGCACATACATGCCCCTA
*
82655972 TTTGTACTTCAGTACCC
66 TTTATACTTCAGTACCC
* * * * *
82655989 CTGAATTGCACATATGTGTCCCTTATTGTACTTCGATACCCATTAATAGCACATGCATGCCCCTA
1 CTGAATTGCACATAAGTGCCCCTTTTTGTACTTCGATACCCATAAATAGCACATACATGCCCCTA
*
82656054 TTTATACTTC-GATACCT
66 TTTATACTTCAG-TACCC
*
82656071 CTGAATTGCACATACGTGCCC
1 CTGAATTGCACATAAGTGCCC
82656092 TTGTTTAGAC
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
81 1 0.01
82 85 0.99
ACGTcount: A:0.24, C:0.28, G:0.14, T:0.34
Consensus pattern (82 bp):
CTGAATTGCACATAAGTGCCCCTTTTTGTACTTCGATACCCATAAATAGCACATACATGCCCCTA
TTTATACTTCAGTACCC
Found at i:82656574 original size:13 final size:13
Alignment explanation
Indices: 82656558--82656598 Score: 61
Period size: 13 Copynumber: 3.4 Consensus size: 13
82656548 ATTTTTACAT
82656558 TTTAGTGATAATA
1 TTTAGTGATAATA
82656571 TTTA-TGAT--TA
1 TTTAGTGATAATA
82656581 TTTAGTGATAATA
1 TTTAGTGATAATA
82656594 TTTAG
1 TTTAG
82656599 GAAAAATCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 6 0.24
11 4 0.16
12 4 0.16
13 11 0.44
ACGTcount: A:0.34, C:0.00, G:0.15, T:0.51
Consensus pattern (13 bp):
TTTAGTGATAATA
Found at i:82672535 original size:41 final size:41
Alignment explanation
Indices: 82672475--82672603 Score: 168
Period size: 41 Copynumber: 3.1 Consensus size: 41
82672465 GTCTGTCACA
*
82672475 CTTTGTGCCTAGCAGGCTTTGTGCCGGTGTATATTACCAGG
1 CTTTGTGCCTAGCAGGCTTTGTGCCGGTGTATATTATCAGG
* * ***
82672516 CTTTGTGTCTAGCAAGCTTTGTGCTAATGTATATTATCAGG
1 CTTTGTGCCTAGCAGGCTTTGTGCCGGTGTATATTATCAGG
* * * *
82672557 CTTTGTACCAAGCAGGCTTCGTGCCGGTGTATATTATTAGG
1 CTTTGTGCCTAGCAGGCTTTGTGCCGGTGTATATTATCAGG
82672598 CTTTGT
1 CTTTGT
82672604 TGTTGGTGTA
Statistics
Matches: 73, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 73 1.00
ACGTcount: A:0.18, C:0.19, G:0.26, T:0.38
Consensus pattern (41 bp):
CTTTGTGCCTAGCAGGCTTTGTGCCGGTGTATATTATCAGG
Found at i:82672657 original size:41 final size:41
Alignment explanation
Indices: 82672608--82672705 Score: 110
Period size: 41 Copynumber: 2.4 Consensus size: 41
82672598 CTTTGTTGTT
* *
82672608 GGTGTATATTATCAGGCTTTTTGCCTAGCAGGATT-TGTGCC
1 GGTGTATATTATCAGGCTTTGTGCCTAACAGGATTCT-TGCC
** * *
82672649 GGTGTATATTATCAAACTTTGTGCCTAACAGGCTTCTTGCT
1 GGTGTATATTATCAGGCTTTGTGCCTAACAGGATTCTTGCC
82672690 GGTGTAT-TATATCAGG
1 GGTGTATAT-TATCAGG
82672706 TAACTTGTAC
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
40 1 0.02
41 45 0.96
42 1 0.02
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.39
Consensus pattern (41 bp):
GGTGTATATTATCAGGCTTTGTGCCTAACAGGATTCTTGCC
Found at i:82672669 original size:67 final size:67
Alignment explanation
Indices: 82672543--82672670 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 67
82672533 TTTGTGCTAA
* * **
82672543 TGTATATTATCAGGCTTTGTACCAAGCAGGCTTCGTGCCGGTGTATATTATTAGGCTTTGTTGTT
1 TGTATATTATCAGGCTTTGTACCAAGCAGGATTCGTGCCGGTGTATATTATCAAACTTTGTTGTT
82672608 GG
66 GG
* * * *
82672610 TGTATATTATCAGGCTTTTTGCCTAGCAGGATTTGTGCCGGTGTATATTATCAAACTTTGT
1 TGTATATTATCAGGCTTTGTACCAAGCAGGATTCGTGCCGGTGTATATTATCAAACTTTGT
82672671 GCCTAACAGG
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
67 53 1.00
ACGTcount: A:0.20, C:0.15, G:0.24, T:0.41
Consensus pattern (67 bp):
TGTATATTATCAGGCTTTGTACCAAGCAGGATTCGTGCCGGTGTATATTATCAAACTTTGTTGTT
GG
Found at i:82672694 original size:108 final size:108
Alignment explanation
Indices: 82672500--82672696 Score: 261
Period size: 108 Copynumber: 1.8 Consensus size: 108
82672490 GCTTTGTGCC
* * * **
82672500 GGTGTATATTACCAGGCTTTGTGTCTAGCAAGCTTTGTGCTAATGTATATTATCAGGCTTTGTAC
1 GGTGTATATTACCAGGCTTTGTGCCTAGCAAGATTTGTGCCAATGTATATTATCAAACTTTGTAC
82672565 CAAGCAGGCTTCGTGCCGGTGTATATTATTAGGCTTTGTTGTT
66 CAAGCAGGCTTCGTGCCGGTGTATATTATTAGGCTTTGTTGTT
* * * ** *
82672608 GGTGTATATTATCAGGCTTTTTGCCTAGCAGGATTTGTGCCGGTGTATATTATCAAACTTTGTGC
1 GGTGTATATTACCAGGCTTTGTGCCTAGCAAGATTTGTGCCAATGTATATTATCAAACTTTGTAC
* *
82672673 CTAA-CAGGCTTCTTGCTGGTGTAT
66 C-AAGCAGGCTTCGTGCCGGTGTAT
82672697 TATATCAGGT
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
108 73 0.97
109 2 0.03
ACGTcount: A:0.19, C:0.16, G:0.25, T:0.40
Consensus pattern (108 bp):
GGTGTATATTACCAGGCTTTGTGCCTAGCAAGATTTGTGCCAATGTATATTATCAAACTTTGTAC
CAAGCAGGCTTCGTGCCGGTGTATATTATTAGGCTTTGTTGTT
Found at i:82675659 original size:36 final size:36
Alignment explanation
Indices: 82675612--82675686 Score: 141
Period size: 36 Copynumber: 2.1 Consensus size: 36
82675602 ACTGCAAAAA
*
82675612 GAAAGTAACTTAAAACATTCAGTCACATATATTTAT
1 GAAAGTAACTTAAAACATTCAGTCACATATATTCAT
82675648 GAAAGTAACTTAAAACATTCAGTCACATATATTCAT
1 GAAAGTAACTTAAAACATTCAGTCACATATATTCAT
82675684 GAA
1 GAA
82675687 TCATGTCTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.31
Consensus pattern (36 bp):
GAAAGTAACTTAAAACATTCAGTCACATATATTCAT
Found at i:82678957 original size:18 final size:18
Alignment explanation
Indices: 82678910--82678958 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
82678900 CTTTGCCTAT
*
82678910 TGCAGTAACAATAAACAG
1 TGCAGTAACAGTAAACAG
*
82678928 TGCAGTAACAGTAATCAG
1 TGCAGTAACAGTAAACAG
*
82678946 TGCAGTAGCAGTA
1 TGCAGTAACAGTA
82678959 TACAAATCCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.20
Consensus pattern (18 bp):
TGCAGTAACAGTAAACAG
Found at i:82679305 original size:27 final size:26
Alignment explanation
Indices: 82679274--82679370 Score: 108
Period size: 27 Copynumber: 3.7 Consensus size: 26
82679264 CATCACATAG
*
82679274 GGGCAAAAGAGTCATCTTACCATATAA
1 GGGCAAAATAGTCAT-TTACCATATAA
82679301 GGGCAAAATAGTCATTTTACC-TCATAA
1 GGGCAAAATAGTCA-TTTACCAT-ATAA
* * *
82679328 AGGCAAAACAATCATTTACCACT-TAA
1 GGGCAAAATAGTCATTTACCA-TATAA
82679354 GGGCAAAATAGTCATTT
1 GGGCAAAATAGTCATTT
82679371 TATTAACTAA
Statistics
Matches: 59, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
26 24 0.41
27 33 0.56
28 2 0.03
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (26 bp):
GGGCAAAATAGTCATTTACCATATAA
Found at i:82679381 original size:27 final size:26
Alignment explanation
Indices: 82679265--82679383 Score: 80
Period size: 27 Copynumber: 4.4 Consensus size: 26
82679255 ATATATATAC
* * *
82679265 ATCACATAGGGGCAAAAGAGTCATCTT
1 ATCAC-TAAGGGCAAAATAGTCATTTT
* *
82679292 ACCATATAAGGGCAAAATAGTCATTTT
1 ATCA-CTAAGGGCAAAATAGTCATTTT
* * *
82679319 ACCTCA-TAAAGGCAAAACAATCA-TTT
1 A--TCACTAAGGGCAAAATAGTCATTTT
*
82679345 ACCACTTAAGGGCAAAATAGTCATTTT
1 ATCAC-TAAGGGCAAAATAGTCATTTT
*
82679372 ATTAACTAAGGG
1 A-TCACTAAGGG
82679384 TCTAGGCACA
Statistics
Matches: 70, Mismatches: 15, Indels: 14
0.71 0.15 0.14
Matches are distributed among these distances:
24 2 0.03
26 18 0.26
27 46 0.66
28 2 0.03
29 2 0.03
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.26
Consensus pattern (26 bp):
ATCACTAAGGGCAAAATAGTCATTTT
Found at i:82679499 original size:18 final size:18
Alignment explanation
Indices: 82679466--82679516 Score: 70
Period size: 17 Copynumber: 2.9 Consensus size: 18
82679456 ACAGTGAAAA
82679466 TGGGCCCA-AAGCCCATG
1 TGGGCCCACAAGCCCATG
*
82679483 TGGGCCCACACGCCCATG
1 TGGGCCCACAAGCCCATG
82679501 T-GGCCCACATAGCCCA
1 TGGGCCCACA-AGCCCA
82679517 GAAATGGCCT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
17 16 0.53
18 14 0.47
ACGTcount: A:0.22, C:0.41, G:0.25, T:0.12
Consensus pattern (18 bp):
TGGGCCCACAAGCCCATG
Found at i:82681924 original size:57 final size:57
Alignment explanation
Indices: 82681851--82681971 Score: 145
Period size: 57 Copynumber: 2.1 Consensus size: 57
82681841 AATCATTTAT
* * *
82681851 CATTTCCATTTCCATTTTGGAGAAAACCACATTCGTTTCCAAATGATTT-TATTTCTC
1 CATTTCCATTTCCATTTTCGAGAAAACCACAATCATTTCCAAATG-TTTCTATTTCTC
* * ** *
82681908 CATTTTCATTTTCATTTTCGAGAAAACCTTAATCATTTCCAAATGTTTCCTTTTTCTC
1 CATTTCCATTTCCATTTTCGAGAAAACCACAATCATTTCCAAATGTTT-CTATTTCTC
82681966 CATTTC
1 CATTTC
82681972 GCCATTTTTA
Statistics
Matches: 53, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
56 3 0.06
57 38 0.72
58 12 0.23
ACGTcount: A:0.25, C:0.23, G:0.07, T:0.45
Consensus pattern (57 bp):
CATTTCCATTTCCATTTTCGAGAAAACCACAATCATTTCCAAATGTTTCTATTTCTC
Found at i:82683728 original size:93 final size:93
Alignment explanation
Indices: 82683616--82683787 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
82683606 GCCCATAAGT
* *
82683616 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82683681 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
82683709 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
82683774 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
82683788 CAAACATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:82683783 original size:46 final size:46
Alignment explanation
Indices: 82683608--82683783 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
82683598 TGTAACCCGC
*
82683608 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
82683654 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
82683700 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
82683747 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
82683784 TGCCCAAACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
46 69 0.63
47 31 0.28
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:82688255 original size:47 final size:48
Alignment explanation
Indices: 82688180--82688402 Score: 176
Period size: 47 Copynumber: 4.8 Consensus size: 48
82688170 TGGGTAAGGT
* *
82688180 GCCGATGCCATGTCCCAGACACGGTCTTACACTGGCTCATATCTC-AA
1 GCCGAAGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAA
* * * *
82688227 GTCGAAGCCATGTCCCGGACATGGTCTTACACTGACT-ATCATCTCGTA
1 GCCGAAGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCGAA
* * * * *
82688275 GCCGACG-CATGCCCCAGACAT-GTCTTACACTGGCTTATGTC-CTAA
1 GCCGAAGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAA
* ** * * *
82688320 GGCCGATG-CATGTCCCAGACAT-GTCTTACACAAGCACTTGTCTC-AA
1 -GCCGAAGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAA
* *
82688366 TG-CTAATGCCATGTCCCAGACGTGGTCTTACACTGGC
1 -GCCGAA-GCCATGTCCCAGACATGGTCTTACACTGGC
82688403 ATACACAAGT
Statistics
Matches: 141, Mismatches: 27, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
45 4 0.03
46 55 0.39
47 65 0.46
48 17 0.12
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (48 bp):
GCCGAAGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAA
Done.