Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 255 of 290
Found at i:82690782 original size:47 final size:47
Alignment explanation
Indices: 82690719--82690891 Score: 194
Period size: 47 Copynumber: 3.7 Consensus size: 47
82690709 ATCCATAAAT
* *
82690719 GAACTTGGACTCAACTCAACGAGCTCGGATGCCTAGTTAAATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
* * * * *
82690766 GAACTCGGACTCAACTCAATGAGTTCGGA---C--GTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TCA-C
82690812 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
* *
82690859 AAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCC
82690892 CAAATATTCG
Statistics
Matches: 103, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 3 0.03
43 2 0.02
44 2 0.02
45 2 0.02
46 27 0.26
47 57 0.55
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:82690791 original size:93 final size:93
Alignment explanation
Indices: 82690672--82690887 Score: 369
Period size: 93 Copynumber: 2.3 Consensus size: 93
82690662 CGCCCATAAG
* * *
82690672 CAAACTCCGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAATGAACTTGGACTCAACTCA
1 CAAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAATGAACTCGGACTCAACTCA
82690737 ACGAGCTCGGATGCCTAGTTAAATCTCA
66 ACGAGCTCGGATGCCTAGTTAAATCTCA
* * *
82690765 CGAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CAAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAATGAACTCGGACTCAACTCA
*
82690830 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTAAATCTCA
82690858 CAAACTCGGACTCAACTCAACGAGTTCGGA
1 CAAACTCGGACTCAACTCAACGAGTTCGGA
82690888 TGCCCAAATA
Statistics
Matches: 114, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 114 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
CAAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAATGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTAAATCTCA
Found at i:82690840 original size:46 final size:46
Alignment explanation
Indices: 82690665--82690840 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 46
82690655 TGTAACCCGC
* * * *
82690665 CCATAAGCAAACTCCGACTCAACTCAACGAGTTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
** * **
82690711 CCATAAATGAACTTGGACTCAACTCAACGAGCTCGGATGCCTAGTT-AAAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C--GTTCGCAT
* * *
82690761 -C-TCA-CGAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
*
82690804 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
82690841 TGCCTAGTTA
Statistics
Matches: 101, Mismatches: 20, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
42 3 0.03
43 2 0.02
44 2 0.02
45 2 0.02
46 57 0.56
47 26 0.26
48 2 0.02
49 2 0.02
50 2 0.02
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:82693644 original size:15 final size:15
Alignment explanation
Indices: 82693606--82693650 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
82693596 AAGAAAACCG
82693606 AATAAAGAAATCCAA
1 AATAAAGAAATCCAA
* ** *
82693621 GATTGAGAAACCCAA
1 AATAAAGAAATCCAA
82693636 AATAAAGAAATCCAA
1 AATAAAGAAATCCAA
82693651 GGTACGATAC
Statistics
Matches: 22, Mismatches: 8, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.60, C:0.16, G:0.11, T:0.13
Consensus pattern (15 bp):
AATAAAGAAATCCAA
Found at i:82695929 original size:27 final size:27
Alignment explanation
Indices: 82695881--82696036 Score: 167
Period size: 27 Copynumber: 5.8 Consensus size: 27
82695871 GCGAGGCTGC
* * *
82695881 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
82695908 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
82695934 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
82695961 TAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
* *
82695988 CAAATATATGTGGCAGAGCCATCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
82696015 CAGATAATTGTGGCATAGCCAC
1 CAGAT-ATTGTGGCAGAGCCAC
82696037 TAGGACGCTT
Statistics
Matches: 108, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
26 10 0.09
27 94 0.87
28 4 0.04
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:82695974 original size:54 final size:54
Alignment explanation
Indices: 82695881--82696036 Score: 217
Period size: 54 Copynumber: 2.9 Consensus size: 54
82695871 GCGAGGCTGC
* * * *
82695881 CAGATAT-TGTGACAAAGTCACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAA
1 CAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGAA
* *
82695934 CAGATATATGTGGCAGAGCCACCAGATTAGATAATCGTGGCATAGCCACCAGAA
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAA
* *
82695988 CAAATATATGTGGCAGAGCCATCAGATCAGATAATTGTGGCATAGCCAC
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCAC
82696037 TAGGACGCTT
Statistics
Matches: 91, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
53 11 0.12
54 80 0.88
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (54 bp):
CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAA
Found at i:82697665 original size:26 final size:26
Alignment explanation
Indices: 82697634--82697741 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
82697624 TGAAATGCCC
*
82697634 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
82697660 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
82697686 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
82697712 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
82697738 ATCA
1 ATCA
82697742 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:82699698 original size:46 final size:46
Alignment explanation
Indices: 82699631--82699805 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
82699621 TGTAACCCGC
* * *
82699631 CCATAAGCGAACTCGGACTCAACTCAATGAGTTCGGGCATTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
* *
82699677 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
82699723 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTATT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTCACAT
* * *
82699772 -C-TCA-CGAACTAGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82699806 TGCCCAAATA
Statistics
Matches: 113, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
46 104 0.92
47 2 0.02
48 1 0.01
49 4 0.04
50 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:82699744 original size:92 final size:91
Alignment explanation
Indices: 82699631--82699805 Score: 230
Period size: 92 Copynumber: 1.9 Consensus size: 91
82699621 TGTAACCCGC
* * * *
82699631 CCATAAGCGAACTCGGACTCAACTCAATGAGTTCGG-G-C-ATTCACATCCATAAGTGAACTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAGCCTATT-ACAT-C-TAA-CGAACTAGG
82699693 ACTCAACTCAACGAGTTCGGACGTTCGCAT
62 ACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
82699723 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTATTACATCTCACGAACTAGGACT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA-GCCTATTACATCTAACGAACTAGGACT
82699788 CAACTCAACGAGTTCGGA
65 CAACTCAACGAGTTCGGA
82699806 TGCCCAAATA
Statistics
Matches: 73, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
92 61 0.84
93 2 0.03
94 2 0.03
95 5 0.07
96 3 0.04
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (91 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAGCCTATTACATCTAACGAACTAGGACTC
AACTCAACGAGTTCGGACGTTCGCAT
Found at i:82708133 original size:68 final size:65
Alignment explanation
Indices: 82708061--82708210 Score: 167
Period size: 64 Copynumber: 2.2 Consensus size: 65
82708051 CATCATGTGT
* * * *
82708061 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGT-GTACACCAT
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAAGTAGGACACCAT
82708125 GTAG
62 GTAG
** * *
82708129 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTAAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAAGT--AGGACACCATGT
82708194 AG
64 AG
82708196 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
82708211 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 26 0.37
65 3 0.04
66 2 0.03
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.21
Consensus pattern (65 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAAGTAGGACACCATGTAG
Found at i:82708166 original size:64 final size:64
Alignment explanation
Indices: 82708085--82708268 Score: 212
Period size: 67 Copynumber: 2.8 Consensus size: 64
82708075 AGACATTATG
* * * *
82708085 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
82708149 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTAAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGT---GTACACCATGTAGACAAGAGAGCTACGAGAT
82708214 AA
63 AA
* *
82708216 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG-ACAAGAGAGC
82708269 CGAACTATAT
Statistics
Matches: 101, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 26 0.26
66 22 0.22
67 31 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:82714800 original size:40 final size:39
Alignment explanation
Indices: 82714716--82714900 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
82714706 TTGAATGATG
* * * *
82714716 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
82714756 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
82714796 TCCGGGCTAAGCCCGAAGGCATTGGTACGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
82714835 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
82714876 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
82714901 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 33 0.27
40 79 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:82714922 original size:79 final size:79
Alignment explanation
Indices: 82714769--82714933 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
82714759 GGACTAAGAT
* * *
82714769 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTACGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAA
*
82714834 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
82714848 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-C
* *
82714911 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
82714927 CCGAAGG
1 CCGAAGG
82714934 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:82722644 original size:38 final size:40
Alignment explanation
Indices: 82722544--82722727 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
82722534 TTGAATGATG
* * *
82722544 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
82722583 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
82722624 TCCGGG-TAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
82722662 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
82722701 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
82722728 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
38 31 0.25
39 9 0.07
40 75 0.60
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:82722685 original size:78 final size:81
Alignment explanation
Indices: 82722544--82722727 Score: 227
Period size: 78 Copynumber: 2.3 Consensus size: 81
82722534 TTGAATGATG
*
82722544 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
82722608 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
82722623 TTCCGGG-TAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
82722684 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
82722702 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
82722728 AACGAGGAGC
Statistics
Matches: 90, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
77 1 0.01
78 54 0.60
79 15 0.17
80 20 0.22
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:82725231 original size:43 final size:43
Alignment explanation
Indices: 82725184--82725340 Score: 251
Period size: 43 Copynumber: 3.7 Consensus size: 43
82725174 AAGTTAGAAT
*
82725184 TGTATCGCACACTTAGCGCCAATTAATTAGCCGAGGCTATAAA
1 TGTATCGTACACTTAGCGCCAATTAATTAGCCGAGGCTATAAA
* *
82725227 TGTATTGTACACTTAGCGCCAATTAATTAGCTGAGGCTATAAA
1 TGTATCGTACACTTAGCGCCAATTAATTAGCCGAGGCTATAAA
* *
82725270 TGTATTGTACACTTAGCGCCAATTAATTAGCCGAGGCTATAAT
1 TGTATCGTACACTTAGCGCCAATTAATTAGCCGAGGCTATAAA
* *
82725313 TGTATCGGACACTTAGTGCCAATTAATT
1 TGTATCGTACACTTAGCGCCAATTAATT
82725341 CAAACGAACT
Statistics
Matches: 106, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 106 1.00
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.31
Consensus pattern (43 bp):
TGTATCGTACACTTAGCGCCAATTAATTAGCCGAGGCTATAAA
Found at i:82725296 original size:86 final size:86
Alignment explanation
Indices: 82725151--82725340 Score: 272
Period size: 86 Copynumber: 2.2 Consensus size: 86
82725141 GAACTCATAT
* * *
82725151 ACTTAGTGCCAATTAATGAGCTAAAGTTAGAATTGTATCGCACACTTAGCGCCAATTAATTAGCC
1 ACTTAGTGCCAATTAATTAGCTAAAGCTAGAAATGTATCGCACACTTAGCGCCAATTAATTAGCC
* *
82725216 GAGGCTATAAATGTATTGTAC
66 GAGGCTATAAATGTATCGGAC
* * * * * *
82725237 ACTTAGCGCCAATTAATTAGCTGAGGCTATAAATGTATTGTACACTTAGCGCCAATTAATTAGCC
1 ACTTAGTGCCAATTAATTAGCTAAAGCTAGAAATGTATCGCACACTTAGCGCCAATTAATTAGCC
*
82725302 GAGGCTATAATTGTATCGGAC
66 GAGGCTATAAATGTATCGGAC
82725323 ACTTAGTGCCAATTAATT
1 ACTTAGTGCCAATTAATT
82725341 CAAACGAACT
Statistics
Matches: 91, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
86 91 1.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (86 bp):
ACTTAGTGCCAATTAATTAGCTAAAGCTAGAAATGTATCGCACACTTAGCGCCAATTAATTAGCC
GAGGCTATAAATGTATCGGAC
Found at i:82733246 original size:19 final size:19
Alignment explanation
Indices: 82733224--82733262 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
82733214 TAAAACTAAC
82733224 ATTAAAATAAAAAATAAAG
1 ATTAAAATAAAAAATAAAG
* *
82733243 ATTAAAATTAAAATTAAAG
1 ATTAAAATAAAAAATAAAG
82733262 A
1 A
82733263 AAATATAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (19 bp):
ATTAAAATAAAAAATAAAG
Found at i:82733252 original size:6 final size:6
Alignment explanation
Indices: 82733202--82733260 Score: 52
Period size: 6 Copynumber: 10.2 Consensus size: 6
82733192 TGATCCCCTT
* * * *
82733202 AATTAA AA-T-A AA-TAA AACTAA CATTAA AATAAA AAATAA AGATTAA
1 AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA A-ATTAA
82733248 AATTAA AATTAA A
1 AATTAA AATTAA A
82733261 GAAAATATAA
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
4 4 0.09
5 4 0.09
6 30 0.70
7 5 0.12
ACGTcount: A:0.69, C:0.03, G:0.02, T:0.25
Consensus pattern (6 bp):
AATTAA
Found at i:82733298 original size:19 final size:20
Alignment explanation
Indices: 82733262--82733299 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
82733252 AAAATTAAAG
*
82733262 AAAATATAAAAATGAGAAAT
1 AAAATATAAAAATAAGAAAT
*
82733282 AAAA-ATAAAACTAAGAAA
1 AAAATATAAAAATAAGAAA
82733300 AGCTTAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.16
Consensus pattern (20 bp):
AAAATATAAAAATAAGAAAT
Found at i:82753606 original size:24 final size:24
Alignment explanation
Indices: 82753571--82753616 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
82753561 ATGTATCGGC
*
82753571 AAAAGCTGAAATGACGAAAAGCAG
1 AAAAGCTAAAATGACGAAAAGCAG
*
82753595 AAAAGCTAAAATGCCGAAAAGC
1 AAAAGCTAAAATGACGAAAAGC
82753617 TAAAAGTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.54, C:0.15, G:0.22, T:0.09
Consensus pattern (24 bp):
AAAAGCTAAAATGACGAAAAGCAG
Found at i:82753881 original size:29 final size:29
Alignment explanation
Indices: 82753845--82753942 Score: 119
Period size: 29 Copynumber: 3.4 Consensus size: 29
82753835 TGAATGTGAC
*
82753845 TGGGCCTAACGGGCCATATAAATGCGATT
1 TGGGCCTAATGGGCCATATAAATGCGATT
**
82753874 TGGGCCTAATGGGCCATATACAA-GTTATT
1 TGGGCCTAATGGGCCATATA-AATGCGATT
**
82753903 TGGGCCTAATGGGCCATATAAATATGA-T
1 TGGGCCTAATGGGCCATATAAATGCGATT
*
82753931 TGGGCTTAATGG
1 TGGGCCTAATGG
82753943 ACTAGATACA
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
28 14 0.23
29 45 0.74
30 2 0.03
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATGCGATT
Found at i:82754263 original size:26 final size:27
Alignment explanation
Indices: 82754234--82754290 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
82754224 TAATTAAGGG
* *
82754234 AAAATTATCAAAATGCCCCTAAGCGTA
1 AAAATTACCAAAATACCCCTAAGCGTA
* * *
82754261 AAAATGACCAAAATACCCCTAGGTGTA
1 AAAATTACCAAAATACCCCTAAGCGTA
82754288 AAA
1 AAA
82754291 TTTAAGTTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.47, C:0.21, G:0.12, T:0.19
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAAGCGTA
Found at i:82757726 original size:20 final size:19
Alignment explanation
Indices: 82757703--82757741 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
82757693 ATGGGCCTCA
82757703 TTGGCCCGAGATGGGC-CATG
1 TTGGCCC-A-ATGGGCTCATG
82757723 TTGGCCCAATGGGCTCATG
1 TTGGCCCAATGGGCTCATG
82757742 GGGCCCACAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 5 0.28
20 7 0.39
ACGTcount: A:0.15, C:0.26, G:0.36, T:0.23
Consensus pattern (19 bp):
TTGGCCCAATGGGCTCATG
Found at i:82758243 original size:27 final size:27
Alignment explanation
Indices: 82758187--82758274 Score: 87
Period size: 27 Copynumber: 3.3 Consensus size: 27
82758177 ACTGTAATAC
*
82758187 TGGCTTTGCCACGTTTTACT-AT-TCTGG
1 TGGCTTTGCCACG-TTTACTGATAT-TAG
82758214 TGGCTTTGCCACGTATT-CTGATATTAG
1 TGGCTTTGCCACGT-TTACTGATATTAG
*
82758241 TGGC--TGCCACGTTTACTGTTATTAG
1 TGGCTTTGCCACGTTTACTGATATTAG
*
82758266 TAGCTTTGC
1 TGGCTTTGC
82758275 TGTGTTACTG
Statistics
Matches: 52, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
24 2 0.04
25 20 0.38
26 3 0.06
27 26 0.50
28 1 0.02
ACGTcount: A:0.15, C:0.20, G:0.23, T:0.42
Consensus pattern (27 bp):
TGGCTTTGCCACGTTTACTGATATTAG
Found at i:82768140 original size:55 final size:55
Alignment explanation
Indices: 82768019--82768129 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
82768009 CCAAAAGTAC
82768019 TAGTAATAACTATCTTTTTATTATCTAGCCTAAGAATAGAAGGGGTTTTATTTGT
1 TAGTAATAACTATCTTTTTATTATCTAGCCTAAGAATAGAAGGGGTTTTATTTGT
82768074 TAGTAATAACTATCTTTTTATTATCTAGCCTAAGAATAGAAGGGGTTTTATTTGT
1 TAGTAATAACTATCTTTTTATTATCTAGCCTAAGAATAGAAGGGGTTTTATTTGT
82768129 T
1 T
82768130 TTAATTAACT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.31, C:0.09, G:0.16, T:0.44
Consensus pattern (55 bp):
TAGTAATAACTATCTTTTTATTATCTAGCCTAAGAATAGAAGGGGTTTTATTTGT
Found at i:82774645 original size:38 final size:38
Alignment explanation
Indices: 82774554--82774774 Score: 250
Period size: 40 Copynumber: 5.7 Consensus size: 38
82774544 TTGAATGATG
* * *
82774554 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTA-A
* *
82774594 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAA
*
82774633 TTC-GGCTAAGATCCGAAGGCATTTGTGCGAG-TACTAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAA
*
82774670 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACT-AA
*
82774709 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-A
* *
82774749 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
82774775 AACGAGTAGC
Statistics
Matches: 160, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
37 27 0.17
38 38 0.24
39 16 0.10
40 71 0.44
41 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:82782620 original size:40 final size:40
Alignment explanation
Indices: 82782439--82782658 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
82782429 TTGAATGATG
* * * *
82782439 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
82782479 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
82782518 TCC-GGCTAAG-CCCGAAGGCATTTGTGCGAG-TACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
82782555 TCCGGG-TAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
82782593 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
82782634 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
82782659 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 9, Indels: 18
0.86 0.05 0.10
Matches are distributed among these distances:
36 4 0.02
37 48 0.30
38 21 0.13
39 8 0.05
40 71 0.44
41 10 0.06
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:82786544 original size:47 final size:47
Alignment explanation
Indices: 82786481--82786807 Score: 513
Period size: 47 Copynumber: 7.1 Consensus size: 47
82786471 GAAATGATAG
* *
82786481 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
82786528 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
82786575 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATA-GTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
82786620 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATA--TGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
82786664 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
82786711 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
82786757 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
82786804 TAAG
1 TAAG
82786808 TCCGAAGGGC
Statistics
Matches: 263, Mismatches: 13, Indels: 8
0.93 0.05 0.03
Matches are distributed among these distances:
44 14 0.05
45 75 0.29
46 70 0.27
47 104 0.40
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:82786595 original size:21 final size:21
Alignment explanation
Indices: 82786569--82786641 Score: 56
Period size: 21 Copynumber: 3.3 Consensus size: 21
82786559 AAGTGTATAT
82786569 ATGTGATAAGGCCTAATGCCG
1 ATGTGATAAGGCCTAATGCCG
* *** ***
82786590 ATGTGATGAATGTGAAAGTGTAT
1 ATGTGAT-AAGGCCTAA-TGCCG
82786613 ATAGTGATAAGGCCTAATGCCG
1 AT-GTGATAAGGCCTAATGCCG
82786635 ATGTGAT
1 ATGTGAT
82786642 GAATGTGAAA
Statistics
Matches: 35, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
21 12 0.34
22 9 0.26
23 9 0.26
24 5 0.14
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.29
Consensus pattern (21 bp):
ATGTGATAAGGCCTAATGCCG
Found at i:82786721 original size:136 final size:139
Alignment explanation
Indices: 82786481--82786792 Score: 497
Period size: 136 Copynumber: 2.3 Consensus size: 139
82786471 GAAATGATAG
*
82786481 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATA-GTATGATAAGGCCTAATGGCCGAT
82786546 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTG
65 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTG
82786610 TATATA-GTGA
129 TATATATGTGA
82786620 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATA-TATGATAAGGCCTAATGGCCGATG
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAGTATGATAAGGCCTAATGGCCGATG
82786683 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTA
66 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTA
82786748 TATATGTGA
131 TATATGTGA
* * * * * * * *
82786757 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
82786793 CATAAATGTG
Statistics
Matches: 162, Mismatches: 8, Indels: 7
0.92 0.05 0.04
Matches are distributed among these distances:
136 82 0.51
137 20 0.12
138 49 0.30
139 11 0.07
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (139 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAGTATGATAAGGCCTAATGGCCGATG
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTA
TATATGTGA
Found at i:82788856 original size:43 final size:43
Alignment explanation
Indices: 82788809--82788920 Score: 224
Period size: 43 Copynumber: 2.6 Consensus size: 43
82788799 TTGGTTTTCA
82788809 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
82788852 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
82788895 GCACTAAGTGTGCGGGCAATAAGTGT
1 GCACTAAGTGTGCGGGCAATAAGTGT
82788921 GCGGGCGATA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 69 1.00
ACGTcount: A:0.24, C:0.14, G:0.35, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:82788917 original size:15 final size:15
Alignment explanation
Indices: 82788894--82788935 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
82788884 TTGTGAGATT
*
82788894 GGCACTAAGTGTGCG
1 GGCAATAAGTGTGCG
82788909 GGCAATAAGTGTGCG
1 GGCAATAAGTGTGCG
*
82788924 GGCGATAAGTGT
1 GGCAATAAGTGT
82788936 TCACGGTTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.24, C:0.14, G:0.40, T:0.21
Consensus pattern (15 bp):
GGCAATAAGTGTGCG
Found at i:82788924 original size:58 final size:58
Alignment explanation
Indices: 82788851--82788969 Score: 220
Period size: 58 Copynumber: 2.1 Consensus size: 58
82788841 TTGTGAGATT
*
82788851 GGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCG
1 GGCAATAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCG
*
82788909 GGCAATAAGTGTGCGGGCGATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCG
1 GGCAATAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCG
82788967 GGC
1 GGC
82788970 TTGAAATGTA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.22, C:0.15, G:0.38, T:0.25
Consensus pattern (58 bp):
GGCAATAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCG
Found at i:82788986 original size:29 final size:28
Alignment explanation
Indices: 82788951--82789024 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 28
82788941 GTTGTGAGAT
*
82788951 TGGCACTAAGTGTGCGGGCTTGAAATGT-A
1 TGGCACTAAGTGTGCGAG-TTGAAA-GTAA
*
82788980 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTA-A
82789009 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
82789025 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
27 2 0.05
28 5 0.12
29 34 0.83
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTAA
Found at i:82789459 original size:40 final size:40
Alignment explanation
Indices: 82789336--82789492 Score: 140
Period size: 40 Copynumber: 3.9 Consensus size: 40
82789326 TCGAATGATG
* *
82789336 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCT-AGTGACTATA
* * * * *
82789376 TCCGGACTAAGAT-CCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCTAGTGACTATA
*
82789416 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-TATA
1 TCCGGGCTAAGTCCCGAAG-GCATTCGTGCTAGTGACTATA
* * * * *
82789456 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAG-GCATTCGTGCTAGTGAC
82789493 GTGTATTCGG
Statistics
Matches: 95, Mismatches: 17, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
39 1 0.01
40 74 0.78
41 20 0.21
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGACTATA
Found at i:82792952 original size:47 final size:47
Alignment explanation
Indices: 82792889--82793360 Score: 750
Period size: 47 Copynumber: 10.1 Consensus size: 47
82792879 GAAATGATAG
* *
82792889 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
82792936 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
82792983 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
82793030 TAAGGCCAAATGGTCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
82793077 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
82793124 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA-GTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
82793170 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
82793217 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
82793264 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
82793310 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
82793357 TAAG
1 TAAG
82793361 TCCCGAAGGG
Statistics
Matches: 402, Mismatches: 21, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
46 86 0.21
47 316 0.79
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:82793256 original size:140 final size:140
Alignment explanation
Indices: 82792889--82793360 Score: 739
Period size: 140 Copynumber: 3.4 Consensus size: 140
82792879 GAAATGATAG
*
82792889 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
82792954 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
82793019 TATATGTGTGA
131 TATAT-AGTGA
* * * * *
82793030 TAAGGCCAAATGGTCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCAAATGGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
82793095 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
82793160 TATATAGTGA
131 TATATAGTGA
*
82793170 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
82793235 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
82793299 TATATATGTGA
131 TATATA-GTGA
* * * * * * * * * *
82793310 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
82793361 TCCCGAAGGG
Statistics
Matches: 305, Mismatches: 25, Indels: 3
0.92 0.08 0.01
Matches are distributed among these distances:
139 20 0.07
140 156 0.51
141 129 0.42
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (140 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATAGTGA
Found at i:82793535 original size:37 final size:37
Alignment explanation
Indices: 82793479--82793557 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
82793469 CCGAGCTCTA
* * *
82793479 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
82793516 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
82793553 AAGAC
1 AAGAC
82793558 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:82796547 original size:42 final size:42
Alignment explanation
Indices: 82796449--82796606 Score: 201
Period size: 43 Copynumber: 3.7 Consensus size: 42
82796439 GGTGGTGTGA
* * *
82796449 GAGCCTCGAGCAGCATCGGCATCTTGGTACCTCGGATGTGTGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * *
82796492 GAGCCTCAAGCAGCACCGGCACCTTGGTGCTCGAATGTGCAGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGC-GG
* *
82796535 G-GCCTTGAGCAGCATCGACACCTTGGTGCCTCGGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTG-CTCGGATGTGCGG
*
82796577 GAGCCTCGAGCAGCATCGGCACCATGGTGC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGC
82796607 CTCAGACACC
Statistics
Matches: 98, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
42 36 0.37
43 62 0.63
ACGTcount: A:0.18, C:0.29, G:0.34, T:0.19
Consensus pattern (42 bp):
GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
Found at i:82796547 original size:85 final size:85
Alignment explanation
Indices: 82796451--82796606 Score: 240
Period size: 85 Copynumber: 1.8 Consensus size: 85
82796441 TGGTGTGAGA
* * * *
82796451 GCCTCGAGCAGCATCGGCATCTTGGTACCTCGGATGTGTGGGAGCCTCAAGCAGCACCGGCACCT
1 GCCTCGAGCAGCATCGACACCTTGGTACCTCGGATGTGCGGGAGCCTCAAGCAGCACCGGCACCA
82796516 TGGTGCTCGAATGTGCAGGG
66 TGGTGCTCGAATGTGCAGGG
* * * *
82796536 GCCTTGAGCAGCATCGACACCTTGGTGCCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCA
1 GCCTCGAGCAGCATCGACACCTTGGTACCTCGGATGTGCGGGAGCCTCAAGCAGCACCGGCACCA
82796601 TGGTGC
66 TGGTGC
82796607 CTCAGACACC
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
85 63 1.00
ACGTcount: A:0.17, C:0.29, G:0.34, T:0.19
Consensus pattern (85 bp):
GCCTCGAGCAGCATCGACACCTTGGTACCTCGGATGTGCGGGAGCCTCAAGCAGCACCGGCACCA
TGGTGCTCGAATGTGCAGGG
Found at i:82796743 original size:43 final size:43
Alignment explanation
Indices: 82796689--82796878 Score: 217
Period size: 43 Copynumber: 4.5 Consensus size: 43
82796679 CATGTGTGAA
* *
82796689 AGCCTC-AGCACCA-CTGGCAACCTAGTCCCTTGGTCGTGCGGG
1 AGCCTCGAGCACCATC-GGCAACCTAGGCCCTTGGTCATGCGGG
* * * *
82796731 AGCCTCGAGCACCATCAGTAACCTAGGCCCTTGGTCGTACGGG
1 AGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCATGCGGG
* * *
82796774 AGCCT-TAGGCACCATCGGCAACCTAGGCCCTTGGTCATGTGAG
1 AGCCTCGA-GCACCATCGGCAACCTAGGCCCTTGGTCATGCGGG
* * *
82796817 AGCCTCG-GCACCATCGACAACCTAAGCCCTTGGTTATGCGGG
1 AGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCATGCGGG
*
82796859 AGCCTCGGGCACCATCGGCA
1 AGCCTCGAGCACCATCGGCA
82796879 CTTTGTTGCT
Statistics
Matches: 125, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
42 44 0.35
43 80 0.64
44 1 0.01
ACGTcount: A:0.20, C:0.34, G:0.28, T:0.18
Consensus pattern (43 bp):
AGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCATGCGGG
Found at i:82796859 original size:85 final size:86
Alignment explanation
Indices: 82796689--82796932 Score: 241
Period size: 85 Copynumber: 2.9 Consensus size: 86
82796679 CATGTGTGAA
* * * *
82796689 AGCCTCA-GCACCA-CTGGCAACCTAGTCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCAGTAA
1 AGCCTCAGGCACCATC-GGCAACCTAGGCCCTTGGTCATGCGAGAGCCTCGAGCACCATCAGCAA
* *
82796752 CCTAGGCCCTTGGTCGTACGGG
65 CCTAAGCCCTTGGTCATACGGG
* *
82796774 AGCCTTAGGCACCATCGGCAACCTAGGCCCTTGGTCATGTGAGAGCCTCG-GCACCATC-GACAA
1 AGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCATGCGAGAGCCTCGAGCACCATCAG-CAA
* *
82796837 CCTAAGCCCTTGGTTATGCGGG
65 CCTAAGCCCTTGGTCATACGGG
* * * *** * *
82796859 AGCCTCGGGCACCATCGGC-ACTTTGTTGCTTGGAT-GTGCGGGAGCCTC-AGACACCATCAGCA
1 AGCCTCAGGCACCATCGGCAACCTAGGCCCTTGG-TCATGCGAGAGCCTCGAG-CACCATCAGCA
82796921 ACCTAAGCCCTT
64 ACCTAAGCCCTT
82796933 CGTTGTGTAG
Statistics
Matches: 132, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
84 21 0.16
85 73 0.55
86 37 0.28
87 1 0.01
ACGTcount: A:0.20, C:0.33, G:0.27, T:0.20
Consensus pattern (86 bp):
AGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCATGCGAGAGCCTCGAGCACCATCAGCAAC
CTAAGCCCTTGGTCATACGGG
Found at i:82796860 original size:128 final size:126
Alignment explanation
Indices: 82796683--82797481 Score: 497
Period size: 128 Copynumber: 6.4 Consensus size: 126
82796673 TGGTTGCATG
* * *
82796683 TGTGAAAGCCTCAGCACCA-CTGGCAACCT-AGTCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
1 TGTGAGAGCCTCGGCACCATC-GACAACCTAAG-CCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
* *
82796746 CAGTAACCTAGGCCCTTGGTCGTACGGGAGCCTTAGGCACCATCGGCAACCTAGGCCCTTGGTCA
64 C-GCAACCTAGGCCCTTGGT-GTGCGGGAGCCTTAGGCACCATCGGCAACCTAGGCCCTTGGTCA
** *
82796811 TGTGAGAGCCTCGGCACCATCGACAACCTAAGCCCTTGGTTATGCGGGAGCCTCGGGCACCATCG
1 TGTGAGAGCCTCGGCACCATCGACAACCTAAGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATC-
* * *** * * * * *
82796876 GC-ACTTTGTTGCTTGGATGTGCGGGAGCCTCAGACACCATCAGCAACCTAAGCCCTTCGT--
65 GCAACCTAGGCCCTTGG-TGTGCGGGAGCCTTAGGCACCATCGGCAACCTAGGCCCTTGGTCA
* * * * * * *
82796936 TGTGTAGGAGCCTTCGGCACCA-CCAGCAAACTAGGCCTTTGGTTGTGCAGGAGCCTC-AG--GC
1 TGTG-A-GAGCC-TCGGCACCATCGA-CAACCTAAGCCCTTGGTCGTGCGGGAGCCTCGAGCACC
* * *
82796997 AT--C-A--T-GG---TTGGATGTGCGAGAGCC-TCGGCACCAGT-GGCAACTTAGGCCCTTGGT
62 ATCGCAACCTAGGCCCTTGG-TGTGCGGGAGCCTTAGGCACCA-TCGGCAACCTAGGCCCTTGGT
*
82797051 CG
125 CA
* * * * * * *** *
82797053 CGTGGGAGCCTCGGGCACCATCGACAACATAGGCCCTTAGTCGAGTAAGAGCCTCGGGCACCATC
1 TGTGAGAGCCTC-GGCACCATCGACAACCTAAGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATC
* *
82797118 GGCAACCTAGGCCCTTGGTTGTGCGGTAGCCTT-GGCACCATCGGCAACCTAAGCCCTTGGTCA
65 -GCAACCTAGGCCCTTGG-TGTGCGGGAGCCTTAGGCACCATCGGCAACCTAGGCCCTTGGTCA
* * * *
82797181 TGTGGGAGCCTCGGGCACCATCGAC-ACCTAGGCCCTTGGTCGCGCGGAAGCCTC-AGGCACCAT
1 TGTGAGAGCCTC-GGCACCATCGACAACCTAAGCCCTTGGTCGTGCGGGAGCCTCGA-GCACCAT
* * * ** * * *
82797244 CAGCAACCTAGTCCTTTCGTCGTGCGGGAGCCTCGGGCACCATCAGCAACCTAGGCCCTCGGTCG
64 C-GCAACCTAGGCCCTTGGT-GTGCGGGAGCCTTAGGCACCATCGGCAACCTAGGCCCTTGGTCA
** * * * * * **
82797309 TACGAGAGCCTTGTGCACTATCGGCAACCT-AGGCCTTGGTCGGGCTAGAGCCTCG-GCCACCAT
1 TGTGAGAGCCTCG-GCACCATCGACAACCTAAGCCCTTGGTCGTGCGGGAGCCTCGAG-CACCAT
* * ** * * * *
82797372 CGGC-ACATTGGTGCTTGGATGTGCGGGAGCC-TCGAACACCATCGACAGCCTAGGCCCTTGGTC
64 C-GCAACCTAGGCCCTTGG-TGTGCGGGAGCCTTAG-GCACCATCGGCAACCTAGGCCCTTGGTC
82797435 -
126 A
*
82797435 -GTGCAGGAGCCTCAGGCACCATCTG-CAACCTAGGCCCTTGGTCGTGC
1 TGTG-A-GAGCCTC-GGCACCATC-GACAACCTAAGCCCTTGGTCGTGC
82797482 AGAAGCCTTA
Statistics
Matches: 522, Mismatches: 108, Indels: 82
0.73 0.15 0.12
Matches are distributed among these distances:
114 2 0.00
115 56 0.11
116 20 0.04
117 3 0.01
118 3 0.01
119 1 0.00
120 1 0.00
121 1 0.00
122 3 0.01
124 1 0.00
125 10 0.02
126 4 0.01
127 171 0.33
128 238 0.46
129 8 0.02
ACGTcount: A:0.19, C:0.32, G:0.29, T:0.20
Consensus pattern (126 bp):
TGTGAGAGCCTCGGCACCATCGACAACCTAAGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCG
CAACCTAGGCCCTTGGTGTGCGGGAGCCTTAGGCACCATCGGCAACCTAGGCCCTTGGTCA
Found at i:82796900 original size:170 final size:169
Alignment explanation
Indices: 82796715--82797489 Score: 643
Period size: 170 Copynumber: 4.6 Consensus size: 169
82796705 GCAACCTAGT
* * * *
82796715 CCCTTGGTCGTGCGGGAGCCTCGAGCACCATCAGTAACCTAGGCCCTTGGTCGTACGGGAGCCTT
1 CCCTTGGTCGTGCGGGAGCCTCGAGCACCATCAGCAACCTAGGCCCTTCGTCGTGCGGGAGCCTC
* *
82796780 AGGCACCATCGGCAACCTAGGCCCTTGGTCATGTG-AGAGCCTCGGCACCATCGACAACCTAAGC
66 AGGCACCATCAGCAACCTAGGCCCTTGGTC-TGTGCAGAGCCTCGGCACCATCGGCAACCT-AGC
* * * *
82796844 CCTTGGTTATGCGGGAGCCTCGGGCACCATCGGCACTTTGT
129 CCTTGGTCATGCGAGAGCCTCGGGCACCATCGGCACTTAGG
** * * **
82796885 TGCTTGGAT-GTGCGGGAGCCTC-AGACACCATCAGCAACCTAAGCCCTTCGTTGTGTAGGAGCC
1 CCCTTGG-TCGTGCGGGAGCCTCGAG-CACCATCAGCAACCTAGGCCCTTCGTCGTGCGGGAGCC
* * *
82796948 TTC-GGCACCACCAGCAAACTAGGCCTTTGGT-TGTGCAGGAGCCTCAGG---CAT---C-A--T
64 -TCAGGCACCATCAGCAACCTAGGCCCTTGGTCTGTGCA-GAGCCTC-GGCACCATCGGCAACCT
* *
82797002 -G--GTTGGAT-GTGCGAGAGCCTC-GGCACCAGT-GGCAACTTAGG
126 AGCCCTTGG-TCATGCGAGAGCCTCGGGCACCA-TCGGC-ACTTAGG
* * * * * * ***
82797043 CCCTTGGTCGCGTGGGAGCCTCGGGCACCATC-GACAACATAGGCCCTTAGTCGAGTAAGAGCCT
1 CCCTTGGTCGTGCGGGAGCCTCGAGCACCATCAG-CAACCTAGGCCCTTCGTCGTGCGGGAGCCT
* * * *
82797107 CGGGCACCATCGGCAACCTAGGCCCTTGGT-TGTGCGGTAGCCTTGGCACCATCGGCAACCTAAG
65 CAGGCACCATCAGCAACCTAGGCCCTTGGTCTGTGCAG-AGCCTCGGCACCATCGGCAACCT-AG
* * * *
82797171 CCCTTGGTCATGTGGGAGCCTCGGGCACCATCGACACCTAGG
128 CCCTTGGTCATGCGAGAGCCTCGGGCACCATCGGCACTTAGG
* * * *
82797213 CCCTTGGTCGCGCGGAAGCCTC-AGGCACCATCAGCAACCTAGTCCTTTCGTCGTGCGGGAGCCT
1 CCCTTGGTCGTGCGGGAGCCTCGA-GCACCATCAGCAACCTAGGCCCTTCGTCGTGCGGGAGCCT
* * * * *
82797277 CGGGCACCATCAGCAACCTAGGCCCTCGGTC-GTACGAGAGCCTTGTGCACTATCGGCAACCTAG
65 CAGGCACCATCAGCAACCTAGGCCCTTGGTCTGTGC-AGAGCCTCG-GCACCATCGGCAACCTAG
* ** * *
82797341 GCCTTGGTCGGGCTAGAGCCTCGGCCACCATCGGCACATT-GG
128 CCCTTGGTCATGCGAGAGCCTCGGGCACCATCGGCAC-TTAGG
** * * * *
82797383 TGCTTGGAT-GTGCGGGAGCCTCGAACACCATC-GACAGCCTAGGCCCTTGGTCGTGCAGGAGCC
1 CCCTTGG-TCGTGCGGGAGCCTCGAGCACCATCAG-CAACCTAGGCCCTTCGTCGTGCGGGAGCC
*
82797446 TCAGGCACCATCTGCAACCTAGGCCCTTGGTC-GTGCAGAAGCCT
64 TCAGGCACCATCAGCAACCTAGGCCCTTGGTCTGTGCAG-AGCCT
82797490 TAGTGTAACA
Statistics
Matches: 484, Mismatches: 81, Indels: 80
0.75 0.13 0.12
Matches are distributed among these distances:
157 17 0.04
158 101 0.21
159 2 0.00
160 4 0.01
162 1 0.00
163 1 0.00
164 2 0.00
165 1 0.00
166 1 0.00
168 8 0.02
169 7 0.01
170 306 0.63
171 33 0.07
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.20
Consensus pattern (169 bp):
CCCTTGGTCGTGCGGGAGCCTCGAGCACCATCAGCAACCTAGGCCCTTCGTCGTGCGGGAGCCTC
AGGCACCATCAGCAACCTAGGCCCTTGGTCTGTGCAGAGCCTCGGCACCATCGGCAACCTAGCCC
TTGGTCATGCGAGAGCCTCGGGCACCATCGGCACTTAGG
Found at i:82796948 original size:43 final size:43
Alignment explanation
Indices: 82796893--82796994 Score: 116
Period size: 43 Copynumber: 2.4 Consensus size: 43
82796883 GTTGCTTGGA
* * *
82796893 TGTGCGGGAGCCTCAGACACCATCAGCAACCTAAGCCCTTCGT
1 TGTGCAGGAGCCTCAGACACCACCAGCAAACTAAGCCCTTCGT
* * * * *
82796936 TGTGTAGGAGCCTTC-GGCACCACCAGCAAACTAGGCCTTTGGT
1 TGTGCAGGAGCC-TCAGACACCACCAGCAAACTAAGCCCTTCGT
82796979 TGTGCAGGAGCCTCAG
1 TGTGCAGGAGCCTCAG
82796995 GCATCATGGT
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
42 2 0.04
43 44 0.92
44 2 0.04
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (43 bp):
TGTGCAGGAGCCTCAGACACCACCAGCAAACTAAGCCCTTCGT
Found at i:82797300 original size:328 final size:326
Alignment explanation
Indices: 82796673--82797300 Score: 800
Period size: 328 Copynumber: 1.9 Consensus size: 326
82796663 GGCACCTTGG
* * *
82796673 TGGTTGCATGTGTGAAAGCCTCAGCACCACTGGCAACCTAGTCCCTTGGTCGTGCGGGAGCCTCG
1 TGGTTGCATGTGCGAAAGCCTCAGCACCACTGGCAACCTAGGCCCTTGGTCGCGCGGGAGCCTCG
* * * * *
82796738 AGCACCATCAGTAACCTAGGCCCTTGGTCGTACGGGAGCCTTAGGCACCATCGGCAACCTAGGCC
66 AGCACCATCAGCAACATAGGCCCTTAGTCGTAC-AGAGCCTCAGGCACCATCGGCAACCTAGGCC
*
82796803 CTTGGTCATGTGAGAGCCTCGGCACCATCGACAACCTAAGCCCTTGGTTATGCGGGAGCCTCGGG
130 CTTGGT-ATGTGAGAGCCTCGGCACCATCGACAACCTAAGCCCTTGGTCATGCGGGAGCCTCGGG
* * * *** * *
82796868 CACCATCGGCACTTTGTTGCTTGGATGTGCGGGAGCCTCAGACACCATCAGCAACCTAAGCCCTT
194 CACCATCGACACCTAGGCCCTTGGATGCGCGGAAGCCTCAGACACCATCAGCAACCTAAGCCCTT
* *
82796933 CGTTGTGTAGGAGCCTTCGGCACCACCAGCAAACTAGGCCTTTGGTTGTGCAGGAGCCTCAGGCA
259 CGTCGTGCAGGAGCCTTCGGCACCACCAGCAAACTAGGCCTTTGGTTGTGCAGGAGCCTCAGGCA
82796998 TCA
324 TCA
* * * * * *
82797001 TGGTTGGATGTGCGAGAGCCTCGGCACCAGTGGCAACTTAGGCCCTTGGTCGCGTGGGAGCCTCG
1 TGGTTGCATGTGCGAAAGCCTCAGCACCACTGGCAACCTAGGCCCTTGGTCGCGCGGGAGCCTCG
* *
82797066 GGCACCATC-GACAACATAGGCCCTTAGTCGAGTA-AGAGCCTCGGGCACCATCGGCAACCTAGG
66 AGCACCATCAG-CAACATAGGCCCTTAGTC--GTACAGAGCCTCAGGCACCATCGGCAACCTAGG
* * * *
82797129 CCCTTGGT-TGTGCGGTAGCCTTGGCACCATCGGCAACCTAAGCCCTTGGTCATGTGGGAGCCTC
128 CCCTTGGTATGTG-AG-AGCCTCGGCACCATCGACAACCTAAGCCCTTGGTCATGCGGGAGCCTC
*
82797193 GGGCACCATCGACACCTAGGCCCTTGG-TCGCGCGGAAGCCTCAGGCACCATCAGCAACCT-AGT
191 GGGCACCATCGACACCTAGGCCCTTGGAT-GCGCGGAAGCCTCAGACACCATCAGCAACCTAAG-
* * * *
82797256 CCTTTCGTCGTGCGGGAGCC-TCGGGCACCATCAGCAACCTAGGCC
254 CCCTTCGTCGTGCAGGAGCCTTC-GGCACCACCAGCAAACTAGGCC
82797301 CTCGGTCGTA
Statistics
Matches: 256, Mismatches: 36, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
326 4 0.02
327 7 0.03
328 242 0.95
330 3 0.01
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.20
Consensus pattern (326 bp):
TGGTTGCATGTGCGAAAGCCTCAGCACCACTGGCAACCTAGGCCCTTGGTCGCGCGGGAGCCTCG
AGCACCATCAGCAACATAGGCCCTTAGTCGTACAGAGCCTCAGGCACCATCGGCAACCTAGGCCC
TTGGTATGTGAGAGCCTCGGCACCATCGACAACCTAAGCCCTTGGTCATGCGGGAGCCTCGGGCA
CCATCGACACCTAGGCCCTTGGATGCGCGGAAGCCTCAGACACCATCAGCAACCTAAGCCCTTCG
TCGTGCAGGAGCCTTCGGCACCACCAGCAAACTAGGCCTTTGGTTGTGCAGGAGCCTCAGGCATC
A
Found at i:82797482 original size:43 final size:43
Alignment explanation
Indices: 82797016--82797489 Score: 421
Period size: 43 Copynumber: 11.1 Consensus size: 43
82797006 GGATGTGCGA
* * **
82797016 GAGCCTC-GGCACCAGT-GGCAACTTAGGCCCTTGGTCGCGTGG
1 GAGCCTCGGGCACCA-TCGGCAACCTAGGCCCTTGGTCGTGCAG
* * * * * *
82797058 GAGCCTCGGGCACCATCGACAACATAGGCCCTTAGTCGAGTAA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCAG
*
82797101 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTTGTGC-G
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCAG
* * * **
82797143 GTAGCCT-TGGCACCATCGGCAACCTAAGCCCTTGGTCATGTGG
1 G-AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCAG
* *
82797186 GAGCCTCGGGCACCATCGAC-ACCTAGGCCCTTGGTCGCGC-G
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCAG
* * * * * *
82797227 GAAGCCTCAGGCACCATCAGCAACCTAGTCCTTTCGTCGTGCGG
1 G-AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCAG
* * *
82797271 GAGCCTCGGGCACCATCAGCAACCTAGGCCCTCGGTCGTAC-G
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCAG
* * * *
82797313 AGAGCCTTGTGCACTATCGGCAACCTAGG-CCTTGGTCGGGCTA-
1 -GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGC-AG
* * * ** *
82797356 GAGCCTCGGCCACCATCGGC-ACATTGGTGCTTGGAT-GTGCGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCAG
** * *
82797398 GAGCCTCGAACACCATCGACAGCCTAGGCCCTTGGTCGTGCAG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCAG
* *
82797441 GAGCCTCAGGCACCATCTGCAACCTAGGCCCTTGGTCGTGCAG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCAG
*
82797484 AAGCCT
1 GAGCCT
82797490 TAGTGTAACA
Statistics
Matches: 347, Mismatches: 69, Indels: 31
0.78 0.15 0.07
Matches are distributed among these distances:
41 7 0.02
42 127 0.37
43 211 0.61
44 2 0.01
ACGTcount: A:0.19, C:0.33, G:0.30, T:0.19
Consensus pattern (43 bp):
GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCAG
Found at i:82798529 original size:39 final size:39
Alignment explanation
Indices: 82798486--82798634 Score: 217
Period size: 39 Copynumber: 3.8 Consensus size: 39
82798476 ACATATTACC
* * * * * *
82798486 AGCACGTAGCCTACAGACCTTAAGTCCGGTTATAATTCT
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCA
*
82798525 AGCACATAGCCTGCGGACCCTAAGTCCAGATATAATTCA
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCA
*
82798564 AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCA
*
82798603 AGCACATAGCCTGCGGACCCTAAGTTCGGATA
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATA
82798635 ACCATCACTG
Statistics
Matches: 100, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 100 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (39 bp):
AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCA
Found at i:82798536 original size:78 final size:78
Alignment explanation
Indices: 82798454--82798614 Score: 171
Period size: 78 Copynumber: 2.1 Consensus size: 78
82798444 ACCAGCTCGA
* * * * * * *
82798454 AGCCTACCGAACTTTAGCCCGGACAT-ATTACCAGCACGTAGCCTACAGACCTTAAGTCCGGTTA
1 AGCCTACCGAACCTAAGCCCAGACATAATT-CAAGCACATAGCCTACAGACCCTAAGTCCGGATA
*
82798518 TAATTCTAGCACAT
65 TAATTCCAGCACAT
* * * * * * *
82798532 AGCCTGCGGACCCTAAGTCCAGATATAATTCAAGCACATAGCCTGCGGACCCTAAGTCCGGATAT
1 AGCCTACCGAACCTAAGCCCAGACATAATTCAAGCACATAGCCTACAGACCCTAAGTCCGGATAT
82798597 AATTCCAGCACAT
66 AATTCCAGCACAT
82798610 AGCCT
1 AGCCT
82798615 GCGGACCCTA
Statistics
Matches: 67, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
78 64 0.96
79 3 0.04
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (78 bp):
AGCCTACCGAACCTAAGCCCAGACATAATTCAAGCACATAGCCTACAGACCCTAAGTCCGGATAT
AATTCCAGCACAT
Found at i:82806507 original size:39 final size:39
Alignment explanation
Indices: 82806462--82806573 Score: 170
Period size: 39 Copynumber: 2.9 Consensus size: 39
82806452 AGACATATTA
* * *
82806462 CCAGCACGTAGCCTGCGGACCTTAAGTCCGGTTATAATT
1 CCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATT
* * *
82806501 CTAGCACATAGCTTGCGCACCCTAAGTCCGGATATAATT
1 CCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATT
82806540 CCAGCACATAGCCTGCGGACCCTAAGTCCGGATA
1 CCAGCACATAGCCTGCGGACCCTAAGTCCGGATA
82806574 AACATCACTG
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 64 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.22
Consensus pattern (39 bp):
CCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATT
Found at i:82808779 original size:85 final size:86
Alignment explanation
Indices: 82808636--82808797 Score: 220
Period size: 85 Copynumber: 1.9 Consensus size: 86
82808626 CACACTTAGG
* *
82808636 CACCATCGGCAACCTAGGCCCTTGGTCGTACGAGAGCCTCAAGCACCATCGACACCTTGGTGACT
1 CACCATCGGCAACCTAGGCCCTTGATCGTACGAGAGCCTCAAGCACCATCGACACCTTGATGACT
82808701 -GGATGTGCGGGAGCCTCAGA
66 CGGATGTGCGGGAGCCTCAGA
* * ** * * *
82808721 CACCATCGGTAACTTAGGCCCTTGATCGTACTG-GAGCCTCGGGCACCATTGGCACCTTGATGCC
1 CACCATCGGCAACCTAGGCCCTTGATCGTAC-GAGAGCCTCAAGCACCATCGACACCTTGATGAC
82808785 TCGGATGTGCGGG
65 TCGGATGTGCGGG
82808798 CTAAAGAAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
85 54 0.82
86 12 0.18
ACGTcount: A:0.20, C:0.31, G:0.29, T:0.20
Consensus pattern (86 bp):
CACCATCGGCAACCTAGGCCCTTGATCGTACGAGAGCCTCAAGCACCATCGACACCTTGATGACT
CGGATGTGCGGGAGCCTCAGA
Found at i:82812990 original size:17 final size:17
Alignment explanation
Indices: 82812968--82813001 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
82812958 ATCCACTAAT
*
82812968 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
82812985 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
82813002 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:82817618 original size:17 final size:17
Alignment explanation
Indices: 82817596--82817629 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
82817586 ATCCACTAAT
*
82817596 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
82817613 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
82817630 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:82824167 original size:13 final size:13
Alignment explanation
Indices: 82824149--82824178 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
82824139 AAAAAATGTT
82824149 GCCTGGTAGCGTC
1 GCCTGGTAGCGTC
82824162 GCCTGGTAGCGTC
1 GCCTGGTAGCGTC
82824175 -CCTG
1 GCCTG
82824179 CTTTCAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.24
13 13 0.76
ACGTcount: A:0.07, C:0.33, G:0.37, T:0.23
Consensus pattern (13 bp):
GCCTGGTAGCGTC
Found at i:82831372 original size:29 final size:28
Alignment explanation
Indices: 82831329--82831406 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
82831319 TCATGAGATT
82831329 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
82831359 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
82831386 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
82831407 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:82831624 original size:174 final size:174
Alignment explanation
Indices: 82831359--82831686 Score: 611
Period size: 174 Copynumber: 1.9 Consensus size: 174
82831349 AAATTGTACA
* *
82831359 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
*
82831424 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTCTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTCTACCGAGTCAA
82831489 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGTATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGTATG
*
82831533 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
*
82831598 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTCTACCGAGTCAA
82831663 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
82831687 ACCTTGGGTT
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 149 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTCTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGTATG
Found at i:82839387 original size:29 final size:28
Alignment explanation
Indices: 82839344--82839421 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
82839334 TCATGAGATT
82839344 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
82839374 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
82839401 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
82839422 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:82839639 original size:174 final size:174
Alignment explanation
Indices: 82839374--82839701 Score: 611
Period size: 174 Copynumber: 1.9 Consensus size: 174
82839364 AAATTGTACA
* *
82839374 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
*
82839439 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTCTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTCTACCGAGTCAA
82839504 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGTATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGTATG
*
82839548 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
*
82839613 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTCTACCGAGTCAA
82839678 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
82839702 ACCTTGGGTT
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 149 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTCTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGTATG
Found at i:82842008 original size:25 final size:27
Alignment explanation
Indices: 82841971--82842023 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
82841961 TCAAACATGC
82841971 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
82841997 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
82842023 A
1 A
82842024 AAATTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:82843533 original size:26 final size:26
Alignment explanation
Indices: 82843503--82843584 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
82843493 TGAAATTCCC
82843503 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
82843529 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
82843555 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
82843581 ATCA
1 ATCA
82843585 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:82848968 original size:24 final size:26
Alignment explanation
Indices: 82848932--82848982 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
82848922 TCAAACATGC
82848932 ATTTAGGTCAATTTAAC-CCTAGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGT
* *
82848957 ATTTCGGT-AATTTATCTCCTAGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGT
82848982 A
1 A
82848983 AAACTTAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 7 0.30
25 16 0.70
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACTCCTAGGGT
Found at i:82850488 original size:26 final size:26
Alignment explanation
Indices: 82850458--82850513 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
82850448 TGAAATTCCC
82850458 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
82850484 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
82850510 ATCA
1 ATCA
82850514 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:82864574 original size:58 final size:59
Alignment explanation
Indices: 82864480--82864601 Score: 174
Period size: 58 Copynumber: 2.1 Consensus size: 59
82864470 TCCCTCCTTA
* * * * *
82864480 ATCCCAAAAGGTATAATTCGGATACCGTTACGTGTTCGGTACCCAATAATGAATGAATC
1 ATCCCAAAAGGTAAAAATCGAATACCGTTACATGTTCGGTACCCAACAATGAATGAATC
*
82864539 ATCCC-AAAGGTAAAAATCGAATACCGTTGCATGTTCGGTACCCAACAATGAATGAATC
1 ATCCCAAAAGGTAAAAATCGAATACCGTTACATGTTCGGTACCCAACAATGAATGAATC
*
82864597 GTCCC
1 ATCCC
82864602 TGTCCCTCCC
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
58 51 0.91
59 5 0.09
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (59 bp):
ATCCCAAAAGGTAAAAATCGAATACCGTTACATGTTCGGTACCCAACAATGAATGAATC
Found at i:82865148 original size:25 final size:25
Alignment explanation
Indices: 82865118--82865165 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
82865108 TACGAGTCAT
82865118 CCGGTC-CCTTCCCTTTTGAAACATC
1 CCGGTCTCCTT-CCTTTTGAAACATC
*
82865143 CCGGTCTCCTTCCTTTTGGAACA
1 CCGGTCTCCTTCCTTTTGAAACA
82865166 AGAGCCTCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.15, C:0.38, G:0.15, T:0.33
Consensus pattern (25 bp):
CCGGTCTCCTTCCTTTTGAAACATC
Found at i:82865366 original size:43 final size:43
Alignment explanation
Indices: 82865319--82865706 Score: 321
Period size: 42 Copynumber: 9.1 Consensus size: 43
82865309 GGTGGTACGA
* * *
82865319 GAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCGGATGTGTGG
1 GAGCCTCGAGCACCATCGGCACCTTGGTGCCTTGGATGTGCGG
* * * * *
82865362 GAGCCTCGAGTAGCATCGGTACCTTGGTG-CTCGGATATGCGG
1 GAGCCTCGAGCACCATCGGCACCTTGGTGCCTTGGATGTGCGG
* * * *
82865404 GGGCCTCGAGCAGCAAT-GGCACCTTGGTGCCTCGAATGTGCGG
1 GAGCCTCGAGCA-CCATCGGCACCTTGGTGCCTTGGATGTGCGG
* * * **
82865447 GAGCCTCGAGCAGCATTGGCACCATGGTGCCTCAGATGTGCGG
1 GAGCCTCGAGCACCATCGGCACCTTGGTGCCTTGGATGTGCGG
* * * * * *
82865490 GAGCCTTG-GATACCATCGGCAAACTAGG-CCCTTGGTTGTGCGG
1 GAGCCTCGAG-CACCATCGGC-ACCTTGGTGCCTTGGATGTGCGG
* * * *
82865533 GAGCCTCGAGCACCATCGGTACCTTGGTG-GTTGGATGTACGA
1 GAGCCTCGAGCACCATCGGCACCTTGGTGCCTTGGATGTGCGG
* ** *
82865575 GAGCCTCG-GCACCATCGGGAACCTAAG-CCCTTGG-TCGTGCGG
1 GAGCCTCGAGCACCATC-GGCACCTTGGTGCCTTGGAT-GTGCGG
* *
82865617 GAGCCTCGAGCACCATCGGCACCTAGG-CCCTTGG-TCGTGCGG
1 GAGCCTCGAGCACCATCGGCACCTTGGTGCCTTGGAT-GTGCGG
* * *
82865659 GAGCCTCGGGCACCATTGGCACGTTGGTG-CTTGGATGTGCGG
1 GAGCCTCGAGCACCATCGGCACCTTGGTGCCTTGGATGTGCGG
82865701 GAGCCT
1 GAGCCT
82865707 TGGACACCAT
Statistics
Matches: 280, Mismatches: 52, Indels: 27
0.78 0.14 0.08
Matches are distributed among these distances:
41 9 0.03
42 143 0.51
43 123 0.44
44 5 0.02
ACGTcount: A:0.16, C:0.28, G:0.35, T:0.21
Consensus pattern (43 bp):
GAGCCTCGAGCACCATCGGCACCTTGGTGCCTTGGATGTGCGG
Found at i:82865475 original size:85 final size:86
Alignment explanation
Indices: 82865319--82865495 Score: 250
Period size: 85 Copynumber: 2.1 Consensus size: 86
82865309 GGTGGTACGA
* * * *
82865319 GAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCGGATGTGTGGGAGCCTCGAGTAGCATCGGTAC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCGAATGTGCGGGAGCCTCGAGCAGCATCGGCAC
* *
82865384 CTTGGTG-CTCGGATATGCGG
66 CATGGTGCCTCAGATATGCGG
* *
82865404 GGGCCTCGAGCAGCAAT-GGCACCTTGGTGCCTCGAATGTGCGGGAGCCTCGAGCAGCATTGGCA
1 GAGCCTCGAGCAGC-ATCGGCACCTTGGTGCCTCGAATGTGCGGGAGCCTCGAGCAGCATCGGCA
*
82865468 CCATGGTGCCTCAGATGTGCGG
65 CCATGGTGCCTCAGATATGCGG
82865490 GAGCCT
1 GAGCCT
82865496 TGGATACCAT
Statistics
Matches: 80, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
85 62 0.77
86 18 0.22
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.20
Consensus pattern (86 bp):
GAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCGAATGTGCGGGAGCCTCGAGCAGCATCGGCAC
CATGGTGCCTCAGATATGCGG
Found at i:82865748 original size:43 final size:42
Alignment explanation
Indices: 82865484--82865802 Score: 270
Period size: 42 Copynumber: 7.5 Consensus size: 42
82865474 TGCCTCAGAT
* * *
82865484 GTGCGGGAGCCTTGGATACCATCGGCAAACTAGGCCCTTGGTT
1 GTGCGGGAGCCTTGG-CACCATCGGCAACCTAGGCCCTTGGTC
* * * ***
82865527 GTGCGGGAGCCTCGAGCACCATCGG-TACCTTGGTGGTTGGAT-
1 GTGCGGGAGCCTTG-GCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * *
82865569 GTACGAGAGCCTCGGCACCATCGGGAACCTAAGCCCTTGGTC
1 GTGCGGGAGCCTTGGCACCATCGGCAACCTAGGCCCTTGGTC
*
82865611 GTGCGGGAGCCTCGAGCACCATCGGC-ACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTTG-GCACCATCGGCAACCTAGGCCCTTGGTC
* * * * **
82865653 GTGCGGGAGCCTCGGGCACCATTGGC-ACGTTGGTGCTTGGAT-
1 GTGCGGGAGCCT-TGGCACCATCGGCAACCTAGGCCCTTGG-TC
* **
82865695 GTGCGGGAGCCTTGGACACCATTGGCAACCTAGGCCCTTCTTC
1 GTGCGGGAGCCTTGG-CACCATCGGCAACCTAGGCCCTTGGTC
* * * *
82865738 GTGCGGGAGCCTCAGGCACCATCGGCAAACTAGGCCTTTGGTT
1 GTGCGGGAGCCT-TGGCACCATCGGCAACCTAGGCCCTTGGTC
82865781 GTGCGGGAGCCTTGGGCACCAT
1 GTGCGGGAGCCTT-GGCACCAT
82865803 GGTTGGATGT
Statistics
Matches: 223, Mismatches: 41, Indels: 24
0.77 0.14 0.08
Matches are distributed among these distances:
41 13 0.06
42 112 0.50
43 95 0.43
44 3 0.01
ACGTcount: A:0.16, C:0.29, G:0.34, T:0.21
Consensus pattern (42 bp):
GTGCGGGAGCCTTGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:82865843 original size:115 final size:116
Alignment explanation
Indices: 82865689--82865917 Score: 325
Period size: 115 Copynumber: 2.0 Consensus size: 116
82865679 ACGTTGGTGC
* * ** * *
82865689 TTGGATGTGCGGGAGCCTTGGACACCATTGGCAACCTAGGCCCTTCTTCGTGCGGGAGCCTCAGG
1 TTGGATGTGCGAGAGCCTTCGACACCATCAGCAACCTAGGCCATTCGTCGTGCGGGAGCCTCAGG
* * * *
82865754 CACCATCGGCAAACTAGGCCTTTGGTTGTGCGGGAGCCTTGGGCACCATGG
66 CACCATCGGCAAACTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATGG
* *
82865805 TTGGATGTGCGAGAGCC-TCGACACCATCAGCAACCTAGGCCATTGGTCGTGCGGGAGCCTCGGG
1 TTGGATGTGCGAGAGCCTTCGACACCATCAGCAACCTAGGCCATTCGTCGTGCGGGAGCCTCAGG
* *
82865869 CACCATCGGTAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCAT
66 CACCATCGGCAAACTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCAT
82865918 CGGTAATCTA
Statistics
Matches: 99, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
115 83 0.84
116 16 0.16
ACGTcount: A:0.17, C:0.29, G:0.33, T:0.21
Consensus pattern (116 bp):
TTGGATGTGCGAGAGCCTTCGACACCATCAGCAACCTAGGCCATTCGTCGTGCGGGAGCCTCAGG
CACCATCGGCAAACTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATGG
Found at i:82865857 original size:72 final size:73
Alignment explanation
Indices: 82865738--82865874 Score: 204
Period size: 72 Copynumber: 1.9 Consensus size: 73
82865728 GCCCTTCTTC
* * * * * *
82865738 GTGCGGGAGCCTCAGGCACCATCGGCAAACTAGGCCTTTGGTTGTGCGGGAGCCTTGGGCACCAT
1 GTGCGAGAGCCTCAGACACCATCAGCAAACTAGGCCATTGGTCGTGCGGGAGCCTCGGGCACCAT
82865803 GGTTGGAT
66 GGTTGGAT
*
82865811 GTGCGAGAGCCTC-GACACCATCAGCAACCTAGGCCATTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGAGAGCCTCAGACACCATCAGCAAACTAGGCCATTGGTCGTGCGGGAGCCTCGGGCACCAT
82865875 CGGTAACCTA
Statistics
Matches: 57, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
72 45 0.79
73 12 0.21
ACGTcount: A:0.18, C:0.28, G:0.34, T:0.19
Consensus pattern (73 bp):
GTGCGAGAGCCTCAGACACCATCAGCAAACTAGGCCATTGGTCGTGCGGGAGCCTCGGGCACCAT
GGTTGGAT
Found at i:82865884 original size:43 final size:42
Alignment explanation
Indices: 82865811--82866002 Score: 258
Period size: 43 Copynumber: 4.5 Consensus size: 42
82865801 ATGGTTGGAT
* * * *
82865811 GTGCGAGAGCCTCGACACCATCAGCAACCTAGGCCATTGGTC
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
*
82865853 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
82865896 GTGCAGGAGCCTCGGGCACCATCGGTAATCTAGGCCCTTGGTC
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTC
* *
82865939 GTGCGGGAGCCTCGGCACCATCGACAACCTAAGCCCTTGGTC
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
*
82865981 GTGCGGGAGCCTCATGCACCAT
1 GTGCGGGAGCCTC-GGCACCAT
82866003 AAGAACCTAG
Statistics
Matches: 135, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
42 50 0.37
43 85 0.63
ACGTcount: A:0.18, C:0.33, G:0.31, T:0.18
Consensus pattern (42 bp):
GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:82865977 original size:85 final size:85
Alignment explanation
Indices: 82865817--82866014 Score: 265
Period size: 85 Copynumber: 2.3 Consensus size: 85
82865807 GGATGTGCGA
* **
82865817 GAGCCTCGACACCATCAGCAACCTAGGCCATTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAAC
1 GAGCCTCGGCACCATCAGCAACCTAGGCCATTGGTCGTGCGGGAGCCTCGGGCACCATCGACAAC
*
82865882 CTAGGCCCTTGGTCGTGCAG
66 CTAAGCCCTTGGTCGTGCAG
* * * *
82865902 GAGCCTCGGGCACCATCGGTAATCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGACAA
1 GAGCCTC-GGCACCATCAGCAACCTAGGCCATTGGTCGTGCGGGAGCCTCGGGCACCATCGACAA
*
82865966 CCTAAGCCCTTGGTCGTGCGG
65 CCTAAGCCCTTGGTCGTGCAG
* *
82865987 GAGCCTCATGCACCATAAG-AACCTAGGC
1 GAGCCTC-GGCACCATCAGCAACCTAGGC
82866015 ACTTAGTAGA
Statistics
Matches: 98, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
84 8 0.08
85 53 0.54
86 37 0.38
ACGTcount: A:0.20, C:0.33, G:0.30, T:0.18
Consensus pattern (85 bp):
GAGCCTCGGCACCATCAGCAACCTAGGCCATTGGTCGTGCGGGAGCCTCGGGCACCATCGACAAC
CTAAGCCCTTGGTCGTGCAG
Found at i:82866041 original size:85 final size:86
Alignment explanation
Indices: 82865860--82866046 Score: 216
Period size: 85 Copynumber: 2.2 Consensus size: 86
82865850 GTCGTGCGGG
** * * ** *
82865860 AGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGTAAT
1 AGCCTCGGGCACCATCGACAACCTAAGCCCTTGGTCGTGCAGGAGCCTCAGGCACCATAAGTAAC
* * * ** * *
82865925 CTAGGCCCTTGGTCGTGCGGG
66 CTAGGCACTTAGTAGAACAGA
* *
82865946 AGCCTC-GGCACCATCGACAACCTAAGCCCTTGGTCGTGCGGGAGCCTCATGCACCATAAG-AAC
1 AGCCTCGGGCACCATCGACAACCTAAGCCCTTGGTCGTGCAGGAGCCTCAGGCACCATAAGTAAC
82866009 CTAGGCACTTAGTAGAACAGA
66 CTAGGCACTTAGTAGAACAGA
82866030 AGCCTCGGGCACCATCG
1 AGCCTCGGGCACCATCG
82866047 GCACCTTGGT
Statistics
Matches: 84, Mismatches: 16, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
84 22 0.26
85 56 0.67
86 6 0.07
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.18
Consensus pattern (86 bp):
AGCCTCGGGCACCATCGACAACCTAAGCCCTTGGTCGTGCAGGAGCCTCAGGCACCATAAGTAAC
CTAGGCACTTAGTAGAACAGA
Found at i:82867519 original size:79 final size:81
Alignment explanation
Indices: 82867417--82867601 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
82867407 GCTCCTCGTT
* *
82867417 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
82867480 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
82867497 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
82867561 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
82867577 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
82867602 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:82867601 original size:40 final size:40
Alignment explanation
Indices: 82867417--82867601 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
82867407 GCTCCTCGTT
* *
82867417 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
82867457 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
82867497 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
82867536 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
82867577 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
82867602 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:82869317 original size:43 final size:43
Alignment explanation
Indices: 82869258--82869573 Score: 279
Period size: 43 Copynumber: 7.4 Consensus size: 43
82869248 GGATGTGGGG
* * * *
82869258 GAGCCTCAGGCACCATCGACAACCTAGTCCCTTTGTCGTGCGG
1 GAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGA
* * * *
82869301 GAGCCTCGGGTACCATCGGCCACCTAGG-CCTTGGTCATGCGA
1 GAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGA
* ** * ** *
82869343 GAGCCTCGGGCATCATCG-GTACCTTGGTACTTGGAT-GTGCGG
1 GAGCCTCGGGCACCATCGACAACCTAGGCCCTTGG-TCGTGCGA
* * *
82869385 GAGCCTCGGACACCATCGAGAACTTAGGCCCTTGGTCGTGCGA
1 GAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGA
* * *
82869428 GACCCTCGGGCACCATCGATAACCTAGGCCCTTGGTCGTGAGA
1 GAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGA
* * * **
82869471 GAGCCTCGGGCACCATCGGC-ACATTGGTGCTTGGAT-GTGC-A
1 GAGCCTCGGGCACCATCGACAACCTAGGCCCTTGG-TCGTGCGA
**
82869512 GGAGCCTCAAGCACCATCTG-CAACCTAGGCCCTTGGTCGTGCTG-
1 -GAGCCTCGGGCACCATC-GACAACCTAGGCCCTTGGTCGTGC-GA
82869556 GAGCCTCGGGCACCATCG
1 GAGCCTCGGGCACCATCG
82869574 GCACCTTGGT
Statistics
Matches: 217, Mismatches: 45, Indels: 23
0.76 0.16 0.08
Matches are distributed among these distances:
41 7 0.03
42 84 0.39
43 126 0.58
ACGTcount: A:0.18, C:0.31, G:0.30, T:0.20
Consensus pattern (43 bp):
GAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGA
Found at i:82869504 original size:85 final size:85
Alignment explanation
Indices: 82869258--82869583 Score: 324
Period size: 85 Copynumber: 3.8 Consensus size: 85
82869248 GGATGTGGGG
* * *
82869258 GAGCCTCAGGCACCATCGACAACCTAGTCCCTTTGTCGTGCGGGAGCCTCGGGTACCATCGGCCA
1 GAGCCTCAGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CA
* *
82869323 CCTAGG-CCTTGGTCATGCGA
65 CCTTGGTCCTTGGTCGTGCGA
* * ** * ** *
82869343 GAGCCTCGGGCATCATCG-GTACCTTGGTACTTGGAT-GTGCGGGAGCCTCGGACACCATCGAG-
1 GAGCCTCAGGCACCATCGACAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCG-GC
* *
82869405 AACTTAGGCCCTTGGTCGTGCGA
64 ACCTT-GGTCCTTGGTCGTGCGA
* * * * *
82869428 GACCCTCGGGCACCATCGATAACCTAGGCCCTTGGTCGTGAGAGAGCCTCGGGCACCATCGGCAC
1 GAGCCTCAGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* *
82869493 ATTGGTGCTTGGAT-GTGC-A
66 CTTGGTCCTTGG-TCGTGCGA
* *
82869512 GGAGCCTCAAGCACCATCTG-CAACCTAGGCCCTTGGTCGTGCTGGAGCCTCGGGCACCATCGGC
1 -GAGCCTCAGGCACCATC-GACAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
82869576 ACCTTGGT
64 ACCTTGGT
82869584 GCCTCGGATG
Statistics
Matches: 195, Mismatches: 36, Indels: 20
0.78 0.14 0.08
Matches are distributed among these distances:
83 3 0.02
84 34 0.17
85 121 0.62
86 37 0.19
ACGTcount: A:0.18, C:0.31, G:0.30, T:0.21
Consensus pattern (85 bp):
GAGCCTCAGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
CTTGGTCCTTGGTCGTGCGA
Found at i:82869518 original size:128 final size:126
Alignment explanation
Indices: 82869243--82869573 Score: 416
Period size: 128 Copynumber: 2.6 Consensus size: 126
82869233 GGCTGTCACA
* * *
82869243 TGCTTGGATGTGGGGGAGCCTCAGG-CACCATCGACAACCTAGTCCCTTTGTCGTGCGGGAGCCT
1 TGCTTGGATGTGCGGGAGCCTC-GGACACCATCGACAACCTAGGCCCTTGGTCGTGC-GGAGCCT
* * * * * * *
82869307 CGGGTACCATCGGCCACCTAGGCCTTGGTCATGCGAGAGCCTCGGGCATCATCGGTACCTTGG
64 CGGGCACCATCGACAACCTAGGCCTTGGTCATGAGAGAGCCTCGGGCACCATCGGCACATTGG
* * * *
82869370 TACTTGGATGTGCGGGAGCCTCGGACACCATCGAGAACTTAGGCCCTTGGTCGTGCGAGACCCTC
1 TGCTTGGATGTGCGGGAGCCTCGGACACCATCGACAACCTAGGCCCTTGGTCGTGCG-GAGCCTC
* *
82869435 GGGCACCATCGATAACCTAGGCCCTTGGTCGTGAGAGAGCCTCGGGCACCATCGGCACATTGG
65 GGGCACCATCGACAACCTAGG-CCTTGGTCATGAGAGAGCCTCGGGCACCATCGGCACATTGG
* *
82869498 TGCTTGGATGTGCAGGAGCCTC-AAGCACCATCTG-CAACCTAGGCCCTTGGTCGTGCTGGAGCC
1 TGCTTGGATGTGCGGGAGCCTCGGA-CACCATC-GACAACCTAGGCCCTTGGTCGTGC-GGAGCC
82869561 TCGGGCACCATCG
63 TCGGGCACCATCG
82869574 GCACCTTGGT
Statistics
Matches: 176, Mismatches: 22, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
126 3 0.02
127 71 0.40
128 100 0.57
129 2 0.01
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.21
Consensus pattern (126 bp):
TGCTTGGATGTGCGGGAGCCTCGGACACCATCGACAACCTAGGCCCTTGGTCGTGCGGAGCCTCG
GGCACCATCGACAACCTAGGCCTTGGTCATGAGAGAGCCTCGGGCACCATCGGCACATTGG
Found at i:82881815 original size:58 final size:58
Alignment explanation
Indices: 82881725--82881842 Score: 155
Period size: 58 Copynumber: 2.0 Consensus size: 58
82881715 CCCCCCAATC
* * * * *
82881725 CCAAAAGGTAGAATTTGGATACCATTACATGTTCGGTACCCAATAATAAATGAATCGT
1 CCAAAAGATAGAAATCGGATACCATTACATGTTCAGTACCCAACAATAAATGAATCGT
* * * *
82881783 CCAAAAGATAGAAATCGGATACCATTGCATGTTCAGTACCTAACCATGAATGAATCGT
1 CCAAAAGATAGAAATCGGATACCATTACATGTTCAGTACCCAACAATAAATGAATCGT
82881841 CC
1 CC
82881843 CTGTCCCTCC
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.25
Consensus pattern (58 bp):
CCAAAAGATAGAAATCGGATACCATTACATGTTCAGTACCCAACAATAAATGAATCGT
Found at i:82887537 original size:18 final size:18
Alignment explanation
Indices: 82887516--82887550 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
82887506 ATTGGGGTTG
82887516 ATAGATTGTGAGATGAAA
1 ATAGATTGTGAGATGAAA
82887534 ATAGATTGTGAGATGAA
1 ATAGATTGTGAGATGAA
82887551 CACATAATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.29, T:0.29
Consensus pattern (18 bp):
ATAGATTGTGAGATGAAA
Found at i:82887682 original size:43 final size:43
Alignment explanation
Indices: 82887611--82887796 Score: 214
Period size: 43 Copynumber: 4.3 Consensus size: 43
82887601 TTGGTATATG
* * *
82887611 CAATCATGCACTATGTGTGACAGTATATTTTCTTC-GATTTATC
1 CAATGATGCACTATGTGTGCCAGCATATTTTCTTCAG-TTTATC
* *
82887654 CGATGATGCACTGTGTGTGCCAGCATATTTTCTTCAGTTTATC
1 CAATGATGCACTATGTGTGCCAGCATATTTTCTTCAGTTTATC
* *
82887697 CAATGATGCACTATGTGTGCTAGTC-TATTTTCTTCAGCTTATC
1 CAATGATGCACTATGTGTGCCAG-CATATTTTCTTCAGTTTATC
* * * * ** *
82887740 TAATGATGCACTATATGTTCCAGTATAGATACTTCAGTTTATC
1 CAATGATGCACTATGTGTGCCAGCATATTTTCTTCAGTTTATC
82887783 CAATGATGCACTAT
1 CAATGATGCACTAT
82887797 ATATGCTAGT
Statistics
Matches: 121, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
43 119 0.98
44 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (43 bp):
CAATGATGCACTATGTGTGCCAGCATATTTTCTTCAGTTTATC
Found at i:82887775 original size:86 final size:85
Alignment explanation
Indices: 82887611--82887876 Score: 293
Period size: 86 Copynumber: 3.1 Consensus size: 85
82887601 TTGGTATATG
* * * *
82887611 CAATCATGCACTATGTGTGAC-AGTATATTTTCTTCGATTTATCCGATGATGCACTGTGTGTGCC
1 CAATGATGCACTATGTGTG-CTAGTATATTTTCTTCG-TTTATCTGATGATGCACTGTATGTTCC
* ** *
82887675 AGCATATTTTCTTCAGTTTATC
64 AGTATAGATACTTCAGTTTATC
* * * *
82887697 CAATGATGCACTATGTGTGCTAGTCTATTTTCTTCAGCTTATCTAATGATGCACTATATGTTCCA
1 CAATGATGCACTATGTGTGCTAGTATATTTTCTTC-GTTTATCTGATGATGCACTGTATGTTCCA
82887762 GTATAGATACTTCAGTTTATC
65 GTATAGATACTTCAGTTTATC
* * ** * * * *
82887783 CAATGATGCACTATATATGCTAGTATAGATACTTTGGTTTATATGATGATGCACTGTAT-TTGCT
1 CAATGATGCACTATGTGTGCTAGTATATTTTC-TTCGTTTATCTGATGATGCACTGTATGTT-CC
82887847 AGTATAGATACTTCAGTTTATC
64 AGTATAGATACTTCAGTTTATC
82887869 CAATGATG
1 CAATGATG
82887877 AGATGCTTCA
Statistics
Matches: 152, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
85 3 0.02
86 146 0.96
87 3 0.02
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (85 bp):
CAATGATGCACTATGTGTGCTAGTATATTTTCTTCGTTTATCTGATGATGCACTGTATGTTCCAG
TATAGATACTTCAGTTTATC
Found at i:82887797 original size:43 final size:43
Alignment explanation
Indices: 82887648--82887876 Score: 233
Period size: 43 Copynumber: 5.3 Consensus size: 43
82887638 TTTTCTTCGA
* * * * * ** *
82887648 TTTATCCGATGATGCACTGTGTGTGCCAGCATATTTTCTTCAG
1 TTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTCAG
* * ** *
82887691 TTTATCCAATGATGCACTATGTGTGCTAGTCTATTTTCTTCAG
1 TTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTCAG
* * * *
82887734 CTTATCTAATGATGCACTATATGTTCCAGTATAGATACTTCAG
1 TTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTCAG
* **
82887777 TTTATCCAATGATGCACTATATATGCTAGTATAGATACTTTGG
1 TTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTCAG
*** * *
82887820 TTTATATGATGATGCACTGTATTTGCTAGTATAGATACTTCAG
1 TTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTCAG
82887863 TTTATCCAATGATG
1 TTTATCCAATGATG
82887877 AGATGCTTCA
Statistics
Matches: 155, Mismatches: 31, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 155 1.00
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.41
Consensus pattern (43 bp):
TTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTCAG
Found at i:82887886 original size:25 final size:25
Alignment explanation
Indices: 82887852--82887901 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
82887842 TTGCTAGTAT
82887852 AGATACTTCAGTTTATCCAATGATG
1 AGATACTTCAGTTTATCCAATGATG
*
82887877 AGATGCTTCAGTTTATCCAATGATG
1 AGATACTTCAGTTTATCCAATGATG
82887902 CACTGTATGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (25 bp):
AGATACTTCAGTTTATCCAATGATG
Found at i:82887946 original size:43 final size:43
Alignment explanation
Indices: 82887899--82887998 Score: 166
Period size: 43 Copynumber: 2.3 Consensus size: 43
82887889 TTATCCAATG
* *
82887899 ATGCACTGTATGTGCCAGTATAGATATTTCAGA-TTATCTGATT
1 ATGCATTGTATGTGCCAGTATAGATACTTCA-ATTTATCTGATT
82887942 ATGCATTGTATGTGCCAGTATAGATACTTCAATTTATCTGATT
1 ATGCATTGTATGTGCCAGTATAGATACTTCAATTTATCTGATT
82887985 ATGCATTGTATGTG
1 ATGCATTGTATGTG
82887999 TTAGGATAAT
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
42 1 0.02
43 53 0.98
ACGTcount: A:0.27, C:0.13, G:0.19, T:0.41
Consensus pattern (43 bp):
ATGCATTGTATGTGCCAGTATAGATACTTCAATTTATCTGATT
Found at i:82887965 original size:111 final size:111
Alignment explanation
Indices: 82887766--82887979 Score: 304
Period size: 111 Copynumber: 1.9 Consensus size: 111
82887756 GTTCCAGTAT
* * *
82887766 AGATACTTCAGTTTATCCAATGATGCACTATATATGCTAGTATAGATACTTTGGTTTATATGATG
1 AGATACTTCAGTTTATCCAATGATGCACTATATATGCCAGTATAGATACTTTAGATTATATGATG
* * *
82887831 ATGCACTGTATTTGCTAGTATAGATACTTCAGTTTATCCAATGATG
66 ATGCACTGTATGTGCCAGTATAGATACTTCAATTTATCCAATGATG
* * * *
82887877 AGATGCTTCAGTTTATCCAATGATGCACTGTATGTGCCAGTATAGATA-TTTCAGATTATCTGAT
1 AGATACTTCAGTTTATCCAATGATGCACTATATATGCCAGTATAGATACTTT-AGATTATATGAT
* *
82887941 TATGCATTGTATGTGCCAGTATAGATACTTCAATTTATC
65 GATGCACTGTATGTGCCAGTATAGATACTTCAATTTATC
82887980 TGATTATGCA
Statistics
Matches: 90, Mismatches: 12, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
110 3 0.03
111 87 0.97
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.39
Consensus pattern (111 bp):
AGATACTTCAGTTTATCCAATGATGCACTATATATGCCAGTATAGATACTTTAGATTATATGATG
ATGCACTGTATGTGCCAGTATAGATACTTCAATTTATCCAATGATG
Found at i:82892271 original size:47 final size:47
Alignment explanation
Indices: 82892201--82892331 Score: 172
Period size: 47 Copynumber: 2.8 Consensus size: 47
82892191 TACAATCGAT
* *
82892201 AAGTACCTATACCATGGCTCGTAGCCAAATCAAGGTAACTTATCCCA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCA
* * *
82892248 GAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCCTCTCA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCA
* * * * *
82892295 AAATACCTATATCAAGGCCTGTAGCCAAATCTAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
82892332 TTATTCCACC
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCA
Found at i:82895898 original size:12 final size:11
Alignment explanation
Indices: 82895882--82895911 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
82895872 GTATATTTTA
82895882 TTTTATATATT
1 TTTTATATATT
82895893 TCTTTATATATT
1 T-TTTATATATT
82895905 TTTTATA
1 TTTTATA
82895912 AAATTGTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTATATATT
Found at i:82896347 original size:14 final size:14
Alignment explanation
Indices: 82896328--82896357 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
82896318 TCTATCTTTC
*
82896328 TTATATATTTTTTA
1 TTATATATTATTTA
82896342 TTATATATTATTTA
1 TTATATATTATTTA
82896356 TT
1 TT
82896358 TTGTTTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TTATATATTATTTA
Found at i:82896432 original size:5 final size:5
Alignment explanation
Indices: 82896407--82896463 Score: 53
Period size: 5 Copynumber: 11.0 Consensus size: 5
82896397 CAAAATACTA
* * *
82896407 ATTAT ATTCAT ATTAT TTTAT ATTAT ATT-T CCTTAT ATTTT ATTCAT
1 ATTAT ATT-AT ATTAT ATTAT ATTAT ATTAT -ATTAT ATTAT ATT-AT
82896454 ATTAT ATTAT
1 ATTAT ATTAT
82896464 TATATATAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
4 1 0.02
5 31 0.74
6 10 0.24
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (5 bp):
ATTAT
Found at i:82898513 original size:40 final size:40
Alignment explanation
Indices: 82898469--82898693 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
82898459 GCTCCTCGTT
* * *
82898469 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
82898509 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
82898549 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
82898589 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
82898628 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
82898669 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
82898694 CATCATTCAA
Statistics
Matches: 164, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 117 0.71
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:82898653 original size:119 final size:120
Alignment explanation
Indices: 82898471--82898693 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
82898461 TCCTCGTTCA
*
82898471 AATGCCTTCGGGACATAGCCCAGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCAGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
82898536 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * * **
82898591 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCAGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
82898653 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
82898694 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 65 0.73
120 20 0.22
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCAGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:82905770 original size:39 final size:40
Alignment explanation
Indices: 82905689--82905912 Score: 244
Period size: 39 Copynumber: 5.7 Consensus size: 40
82905679 GCTCCTCGTT
* *
82905689 CAAATGCCTTCGGGACATAGCCC-G-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
**
82905728 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-CATA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
82905767 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
82905807 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * *
82905846 CAAATGCCTTC-GGATCTTAGTCCGGATATTGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAT-TTAGTAAC-TCGCA
*
82905888 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
82905913 CATCATTCAA
Statistics
Matches: 159, Mismatches: 18, Indels: 14
0.83 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 90 0.57
40 33 0.21
41 23 0.14
42 11 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:82905817 original size:79 final size:80
Alignment explanation
Indices: 82905689--82905912 Score: 253
Period size: 79 Copynumber: 2.8 Consensus size: 80
82905679 GCTCCTCGTT
* * *
82905689 CAAATGCCTTCGGGACATAGCCC-G-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCG
* *
82905752 GATTTAGTAAC-CATA
65 GAATTAGTAACTCACA
*
82905767 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGG
* *
82905831 AATTAGTATCTCGCA
66 AATTAGTAACTCACA
* * * * *
82905846 CAAATGCCTTC-GGATCTTAGTCCGGATATTGGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCACCAATGCCTTCGGGACTTAGCC
82905909 CGGA
63 CGGA
82905913 CATCATTCAA
Statistics
Matches: 125, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
78 41 0.33
79 49 0.39
80 20 0.16
81 15 0.12
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCACA
Found at i:82905871 original size:118 final size:120
Alignment explanation
Indices: 82905691--82905912 Score: 283
Period size: 118 Copynumber: 1.9 Consensus size: 120
82905681 TCCTCGTTCA
**
82905691 AATGCCTTCGGGACATAGCCCGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT-
1 AATGCCTTCGGGACATAGCCCGGAATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATA
*
82905755 TTAGTAACCATA-CA-AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 TTAGTAA-CATAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
82905809 AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACATAGCCCGGAA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
* * * *
82905872 TATTGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 TATTAGTAACATAGCACAAAGCCTTCGGGACTTAACCCGGA
82905913 CATCATTCAA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
117 12 0.14
118 47 0.53
119 7 0.08
120 22 0.25
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGAATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATA
TTAGTAACATAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:82917035 original size:19 final size:19
Alignment explanation
Indices: 82917013--82917051 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
82917003 CAAAAATAAA
*
82917013 AAAAAATAAAAAAAGGGAG
1 AAAAAAGAAAAAAAGGGAG
* *
82917032 AAAAAAGATAAAAATGGAG
1 AAAAAAGAAAAAAAGGGAG
82917051 A
1 A
82917052 GGCCAAGGAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.00, G:0.21, T:0.08
Consensus pattern (19 bp):
AAAAAAGAAAAAAAGGGAG
Found at i:82918288 original size:206 final size:206
Alignment explanation
Indices: 82917934--82918317 Score: 621
Period size: 206 Copynumber: 1.9 Consensus size: 206
82917924 GGCTAAAGCA
* * * * *
82917934 AGACACATAGCAGATCTAGCCTTCATATGTTTATATTGAAGCAGATCCAAGATGGTTTGGCATCA
1 AGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGGTTTGGCATCA
*
82917999 TTGTGCTTATAAGGAACAAATCAAAATCATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCA
66 TTGTGCTTACAAGGAACAAATCAAAATCATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCA
82918064 AATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATT
131 AATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATT
82918129 CGACGGAGGGC
196 CGACGGAGGGC
* * *
82918140 AGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCTAGATGGTTTGGTATCC
1 AGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGGTTTGGCATCA
* *
82918205 TTGTGCTTACAAGGAGCAAATCAAAGA-CATAGCTGATTTGG-TTTC-CGTGTGCTTACGCTGAA
66 TTGTGCTTACAAGGAACAAATCAAA-ATCATAGCTGATTTGGCTTTCAC--GTGCTTACGATGAA
82918267 GCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
128 GCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
82918318 AAACAGATTT
Statistics
Matches: 164, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
204 1 0.01
205 4 0.02
206 158 0.96
207 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (206 bp):
AGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGGTTTGGCATCA
TTGTGCTTACAAGGAACAAATCAAAATCATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCA
AATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATT
CGACGGAGGGC
Found at i:82919970 original size:28 final size:28
Alignment explanation
Indices: 82919939--82919994 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
82919929 TTTCTAATTA
* * *
82919939 AATTCAATTTTAATCCTTTTTATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
* *
82919967 AATTTACTTTAAATACTTTATATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
82919995 TTATAAATAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (28 bp):
AATTCAATTTAAATACTTTATATATTTT
Found at i:82920101 original size:12 final size:11
Alignment explanation
Indices: 82920085--82920114 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
82920075 GTATATTTTA
82920085 TTTTATATATT
1 TTTTATATATT
82920096 TCTTTATATATT
1 T-TTTATATATT
82920108 TTTTATA
1 TTTTATA
82920115 AAATTGTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTATATATT
Found at i:82920557 original size:14 final size:14
Alignment explanation
Indices: 82920538--82920567 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
82920528 TCTATCTTTC
*
82920538 TTATATATTTTTTA
1 TTATATATTATTTA
82920552 TTATATATTATTTA
1 TTATATATTATTTA
82920566 TT
1 TT
82920568 TTGTTTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TTATATATTATTTA
Found at i:82920630 original size:11 final size:10
Alignment explanation
Indices: 82920615--82920673 Score: 66
Period size: 10 Copynumber: 5.7 Consensus size: 10
82920605 TGTAAAATAC
82920615 TTATTATATT
1 TTATTATATT
82920625 CTTATTAT-TT
1 -TTATTATATT
82920635 TATATTATATT
1 T-TATTATATT
*
82920646 TTCTTATATT
1 TTATTATATT
82920656 TTATTCATATT
1 TTATT-ATATT
*
82920667 ATATTAT
1 TTATTAT
82920674 TATATATAAC
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
9 1 0.02
10 22 0.52
11 19 0.45
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (10 bp):
TTATTATATT
Found at i:82920670 original size:5 final size:5
Alignment explanation
Indices: 82920616--82920673 Score: 53
Period size: 5 Copynumber: 11.2 Consensus size: 5
82920606 GTAAAATACT
* * * * *
82920616 TATTA TATTCT TATTA TTTTA TATTA TATTT TCTTA TATTT TATTCA TATTA
1 TATTA TATT-A TATTA TATTA TATTA TATTA TATTA TATTA TATT-A TATTA
82920668 TATTA T
1 TATTA T
82920674 TATATATAAC
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
5 33 0.80
6 8 0.20
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (5 bp):
TATTA
Found at i:82922298 original size:16 final size:17
Alignment explanation
Indices: 82922277--82922311 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
82922267 CTTTGGGAGA
82922277 GTCACAC-GCCCGTGTG
1 GTCACACAGCCCGTGTG
82922293 GTCACACATGCCCGTGTG
1 GTCACACA-GCCCGTGTG
82922311 G
1 G
82922312 CTTGAGACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
18 10 0.59
ACGTcount: A:0.14, C:0.34, G:0.31, T:0.20
Consensus pattern (17 bp):
GTCACACAGCCCGTGTG
Found at i:82923643 original size:18 final size:18
Alignment explanation
Indices: 82923606--82923645 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
82923596 ATGAATGAAT
* **
82923606 AATATAACAAGACATTAC
1 AATAAAACAAGACAAAAC
82923624 AATAAAACAAGACAAAAC
1 AATAAAACAAGACAAAAC
82923642 AATA
1 AATA
82923646 CACACGATAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.65, C:0.15, G:0.05, T:0.15
Consensus pattern (18 bp):
AATAAAACAAGACAAAAC
Found at i:82930748 original size:22 final size:23
Alignment explanation
Indices: 82930718--82930771 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 23
82930708 TGGACTTTTA
82930718 TTGGTTTTTATCTTA-ATTTATTT
1 TTGGTTTTTAT-TTATATTTATTT
* *
82930741 TT-GTTTTTGTTTATTTTTATTT
1 TTGGTTTTTATTTATATTTATTT
82930763 TTGGTTTTT
1 TTGGTTTTT
82930772 CTCTAACAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 3 0.11
22 16 0.59
23 8 0.30
ACGTcount: A:0.11, C:0.02, G:0.11, T:0.76
Consensus pattern (23 bp):
TTGGTTTTTATTTATATTTATTT
Found at i:82930753 original size:16 final size:16
Alignment explanation
Indices: 82930734--82930765 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
82930724 TTTATCTTAA
*
82930734 TTTATTTTTGTTTTTG
1 TTTATTTTTATTTTTG
82930750 TTTATTTTTATTTTTG
1 TTTATTTTTATTTTTG
82930766 GTTTTTCTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.00, G:0.09, T:0.81
Consensus pattern (16 bp):
TTTATTTTTATTTTTG
Found at i:82931388 original size:43 final size:45
Alignment explanation
Indices: 82931317--82931412 Score: 133
Period size: 43 Copynumber: 2.2 Consensus size: 45
82931307 ACTGCTTAGG
* *
82931317 AAGATAAGATCTTCAATCTTCAATCTGCTTTCTTGCTACCTCAAA
1 AAGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAAA
* *
82931362 AAGATAAGA-C-TCCATCTTCAACCTGCTCTCTTGCTACCTCAGA
1 AAGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAAA
*
82931405 GAGATAAG
1 AAGATAAG
82931413 GCTAGTGGTA
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
43 36 0.78
44 1 0.02
45 9 0.20
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.30
Consensus pattern (45 bp):
AAGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAAA
Found at i:82931411 original size:176 final size:175
Alignment explanation
Indices: 82931109--82931458 Score: 418
Period size: 176 Copynumber: 2.0 Consensus size: 175
82931099 CTCCATTGCC
*
82931109 GTCATCTCCAATCTGCCCCGCTACTGCTTAGGGAAATAAGATATTCAATCTTCAGTCTGCTTCCT
1 GTCATCTCCAATCTGCCCCGCTACTGCTTAGGGAAATAAGATATTCAATCTTCAATCTGCTTCCT
* ** ** * * * *
82931174 TGCTATCTCAGGAAGATAAGACTTGTATATGAGCCTACTCCATTGCAACTTCAGGGAGATAAGGC
66 TGCTACCTCAAAAAGATAAGACTTCCATATCAACCTACTCCATTGCAACCTCAGAGAGATAAGGC
* * **
82931239 TGGTAACTTAAATCTGCTCCATTGCCGGTACATAGAGATAAGATTT
131 TAGT-ACTAAAATCTGCTCCATTGCCAATACATAGAGATAAGATTT
* * * *
82931285 GTCATCTCCGATCTGCTCCGCTACTGCTTA-GGAAGATAAGATCTTCAATCTTCAATCTGCTTTC
1 GTCATCTCCAATCTGCCCCGCTACTGCTTAGGGAA-ATAAGATATTCAATCTTCAATCTGCTTCC
* * *
82931349 TTGCTACCTCAAAAAGATAAGAC-TCCATCTTCAACCTGCTCTC-TTGCTACCTCAGAGAGATAA
65 TTGCTACCTCAAAAAGATAAGACTTCCAT-ATCAACCTACTC-CATTGCAACCTCAGAGAGATAA
** * *
82931412 GGCTAGTGGTAAAATTTGCTCTATTGCCAATACATAGAGATAAGATT
128 GGCTAGTACTAAAATCTGCTCCATTGCCAATACATAGAGATAAGATT
82931459 CACCATTTTC
Statistics
Matches: 146, Mismatches: 25, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
175 40 0.27
176 105 0.72
177 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (175 bp):
GTCATCTCCAATCTGCCCCGCTACTGCTTAGGGAAATAAGATATTCAATCTTCAATCTGCTTCCT
TGCTACCTCAAAAAGATAAGACTTCCATATCAACCTACTCCATTGCAACCTCAGAGAGATAAGGC
TAGTACTAAAATCTGCTCCATTGCCAATACATAGAGATAAGATTT
Found at i:82932699 original size:53 final size:49
Alignment explanation
Indices: 82932634--82932787 Score: 168
Period size: 53 Copynumber: 3.0 Consensus size: 49
82932624 CTTTTTATTT
*
82932634 CTTTTTTATTATTGAGTCTCAAAGCGCCCTTTGCGCGTTTTCACTTTGGGC
1 CTTTTTT-TTATTGAGTCTCAAAGCGCCCTTTGCG-GTTTTCACTTTGGCC
* *
82932685 CTTTCCATTTTTATTTG-GTCTCAAAGTGACCTTTGCGGGTTTTCACTTTGGCC
1 CTTT---TTTTTA-TTGAGTCTCAAAGCGCCCTTTGC-GGTTTTCACTTTGGCC
*
82932738 CTTTTTTTT-TTGAAAGTCTCAAAGCGCCCTTTGCAGGTTTTCATTTTGGC
1 CTTTTTTTTATTG--AGTCTCAAAGCGCCCTTTGC-GGTTTTCACTTTGGC
82932788 TTCCTTCCCT
Statistics
Matches: 88, Mismatches: 7, Indels: 16
0.79 0.06 0.14
Matches are distributed among these distances:
48 3 0.03
50 5 0.06
51 35 0.40
53 38 0.43
54 7 0.08
ACGTcount: A:0.14, C:0.22, G:0.19, T:0.45
Consensus pattern (49 bp):
CTTTTTTTTATTGAGTCTCAAAGCGCCCTTTGCGGTTTTCACTTTGGCC
Found at i:82932769 original size:51 final size:51
Alignment explanation
Indices: 82932636--82932787 Score: 166
Period size: 51 Copynumber: 2.9 Consensus size: 51
82932626 TTTTATTTCT
* *
82932636 TTTTTATTATTGAGTCTCAAAGCGCCCTTTGCGCGTTTTCACTTTGGGCCTTTCC
1 TTTTTA-T-TTGAGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTT-GGCCCTT-C
* *
82932691 ATTTTTATTTG-GTCTCAAAGTGACCTTTGCGGGTTTTCACTTTGGCCCTT-
1 -TTTTTATTTGAGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGCCCTTC
* *
82932741 TTTTT-TTTGAAAGTCTCAAAGCGCCCTTTGCAGGTTTTCATTTTGGC
1 TTTTTATTTG--AGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGC
82932788 TTCCTTCCCT
Statistics
Matches: 85, Mismatches: 8, Indels: 11
0.82 0.08 0.11
Matches are distributed among these distances:
48 4 0.05
49 5 0.06
51 31 0.36
52 6 0.07
53 29 0.34
54 3 0.04
55 1 0.01
56 6 0.07
ACGTcount: A:0.14, C:0.22, G:0.19, T:0.45
Consensus pattern (51 bp):
TTTTTATTTGAGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGCCCTTC
Found at i:82944186 original size:231 final size:230
Alignment explanation
Indices: 82943779--82944238 Score: 893
Period size: 231 Copynumber: 2.0 Consensus size: 230
82943769 ACACTTTTAA
82943779 AATTATGATGAATTAATGGACACATAATATAAGTTGACAAGTTTGTATAAAAACTAGGGATATAC
1 AATTATGATGAATTAATGGACACATAATATAAGTTGACAAGTTTGTATAAAAACTAGGGATATAC
82943844 AATTATTTGAAATAAATATTGTAGAATAAAACATTTGAATTGAATAATATGCAAAATATTTTAAG
66 AATTATTTGAAATAAATATTGTAGAATAAAACATTTGAATTGAATAATATGCAAAATATTTTAAG
82943909 CACAAATTCATTTAAAAATTGACATCATGCATGATAGCTTAAATAACATACAAATATAAAAGAAT
131 CACAAATTCATTTAAAAATTGACATCATGCATGATAGCTTAAATAACATACAAATATAAAAGAAT
82943974 AATAAAACACATGATAAGATATAATTTATAAAGGG
196 AATAAAACACATGATAAGATATAATTTATAAAGGG
82944009 AATTAATGATGAATTAATGGACACATAATATAAGTTGACAAGTTTGTATAAAAACTAGGGATATA
1 AATT-ATGATGAATTAATGGACACATAATATAAGTTGACAAGTTTGTATAAAAACTAGGGATATA
*
82944074 TAATTATTTGAAATAAATATTGTAGAATAAAACATTTGAATTGAATAATATGCAAAATATTTTAA
65 CAATTATTTGAAATAAATATTGTAGAATAAAACATTTGAATTGAATAATATGCAAAATATTTTAA
*
82944139 GCACAAATTCATTTAAAAATTGACATCATGCATGATAGCTTAAATAACATACAAATATAAAGGAA
130 GCACAAATTCATTTAAAAATTGACATCATGCATGATAGCTTAAATAACATACAAATATAAAAGAA
82944204 TAATAAAACACATGATAAGATATAATTTATAAAGG
195 TAATAAAACACATGATAAGATATAATTTATAAAGG
82944239 TAAAAACTAT
Statistics
Matches: 227, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
230 4 0.02
231 223 0.98
ACGTcount: A:0.49, C:0.08, G:0.12, T:0.31
Consensus pattern (230 bp):
AATTATGATGAATTAATGGACACATAATATAAGTTGACAAGTTTGTATAAAAACTAGGGATATAC
AATTATTTGAAATAAATATTGTAGAATAAAACATTTGAATTGAATAATATGCAAAATATTTTAAG
CACAAATTCATTTAAAAATTGACATCATGCATGATAGCTTAAATAACATACAAATATAAAAGAAT
AATAAAACACATGATAAGATATAATTTATAAAGGG
Found at i:82946071 original size:16 final size:16
Alignment explanation
Indices: 82946052--82946083 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
82946042 TTTATCTTAA
*
82946052 TTTATTTTTGTTTTTG
1 TTTATTTTGGTTTTTG
82946068 TTTATTTTGGTTTTTG
1 TTTATTTTGGTTTTTG
82946084 GTTTTTCTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.00, G:0.16, T:0.78
Consensus pattern (16 bp):
TTTATTTTGGTTTTTG
Found at i:82948757 original size:512 final size:512
Alignment explanation
Indices: 82947717--82953378 Score: 9143
Period size: 510 Copynumber: 11.1 Consensus size: 512
82947707 ACCCTTTGTC
* * * * * **
82947717 CAATCCTCATGGTCAAAACTTACTTGTAGTCGCAAATTTTCCAAAGTATGTTGTGTTTGTACGGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAATGC
* *
82947782 CATAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCTGGTGAAAGCTAGGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
82947847 CGGGTTTACTAGTCATTTCTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGTAAATA
131 CGGGTTTACTAGTCATTTCTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGTAAATA
82947912 ATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATA-TTTTTGGTTA
196 ATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTA
*
82947976 AAATAAATATTTTATTGAAAAATAAATT-AAATGGGGTTTCATTGAGAGAAGTTACAATATTAAC
261 AAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAAC
* *
82948040 TAAATAGGTATATAATATTCCGGAAAATTAAAATATTTTTAGAAAAATATC-CCAGATATCATGA
326 TAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGA-ATATCATGA
* * *
82948104 ATACAAATACCCCTATCCATTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT
390 ATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT
* * * *
82948169 CCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATTTTTTAAAGAAGCTCGTCGATCA
455 CCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
* * * *
82948227 CAATCCTAATTGTCCAAACCGACTTGTAATCGAAAAATTTCCAAAGTATGTTGTGTTTGTAACGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAATGC
* * *
82948292 CCTAAAAATAGGTCTACTACTTTTGAGTAAATTTCTCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
* * *
82948357 CGGGTTTACTACTCATTTCTTTAAAAAAAATAGTTAGCTTAATTTCATTAAAAAACCGGTAAATA
131 CGGGTTTACTAGTCATTTCTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGTAAATA
*
82948422 ATATTCCGGAAAATAAAAATATTTTTAGATAAATCAATTTTATGGTTTTAAATATTTTTTGGTTA
196 ATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTA
* * *
82948487 AAACAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAATACTAAC
261 AAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAAC
82948552 TAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTTA-AAAAATATCACGAATATCATGA
326 TAAATAGGTATATAATATTCCGGAAAATAAAAATA-TTTTTAGAAAAATATCACGAATATCATGA
* *
82948616 ATACTAATACCCCCATCCTTTTAGGCTAACACAAATTCTTCCACAGGAGTATCGCCCAATATTTT
390 ATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT
* * * *
82948681 CTTCTTTTCATTCCAGACCACCAAATTCTACTTATCTTTGATAGAAGCTCCTCGATCA
455 CCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
* *
82948739 CAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAGTATGTTGTGTTTGGAATGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAATGC
* * *
82948804 CCTAAAAATAGGTCTACAAGATTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAATTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
* * *
82948869 CGGGTTTACTAGTCATTTCTTTAAAAAAATTAGTTAACTTAATTTCATTTAAAAATCGGTAAATT
131 CGGGTTTACTAGTCATTTCTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGTAAATA
* * *
82948934 ATATTCTGGAAGATAAAAATATTTTTAGCGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTA
196 ATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTA
* *
82948999 AAATAAATATTTTATTGAAAAATAAAATAAAATGGGGTTTAATTAAGAGAAGTTACAATATTAAC
261 AAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAAC
* * *
82949064 TAAATAGGTATACAATATTCAGGAAAATAAAAATATTTTTAAAAAAATATCACGAATATCATGAA
326 TAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAA
*
82949129 TACTAATA-CCCCATCCTTTTAGGCTGACACAAATTCTTCCACAGGAGTATCGCCCAATATTTTC
391 TACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTC
* * * * *
82949193 TTCTATCCTTTCCAGACCACAAAATTCTGCTTATCTTTGATAGAAGCTCCGCGATCC
456 CTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
* *
82949250 CAATCCTAAATGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAATGC
*
82949315 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGAGTTCCGGGTGAAAGCTAGGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
* * *
82949380 CGGGTTTACTACTCACTTCTTT-AAAAAAATAGTTAGCTTAATTTCATTTAAAAATTGGTAAATA
131 CGGGTTTACTAGTCATTTCTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGTAAATA
* * * *
82949444 ATATTCCGAAAAATAACAATATTTTTAGACAAATCAATTTTATGGTTTTAAATATTTTGTGGTTA
196 ATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTA
82949509 AAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAAC
261 AAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAAC
82949574 TAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAA
326 TAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAA
* *
82949639 TACTAATACCCCTATCCTTTTAGGCTCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTC
391 TACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTC
* *
82949704 CTTTTTCCTTTCCAGACTACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
456 CTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
* * * *
82949761 CAATCCTAATTGTCCAAGCCTACTTCTAATCGCAAATTTTTCAAA-TAATGTTGTGTTTTTGAA-
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGT-ATGTTGTGTTTGT-AAT
* * *
82949824 GCCCTAAAAATTGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCGGGGCGAAAGCTAGGAGTTA
64 GCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTA
* * * *
82949889 ATCGAGTTTACTACTCATTTCTTTAAAAAATATTAGTTAGCTTAATTTCATTTGAAAATCGGTAA
129 ATCGGGTTTACTAGTCATTTCTTTAAAAAA-AATAGTTAGCTTAATTTCATTTAAAAATCGGTAA
* * *
82949954 ATAATATTCCAGAATAT-AAAATA--TTTAGAGAAATCAATTTTTTGGTTTTAAATATTTTTTGG
193 ATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGG
*
82950016 TTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATACT
258 TTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATT
*
82950081 AACTAAATAGGTATATAATATT-CTGAAAGATAAAAATATTTTTAGAAAAATATCACGAATATCA
323 AACTAAATAGGTATATAATATTCCGGAAA-ATAAAAATATTTTTAGAAAAATATCACGAATATCA
* *
82950145 TGAATACTAATACCCCCATCCATTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCTAATAT
387 TGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATAT
* *
82950210 TTTCCTCTCTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAACCTCCTCGATCA
452 TTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
82950271 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAATGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAATGC
*
82950336 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTATGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
* * * **
82950401 CGGGTTTACAAGTCATTT-TTAAAAAAAAAAATTAGTTAGCTTAATTTCATTTGAAAATCAATAA
131 CGGGTTTACTAGTCATTTCTT--TAAAAAAAA-TAGTTAGCTTAATTTCATTTAAAAATCGGTAA
* * * * *
82950465 ATAATATTTCGGAATATAAAAATATATTTATATAAATCAATTTTATGGTTTTAAATATTTTTTGG
193 ATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGG
* *
82950530 TAAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGATACAATATT
258 TTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATT
* *
82950595 AACTAAATAGGTATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCATGAATATCAT
323 AACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCAT
*
82950660 GAATACTAATACCTCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATT
388 GAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATT
*
82950725 TTCCTCTTTCCTTTCAAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
453 TTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
*
82950785 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGCGTTTGTAATGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAATGC
*
82950850 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCTGGGTGAAAGCTAGGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
* *
82950915 CGGGTTTACTACTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATTGGTAAAT
131 CGGGTTTACTAGTCATTTCTTTAAAAAAAA-TAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
* * * *
82950980 AATATTCCGGAAAATAACAATATTTTTAGAGAAAACAATATTATGGTTTTAAATATTTTTTGGTA
195 AATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
82951045 AAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAA
260 AAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAA
*
82951110 CTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAAAATCACGAATATCATGA
325 CTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGA
*
82951175 ATGCTAATACCCCCATCCTTTTAGGCTGACAC-AATTCCTTCCACGGGAGTATCGCCCAATATTT
390 ATACTAATACCCCCATCCTTTTAGGCTGACACAAATT-CTTCCACGGGAGTATCGCCCAATATTT
* *
82951239 TCCTCTTTCCTTTCCAGACGATCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
454 TCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
* *
82951298 CAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAGAATGTTGTGTTTGTGAA-G
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGT-AATG
* * * *
82951362 CCCTAAAAATAAGTCTACTAGTTTTGACTAAGTTTATC-GGTTCTGGGTGAAAACTAGGAGTTAA
65 CCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAA
* * * *
82951426 CCGGGTTTCCTAGTCATTTCTTTAAAAAAAATAGTTAGCTTCATTTCATTTAAAAATTGGTAAAT
130 TCGGGTTTACTAGTCATTTCTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
* *
82951491 AATATTCCGGAATATAAAAATATTTTTAGAGAAATCAATTTCATGGTTTTAAATATTTTTTGGTT
195 AATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
* * *
82951556 AAAA-AAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTAAGAAAAGTTACAATATTAA
260 AAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAA
* * **
82951620 CTAAAGAGGTATATAATATTCCAGAAAATTCAAATATTTTTAGAAAAATATCACGAATATCATGA
325 CTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGA
* *
82951685 ATACTAATACCCCCATCCTTTTAGGTTCACACAAATTCTTCCACGGGAGTATC-CCTCAATATTT
390 ATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCC-CAATATTT
*
82951749 TCCTCTTTCCTTTCCAGACCATCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
454 TCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
* *
82951808 CTATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCATAGTATGTTGTGTTTGTAATGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAATGC
*
82951873 CCTGAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
* **
82951938 TGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATTAGTAAAT
131 CGGGTTTACTAGTCATTTCTTTAAAAAAAA-TAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
82952003 AATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
195 AATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
* *
82952068 -AAA-AAATATTTTACTGAAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTAA
260 AAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAA
* * * *
82952131 CTAAAGAGGTATACAATATTCCGG--AA-AAAAATATTTTTAGAAAAATATCAGGAATATAATGA
325 CTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGA
* *
82952193 ATACTAATACCCCCATCCTTTTAGGCTCACACAAATTCTTCCACGGGAGTATCCCCCAATATTTT
390 ATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT
* ** *
82952258 TCTCTTTCCTTTCTGGACCACTAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
455 CCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
* * **
82952316 CAATCCTAATTGTCCAAACCTACTTCTAATCGCAAATTTTCCAAAGTATGTTATGTTTGTAACAC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAATGC
82952381 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
*
82952446 CGGGTTTACTAGTCATTTTTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGTAAATA
131 CGGGTTTACTAGTCATTTCTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGTAAATA
* * *
82952511 ATATTCCGGAAAATAACAATATTTTTAGAGAAATCAATTTCATGGTTTTAAATA-TTTTCGGTTA
196 ATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTA
* *
82952575 AAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTGAGTGAAGTTACAATATTAAC
261 AAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAAC
* * *
82952640 TAAATAGGTATATAATATTCTGGAAAATAAAAATATTTTAAAAAAAATATCACGAATATCATGAA
326 TAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAA
82952705 TACTAATA-CCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTC
391 TACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTC
82952769 CTCTTTCCTTTCCAGACCACCAAATTCTGCTTA--TTT-ATAGAAGCTCCT---T--
456 CTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
* **
82952818 --GTCC-AATTGTCCAAACCTACTTGTAATCTTAAATTTTCCAAAGTATGTTGTGTTTGTAATGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAATGC
*
82952880 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTATGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
* * *
82952945 CGGGTTTACAAGTCATTT-TTTAAAAAAAATTAGTTAGCTTAATTTCATGTGAAAATCGGTAAAT
131 CGGGTTTACTAGTCATTTCTTTAAAAAAAA-TAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
* *
82953009 AATATTCCGGAATATAAAAATATATTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
195 AATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
82953074 AAAA-AAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAA
260 AAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAA
* * * **
82953138 CTAAATAGGTATATAATATTCCGAAAAAT-AAATTTTTTTTTTAAAAATATCACGAATATCATGA
325 CTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGA
* *
82953202 ATACTAATACCCCTATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATAGTTT
390 ATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT
* *
82953267 CTTCTTTCCTTTCCAGAACACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
455 CCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
* *
82953325 CAATCCTAATTGTCCAAACCTACTTCTAATCGCAAACTTTCCAAAGTATGTTGT
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGT
82953379 AACACCCCGA
Statistics
Matches: 4784, Mismatches: 320, Indels: 96
0.92 0.06 0.02
Matches are distributed among these distances:
498 50 0.01
499 386 0.08
500 15 0.00
501 3 0.00
502 12 0.00
504 1 0.00
505 1 0.00
506 8 0.00
507 100 0.02
508 379 0.08
509 20 0.00
510 1316 0.28
511 856 0.18
512 729 0.15
513 482 0.10
514 419 0.09
515 7 0.00
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.36
Consensus pattern (512 bp):
CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAATGC
CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
CGGGTTTACTAGTCATTTCTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGTAAATA
ATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTA
AAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAAC
TAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAA
TACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTC
CTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
Found at i:82950022 original size:16 final size:17
Alignment explanation
Indices: 82949990--82950023 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
82949980 AGAGAAATCA
*
82949990 ATTTTTTGGTTTTAAAT
1 ATTTTTTGGTTTAAAAT
82950007 ATTTTTTGG-TTAAAAT
1 ATTTTTTGGTTTAAAAT
82950023 A
1 A
82950024 AATATTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.29, C:0.00, G:0.12, T:0.59
Consensus pattern (17 bp):
ATTTTTTGGTTTAAAAT
Found at i:82950541 original size:20 final size:19
Alignment explanation
Indices: 82950516--82950559 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
82950506 TTTATGGTTT
82950516 TAAATATTTT-TTGGTAAAAA
1 TAAATATTTTATT-G-AAAAA
82950536 TAAATATTTTATTGAAAAA
1 TAAATATTTTATTGAAAAA
82950555 TAAAT
1 TAAAT
82950560 TAAAATGGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 10 0.43
20 11 0.48
21 2 0.09
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (19 bp):
TAAATATTTTATTGAAAAA
Found at i:82950545 original size:19 final size:20
Alignment explanation
Indices: 82950516--82950559 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
82950506 TTTATGGTTT
82950516 TAAATATTTTT-TGGTAAAAA
1 TAAATATTTTTATGG-AAAAA
*
82950536 TAAATA-TTTTATTGAAAAA
1 TAAATATTTTTATGGAAAAA
82950555 TAAAT
1 TAAAT
82950560 TAAAATGGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (20 bp):
TAAATATTTTTATGGAAAAA
Found at i:82951066 original size:19 final size:20
Alignment explanation
Indices: 82951029--82951072 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
82951019 ATTATGGTTT
82951029 TAAATATTTTTTGGTAAAAA
1 TAAATATTTTTTGGTAAAAA
82951049 TAAATATTTTATT-G-AAAAA
1 TAAATATTTT-TTGGTAAAAA
82951068 TAAAT
1 TAAAT
82951073 TAAAATGGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 10 0.43
20 11 0.48
21 2 0.09
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (20 bp):
TAAATATTTTTTGGTAAAAA
Found at i:82954434 original size:27 final size:27
Alignment explanation
Indices: 82954404--82954495 Score: 116
Period size: 27 Copynumber: 3.4 Consensus size: 27
82954394 ATTACCAAAG
* *
82954404 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTATCGTTT
*
82954431 TACCCTCGATTTACAAAATTA-CTATTT
1 TACCCTCGATTTACAAAATTATC-GTTT
82954458 TACCCTC-AGTTTACAAAATTATCGTTT
1 TACCCTCGA-TTTACAAAATTATCGTTT
*
82954485 TACGCTCGATT
1 TACCCTCGATT
82954496 GTGAAATTAC
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
26 2 0.04
27 52 0.93
28 2 0.04
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTATCGTTT
Found at i:82954449 original size:54 final size:54
Alignment explanation
Indices: 82954391--82954495 Score: 131
Period size: 54 Copynumber: 1.9 Consensus size: 54
82954381 CTTGACTTGT
* *
82954391 AAAATTACCAAAGTACCCTC-GATTTATAGAATTATCGTTTTACCCTCGATTTAC
1 AAAATTACCAAAGTACCCTCAG-TTTACAAAATTATCGTTTTACCCTCGATTTAC
* *** *
82954445 AAAATTACTATTTTACCCTCAGTTTACAAAATTATCGTTTTACGCTCGATT
1 AAAATTACCAAAGTACCCTCAGTTTACAAAATTATCGTTTTACCCTCGATT
82954496 GTGAAATTAC
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
54 42 0.98
55 1 0.02
ACGTcount: A:0.32, C:0.21, G:0.09, T:0.38
Consensus pattern (54 bp):
AAAATTACCAAAGTACCCTCAGTTTACAAAATTATCGTTTTACCCTCGATTTAC
Found at i:82954577 original size:27 final size:26
Alignment explanation
Indices: 82954547--82954623 Score: 91
Period size: 27 Copynumber: 2.8 Consensus size: 26
82954537 ATATCACTGG
82954547 TTTGAGAAATTACCGAAATACCCCCAA
1 TTTGA-AAATTACCGAAATACCCCCAA
* *
82954574 TTTGTAAAATTACCAAAATACCCCTAA
1 TTTG-AAAATTACCGAAATACCCCCAA
* *
82954601 TTTACAAAATTACAGAAATACCC
1 TTT-GAAAATTACCGAAATACCC
82954624 TTGACTTTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
27 42 0.98
28 1 0.02
ACGTcount: A:0.44, C:0.23, G:0.06, T:0.26
Consensus pattern (26 bp):
TTTGAAAATTACCGAAATACCCCCAA
Done.