Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 256 of 290
Found at i:82955645 original size:25 final size:25
Alignment explanation
Indices: 82955609--82955678 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
82955599 AGGAAGTGCT
*
82955609 AAAAGGGCTCTGCCCCAGTTTACCG
1 AAAAGGGCTCTGCCCCAGTTTACCA
* * *
82955634 AAAAGGGATCTGCCACAGTTTATCA
1 AAAAGGGCTCTGCCCCAGTTTACCA
*
82955659 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTCTGCCCCAGTT
82955679 ATTAAAAGAG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.23
Consensus pattern (25 bp):
AAAAGGGCTCTGCCCCAGTTTACCA
Found at i:82955691 original size:24 final size:24
Alignment explanation
Indices: 82955659--82955705 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
82955649 CAGTTTATCA
**
82955659 AAAAGGGCTTTGCC-CCAGTTATT
1 AAAAGGGCTAGGCCTCCAGTTATT
82955682 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTAGGCCTCCAGTTAT
82955706 ATGATAAAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 7 0.35
25 8 0.40
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTAGGCCTCCAGTTATT
Found at i:82955882 original size:42 final size:42
Alignment explanation
Indices: 82955823--82955914 Score: 141
Period size: 42 Copynumber: 2.2 Consensus size: 42
82955813 AGTAGTCTCC
** *
82955823 AAATGGGCTTGCATACAT-TCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCT-ATTGACATTACATGTGATATTG
82955865 AAATGGGCTTGCATACATCTATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCTATTGACATTACATGTGATATTG
82955907 AAATGGGC
1 AAATGGGC
82955915 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 45 0.98
43 1 0.02
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCTATTGACATTACATGTGATATTG
Found at i:82955973 original size:31 final size:31
Alignment explanation
Indices: 82955938--82956047 Score: 202
Period size: 31 Copynumber: 3.5 Consensus size: 31
82955928 CGTTTACAAT
*
82955938 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATTTGATTTATGA
82955969 AAAGGCTTCGGCCCAGTGATTTGATTTATGA
1 AAAGGCTTCGGCCCAGTGATTTGATTTATGA
82956000 AAAGGCTTCGGCCCAGTGATTTGATTTATGA
1 AAAGGCTTCGGCCCAGTGATTTGATTTATGA
*
82956031 AAAGGCTTCGACCCAGT
1 AAAGGCTTCGGCCCAGT
82956048 AACCGTTAAA
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 77 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATTTGATTTATGA
Found at i:82958029 original size:17 final size:18
Alignment explanation
Indices: 82958003--82958044 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
82957993 TTAGAGAAAA
*
82958003 ATTTTATGG-TTTTAAAT
1 ATTTTTTGGTTTTTAAAT
82958020 ATTTTTTGGTTTTTAAAT
1 ATTTTTTGGTTTTTAAAT
82958038 ATTTTTT
1 ATTTTTT
82958045 TTTGGTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.24, C:0.00, G:0.10, T:0.67
Consensus pattern (18 bp):
ATTTTTTGGTTTTTAAAT
Found at i:82959026 original size:508 final size:512
Alignment explanation
Indices: 82956803--82960799 Score: 6288
Period size: 512 Copynumber: 7.8 Consensus size: 512
82956793 GGGTGTTACA
* * * *
82956803 TATGTTGTGTTTGTAAAGCCCTAAAAATATGTCTACTAGTTTTGGGTAAGTTTATCGGGTTCCGA
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
* *
82956868 GCGAAAGCTAGGAGTTAATCGGGTTTACTAGTAATTTCTTT-AAAAAAATTAGTTAGCTTAATTT
66 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
* * *
82956932 AATTTAAAAATCGGTAAATAATATTCCGGAATATAAAAATATTTTTAGAGAAATCAATTTTATGG
131 CATTTAAAAATCGGTAAATAATATTCCAGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
* ***
82956997 TTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAAGTAAAATGTTTTTTCATTG
196 TTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
* *
82957062 AGAGAAGTTACAATATTAACTAAATAGGTATATAATATTACGGAAAATAAAAATATTTTTAAAAA
261 AGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
*
82957127 AATATCACGAATATCATGAATACTAATACCCCAATCCTTTTAGGCTGACACAAATTCTTCCACGG
326 AATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGG
*
82957192 GAGTATCGCCCAATATTTTCCTCTTTCCATTCCAGACCACCAAATTCTGCTTATCTTTGATAGAA
391 GAGTATCGCCCAATATTTT-CTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAA
*
82957257 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATTACAAATTTTCCAAAG
455 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAG
* *
82957315 TATGTTGTGTTTATAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTA-CTGGGTTACG
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATC-GGGTTCCG
* *
82957379 GGTGAAAGCTAGGAGTTAATCGGGTTTACTACTCATTTCTTT-AAAAAAATTAATTAGCTTAATT
65 GGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATT
* * *
82957443 TCATTTAAAAATCTGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATG
130 TCATTTAAAAATCGGTAAATAATATTCCAGAAAATAAAAATATTTTTAGAGAAATCAATTTTATG
* *
82957508 GTTTT-AAT-TTGTTTTGGTTAAAATAAATATTTCATTGAAAAAAAAATTAAAATGGGGTTTCAT
195 GTTTTAAATATT-TTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCAT
*
82957571 TAAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGG-AAATAAAAATATTTTT--A
259 TGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGA
* * *
82957633 AAAATATCATGAACATCATGAATACTAATA-CCCCATCCTTTTAGGCTGACACAAATTCTTCCAA
324 AAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCAC
* *
82957697 GCGAGTATCGCCCAATATTTTTCTCTTTCCTTTCCAGACCACCAAATTTTGCTTATCTTTGATAG
389 GGGAGTATCGCCCAATA-TTTTCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAG
82957762 AAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAG
453 AAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAG
* * * *
82957822 TATGTAGTGTTTGTAATGCCTTAAAAATAGGTCTACTAGTTTTGCGTAAGTTTATCGGGTTCCGG
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
*
82957887 GT-AAATGCTAGGAGTTAATCGGGTTTACTACTCATTTCTTTAAAAAAAAAATTAGTTAGCTTAA
66 GTGAAA-GCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTT--AAAAAAAATTAGTTAGCTTAA
82957951 TTTCATTTAAAAATC-GTAAATAAT-TTCCAG-AAA-AAAAATA-TTTTAGAGAAAAATTTTATG
128 TTTCATTTAAAAATCGGTAAATAATATTCCAGAAAATAAAAATATTTTTAGAG---AA----A--
* * *
82958011 GTTTTAAATATTTTTTGGTTTTTAAATATTTTTTTTTGGTTAAAATAAATATTTTATTCAAAAAT
184 ----T-CA-ATTTTATGG-TTTTAAATA---TTTTTTGGTTAAAATAAATATTTTATTGAAAAAT
* * *
82958076 AAATTAAACTAGGGTTTCATTGAGAGAA-TTACAATATTAACTAAATAGGTATATAATATTCCAG
239 AAATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGG
*
82958140 AAAATAAAAATATTTTTAGAAAGATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAG
304 AAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAG
*
82958205 GCTGACACAAATTCTTCCAAGGGAGTATCGCCCAATATTTTTCTCTTTCCTTTCCAGACCACCAA
369 GCTGACACAAATTCTTCCACGGGAGTATCGCCCAATA-TTTTCTCTTTCCTTTCCAGACCACCAA
* * *
82958270 ATTCTGCTTATCTTTGATAGAAGCTCCTAGATCACAATCCTAATTGTCTAAACCTTCTTGTAAT-
433 ATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATC
*
82958334 AGCAAATTTTCCAATG
498 A-CAAATTTTCCAAAG
* * *
82958350 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGCTCTGT
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
* * *
82958415 GTGAAAACTAGGAGTTAATCAGGTTTACTAGTCATTCCTTTAAAAAAAATTAGTTAGCTTAATTT
66 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
* * *
82958480 CATTTAAAAATCGGTAAATAATATTTCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATAG
131 CATTTAAAAATCGGTAAATAATATTCCAGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
* *
82958545 TTTTAAATA-TTTTTGGTTAAAATAAATATTTTATTGAAAATTAAATTAAAATGGAGTTTCATTG
196 TTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
*
82958609 AGAGAAGTTACAATATTAACTAAATAGATATATAATATTCCGGAAAAT-AAAATATTTTTAGAAA
261 AGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
* * *
82958673 AATATAACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTAACACAAGTTCTTCCACGG
326 AATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGG
* *
82958738 GAGTATCGACCAATATTTTCT-TTTCCTTTTCAGA-CACCAAATTCTGCTTATCTTTGATAGAAG
391 GAGTATCGCCCAATATTTTCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAG
82958801 CTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAG
456 CTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAG
* * * *
82958858 AATGTTGTGTTTGTAAAGCCCTAAAAATTGGTCTACTAGTTTTGAGTAATTTTATCGGGTTCCGG
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
* *
82958923 GTGAAAGCTAGGAGTTAATCGGGATTACTAGTCATTTTTTTAAAAAAAATTAGTTAGCTTAATTT
66 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
* * * * *
82958988 CATTTAAAAATCAGTAAAAAATATTCCAGAAGATAAAAATATTTTTAGAGATATCAATTCTATGG
131 CATTTAAAAATCGGTAAATAATATTCCAGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
*
82959053 TTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAATTAAATTAAAATGGGGTTTCATTG
196 TTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
* *
82959118 AGAGAAGTTACAATATTAACTAAATTGGTATATAATATTCCTGAAAATAAAAATATTTTTAGAAA
261 AGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
* * * *
82959183 AATATCACGAATATCAGGAATACTAATACCCCCGTCCTTTTAGGCTCACACAAATTCTTCCAAGG
326 AATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGG
*
82959248 GAGTATCGCCCAATATTTTCCTCTTTCCTTTCTAGACCACCAAATTCTGCTTATCTTTGATAGAA
391 GAGTATCGCCCAATATTTT-CTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAA
* *
82959313 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCATAAATTTTCCATAG
455 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAG
* * *
82959371 TATGTTGTGTTTGTAACGCCCTGAAAATAGGTCGACTAGTTTTGAGTAAGTTTACCGGGTTCCGG
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
*
82959436 GTTAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAA-TAGTTAGCTTAATTT
66 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
* *
82959500 CATTTAAAAATTGGTAAATAATATTCCAGAAAATTAAAATATTTTTAGAGAAATCAATTTTATGG
131 CATTTAAAAATCGGTAAATAATATTCCAGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
82959565 TTTTAAATATTTTTTGGTTAAAA-AAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
196 TTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
* * *
82959629 AGAGAAGTTACAATATTAACTAAAGAGTTATATAATATTCCGGAAAGTAAAAATATTTTTAGAAA
261 AGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
* ** *
82959694 AGTATCACGAATATGTTGAATACTAATACCCCCATCCTTTTAGGTTGACACAAATTCTTCCACGG
326 AATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGG
* *
82959759 GAGTATCCCCCAATATTTTTCTCTTTCCTTTCCAGACTACCAAATTCTGCTTATCTTTGATAGAA
391 GAGTATCGCCCAATA-TTTTCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAA
* *
82959824 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCTAAAG
455 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAG
* * *
82959882 TATGTTGTGTTTGTAACTCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTGTATCGGGTTACGG
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
*
82959947 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTTATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
66 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
* * *
82960012 CATTTAAAAATTGGTAAATTATATTACAGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
131 CATTTAAAAATCGGTAAATAATATTCCAGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
*
82960077 TTTTAAATATTTTTTGGTT-AAATAAATAATTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
196 TTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
* * * *
82960141 AGAGAAGTTGCAATATTAACTAATTAGGTATATAAAATTACGGAAAATAAAAATATTTTTAGAAA
261 AGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
82960206 AATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGG
326 AATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGG
* * *
82960271 GAGTATCGCCCAATATTTTCTTCTTTCCTTTCCAGACCACCAAATTCTGCATATTTTTTATAGAA
391 GAGTATCGCCCAATATTTTC-TCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAA
* * *
82960336 GCCCCTCGATCACAATCTTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAG
455 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAG
*
82960394 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTAGTAGTTTTGAGTAAGTTTATCGGGTTCCGG
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
*
82960459 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCA--T-TTTAAAAAAAA-TAGTTAGCTTACTTT
66 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
* *
82960520 CGTTTAAAAATCGGTAAATAATATTCC-GAAAAATAAAAATATTTTTAGATAAATCAATTTTATG
131 CATTTAAAAATCGGTAAATAATATTCCAG-AAAATAAAAATATTTTTAGAGAAATCAATTTTATG
* * * * *
82960584 GATTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAGTAAAAATGAGGTTTAATT
195 GTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATT
*
82960649 GAGGGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAA
260 GAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAA
* *
82960714 AAATATCACAAATATCATGAATACTAATACCCCCATCCTTTTAGGCTAACACAAATTCTTCCACG
325 AAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACG
82960779 GGAGTATCGCCCAATATTTTC
390 GGAGTATCGCCCAATATTTTC
82960800 CTATTAGTTA
Statistics
Matches: 3213, Mismatches: 219, Indels: 109
0.91 0.06 0.03
Matches are distributed among these distances:
505 7 0.00
506 10 0.00
507 246 0.08
508 395 0.12
509 315 0.10
510 152 0.05
511 623 0.19
512 791 0.25
513 188 0.06
515 9 0.00
516 7 0.00
517 1 0.00
518 2 0.00
519 1 0.00
520 8 0.00
521 4 0.00
522 3 0.00
524 36 0.01
525 70 0.02
526 38 0.01
527 38 0.01
528 248 0.08
529 6 0.00
530 7 0.00
531 8 0.00
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.36
Consensus pattern (512 bp):
TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
CATTTAAAAATCGGTAAATAATATTCCAGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
TTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
AGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
AATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGG
GAGTATCGCCCAATATTTTCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAG
CTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAG
Found at i:82962443 original size:37 final size:37
Alignment explanation
Indices: 82962402--82962475 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
82962392 ACAGGGGCTG
82962402 TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
1 TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
82962439 TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
1 TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
82962476 CAATTTGATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.51, C:0.08, G:0.05, T:0.35
Consensus pattern (37 bp):
TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
Found at i:82962646 original size:50 final size:50
Alignment explanation
Indices: 82962585--82962692 Score: 162
Period size: 50 Copynumber: 2.2 Consensus size: 50
82962575 TACCTAAATG
* * * *
82962585 ATGTGCTCAACTCTGCTCAGTTCAACAGCCTTTCGGATTTATTTTGACTA
1 ATGTGCTCAACTCTACTCAGTTCAACAGCCTTTCAGATTTATTCTAACTA
* *
82962635 ATGTGCTCAACTCTACTTAGTTCAACAGCCTTTCAGATTTATTCTAACTG
1 ATGTGCTCAACTCTACTCAGTTCAACAGCCTTTCAGATTTATTCTAACTA
82962685 ATGTGCTC
1 ATGTGCTC
82962693 CGTTTTGATT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (50 bp):
ATGTGCTCAACTCTACTCAGTTCAACAGCCTTTCAGATTTATTCTAACTA
Found at i:82965332 original size:20 final size:19
Alignment explanation
Indices: 82965299--82965336 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
82965289 TGAGCAAACT
82965299 TTTTCTTGCTTCTTTATTTA
1 TTTTCTTGCTTC-TTATTTA
82965319 TTTTCTT-CTCTCTTATTT
1 TTTTCTTGCT-TCTTATTT
82965337 TTTACATGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.08, C:0.18, G:0.03, T:0.71
Consensus pattern (19 bp):
TTTTCTTGCTTCTTATTTA
Found at i:82971511 original size:19 final size:19
Alignment explanation
Indices: 82971487--82971584 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
82971477 AATCTTTAAG
82971487 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
82971506 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
82971525 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
82971542 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
82971561 GATATGTAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
82971582 GAT
1 GAT
82971585 CTTGTAATCT
Statistics
Matches: 74, Mismatches: 1, Indels: 6
0.91 0.01 0.07
Matches are distributed among these distances:
17 17 0.23
19 48 0.65
21 9 0.12
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:82971517 original size:36 final size:35
Alignment explanation
Indices: 82971477--82971562 Score: 115
Period size: 36 Copynumber: 2.4 Consensus size: 35
82971467 ATGGAAATAT
82971477 AATCTTTAAGGATATG-CAATCTTAGATATGATATGC
1 AATCTTT-A-GATATGACAATCTTAGATATGATATGC
82971513 AATC-TTAGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAGATATG--ACAATCTTAGATATGATATGC
82971549 AATC-TTAGATATGA
1 AATCTTTAGATATGA
82971563 TATGTAATCT
Statistics
Matches: 47, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
33 6 0.13
34 2 0.04
35 2 0.04
36 37 0.79
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.36
Consensus pattern (35 bp):
AATCTTTAGATATGACAATCTTAGATATGATATGC
Found at i:82971563 original size:36 final size:36
Alignment explanation
Indices: 82971493--82971564 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
82971483 TAAGGATATG
82971493 CAATCTTAGATATGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGATA
82971529 CAATCTTAGATATGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGATA
82971565 TGTAATCTTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (36 bp):
CAATCTTAGATATGATATGCAATCTTAGATATGATA
Found at i:82971593 original size:22 final size:21
Alignment explanation
Indices: 82971487--82971601 Score: 97
Period size: 19 Copynumber: 5.9 Consensus size: 21
82971477 AATCTTTAAG
*
82971487 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTGAAGATAT
*
82971506 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTGAAGATAT
*
82971525 GATA--CAATCTT--AGATAT
1 GATATGTAATCTTGAAGATAT
*
82971542 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTGAAGATAT
82971561 GATATGTAATCTTGAAGATAT
1 GATATGTAATCTTGAAGATAT
* *
82971582 GATCTTGTAATCTTGGAGAT
1 GAT-ATGTAATCTTGAAGAT
82971602 TTAATTTGTA
Statistics
Matches: 88, Mismatches: 3, Indels: 7
0.90 0.03 0.07
Matches are distributed among these distances:
17 17 0.19
19 48 0.55
21 9 0.10
22 14 0.16
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.37
Consensus pattern (21 bp):
GATATGTAATCTTGAAGATAT
Found at i:82977240 original size:1 final size:1
Alignment explanation
Indices: 82977234--82977286 Score: 52
Period size: 1 Copynumber: 53.0 Consensus size: 1
82977224 CTTCTATTTC
* ** * * *
82977234 AAAAAAAAAAGAAAAAAGGAAAAAAAATAAAAAGAAAAAAAAAAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
82977287 TGGAGAGGCC
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.89, C:0.00, G:0.09, T:0.02
Consensus pattern (1 bp):
A
Found at i:82977258 original size:16 final size:14
Alignment explanation
Indices: 82977237--82977286 Score: 66
Period size: 14 Copynumber: 3.4 Consensus size: 14
82977227 CTATTTCAAA
82977237 AAAAAAAGAAAAAAGG
1 AAAAAAA-AAAAAA-G
82977253 AAAAAAAATAAAAAG
1 AAAAAAAA-AAAAAG
82977268 -AAAAAAAAAAAAG
1 AAAAAAAAAAAAAG
82977281 AAAAAA
1 AAAAAA
82977287 TGGAGAGGCC
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
13 6 0.19
14 12 0.38
15 2 0.06
16 12 0.38
ACGTcount: A:0.88, C:0.00, G:0.10, T:0.02
Consensus pattern (14 bp):
AAAAAAAAAAAAAG
Found at i:82978375 original size:84 final size:84
Alignment explanation
Indices: 82978234--82978856 Score: 911
Period size: 84 Copynumber: 7.4 Consensus size: 84
82978224 AAAATTCAGT
82978234 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
82978299 TGGAGCAGATCGAAGACTC
66 TGGAGCAGATCGAAGACTC
* *
82978318 GCCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAACAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
82978383 TGGAGCAGATCGAAGACTC
66 TGGAGCAGATCGAAGACTC
*
82978402 GCCTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
82978467 TGGAGCAGATCGAAGACTC
66 TGGAGCAGATCGAAGACTC
* * * *
82978486 ACCTTAATCCCTTAAGCGGTAGGGTAACAGGTTAGATTTGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
82978551 TGGAGCAGATCGAAGACTC
66 TGGAGCAGATCGAAGACTC
* * * *
82978570 TCCTTAATACCCTAATCAGTAGGGTAATAGG-----TTTGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
* *
82978630 CGAAGCAGATCGACGACGACTC
66 TGGAGCAGATCGA--A-GACTC
* *
82978652 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGTAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
*
82978717 TGGAGCAGATCGAAGACCC
66 TGGAGCAGATCGAAGACTC
* ** *
82978736 GTCTTAATCCCCTAAATAGTAGGGTAACAGGTTAAATTTGCAAATCTTA--TCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
* *
82978799 CGGAGTAGATCAAAGAAGA-TGC
66 TGGAGCAGATC---GAAGACT-C
* *
82978821 TCCTTAACCCCCTAAGCAGTAGGGTAACAGGTTAAA
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA
82978857 GTATAACAGA
Statistics
Matches: 488, Mismatches: 39, Indels: 23
0.89 0.07 0.04
Matches are distributed among these distances:
79 40 0.08
81 1 0.00
82 54 0.11
84 317 0.65
85 38 0.08
87 38 0.08
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (84 bp):
GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
TGGAGCAGATCGAAGACTC
Found at i:82980974 original size:19 final size:19
Alignment explanation
Indices: 82980947--82981025 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
82980937 AATCTTTAAG
*
82980947 GATAAGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
82980966 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
82980985 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
82981002 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
82981023 GAT
1 GAT
82981026 CTTGTAATCT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
17 17 0.31
19 29 0.53
21 9 0.16
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.34
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:82980983 original size:14 final size:15
Alignment explanation
Indices: 82980966--82981003 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
82980956 TCTTAGATAT
82980966 GATATG-CAATCTTA
1 GATATGACAATCTTA
82980980 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
82980997 GATATGA
1 GATATGA
82981004 TATGCAATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.29
15 1 0.05
17 14 0.67
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:82998184 original size:507 final size:508
Alignment explanation
Indices: 82994932--83001392 Score: 10375
Period size: 513 Copynumber: 12.8 Consensus size: 508
82994922 TTATCCATGA
* *
82994932 TTGGAAAATTTGTGATTACAAGTAGGTTTGGACAATTAGGATTGTTATCGAGGAGCTTCTATCAA
1 TTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAA
* *
82994997 AGGTAAGCAG-ATTTGGTGGTCTGGAAAGGATAGAAGAAAATATTGGGCGATCCT-CCGTGGAAG
66 AGGTAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGGAAG
* *
82995060 AA-TTGTGTCAGCGT-AAAGGAT-GGGGTATTAGTATTCATGGTATTCGTGATATTTTTCTAAAA
131 AATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAA
*
82995122 ATATTTTTATTTTCTGGAATATTATATACCTA-TTAGTTAATATTGTAACTTCTCTCAATTAAAC
196 ATATTTTTATTTTCTGGAATATTATATACGTATTTAGTTAATATTGTAACTTCTCTCAATTAAAC
*
82995186 CCCATTTCAATTTATTTTTC-ATAAAAT-TTTATTTTAACCAAAAAATATTTAAAACCATAAAAT
261 CCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAAT
*
82995249 TGATTTCTCTAAAAATATTTTTATTTTCCAGAATATTATTTATC--TTTTTAAATGAAATTAA-C
326 TGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGTTTTTAAATGAAATTAAGC
82995311 T-ACTA-TTTTTTTAAATCACTAGT-AACCCGATTAACTCCTAGCTTTCACCCGGAACCCGAT-A
391 TAACTATTTTTTTTAAATCACTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACCCGATAA
* * * *
82995372 ACTTACTCAAAACTAGTAGGCCTATTTTTAAGGCGTTACAAAGACAACAAACT
456 ACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAACACAACATACT
82995425 TTGG-AAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAA
1 TTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATC-A
*
82995489 AAGGTAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACT-CC--GGAA
65 AAGGTAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGGAA
* * *
82995551 GAA-TTGTGTCAACCTAAACGGATGGGGGTATTAGTATTCATGATATTCGTGATAATTTTCT-AA
130 GAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAA
* *
82995614 AATATTTTTATTTTTTGGAATATTATATACGTATTTAGTTAATATTGTAACTTCTCTCAA-TGAA
195 AATATTTTTATTTTCTGGAATATTATATACGTATTTAGTTAATATTGTAACTTCTCTCAATTAAA
*
82995678 CCCCA-TTTAATTTATTTTTCACTAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAA
260 CCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAA
* * *
82995742 TTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTGTTTATCAGTTTTTATATGAAATTAAG
325 TTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGTTTTTAAATGAAATTAAG
* ** * *
82995807 CTAACTAATTTTTTTAAAGAAATGAGTAGAACCCGATTAAGTCCTAGC-TTCACCCGGAACCCGA
390 CTAACTATTTTTTTTAAATCACT-AGTA-AACCCGATTAACTCCTAGCTTTCACCCGGAACCCGA
* *
82995871 TAAATTTACTTAAAACTAGTAGACCTATTTTTAGGGCGTTACAAACACAACATACT
453 TAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAACACAACATACT
*
82995927 TTGGAAAATTTGCGATTACAAGTAGG-TTGGACAATTTGGA-TGTGATCGAGGAGCTTCTATCAA
1 TTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAA
* * * * *
82995990 AGATAAGCAGAATTTGATGGTCTGGAAAGGAAAGAGGAAAATATTAGGCAATACTCCCGTGGAAG
66 AGGTAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGGAAG
* * * *
82996055 AATTTGTGTTAGACTAAAAGGATGGGGGTATTAGTATTCTTGATATTCGTGATATTTTTCTATAA
131 AATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAA
* *
82996120 ATATTTTTATTTTC-CGAATATTATATACGTATTTAGTTAATATTGTAACTTCTCTTAATTAAAC
196 ATATTTTTATTTTCTGGAATATTATATACGTATTTAGTTAATATTGTAACTTCTCTCAATTAAAC
82996184 CCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCAT-AAAT
261 CCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAAT
*
82996248 T-ATTTCTCTAAAAATATTTTTATTTTCCAGAATATTATTTATCGGTTTTTAAATGAAATTAAGC
326 TGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGTTTTTAAATGAAATTAAGC
* *
82996312 TAACTATTTTTTTTAAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACCCGTAACCCGATAA
391 TAACTATTTTTTTTAAATCACTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACCCGATAA
* * *
82996377 ACTTACTCAAAACTAGTTGACCTATTTTTCGGGCGTTACAAAGACAACATACT
456 ACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAACACAACATACT
*
82996430 TTGGAAAATTTGTGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAA
1 TTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAA
82996495 AGGTAAGCAGAATTTGGT-GTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGGAAG
66 AGGTAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGGAAG
*
82996559 AATTTGTGTCAGCCTAAAAGGAT-GGGGTATTAGTATTCATGGTATTCGTGATA-TTTTCTAAAA
131 AATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAA
* *
82996622 ATATTTTTATTTT-TGGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATGAAAC
196 ATATTTTTATTTTCTGGAATATTATATACGTATTTAGTTAATATTGTAACTTCTCTCAATTAAAC
82996686 CCCATTTTAATTTATTTTTCAAT-AAA-ATTTATTTTAACCAAAAAATATTTAAAACCATAAAAT
261 CCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAAT
* *
82996749 TGATTTCTCT-AAAATATTTTT-TTTTCCGGAATATTATTTACCGATTTTTAAATGAAATTAAGC
326 TGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGTTTTTAAATGAAATTAAGC
* *
82996812 TAACTA-ATTTTTTAAATAACTAGTAAACCCGATTAACT-CTAGCTTTCACCCGGAACCCGATAA
391 TAACTATTTTTTTTAAATCACTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACCCGATAA
82996875 ACTTACTCAAAACTAGTAGACCTATTTTTA-GGCGTTACAAACACAACATACT
456 ACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAACACAACATACT
82996927 TTGGAAAATTTGCGATTACAAGTAGGTTTGGA-AATTAGGATTGTGATCGAGGAGCTTCTATC-A
1 TTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAA
* * *
82996990 AGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAG-AGGAAATATTGGGCGATACTCCCGAGGAAG
66 AGGTAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGGAAG
82997054 AATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTTCTAAA
131 AATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATA-TTTTTCTAAA
* * *
82997119 AATATTTTTATTTT-TTGAATATTATATACGTATTTAGTTAATATTTTAACTTCTCTCAATGAAA
195 AATATTTTTATTTTCTGGAATATTATATACGTATTTAGTTAATATTGTAACTTCTCTCAATTAAA
*
82997183 CCCCATTTTAATTTATTTTTCACTAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAA
260 CCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAA
*
82997248 TTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTA-CAG-TTTT--ATGAAATTAAG
325 TTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGTTTTTAAATGAAATTAAG
* * *
82997309 CTAACTATTTTTTTTAAA-GA-AAGTAGAACCCGATTAAGTCCTAGC-TTCACCCGGAACCCGAT
390 CTAACTATTTTTTTTAAATCACTAGTA-AACCCGATTAACTCCTAGCTTTCACCCGGAACCCGAT
* *
82997371 AAATTTACTTAAAACTAGTAGACCTATTTTTAGGGCGTTAC-AACACAACATACT
454 AAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAACACAACATACT
82997425 TTGG-AAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGA-CGAGGAGCTTCTATCAA
1 TTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAA
* * *
82997488 AGATAAGCAGAATTTGATGGTCTGGAAAGGAAAGAGGAAAATATT-GGC-ATACTCCCGTGGAAG
66 AGGTAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGGAAG
*
82997551 AATTTGTGTCAG-C-AAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTATAA
131 AATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAA
* *
82997614 ATATTTTTATTTTCCGGAATATTATATACGTATTTAGTTAATATTGTAACTTCTCTTAATTAAAC
196 ATATTTTTATTTTCTGGAATATTATATACGTATTTAGTTAATATTGTAACTTCTCTCAATTAAAC
82997679 CCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAAT
261 CCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAAT
* * *
82997744 TGATTTCGCTAAAAATATTTTTATTGTCCAGAATATTATTTATCGGTTTTTAAATGAAATTAAGC
326 TGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGTTTTTAAATGAAATTAAGC
* *
82997809 TAACTATTTTTTTTAAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACCCGTAACCCGATAA
391 TAACTATTTTTTTTAAATCACTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACCCGATAA
* * *
82997874 ACTTACTCAAAACTAGTTGACCTA-TTTTCGGGCGTTACAAAGACAACATACT
456 ACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAACACAACATACT
* * * *
82997926 TTGGAAAATTTGTGATTACTAGTAGGTTTGGACAAATAGGATTGTTATCGAGGAGCTTCTATCAA
1 TTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAA
*
82997991 AGGTAAGCAGAATTTGGTGGTCTGGAAAGGATAGAAGAAAATATTGGGCGATACTCCCGTGGAAG
66 AGGTAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGGAAG
* * * *
82998056 AATTTGTGTCTGCGTAAAAGGATGGGGGTATTAGTATTCATGGTATTCGTGATATTTTTATAAAA
131 AATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAA
*
82998121 ATATTTTTATTTTCTGGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATTAAAC
196 ATATTTTTATTTTCTGGAATATTATATACGTATTTAGTTAATATTGTAACTTCTCTCAATTAAAC
*
82998186 CCCATTTCAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAAT
261 CCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAAT
*
82998251 TGATTTCTCTAAAAATATTTTTATTTTCCAGAATATTATTTATCGGTTTTTAAATGAAATTAAGC
326 TGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGTTTTTAAATGAAATTAAGC
82998316 TAACTA-TTTTTTTAAATCACTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACCCGATAA
391 TAACTATTTTTTTTAAATCACTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACCCGATAA
* * *
82998380 ACTTACTCAAAACTAGTTGACCTATTTTTTGGGCGTTACAAAGACAACATACT
456 ACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAACACAACATACT
*
82998433 TTGGAAAATTTGTGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAA
1 TTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAA
** * *
82998498 AGGTAAGCATTATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCCCGAGGAAG
66 AGGTAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGGAAG
82998563 AATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAA
131 AATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAA
* *
82998628 ATATTTTTATTTTTTGGAATATTATATACGTATTTAGTTAATATTGTAACTTCTCTCAATGAAAC
196 ATATTTTTATTTTCTGGAATATTATATACGTATTTAGTTAATATTGTAACTTCTCTCAATTAAAC
* *
82998693 CCCATTTTAATTTATTTTTCACTAAAATATTTATTTTAGCCAAAAAATATTTAAAACCATAAAAT
261 CCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAAT
* * *
82998758 TGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTGTTTATCAGTTTTTATATGAAATTAAGC
326 TGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGTTTTTAAATGAAATTAAGC
* * * * * *
82998823 TAACTAATTTTTTTTAAAGAAATGAGTAGAAAACCCGATTAAGTCCTAGCGTTCACCCGGAGCCC
391 TAACT-ATTTTTTTT----AAATCACTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACCC
* *
82998888 GATAAATTTACTTAAAACTAGTAGACCTATTTTTAGGGCGTTACAAACACAACATACT
451 GATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAACACAACATACT
* *
82998946 TTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGAAGCTTCTACCAA
1 TTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAA
* * *
82999011 AGATAAGCAGAATCTGGTGGTCTGGAAAGGAAA-AAGGAAAATATTGGGCGATACTCCCGTGAAA
66 AGGTAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAA-GAAAATATTGGGCGATACTCCCGTGGAA
* * *
82999075 GAAATTGTGTCAGCCTAAAAGGATGAGGGTATTAGTATTCATGATATTTGTGATATTTTTCTAAA
130 GAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAA
82999140 AATATTTTTATTTTCTGGAATATTATATACGTATTTAGTTAATATTGTAACTTCTCTCAATTAAA
195 AATATTTTTATTTTCTGGAATATTATATACGTATTTAGTTAATATTGTAACTTCTCTCAATTAAA
* *
82999205 CCCCATTTCAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACAATAAAA
260 CCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAA
* * *
82999270 TTGATTTCTCTAAAAAGATTTTTATTTTCCGGAATATTGTTTATCGGTTTTTAAATGAAGTTAAG
325 TTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGTTTTTAAATGAAATTAAG
* * *
82999335 CTAACTAATTTTTTTAAATCACTAGTAAACCCGATTAACTCCTAGTTTTCACCCGTAACCCGATA
390 CTAACTATTTTTTTTAAATCACTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACCCGATA
* * *
82999400 AACTTACTCAAAACTAGTTGACCTATTTTTTGGGCGTTACAAAGACAACATACT
455 AACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAACACAACATACT
* *
82999454 TTGGAAAATTTGTGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATTAA
1 TTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAA
*
82999519 AGGTAAGCAGAATTTGGTGCTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGGAAG
66 AGGTAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGGAAG
* *
82999584 AATTTGTGTCAGCGTAAAAGGATGGGGGTATTAGTATTCATGGTATTCGTGATATTTTTCTAAAA
131 AATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAA
* *
82999649 ATATTTTTATTTTTTGGAATATTATATACGTATTTAGTTAATATTGTAACTTCTCTCAATGAAAC
196 ATATTTTTATTTTCTGGAATATTATATACGTATTTAGTTAATATTGTAACTTCTCTCAATTAAAC
82999714 CCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAAT
261 CCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAAT
* * * * **
82999779 TGATTTCTCTAAAAAAAATTTTATTTTCTGGAATATTATTTACCGACTTTTAAATGAAATTAAGC
326 TGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGTTTTTAAATGAAATTAAGC
* *
82999844 TAACTAATTTTTTTATAAATAACTAGTAAACCCGATTAACTCTTAGCTTTCACCCGGAACCCGAT
391 TAACT-ATTTTTTT-TAAATCACTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACCCGAT
* *
82999909 AAACTTACTCAAAACTAGTAGACCTATTTTTAGAGCGTTACAAACACAACATGCT
454 AAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAACACAACATACT
*
82999964 TTGGAAAATTTGCGATTACAAGTAGGTTTGGAAAATTAGGATTGTGATCGAGGAGCTTCTATCAA
1 TTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAA
* * * * *
83000029 AGATAAGCAGAATTTGGTGGTCTGGAAAGGAAATAGGAAAGTATTGGGCGATACTCCCGAGGAAG
66 AGGTAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGGAAG
83000094 AATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAA
131 AATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAA
* *
83000159 ATATTTTTATTTTTTGGAATATTATATACGTATTTAGTTAATATTGTAACTTCTCTCAATGAAAC
196 ATATTTTTATTTTCTGGAATATTATATACGTATTTAGTTAATATTGTAACTTCTCTCAATTAAAC
*
83000224 CCCATTTTAATTTATTTTTCACTAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAAT
261 CCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAAT
* * * *
83000289 TGATTTCTCTAAAAATATTTTTATTTTTCGGAATATTGTTTATCAGTTTTTATATGAAATTAAGC
326 TGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGTTTTTAAATGAAATTAAGC
** * * * *
83000354 TAACTAATTTTTTTTAAAGAAAAGAGTAGAAAACCCGATTAAGTCCTAGCTTTCACCCGGAGCCC
391 TAACT-ATTTTTTTT----AAATCACTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACCC
* *
83000419 GATAAATTTACTTAAAACTAGTAGACCTATTTTTAGGGCGTTACAAACACAACATACT
451 GATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAACACAACATACT
* * * *
83000477 TTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTTGGACTGTGACCCAGGAGCTTCTATCAA
1 TTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAA
* * * * *
83000542 AGATAAGCAGAATTTGATGGTCTGGAAAGGAAAGAGGAAAATATTAGGCAATACTCCCGTGGAAG
66 AGGTAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGGAAG
* * * * **
83000607 AATTTGTGTTAGACTAAAAAGATGGGGGTATTAGTATTCAAGATATTCGTGATATTTTTCTGTAA
131 AATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAA
* *
83000672 ATATTTTTATTTT-TCGGAATATTATATACGTATTTCGTTAATATTGTAACTTCTCTTAATTAAA
196 ATATTTTTATTTTCT-GGAATATTATATACGTATTTAGTTAATATTGTAACTTCTCTCAATTAAA
*
83000736 CCCCATTTTAATTTATTTTTCAATAAAATATTTGTTTTAACCAAAAAATATTTAAAACCATAAAA
260 CCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAA
*
83000801 TTGATTTCTCTAAAAATATTTTTATTTTCCAGAATATTATTTATCGGTTTTTAAATGAAATTAAG
325 TTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGTTTTTAAATGAAATTAAG
*
83000866 CTAACTATTTTTTTTAAATCACTAGTAAACCCGATTAACTCCTAGCTTTCGCCCGGAACCCGATA
390 CTAACTATTTTTTTTAAATCACTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACCCGATA
* * * *
83000931 AACGTACTCAAAACTAATTGACCTAGTTTTT-GGGCGTTACAAAGACAACATACT
455 AACTTACTCAAAACTAGTAGACCTA-TTTTTAGGGCGTTACAAACACAACATACT
*
83000985 TTGGAAAATTTGTGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAA
1 TTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAA
*
83001050 AGGTAAGCAGAATTTGGTGCTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGGAAG
66 AGGTAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGGAAG
* *
83001115 AATTTGTGTCAGCCTAAGAGGATGGGGGTATTAGTATTCATGGTATTCGTGATATTTTTCTAAAA
131 AATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAA
* * * *
83001180 ATATTTTTATTTTTTGGAATATTATATACCTATTTAGTTAATATTGTAACTTCTCTAAATGAAAC
196 ATATTTTTATTTTCTGGAATATTATATACGTATTTAGTTAATATTGTAACTTCTCTCAATTAAAC
* *
83001245 CCCATTTTAATTTATTTTACAAGAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAAT
261 CCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAAT
* * *
83001310 TGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGAAATTAAGA
326 TGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGTTTTTAAATGAAATTAAGC
*
83001375 TAACAAATTTTTTTTAAA
391 TAAC-TATTTTTTTTAAA
83001393 AGGAAATGAC
Statistics
Matches: 5529, Mismatches: 360, Indels: 142
0.92 0.06 0.02
Matches are distributed among these distances:
492 87 0.02
493 69 0.01
494 205 0.04
495 257 0.05
496 93 0.02
497 130 0.02
498 294 0.05
499 104 0.02
500 215 0.04
501 130 0.02
502 256 0.05
503 209 0.04
504 251 0.05
505 93 0.02
506 134 0.02
507 642 0.12
508 906 0.16
509 35 0.01
510 478 0.09
512 19 0.00
513 922 0.17
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (508 bp):
TTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAA
AGGTAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAAGAAAATATTGGGCGATACTCCCGTGGAAG
AATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAA
ATATTTTTATTTTCTGGAATATTATATACGTATTTAGTTAATATTGTAACTTCTCTCAATTAAAC
CCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAAT
TGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGTTTTTAAATGAAATTAAGC
TAACTATTTTTTTTAAATCACTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACCCGATAA
ACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAACACAACATACT
Found at i:83001278 original size:19 final size:20
Alignment explanation
Indices: 83001254--83001297 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
83001244 CCCCATTTTA
83001254 ATTTATTTT-A-CAAGAAAAT
1 ATTTATTTTAACCAA-AAAAT
83001273 ATTTATTTTAACCAAAAAAT
1 ATTTATTTTAACCAAAAAAT
83001293 ATTTA
1 ATTTA
83001298 AAACCATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.39
20 11 0.48
21 3 0.13
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (20 bp):
ATTTATTTTAACCAAAAAAT
Found at i:83004239 original size:13 final size:13
Alignment explanation
Indices: 83004221--83004259 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
83004211 ATATTATAAT
*
83004221 TATTTTGTGTTAA
1 TATTTTATGTTAA
*
83004234 TATTTTATGCTAA
1 TATTTTATGTTAA
83004247 TAATTTTATGTTA
1 T-ATTTTATGTTA
83004260 CAAAATGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.28, C:0.03, G:0.10, T:0.59
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:83005738 original size:40 final size:40
Alignment explanation
Indices: 83005690--83005855 Score: 257
Period size: 40 Copynumber: 4.2 Consensus size: 40
83005680 GGACTAAGAT
83005690 CCGAAGGCATTTGTG-GTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCG-AGTGACTATATCCGGGCTAAGTC
*
83005730 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
* *
83005770 CCGAAGGCAATTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
*
83005810 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTC
83005849 CCGAAGG
1 CCGAAGG
83005856 TACTTGGGTT
Statistics
Matches: 119, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
39 15 0.13
40 102 0.86
41 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
Found at i:83011894 original size:8 final size:8
Alignment explanation
Indices: 83011881--83011912 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
83011871 CTAGATCGGC
83011881 AAAAGCCG
1 AAAAGCCG
83011889 AAAAGCCG
1 AAAAGCCG
*
83011897 AAATGCCG
1 AAAAGCCG
83011905 AAAAGCCG
1 AAAAGCCG
83011913 GTATTTTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:83012184 original size:28 final size:28
Alignment explanation
Indices: 83012152--83012241 Score: 135
Period size: 28 Copynumber: 3.2 Consensus size: 28
83012142 AGTTAGATGA
*
83012152 TATACCCCTATGTATGCAAAATTACTAT
1 TATACCCCTATGTATGCAAAATTACCAT
*
83012180 TATACCCTTATGTATGCAAAATTACCAT
1 TATACCCCTATGTATGCAAAATTACCAT
* * *
83012208 TATACCCCTGTGTATGCAAAATGACCTT
1 TATACCCCTATGTATGCAAAATTACCAT
83012236 TATACC
1 TATACC
83012242 TCTAGGGTTA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 56 1.00
ACGTcount: A:0.33, C:0.23, G:0.09, T:0.34
Consensus pattern (28 bp):
TATACCCCTATGTATGCAAAATTACCAT
Found at i:83012382 original size:28 final size:26
Alignment explanation
Indices: 83012351--83012440 Score: 99
Period size: 28 Copynumber: 3.2 Consensus size: 26
83012341 AGGAAGCGTC
*
83012351 CTGGTGGCTATGCCATAAATTATCTGTT
1 CTGGTGGC-ATGCCACAAA-TATCTGTT
* *
83012379 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGG-CATGCCACAAATATCTGTT
83012406 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCA-TGCCAC-AAATATCTGT-T
83012435 CTGGTG
1 CTGGTG
83012441 ACTCTGTGAC
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
26 1 0.02
27 21 0.40
28 23 0.43
29 8 0.15
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.33
Consensus pattern (26 bp):
CTGGTGGCATGCCACAAATATCTGTT
Found at i:83012409 original size:27 final size:28
Alignment explanation
Indices: 83012351--83012440 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
83012341 AGGAAGCGTC
* *
83012351 CTGGTGGCTA-TGCCATAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* *
83012379 CTGGTGGCCCTGCCAC-ATATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
83012406 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
83012435 CTGGTG
1 CTGGTG
83012441 ACTCTGTGAC
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 24 0.45
28 22 0.42
29 7 0.13
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.33
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:83019280 original size:47 final size:47
Alignment explanation
Indices: 83019221--83019876 Score: 1188
Period size: 47 Copynumber: 13.9 Consensus size: 47
83019211 TAGTATGGCG
83019221 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
83019268 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
83019315 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
83019362 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
83019409 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
83019456 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
83019503 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
83019550 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
83019597 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGAT-AGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
83019643 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
83019692 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
83019739 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
83019786 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
83019833 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
83019877 TCCCGAAGGG
Statistics
Matches: 592, Mismatches: 14, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
46 33 0.06
47 513 0.87
48 12 0.02
49 34 0.06
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:83020050 original size:37 final size:37
Alignment explanation
Indices: 83019994--83020072 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
83019984 CCGAGCTCTA
* * *
83019994 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
83020031 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
83020068 AAGAC
1 AAGAC
83020073 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:83021648 original size:40 final size:40
Alignment explanation
Indices: 83021285--83021630 Score: 514
Period size: 40 Copynumber: 8.7 Consensus size: 40
83021275 GAGAATTGAG
83021285 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
83021325 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* *
83021365 AGTGATATATTCGGGCTAAGTCCTGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
83021405 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
83021445 AGTGATATATCCGAGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* *
83021485 AGTGATGTATCCGAGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * *
83021525 AGTGATGTATCCGGGCTAAGTTCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * * * *
83021565 AATAATATATCCGTGCTAA-ACCTCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCC-CGAGGAGCATTCGTGCT
* * *
83021605 GGTGTTATATCCGGGCTAGGTCCCGA
1 AGTGATATATCCGGGCTAAGTCCCGA
83021631 AGAGTAATCA
Statistics
Matches: 280, Mismatches: 24, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
39 1 0.00
40 277 0.99
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:83022175 original size:9 final size:9
Alignment explanation
Indices: 83022155--83022190 Score: 63
Period size: 9 Copynumber: 3.9 Consensus size: 9
83022145 GAAAGAATTT
83022155 TTGATGAATG
1 TTGAT-AATG
83022165 TTGATAATG
1 TTGATAATG
83022174 TTGATAATG
1 TTGATAATG
83022183 TTGATAAT
1 TTGATAAT
83022191 TTTTGATGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 21 0.81
10 5 0.19
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (9 bp):
TTGATAATG
Found at i:83022184 original size:18 final size:19
Alignment explanation
Indices: 83022155--83022207 Score: 72
Period size: 18 Copynumber: 2.8 Consensus size: 19
83022145 GAAAGAATTT
83022155 TTGATGAATGTTGATAATG
1 TTGATGAATGTTGATAATG
*
83022174 TTGAT-AATGTTGATAATTT
1 TTGATGAATGTTGATAA-TG
*
83022193 TTGATGAATGATGAT
1 TTGATGAATGTTGAT
83022208 GGTGTTCTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
18 11 0.37
19 11 0.37
20 8 0.27
ACGTcount: A:0.32, C:0.00, G:0.23, T:0.45
Consensus pattern (19 bp):
TTGATGAATGTTGATAATG
Found at i:83025320 original size:28 final size:28
Alignment explanation
Indices: 83025280--83025375 Score: 138
Period size: 28 Copynumber: 3.4 Consensus size: 28
83025270 AAGATGTACT
83025280 ATTATACCCCTATGTATGCAAAATTACC
1 ATTATACCCCTATGTATGCAAAATTACC
* *
83025308 ATTATGCCTCTATGTATGCAAAATTACC
1 ATTATACCCCTATGTATGCAAAATTACC
* * *
83025336 ATTATACCCCTGTGCATGCAAAATGACC
1 ATTATACCCCTATGTATGCAAAATTACC
*
83025364 TTTATACCCCTA
1 ATTATACCCCTA
83025376 GGGTTAATTT
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 59 1.00
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.32
Consensus pattern (28 bp):
ATTATACCCCTATGTATGCAAAATTACC
Found at i:83025512 original size:28 final size:27
Alignment explanation
Indices: 83025481--83025570 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 27
83025471 AGGAAGCGTC
* *
83025481 CTGGTGGCTATGCCATAAATTATCTGTT
1 CTGGTGGCCATGCCACAAA-TATCTGTT
* *
83025509 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCCATGCCACAAATATCTGTT
* *
83025536 CTGGTAG-CACTGCTACAAAATATCTGTAT
1 CTGGTGGCCA-TGCCAC-AAATATCTGT-T
83025565 CTGGTG
1 CTGGTG
83025571 ACTCTGTCAC
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
26 1 0.02
27 19 0.38
28 24 0.48
29 6 0.12
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCCATGCCACAAATATCTGTT
Found at i:83025539 original size:27 final size:28
Alignment explanation
Indices: 83025481--83025570 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
83025471 AGGAAGCGTC
* *
83025481 CTGGTGGCTA-TGCCATAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* *
83025509 CTGGTGGCCCTGCCAC-ATATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
* *
83025536 CTGGTAGCACTGCTACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
83025565 CTGGTG
1 CTGGTG
83025571 ACTCTGTCAC
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
27 22 0.44
28 22 0.44
29 6 0.12
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.34
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:83030804 original size:26 final size:26
Alignment explanation
Indices: 83030774--83030881 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
83030764 TGAAATTCCC
83030774 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
83030800 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
83030826 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
83030852 ATCATGGAACATTTACCTAACCTATT
1 ATCATGGAACATTTACCTAACCCATT
83030878 ATCA
1 ATCA
83030882 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:83037919 original size:25 final size:25
Alignment explanation
Indices: 83037861--83037964 Score: 176
Period size: 25 Copynumber: 4.2 Consensus size: 25
83037851 ATGAAATTCC
83037861 ATCATGGAACATTT-CCTAACCATT
1 ATCATGGAACATTTACCTAACCATT
83037885 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAA-CCATT
83037911 ATCAT-GAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAA-CCATT
83037936 ATCATGGAACATTTACCTAACCATT
1 ATCATGGAACATTTACCTAACCATT
83037961 ATCA
1 ATCA
83037965 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 0, Indels: 5
0.94 0.00 0.06
Matches are distributed among these distances:
24 14 0.18
25 39 0.51
26 24 0.31
ACGTcount: A:0.36, C:0.26, G:0.07, T:0.32
Consensus pattern (25 bp):
ATCATGGAACATTTACCTAACCATT
Found at i:83037943 original size:51 final size:49
Alignment explanation
Indices: 83037861--83037964 Score: 174
Period size: 51 Copynumber: 2.1 Consensus size: 49
83037851 ATGAAATTCC
83037861 ATCATGGAACATTTCCTAACCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTCCTAACCATTATCATGGAACATTTACCTAA-CCATT
83037911 ATCAT-GAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCATT
1 ATCATGGAACATTT-CCTAA-CCATTATCATGGAACATTTACCTAACCATT
83037961 ATCA
1 ATCA
83037965 ATTTGTATCA
Statistics
Matches: 52, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
49 8 0.15
50 19 0.37
51 25 0.48
ACGTcount: A:0.36, C:0.26, G:0.07, T:0.32
Consensus pattern (49 bp):
ATCATGGAACATTTCCTAACCATTATCATGGAACATTTACCTAACCATT
Found at i:83039646 original size:18 final size:19
Alignment explanation
Indices: 83039623--83039664 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
83039613 ACCCATTTTA
* *
83039623 ATTTATTTTTA-ATAAAAT
1 ATTTATTTTAACAAAAAAT
83039641 ATTTATTTTAACAAAAAAT
1 ATTTATTTTAACAAAAAAT
83039660 ATTTA
1 ATTTA
83039665 AAACCATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (19 bp):
ATTTATTTTAACAAAAAAT
Found at i:83039651 original size:17 final size:18
Alignment explanation
Indices: 83039623--83039656 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
83039613 ACCCATTTTA
*
83039623 ATTTATTTTTAATAAAAT
1 ATTTATTTTTAACAAAAT
83039641 ATTTA-TTTTAACAAAA
1 ATTTATTTTTAACAAAA
83039657 AATATTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (18 bp):
ATTTATTTTTAACAAAAT
Found at i:83040158 original size:17 final size:19
Alignment explanation
Indices: 83040122--83040162 Score: 68
Period size: 17 Copynumber: 2.3 Consensus size: 19
83040112 CCACATTTTA
83040122 ATTTATTTTTCAATAAAAT
1 ATTTATTTTTCAATAAAAT
83040141 ATTTATTTTT-AA-AAAAT
1 ATTTATTTTTCAATAAAAT
83040158 ATTTA
1 ATTTA
83040163 AAACCATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 10 0.45
18 2 0.09
19 10 0.45
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (19 bp):
ATTTATTTTTCAATAAAAT
Found at i:83040868 original size:508 final size:509
Alignment explanation
Indices: 83039342--83041630 Score: 3684
Period size: 508 Copynumber: 4.5 Consensus size: 509
83039332 TTTACATTTC
83039342 GGGCGTTACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTA-GAT
1 GGGCGTTA-AAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGAT
83039406 TGTGATCGAGGAGCTTCTAT-AAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAAT
65 TGTGATCGAGGAGCTTCTATAAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAAT
83039470 A-T---CGATA-T---G-GGAAGAA-TTGTGGTCAGCCTAAAAGGATGGGGTATTAGTATTCATG
130 ATTGGGCGATACTCCCGTGGAAGAATTTGT-GTCAGCCTAAAAGGATGGGGTATTAGTATTCATG
83039525 ATATTCGTGATATTTTTCCTAAAAATA-TTTTATTTTCCGGAATATTATATAACCTATTTAGTTA
194 ATATTCGTGATATTTTT-CTAAAAATATTTTTATTTTCCGGAATATTATAT-ACCTATTTAGTTA
*
83039589 ATATTGTAAACTTCTCTCAATTAAACCCATTTTAATTTATTTTT-AATAAAATATTTATTTTAAC
257 ATATTGT-AACTTCTCTCAATGAAACCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAAC
83039653 AAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATA-TTTTATTTTCC-GAATATTATTT
321 AAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTT
* * *
83039716 ACCGATTTT-AAATGAAATTAAGCTAACTAATTTTTTTTAAAAAGAAATGACTAGTAAACCCGAT
386 ATCGATTTTAAAATAAAATTAAGCTAACTAAATTTTTTT-AAAAGAAATGACTAGTAAACCCGAT
* * *
83039780 TAACACCTAGCTTTCACCCGAAACTCGATAAACTTACTCAAAACTAGTAGACCTATTTTTA
450 TAACTCCTAGCTTTCACCCG-GACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTA
* * * *
83039841 GGGCGTTACAACATAACATACTTTGAAAAATTTGCGATTACAAGTAGGTTTGGACAATTAAGATT
1 GGGCGTTAAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATT
* * *
83039906 ATGATCGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGAT-GTCTGGAAAGG-AAG-TGAAAAT
66 GTGATCGAGGAGCTTCTATAAAAGATAAGCAGAATTTGG-TGGTCTGGAAAGGAAAGAGGAAAAT
* *
83039968 ATTGGGCGATACTCCAGTGGAGGAA-TT-TGT--G--TAAAAGGATGGGGTATTAGTATTCATGA
130 ATTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGTATTAGTATTCATGA
*
83040027 TATTCGTGATA-TTTTCTAAAAATATTTTTATTTTCTGGAATATTATATACCTATTTAGTTAATA
195 TATTCGTGATATTTTTCTAAAAATATTTTTATTTTCCGGAATATTATATACCTATTTAGTTAATA
* * *
83040091 ATGTAACTTCTCTAAATGAAACCACATTTTAATTTATTTTTCAATAAAATATTTATTTT--TAAA
260 TTGTAACTTCTCTCAATGAAACC-CATTTTAATTTATTTTTCAATAAAATATTTATTTTAACAAA
83040154 AAATATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATC
324 AAATATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATC
* * *
83040219 GA-TTGAAAA-AAAATTAAGCTAACTAATTTTTTTTAAAAGAAATGACTAGTAAACTCGATTAAC
389 GATTTTAAAATAAAATTAAGCTAACTAAATTTTTTTAAAAGAAATGACTAGTAAACCCGATTAAC
*
83040282 TCGTAGCTTTCACCCGGACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTA
454 TCCTAGCTTTCACCCGGACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTA
* * *
83040338 GGGCATTACAAACACAACATACTTTGGAAAATTTTCGATTACAAGTAGGTTTAGACAATTAGGAT
1 GGGCGTTA-AAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGAT
* * *
83040403 TGTGATCAAGGAGCTTCTATAAAAAATAAACAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAAT
65 TGTGATCGAGGAGCTTCTATAAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAAT
* *
83040468 ATTGGGCTATACTCCTGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATG
130 ATTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGAT-GGGGTATTAGTATTCATG
83040533 ATATTCGTGATATTTTTCTAAAAATATTTTTATTTTCCGGAATATTATATACCTATTTAGTTAAT
194 ATATTCGTGATATTTTTCTAAAAATATTTTTATTTTCCGGAATATTATATACCTATTTAGTTAAT
83040598 ATTGTAACTTCTCTCAATGAAATCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCA
259 ATTGTAACTTCTCTCAATGAAA-CCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAA-CA
*
83040663 AAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTTCGGAATATTATTTA
322 AAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTA
83040728 TCGATTTTAAAATAAAATTAAGCTAACTAAATTTTTTT-AAAGAAATGACTAGTAAACCCGATTA
387 TCGATTTTAAAATAAAATTAAGCTAACTAAATTTTTTTAAAAGAAATGACTAGTAAACCCGATTA
* *
83040792 ACTCCTAGCTTTCACCCGGAACCTGATAAACTTACTCAAAACTAGTATACCTATTTTTA
452 ACTCCTAGCTTTCACCCGG-ACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTA
*
83040851 -GGCGTT-AAA-AC-ACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGATAATTAGGATT
1 GGGCGTTAAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATT
* * * *
83040912 GTGATCGAGGAGCTTCTATGAAAGATAAGCAGAATTTGGTGGGCTGGAAAGGAACGGGGAAAATA
66 GTGATCGAGGAGCTTCTATAAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATA
* *
83040977 TTAGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGTATTAGTATTCATGCT
131 TTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGTATTAGTATTCATGAT
83041042 ATTCGTGATATTTTTCTAAAAATATTTTTATTTTCCGGAATATTATA-ACCTATTTAGTTAATAT
196 ATTCGTGATATTTTTCTAAAAATATTTTTATTTTCCGGAATATTATATACCTATTTAGTTAATAT
83041106 TGTAACTTCTCTCAATGAAACCCCATTTTAATTTATTTTTCAATAAAATATTT-TTTTAACAAAA
261 TGTAACTTCTCTCAATGAAA-CCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACAAAA
*
83041170 AATATTTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCAGAATATTATTTATC
325 AATA-TTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATC
*
83041235 GATTTTAAAATAATATTAAGCTAACTAAATTTTTTT-AAAGAAATGACTAGTAAACCCGATTAAC
389 GATTTTAAAATAAAATTAAGCTAACTAAATTTTTTTAAAAGAAATGACTAGTAAACCCGATTAAC
*
83041299 TCCTAGCTTTCACCCGGACCCGATAAACTTACTCAAAACTAGTAGACCCATTTTTA
454 TCCTAGCTTTCACCCGGACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTA
83041355 GGGCGTTACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGAT
1 GGGCGTTA-AAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGAT
* *
83041420 TGTGATCGAGGAGCTTCTATGAAAGAAAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAAT
65 TGTGATCGAGGAGCTTCTATAAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAAT
83041485 ATTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATG
130 ATTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGAT-GGGGTATTAGTATTCATG
* * *
83041550 ATATTCGTGGTATTTTTTTTAAAAATATTTTTATTTTCCGAAATATTATATACCTATTTAGTTAA
194 ATATTCGTGATA-TTTTTCTAAAAATATTTTTATTTTCCGGAATATTATATACCTATTTAGTTAA
83041615 TATTGTAACTTCTCTC
258 TATTGTAACTTCTCTC
83041631 TATAGACACT
Statistics
Matches: 1666, Mismatches: 78, Indels: 79
0.91 0.04 0.04
Matches are distributed among these distances:
497 46 0.03
498 252 0.15
499 119 0.07
500 119 0.07
501 42 0.03
502 8 0.00
503 2 0.00
504 46 0.03
505 152 0.09
506 80 0.05
507 107 0.06
508 255 0.15
509 158 0.09
510 31 0.02
511 104 0.06
512 84 0.05
513 61 0.04
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (509 bp):
GGGCGTTAAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATT
GTGATCGAGGAGCTTCTATAAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATA
TTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGTATTAGTATTCATGAT
ATTCGTGATATTTTTCTAAAAATATTTTTATTTTCCGGAATATTATATACCTATTTAGTTAATAT
TGTAACTTCTCTCAATGAAACCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACAAAAA
ATATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGA
TTTTAAAATAAAATTAAGCTAACTAAATTTTTTTAAAAGAAATGACTAGTAAACCCGATTAACTC
CTAGCTTTCACCCGGACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTA
Found at i:83041853 original size:14 final size:15
Alignment explanation
Indices: 83041836--83041890 Score: 58
Period size: 18 Copynumber: 3.4 Consensus size: 15
83041826 CTTAGATATA
83041836 ATATG-CAATCTTAG
1 ATATGACAATCTTAG
83041850 ATATGATACAATCTTAG
1 ATATG--ACAATCTTAG
83041867 ATATGATTACAATCTTAG
1 ATATG---ACAATCTTAG
83041885 ATATGA
1 ATATGA
83041891 TATGCAATCT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
14 5 0.14
15 1 0.03
17 14 0.39
18 16 0.44
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (15 bp):
ATATGACAATCTTAG
Found at i:83041911 original size:17 final size:19
Alignment explanation
Indices: 83041814--83041904 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
83041804 ATAATCTTCA
83041814 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
83041833 ATAATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
83041852 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
83041869 ATGAT-TACAATCTTAGAT
1 ATGATATGCAATCTTAGAT
83041887 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
83041905 AGATATGATT
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 34 0.52
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:83041930 original size:22 final size:22
Alignment explanation
Indices: 83041883--83041927 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
83041873 TTACAATCTT
*
83041883 AGATATGATATGCAATCTTAGA
1 AGATATGATATGCAATATTAGA
* *
83041905 AGATATGATTTTGTAATATTAGA
1 AGATATGA-TATGCAATATTAGA
83041928 GATTTAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.40, C:0.04, G:0.18, T:0.38
Consensus pattern (22 bp):
AGATATGATATGCAATATTAGA
Found at i:83042218 original size:17 final size:17
Alignment explanation
Indices: 83042194--83042228 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
83042184 TGTTTCCCTG
*
83042194 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
83042212 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
83042229 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:83050421 original size:89 final size:87
Alignment explanation
Indices: 83050292--83050453 Score: 200
Period size: 89 Copynumber: 1.8 Consensus size: 87
83050282 ATTCGACGGA
* * *
83050292 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATG
1 GAGCAGATCGAAGACATAGAAGATCTAACCTTCCGATGTTTACAC-T-GAAGTAGATCCAAGATG
*
83050357 ATTTGGCATCCTTGCATTGACAAG
64 ATCTGGCATCCTTGCATTGACAAG
* ** * * *
83050381 GAGCAGATCGAAGACATAGAAGATTTGGCTTTCACG-TGTTTACGCTGAAGTAGATCTAAGATGA
1 GAGCAGATCGAAGACATAGAAGATCTAACCTTC-CGATGTTTACACTGAAGTAGATCCAAGATGA
83050445 TCTGGCATC
65 TCTGGCATC
83050454 TTTGTACTGT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
87 25 0.40
88 1 0.02
89 35 0.56
90 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (87 bp):
GAGCAGATCGAAGACATAGAAGATCTAACCTTCCGATGTTTACACTGAAGTAGATCCAAGATGAT
CTGGCATCCTTGCATTGACAAG
Found at i:83050616 original size:78 final size:78
Alignment explanation
Indices: 83050486--83050780 Score: 475
Period size: 78 Copynumber: 3.8 Consensus size: 78
83050476 CGAAGAAACA
** * * *
83050486 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCATATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
83050551 GCAGATCCAAGAT
66 GCAGATCCAAGAT
*
83050564 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
83050629 GCAGGTCCAAGAT
66 GCAGATCCAAGAT
* * *
83050642 GATTTGGCATCTCTGTATTAGATGGGGAGCAGATCAAAGACATAACAGAT-TGAACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTG-ACCTTCATTGA
83050706 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
*
83050720 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACGTAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
83050781 GTGTTTACAT
Statistics
Matches: 199, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
77 2 0.01
78 195 0.98
79 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:83050673 original size:41 final size:41
Alignment explanation
Indices: 83050550--83050986 Score: 130
Period size: 45 Copynumber: 10.3 Consensus size: 41
83050540 CCTTCATTGA
*
83050550 AGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATCCAAGATGATTTGGCATCTCTGTATTAGATGGGG
* * ** * * *
83050591 AGCAGATCGAAGAT-A--TAGCAGATCTG-ACCTT-CAT-TGA
1 AGCAGATCCAAGATGATTTGGCATCTCTGTA--TTAGATGGGG
*
83050628 AGCAGGTCCAAGATGATTTGGCATCTCTGTATTAGATGGGG
1 AGCAGATCCAAGATGATTTGGCATCTCTGTATTAGATGGGG
** ** ** * * * *
83050669 AGCAGAT-CAA-A-GACATAACAGAT-TGAACCTT-CAT-TGA
1 AGCAGATCCAAGATGATTTGGCATCTCTGTA--TTAGATGGGG
*
83050706 AGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATCCAAGATGATTTGGCATCTCTGTATTAGATGGGG
* * * * * * * *
83050747 AGCAGATCGAAGACGTAGCAGATCTGACCT-TCATGTGTTTACAT-CGA
1 AGCAGATCCAAGA--T----GATTTGGCATCTC-TGT-ATTAGATGGGG
*
83050794 AGCAGATCCAAGATGATAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATCC-A-A-GAT-GATTTGGCATCTCTGTATTAGATGGGG
* * *
83050839 AGCAAAT-CAGAGATAACAGATTTGGCATCTCTGCATTAGACGGGG
1 AGCAGATCCA-AGAT----GATTTGGCATCTCTGTATTAGATGGGG
** * * *
83050884 AGCAGATTGAAGAAGCAGATTTGGCGTCTCTGTATTAGACGGGG
1 AGCAGATCCAAG-A--TGATTTGGCATCTCTGTATTAGATGGGG
* * * * *
83050928 AGCAGATCGAAGATAATAGATTTGGCGTCTTTGTTTTAGACGGGG
1 AGCAGATCCAAG---AT-GATTTGGCATCTCTGTATTAGATGGGG
*
83050973 AGCAGATCAAAGAT
1 AGCAGATCCAAGAT
83050987 AGCAGGTATC
Statistics
Matches: 289, Mismatches: 68, Indels: 77
0.67 0.16 0.18
Matches are distributed among these distances:
37 25 0.09
38 21 0.07
39 10 0.03
40 21 0.07
41 37 0.13
42 5 0.02
43 4 0.01
44 41 0.14
45 89 0.31
46 8 0.03
47 19 0.07
48 6 0.02
49 1 0.00
50 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (41 bp):
AGCAGATCCAAGATGATTTGGCATCTCTGTATTAGATGGGG
Found at i:83050877 original size:45 final size:46
Alignment explanation
Indices: 83050720--83050987 Score: 250
Period size: 45 Copynumber: 5.9 Consensus size: 46
83050710 GATCCAAGAT
*
83050720 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATC-GAAGACGTAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAGAAGA--TAACA
* * * * * * * * *
83050767 GATCTGACCT-TCATGTGTTTACATC--GAAGCAGATC-CAAGATGATA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCAGAAGATAACA
*
83050812 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAG-AGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAGAAGATAACA
* * *
83050857 GATTTGGCATCTCTGCATTAGACGGGGAGCAGAT-TGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAGAAGATAACA
* *
83050901 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATC-GAAGATAATA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAGAAGATAACA
* * *
83050946 GATTTGGCGTCTTTGTTTTAGACGGGGAGCAGATCA-AAGATA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAGAAGATA
83050988 GCAGGTATCG
Statistics
Matches: 180, Mismatches: 30, Indels: 24
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 45 0.25
45 102 0.57
46 4 0.02
47 23 0.13
48 4 0.02
49 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (46 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAGAAGATAACA
Found at i:83050931 original size:89 final size:89
Alignment explanation
Indices: 83050811--83050979 Score: 259
Period size: 89 Copynumber: 1.9 Consensus size: 89
83050801 CCAAGATGAT
83050811 AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATC-AGAGATAACAGATTTGGCATCTCTGCAT
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGA-AGATAACAGATTTGGCATCTCTGCAT
83050875 TAGACGGGGAGCAGATTGAAGAAGC
65 TAGACGGGGAGCAGATTGAAGAAGC
* * * * * **
83050900 AGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAATAGATTTGGCGTCTTTGTTTT
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGCATT
83050965 AGACGGGGAGCAGAT
66 AGACGGGGAGCAGAT
83050980 CAAAGATAGC
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
89 71 0.99
90 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (89 bp):
AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGCATT
AGACGGGGAGCAGATTGAAGAAGC
Found at i:83050969 original size:134 final size:135
Alignment explanation
Indices: 83050720--83050987 Score: 328
Period size: 134 Copynumber: 2.0 Consensus size: 135
83050710 GATCCAAGAT
* *
83050720 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACGTAGCAGATCTGACCTTCATGTGT
1 GATTTGGCATCTCTGCATTAGACGGGGAGCAGATCGAAGAC--AGCAGATCTGACCTTCATGTGA
* *
83050785 TTACATCGAAGCAGATCCAAGATGATAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAGA
64 TTACATCGAAGCAGATCCAAGATAATAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAAA
83050850 GATAACA
129 GATAACA
* * * *
83050857 GATTTGGCATCTCTGCATTAGACGGGGAGCAGATTGAAGA-AGCAGATTTGGCGTCTC-TGT-AT
1 GATTTGGCATCTCTGCATTAGACGGGGAGCAGATCGAAGACAGCAGATCTGACCT-TCATGTGAT
* * * * * * *
83050919 TAGA-CGGGGAGCAGATCGAAGATAATAGATTTGGCGTCTTTGTTTTAGACGGGGAGCAGATCAA
65 TACATC--GAAGCAGATCCAAGATAATAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAA
83050983 AGATA
128 AGATA
83050988 GCAGGTATCG
Statistics
Matches: 113, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
132 1 0.01
133 4 0.04
134 68 0.60
135 2 0.02
137 38 0.34
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (135 bp):
GATTTGGCATCTCTGCATTAGACGGGGAGCAGATCGAAGACAGCAGATCTGACCTTCATGTGATT
ACATCGAAGCAGATCCAAGATAATAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAAAGA
TAACA
Found at i:83051360 original size:14 final size:15
Alignment explanation
Indices: 83051341--83051396 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
83051331 AATCTTCAAT
83051341 GATATG-CAATCTTA
1 GATATGACAATCTTA
83051355 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
83051372 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
83051390 GATATGA
1 GATATGA
83051397 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:83051385 original size:35 final size:37
Alignment explanation
Indices: 83051339--83051417 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
83051329 ATAATCTTCA
83051339 ATGATATGCAATCTTAGATATGATA-CAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
83051375 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATCTTAGATATGATA-GCAATCTTAGAT
83051411 A-GATATG
1 ATGATATG
83051418 ATTTTCTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
Found at i:83051417 original size:17 final size:19
Alignment explanation
Indices: 83051339--83051410 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
83051329 ATAATCTTCA
83051339 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
83051358 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
83051375 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
83051393 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
83051411 AGATATGATT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:83051436 original size:22 final size:22
Alignment explanation
Indices: 83051339--83051433 Score: 79
Period size: 17 Copynumber: 4.8 Consensus size: 22
83051329 ATAATCTTCA
83051339 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
83051358 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
83051375 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
83051393 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
83051415 ATGATTTTCTAATCTTAGA
1 ATGATATGC-AATCTTAGA
83051434 GATTTAATTT
Statistics
Matches: 67, Mismatches: 2, Indels: 10
0.85 0.03 0.13
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 15 0.22
22 11 0.16
23 9 0.13
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:83051722 original size:17 final size:17
Alignment explanation
Indices: 83051700--83051733 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
83051690 TGTTTCCCTG
83051700 ATTTTTT-ATATATTTTA
1 ATTTTTTAATA-ATTTTA
83051717 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
83051734 GTATCATATC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.81
18 3 0.19
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:83053347 original size:513 final size:513
Alignment explanation
Indices: 83052380--83053450 Score: 1899
Period size: 513 Copynumber: 2.1 Consensus size: 513
83052370 GGTTTCGACA
* *
83052380 CTCTCAATGAAACCCCATTGTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTT
1 CTCTCAATGGAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTT
* * *
83052445 AAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGATTTTAA
66 AAAACCATAAAATTCATTTCTCTAAAAATATTTTTATTTTCCAGAAAATTATTTATCGATTTTAA
* *
83052510 AATAAAATTAAGCTAACTAATTTTTTTTAAAGAAATGACTAGTAAACTCGATTAACTCCTAGCTT
131 AATAAAATTAAGCTAACTAATTTTTTTTAAAGAAATAACTAGTAAACCCGATTAACTCCTAGCTT
83052575 TCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGACGTTACAAACACAA
196 TCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGACGTTACAAACACAA
* * *
83052640 CATACTTCAGAAACTTTGTGATTACAAGTAGGTTTAGACAATTAGGATTGTGATCGAAGAGCTTT
261 CATACTTCAGAAAATTTGCGATTACAAGTAGGTTTAGACAATTAGGATTGTGATCGAAGAGCTTC
* *
83052705 TATGAAAGATAAGTAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCCTG
326 TATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCCTG
* *
83052770 TGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTT
391 TGGAAAAATTTGTGTCAGCCTAAAAGGATAGGGGTATTAGTATTCATGATATTCGTGATATTTTT
*
83052835 CTAAAAATATTTTTATTTTCCCGAATATTATATACCTATTTAGTTAATATTGTAATTT
456 CTAAAAATATTTTTATTTTCCCGAATATTATATACCTATTTAGTTAATATTGTAACTT
83052893 CTCTCAATGGAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTT
1 CTCTCAATGGAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTT
* *
83052958 AAAACCATAAAATTCATTTCTCTAAAAATATTTTTATTTTTCAGAAAATTATTTATCGATTTTTA
66 AAAACCATAAAATTCATTTCTCTAAAAATATTTTTATTTTCCAGAAAATTATTTATCGATTTTAA
* *
83053023 AATGAAATTAAGCTAACTAATTTTTTTTAAATAAATAACTAGTAAACCCGATTAACTCCTAGCTT
131 AATAAAATTAAGCTAACTAATTTTTTTTAAAGAAATAACTAGTAAACCCGATTAACTCCTAGCTT
* *
83053088 TCACCCGGAACTCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAACACAA
196 TCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGACGTTACAAACACAA
** * *
83053153 CATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTC
261 CATACTTCAGAAAATTTGCGATTACAAGTAGGTTTAGACAATTAGGATTGTGATCGAAGAGCTTC
*
83053218 TATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGGGGAAAATATTGGGCGATACTCCTG
326 TATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCCTG
83053283 TGGAAAAATTTGTGTCAGCCTAAAAGGATAGGGGTATTAGTATTCATGATATTCGTGATATTTTT
391 TGGAAAAATTTGTGTCAGCCTAAAAGGATAGGGGTATTAGTATTCATGATATTCGTGATATTTTT
83053348 CTAAAAATATTTTTATTTTCCCGAATATTATATACCTATTTAGTTAATATTGTAACTT
456 CTAAAAATATTTTTATTTTCCCGAATATTATATACCTATTTAGTTAATATTGTAACTT
*
83053406 CTCTCAATGGAACCCCATTTTAATTTTTTTTTCAATAAAATATTT
1 CTCTCAATGGAACCCCATTTTAATTTATTTTTCAATAAAATATTT
83053451 GTCGAAACCT
Statistics
Matches: 531, Mismatches: 27, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
513 531 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.37
Consensus pattern (513 bp):
CTCTCAATGGAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAATATTT
AAAACCATAAAATTCATTTCTCTAAAAATATTTTTATTTTCCAGAAAATTATTTATCGATTTTAA
AATAAAATTAAGCTAACTAATTTTTTTTAAAGAAATAACTAGTAAACCCGATTAACTCCTAGCTT
TCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGACGTTACAAACACAA
CATACTTCAGAAAATTTGCGATTACAAGTAGGTTTAGACAATTAGGATTGTGATCGAAGAGCTTC
TATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCCTG
TGGAAAAATTTGTGTCAGCCTAAAAGGATAGGGGTATTAGTATTCATGATATTCGTGATATTTTT
CTAAAAATATTTTTATTTTCCCGAATATTATATACCTATTTAGTTAATATTGTAACTT
Found at i:83054402 original size:15 final size:16
Alignment explanation
Indices: 83054384--83054416 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
83054374 ATAAGGAAAT
*
83054384 TATAAA-CATATAAAA
1 TATAAATCAAATAAAA
83054399 TATAAATCAAATAAAA
1 TATAAATCAAATAAAA
83054415 TA
1 TA
83054417 AAAAAGATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (16 bp):
TATAAATCAAATAAAA
Found at i:83054412 original size:16 final size:15
Alignment explanation
Indices: 83054340--83054416 Score: 50
Period size: 15 Copynumber: 5.0 Consensus size: 15
83054330 TTTAACCTAC
83054340 TAAACAATATCAAAATA
1 TAAACAA-AT-AAAATA
*
83054357 -AAACAAA-ACAAAAA
1 TAAACAAATA-AAATA
* ** *
83054371 TAAATAAGGAAATTA
1 TAAACAAATAAAATA
*
83054386 TAAACATATAAAATA
1 TAAACAAATAAAATA
83054401 TAAATCAAATAAAATA
1 TAAA-CAAATAAAATA
83054417 AAAAAGATAT
Statistics
Matches: 45, Mismatches: 11, Indels: 9
0.69 0.17 0.14
Matches are distributed among these distances:
13 1 0.02
14 4 0.09
15 23 0.51
16 17 0.38
ACGTcount: A:0.69, C:0.08, G:0.03, T:0.21
Consensus pattern (15 bp):
TAAACAAATAAAATA
Found at i:83054676 original size:19 final size:19
Alignment explanation
Indices: 83054660--83054733 Score: 64
Period size: 19 Copynumber: 3.8 Consensus size: 19
83054650 TAATATATGG
83054660 TAAAATATATAAAATATAA
1 TAAAATATATAAAATATAA
* *
83054679 TAAAATTTAT-AAACA-AA
1 TAAAATATATAAAATATAA
*
83054696 TAATAATATA-AACAATATGA
1 TAA-AATATATAA-AATATAA
83054716 TAAGTAATATATAAAATA
1 TAA--AATATATAAAATA
83054734 ATATATATAT
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
17 5 0.11
18 10 0.23
19 12 0.27
20 4 0.09
21 11 0.25
22 2 0.05
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (19 bp):
TAAAATATATAAAATATAA
Found at i:83054681 original size:10 final size:9
Alignment explanation
Indices: 83054660--83054738 Score: 56
Period size: 9 Copynumber: 8.2 Consensus size: 9
83054650 TAATATATGG
83054660 TAAAATATA
1 TAAAATATA
83054669 TAAAATATAA
1 TAAAATAT-A
*
83054679 TAAAATTTA
1 TAAAATATA
83054688 TAAACA-A-A
1 TAAA-ATATA
83054696 TAATAATATA
1 TAA-AATATA
83054706 -AACAATATGA
1 TAA-AATAT-A
83054716 TAAGTAATATA
1 TAA--AATATA
83054727 TAAAATAATA
1 TAAAAT-ATA
83054737 TA
1 TA
83054739 TATATTAAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 17
0.73 0.05 0.22
Matches are distributed among these distances:
8 5 0.09
9 25 0.44
10 16 0.28
11 6 0.11
12 5 0.09
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.32
Consensus pattern (9 bp):
TAAAATATA
Found at i:83054691 original size:28 final size:28
Alignment explanation
Indices: 83054654--83054733 Score: 67
Period size: 28 Copynumber: 2.8 Consensus size: 28
83054644 AAGAGATAAT
*
83054654 ATATGGTAAAATATATAAAATATAATAAA
1 ATATGATAAAATATATAAAATATAA-AAA
* *
83054683 AT-TTATAAACA-A-ATAATAATATAAACA
1 ATATGATAAA-ATATATAA-AATATAAAAA
83054710 ATATGATAAGTAATATATAAAATA
1 ATATGATAA--AATATATAAAATA
83054734 ATATATATAT
Statistics
Matches: 40, Mismatches: 4, Indels: 13
0.70 0.07 0.23
Matches are distributed among these distances:
27 8 0.20
28 18 0.45
29 4 0.10
30 6 0.15
31 4 0.10
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31
Consensus pattern (28 bp):
ATATGATAAAATATATAAAATATAAAAA
Found at i:83054784 original size:26 final size:26
Alignment explanation
Indices: 83054666--83054799 Score: 60
Period size: 24 Copynumber: 5.5 Consensus size: 26
83054656 ATGGTAAAAT
*
83054666 ATATAA-AATATAATAAA-ATTTATAA
1 ATATAATAATATAATAAATA-ATATAA
* * *
83054691 ACA-AATAATA-ATATAAACAATAT-G
1 ATATAATAATATA-ATAAATAATATAA
*
83054715 ATA-AGTAATAT-ATAAAATAATAT--
1 ATATAATAATATAAT-AAATAATATAA
* * * *
83054738 ATATATTAAAAT-GTAAGTAATATAA
1 ATATAATAATATAATAAATAATATAA
83054763 TATATAATAATA-AATAAATAATAT-A
1 -ATATAATAATATAATAAATAATATAA
83054788 ATA-AATAATATA
1 ATATAATAATATA
83054800 CAAAGAAAAA
Statistics
Matches: 84, Mismatches: 14, Indels: 23
0.69 0.12 0.19
Matches are distributed among these distances:
23 20 0.24
24 30 0.36
25 15 0.18
26 19 0.23
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (26 bp):
ATATAATAATATAATAAATAATATAA
Found at i:83054790 original size:12 final size:12
Alignment explanation
Indices: 83054693--83054799 Score: 73
Period size: 12 Copynumber: 8.8 Consensus size: 12
83054683 ATTTATAAAC
83054693 AAATAATA-ATAT
1 AAATAATATA-AT
* *
83054705 AAACAATATGAT
1 AAATAATATAAT
*
83054717 AAGTAATAT-AT
1 AAATAATATAAT
83054728 AAAATAATATATAT
1 -AAATAATATA-AT
*
83054742 ATTAA-AATGTAAGT
1 A--AATAATATAA-T
83054756 AATATAATAT-AT
1 AA-ATAATATAAT
83054768 -AATAATA-AAT
1 AAATAATATAAT
83054778 AAATAATATAAT
1 AAATAATATAAT
83054790 AAATAATATA
1 AAATAATATA
83054800 CAAAGAAAAA
Statistics
Matches: 76, Mismatches: 7, Indels: 24
0.71 0.07 0.22
Matches are distributed among these distances:
10 8 0.11
11 10 0.13
12 39 0.51
13 4 0.05
14 13 0.17
15 2 0.03
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.34
Consensus pattern (12 bp):
AAATAATATAAT
Found at i:83054811 original size:26 final size:26
Alignment explanation
Indices: 83054755--83054811 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
83054745 AAAATGTAAG
* * *
83054755 TAATATAATATATAATAATAAATAAA
1 TAATATAATAAATAATAACAAAGAAA
83054781 TAATATAATAAATAATATACAAAGAAA
1 TAATATAATAAATAATA-ACAAAGAAA
83054808 -AATA
1 TAATA
83054812 ATATATACCC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 20 0.74
27 7 0.26
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (26 bp):
TAATATAATAAATAATAACAAAGAAA
Found at i:83056383 original size:44 final size:44
Alignment explanation
Indices: 83056333--83056604 Score: 438
Period size: 44 Copynumber: 6.2 Consensus size: 44
83056323 ACTCACGAAC
* * *
83056333 GCCAAATCTGTTATC-TCTGATCTACTCCCTGACAATACAGAGAT
1 GCCAAATCTGCTATCTTC-GATCTGCTCTCTGACAATACAGAGAT
* *
83056377 GCCAAATCTGCTATCTTCAATCTGCTCTCTGACAATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
* *
83056421 GCCAAATCTGCTACCTTCGATCTGCTCTCTGACAATACAAAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
*
83056465 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATATAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
*
83056509 GCCAAATCTGCTATCTTCGATCTGCTCTCTGTCAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
*
83056553 GCCAAATTTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
83056597 GCCAAATC
1 GCCAAATC
83056605 ATCTTGGATC
Statistics
Matches: 210, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
44 208 0.99
45 2 0.01
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (44 bp):
GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
Found at i:83056723 original size:133 final size:131
Alignment explanation
Indices: 83056382--83056785 Score: 391
Period size: 132 Copynumber: 3.1 Consensus size: 131
83056372 GAGATGCCAA
* * * * *
83056382 ATCTGCTA--TCTTCAATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTACCTTCGATCTG
1 ATCTGCTATGTCTTCAATCTGCTCTCCGTCAATACAGAGATGCCAAATTTGCTATCTTCGATCTG
* * * * *
83056445 CTCTCTGACAATACAAAGATGCCAAATCTGCTATCTTCGATCTGC-TC-TC-TGACAATA--TAG
66 CTCTCTGACAATACAGAGATACCAAA--T-C-ATCTTGGATCTGCTTCAGCGT-A-AACACCT-G
* * *
83056505 AGATGCCAA
124 A-AGGTCAG
* *
83056514 ATCTGCTA--TCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATTTGCTATCTTCGATCTG
1 ATCTGCTATGTCTTCAATCTGCTCTCCGTCAATACAGAGATGCCAAATTTGCTATCTTCGATCTG
*
83056577 CTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCGATGCAG-AAACATCC-GAAG
66 CTCTCTGACAATACAGAGATACCAAATCATCTTGGATCTGCTTC-A-GC-GTAAACA-CCTGAAG
*
83056640 GTTAG
127 GTCAG
** * * * *
83056645 ATCTGCTATGTCTTCAATCTGCTCTCCGTCGAATATGGATATGCCAAATTT-TTTTCTTCGATTT
1 ATCTGCTATGTCTTCAATCTGCTCTCCGTC-AATACAGAGATGCCAAATTTGCTATCTTCGATCT
*
83056709 GTTCTCTGACAATACAGAGATACCAAATCATCTTGGATCTGCTTCAGCGTAAACACCTGAAGGTC
65 GCTCTCTGACAATACAGAGATACCAAATCATCTTGGATCTGCTTCAGCGTAAACACCTGAAGGTC
83056774 AG
130 AG
83056776 ATCTGCTATG
1 ATCTGCTATG
83056786 CTTTAGCCTG
Statistics
Matches: 234, Mismatches: 24, Indels: 29
0.82 0.08 0.10
Matches are distributed among these distances:
128 12 0.05
129 3 0.01
130 4 0.02
131 39 0.17
132 88 0.38
133 71 0.30
134 17 0.07
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (131 bp):
ATCTGCTATGTCTTCAATCTGCTCTCCGTCAATACAGAGATGCCAAATTTGCTATCTTCGATCTG
CTCTCTGACAATACAGAGATACCAAATCATCTTGGATCTGCTTCAGCGTAAACACCTGAAGGTCA
G
Found at i:83060066 original size:43 final size:44
Alignment explanation
Indices: 83060018--83060433 Score: 410
Period size: 43 Copynumber: 9.6 Consensus size: 44
83060008 GCTTTTCTCA
* ** *
83060018 CCTGCTAGGCTCG-AGGCCC-TATATCATTTCACCGGCACTATAG
1 CCTGCTAGGCACGAAGGCCCGTATATCACATCACCGGCACGA-AG
* * * * **
83060061 CCTGCTAGGCTCGAAAGCCCGAATAGT-ATC-TCATCGGCATTATAG
1 CCTGCTAGGCACGAAGGCCCGTATA-TCA-CATCACCGGCACGA-AG
* * * **
83060106 CCTGCTAGGCTCAAAGGCCCGAATAGT-ATTTCACCGGCATC-ATAG
1 CCTGCTAGGCACGAAGGCCCGTATA-TCACATCACCGGCA-CGA-AG
*
83060151 CCTGCTAGGCACGAAGGCCCGTATA-CACATCACCAGCACGAAG
1 CCTGCTAGGCACGAAGGCCCGTATATCACATCACCGGCACGAAG
* * *
83060194 CCTGCTAGACACGAAGGCCTGAATA-CACATCACCGGCACGAAG
1 CCTGCTAGGCACGAAGGCCCGTATATCACATCACCGGCACGAAG
**
83060237 CCTGCTAGGCACGAAGGCCCAAATA-CACATCACCGGCACGAAG
1 CCTGCTAGGCACGAAGGCCCGTATATCACATCACCGGCACGAAG
* * * *
83060280 CCTGCTAGGCACAAAGGCCCGAATA-CACATCATCAGCACGAAG
1 CCTGCTAGGCACGAAGGCCCGTATATCACATCACCGGCACGAAG
* *
83060323 CCTGCTAGGCACGAAGGCCCGAATA-CACATCACCGACACGAAG
1 CCTGCTAGGCACGAAGGCCCGTATATCACATCACCGGCACGAAG
83060366 CCTGCTAGGCACGAAGGCCCG-AGTA-CACATCACCGGCACGAAG
1 CCTGCTAGGCACGAAGGCCCGTA-TATCACATCACCGGCACGAAG
*
83060409 -CTGCTAGGCACGAAGGCCCGAATAT
1 CCTGCTAGGCACGAAGGCCCGTATAT
83060434 AAAGGCTCGA
Statistics
Matches: 330, Mismatches: 32, Indels: 22
0.86 0.08 0.06
Matches are distributed among these distances:
42 23 0.07
43 214 0.65
44 15 0.05
45 77 0.23
46 1 0.00
ACGTcount: A:0.29, C:0.32, G:0.23, T:0.15
Consensus pattern (44 bp):
CCTGCTAGGCACGAAGGCCCGTATATCACATCACCGGCACGAAG
Found at i:83060109 original size:45 final size:45
Alignment explanation
Indices: 83060046--83060171 Score: 182
Period size: 45 Copynumber: 2.8 Consensus size: 45
83060036 CTATATCATT
*
83060046 TCACCGGCACTATAGCCTGCTAGGCTCGAAAGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAAGCCCGAATAGTATC
* *
83060091 TCATCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAA-GCCCGAATAGTATC
* * *
83060136 TCACCGGCATCATAGCCTGCTAGGCACGAAGGCCCG
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAAGCCCG
83060172 TATACACATC
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
44 3 0.04
45 67 0.93
46 2 0.03
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.21
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAAGCCCGAATAGTATC
Found at i:83060255 original size:86 final size:85
Alignment explanation
Indices: 83060046--83060432 Score: 474
Period size: 86 Copynumber: 4.5 Consensus size: 85
83060036 CTATATCATT
* * * * * **
83060046 TCACCGGCACTATAGCCTGCTAGGCTCGAAAGCCCGAATAGTATC-TCATCGGCATTATAGCCTG
1 TCACCGGCACGA-AGCCTGCTAGGCACGAAGGCCCGAATA-CA-CATCA-CCGCACGA-AGCCTG
* * * **
83060110 CTAGGCTCAAAGGCCCGAATAGTATT
61 CTAGGCACGAAGGCCCGAATA-CACA
*
83060136 TCACCGGCATC-ATAGCCTGCTAGGCACGAAGGCCCGTATACACATCACCAGCACGAAGCCTGCT
1 TCACCGGCA-CGA-AGCCTGCTAGGCACGAAGGCCCGAATACACATCACC-GCACGAAGCCTGCT
* *
83060200 AGACACGAAGGCCTGAATACACA
63 AGGCACGAAGGCCCGAATACACA
*
83060223 TCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACGAAGCCTGCTAG
1 TCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC-GCACGAAGCCTGCTAG
*
83060288 GCACAAAGGCCCGAATACACA
65 GCACGAAGGCCCGAATACACA
* *
83060309 TCATCAGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAAGCCTGCTAG
1 TCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCG-CACGAAGCCTGCTAG
*
83060374 GCACGAAGGCCCGAGTACACA
65 GCACGAAGGCCCGAATACACA
83060395 TCACCGGCACGAAG-CTGCTAGGCACGAAGGCCCGAATA
1 TCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATA
83060433 TAAAGGCTCG
Statistics
Matches: 265, Mismatches: 27, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
85 25 0.09
86 160 0.60
87 11 0.04
88 25 0.09
89 8 0.03
90 35 0.13
91 1 0.00
ACGTcount: A:0.30, C:0.32, G:0.24, T:0.14
Consensus pattern (85 bp):
TCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGCACGAAGCCTGCTAGG
CACGAAGGCCCGAATACACA
Found at i:83060297 original size:129 final size:129
Alignment explanation
Indices: 83060104--83060602 Score: 660
Period size: 129 Copynumber: 3.8 Consensus size: 129
83060094 TCGGCATTAT
* * * **
83060104 AGCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCGGCATC-ATAGCCTGCTAGGCACGAAGG
1 AGCCTGCTAGGCACGAAGGCCCGAATA-CACATCACCGGCA-CGA-AGCCTGCTAGGCACGAAGG
*
83060168 CCCGTATACACATCACCAGCACGAAGCCTGCTAGACACGAAGGCCTGAATACACATCACCGGCAC
63 CCCGAATACACATCACCAGCACGAAGCCTGCTAGACACGAAGGCCTGAATACACATCACCGGCAC
83060233 GA
128 GA
* *
83060235 AGCCTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCC
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCC
* * * *
83060300 GAATACACATCATCAGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGA
66 GAATACACATCACCAGCACGAAGCCTGCTAGACACGAAGGCCTGAATACACATCACCGGCACGA
*
83060364 AGCCTGCTAGGCACGAAGGCCCGAGTACACATCACCGGCACGAAG-CTGCTAGGCACGAAGGCCC
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGG--C
* * *
83060428 GAATATAAAGGCTCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCTGGATACAC
64 -----------C-CGAATACACATCACCAGCACGAAGCCTGCTAGACACGAAGGCCTGAATACAC
83060493 ATCACCGGCACGA
117 ATCACCGGCACGA
*
83060506 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCATGAAGGCCC
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCC
* *
83060571 GAATACACATCACCGGCACAAAGCCTGCTAGA
66 GAATACACATCACCAGCACGAAGCCTGCTAGA
83060603 TTTAGCCCGC
Statistics
Matches: 328, Mismatches: 24, Indels: 34
0.85 0.06 0.09
Matches are distributed among these distances:
128 15 0.05
129 155 0.47
130 13 0.04
131 24 0.07
141 2 0.01
142 104 0.32
143 15 0.05
ACGTcount: A:0.31, C:0.33, G:0.24, T:0.12
Consensus pattern (129 bp):
AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCC
GAATACACATCACCAGCACGAAGCCTGCTAGACACGAAGGCCTGAATACACATCACCGGCACGA
Found at i:83060456 original size:99 final size:100
Alignment explanation
Indices: 83060336--83060601 Score: 348
Period size: 86 Copynumber: 2.8 Consensus size: 100
83060326 GCTAGGCACG
83060336 AAGGCCCGAATACACATCACCGACACGAAGCCTGCTAGGCACGAAGGCCC-GAGTACACATCACC
1 AAGGCCCGAATACACATCACCGACACGAAGCCTGCTAGGCACGAAGGCCCGGA-TACACATCACC
83060400 GGCACGAAG-CTGCTAGGCACGAAGGCCCGAATATA
65 GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATATA
* * *
83060435 AAGGCTCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCTGGATACACATCACCG
1 AAGGCCCGAATACACATCACCGACACGAAGCCTGCTAGGCACGAAGGCCCGGATACACATCACCG
83060500 GCACGAAGCCTGCTAGG--C--A----CG------
66 GCACGAAGCCTGCTAGGCACGAAGGCCCGAATATA
* * *
83060521 AAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCATGAAGGCCCGAATACACATCACCG
1 AAGGCCCGAATACACATCACCGACACGAAGCCTGCTAGGCACGAAGGCCCGGATACACATCACCG
*
83060586 GCACAAAGCCTGCTAG
66 GCACGAAGCCTGCTAG
83060602 ATTTAGCCCG
Statistics
Matches: 157, Mismatches: 8, Indels: 17
0.86 0.04 0.09
Matches are distributed among these distances:
86 76 0.48
92 2 0.01
96 1 0.01
98 1 0.01
99 67 0.43
100 10 0.06
ACGTcount: A:0.31, C:0.33, G:0.25, T:0.11
Consensus pattern (100 bp):
AAGGCCCGAATACACATCACCGACACGAAGCCTGCTAGGCACGAAGGCCCGGATACACATCACCG
GCACGAAGCCTGCTAGGCACGAAGGCCCGAATATA
Found at i:83060466 original size:142 final size:143
Alignment explanation
Indices: 83060292--83060575 Score: 489
Period size: 142 Copynumber: 2.0 Consensus size: 143
83060282 TGCTAGGCAC
*
83060292 AAAGGCCCGAATACACATCATCAGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
1 AAAGGCCCGAATACACATCACCAGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
*
83060357 GACACGAAGCCTGCTAGGCACGAAGGCCCGAGTACACATCACCGGCACGAAG-CTGCTAGGCACG
66 GACACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACG
83060421 AAGGCCCGAATAT
131 AAGGCCCGAATAT
* * * *
83060434 AAAGGCTCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCTGGATACACATCACC
1 AAAGGCCCGAATACACATCACCAGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
* *
83060499 GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCATG
66 GACACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACG
83060564 AAGGCCCGAATA
131 AAGGCCCGAATA
83060576 CACATCACCG
Statistics
Matches: 133, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
142 110 0.83
143 23 0.17
ACGTcount: A:0.32, C:0.32, G:0.25, T:0.11
Consensus pattern (143 bp):
AAAGGCCCGAATACACATCACCAGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
GACACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACG
AAGGCCCGAATAT
Found at i:83060491 original size:43 final size:43
Alignment explanation
Indices: 83060435--83060601 Score: 289
Period size: 43 Copynumber: 3.9 Consensus size: 43
83060425 CCCGAATATA
*
83060435 AAGGCTCGAATACACATCACCGGCACGAAGCCTGCTAGGCACG
1 AAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACG
* *
83060478 AAGGCCTGGATACACATCACCGGCACGAAGCCTGCTAGGCACG
1 AAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACG
*
83060521 AAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCATG
1 AAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACG
*
83060564 AAGGCCCGAATACACATCACCGGCACAAAGCCTGCTAG
1 AAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAG
83060602 ATTTAGCCCG
Statistics
Matches: 117, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 117 1.00
ACGTcount: A:0.31, C:0.33, G:0.25, T:0.11
Consensus pattern (43 bp):
AAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACG
Found at i:83060570 original size:185 final size:186
Alignment explanation
Indices: 83060258--83060601 Score: 600
Period size: 185 Copynumber: 1.9 Consensus size: 186
83060248 CGAAGGCCCA
*
83060258 AATACACATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACACATCATCAGCACGAAG
1 AATACACATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACACATCACCAGCACGAAG
83060323 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAAGCCTGCTAGGCACGAAGGCCCGA
66 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAAGCCTGCTAGGCACGAAGGCCCGA
* *
83060388 GTACACATCACCGGCACGAAG-CTGCTAGGCACGAAGGCCCGAATATAAAGGCTCG
131 ATACACATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATATAAAGGCTCG
* * * *
83060443 AATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCTGGATACACATCACCGGCACGAAG
1 AATACACATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACACATCACCAGCACGAAG
* *
83060508 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCATGAAGGCCCGA
66 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAAGCCTGCTAGGCACGAAGGCCCGA
83060573 ATACACATCACCGGCACAAAGCCTGCTAG
131 ATACACATCACCGGCACAAAGCCTGCTAG
83060602 ATTTAGCCCG
Statistics
Matches: 149, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
185 142 0.95
186 7 0.05
ACGTcount: A:0.32, C:0.33, G:0.24, T:0.11
Consensus pattern (186 bp):
AATACACATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACACATCACCAGCACGAAG
CCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAAGCCTGCTAGGCACGAAGGCCCGA
ATACACATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATATAAAGGCTCG
Found at i:83064539 original size:48 final size:48
Alignment explanation
Indices: 83064479--83064581 Score: 120
Period size: 48 Copynumber: 2.1 Consensus size: 48
83064469 GTCCAACTAT
* * * *
83064479 GGTCTTATACTAGCTCTGCTCT-GCCCGTGCTGATGCCTATTCCC-GATA
1 GGTCTTACACTAGCACT-CACTAGCCCGTGCCGATGCCTA-TCCCAGATA
* *
83064527 GGTCTTACACTAGCACTCACTAGGCTGTGCCGATGCCTATCCCAGATA
1 GGTCTTACACTAGCACTCACTAGCCCGTGCCGATGCCTATCCCAGATA
83064575 GGTCTTA
1 GGTCTTA
83064582 TGCTTAGCAC
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
47 7 0.15
48 40 0.85
ACGTcount: A:0.18, C:0.30, G:0.21, T:0.30
Consensus pattern (48 bp):
GGTCTTACACTAGCACTCACTAGCCCGTGCCGATGCCTATCCCAGATA
Found at i:83065934 original size:45 final size:46
Alignment explanation
Indices: 83065847--83065998 Score: 147
Period size: 45 Copynumber: 3.4 Consensus size: 46
83065837 GCTTTTCACA
* * * *
83065847 CCTGCTAGGCTCG--AGGCCC-GATA-TCATTTCACCAGCACTATAG
1 CCTGCTAGGCTCGAAAGGCCCAAATAGT-ATCTCACCGGCATTATAG
* *
83065890 CCTTCTAGGCTCGAAA-TCCCAAATAGTATCTCACCGGCATTATAG
1 CCTGCTAGGCTCGAAAGGCCCAAATAGTATCTCACCGGCATTATAG
* * * *
83065935 CCTGCTAGGCTC-AAAGGCCCGAATAGTATTTCACCGACATCATAG
1 CCTGCTAGGCTCGAAAGGCCCAAATAGTATCTCACCGGCATTATAG
*
83065980 CCTGCTAGGCACG-AAGGCC
1 CCTGCTAGGCTCGAAAGGCC
83065999 TGAATACACA
Statistics
Matches: 90, Mismatches: 13, Indels: 10
0.80 0.12 0.09
Matches are distributed among these distances:
43 12 0.13
44 6 0.07
45 71 0.79
46 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.20, T:0.22
Consensus pattern (46 bp):
CCTGCTAGGCTCGAAAGGCCCAAATAGTATCTCACCGGCATTATAG
Found at i:83066034 original size:43 final size:43
Alignment explanation
Indices: 83065933--83066331 Score: 602
Period size: 43 Copynumber: 9.2 Consensus size: 43
83065923 CCGGCATTAT
* * * ** *
83065933 AGCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCGACATC-A
1 AGCCTGCTAGGCACGAAGGCCCGAATA-CACATCACCGGCA-CGA
* *
83065977 TAGCCTGCTAGGCACGAAGGCCTGAATACACATCACCAGCACGA
1 -AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
* *
83066021 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCAGGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
*
83066064 AGCCTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
* *
83066107 AGCCTGCTAAGCACGAAGGCCCGAATACACATCACCGACACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
*
83066150 AGCCTGCTAGGCACGAAGGCCAGAATACACATCACCGGCACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
83066193 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
* *
83066236 AGCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCATGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
* *
83066279 AGCCTACTAGGCACGAAGGCTCGAATACACATCACCGGCACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
83066322 AGCCTGCTAG
1 AGCCTGCTAG
83066332 ATTTAACCCA
Statistics
Matches: 326, Mismatches: 27, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
43 293 0.90
44 9 0.03
45 24 0.07
ACGTcount: A:0.32, C:0.33, G:0.24, T:0.12
Consensus pattern (43 bp):
AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
Found at i:83070437 original size:28 final size:28
Alignment explanation
Indices: 83070396--83070464 Score: 111
Period size: 28 Copynumber: 2.5 Consensus size: 28
83070386 ATGGTACTCT
*
83070396 GTGTACGAAATATTGAGAATGACACTTA
1 GTGTGCGAAATATTGAGAATGACACTTA
*
83070424 GTGTGCGAGATATTGAGAATGACACTTA
1 GTGTGCGAAATATTGAGAATGACACTTA
*
83070452 GTGTGCAAAATAT
1 GTGTGCGAAATAT
83070465 CGAATGATTC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.36, C:0.10, G:0.25, T:0.29
Consensus pattern (28 bp):
GTGTGCGAAATATTGAGAATGACACTTA
Found at i:83072513 original size:29 final size:29
Alignment explanation
Indices: 83072467--83072529 Score: 99
Period size: 29 Copynumber: 2.2 Consensus size: 29
83072457 CTGTAACCGA
* *
83072467 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTATGCAAGATCGGTTGTTGAG
*
83072496 GCACTGTGTATGCAAGATCGGTTGTTGGG
1 GCACTGTGTATGCAAGATCGGTTGTTGAG
83072525 GCACT
1 GCACT
83072530 AAGTGTGTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.16, C:0.16, G:0.38, T:0.30
Consensus pattern (29 bp):
GCACTGTGTATGCAAGATCGGTTGTTGAG
Found at i:83078869 original size:26 final size:26
Alignment explanation
Indices: 83078838--83078945 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
83078828 TGAAATGCCC
*
83078838 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
83078864 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
83078890 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
83078916 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
83078942 ATCA
1 ATCA
83078946 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:83080541 original size:28 final size:28
Alignment explanation
Indices: 83080509--83080578 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
83080499 TATGGTACTC
*
83080509 AGTGTACGAAATATTGAGAATGACACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
*
83080537 AGTGTGCGAGATATTGAGAATGACACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
*
83080565 AGTGTGCAAAATAT
1 AGTGTGCGAAATAT
83080579 CGAATGTTCA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (28 bp):
AGTGTGCGAAATATTGAGAATGACACTT
Found at i:83084072 original size:54 final size:54
Alignment explanation
Indices: 83083990--83084103 Score: 228
Period size: 54 Copynumber: 2.1 Consensus size: 54
83083980 ACTTTAGAAA
83083990 TTCCTTAGCCTCCTCCTCCTTTACTGGTTCCTTGACAGGCACTTCAGCCTCTTT
1 TTCCTTAGCCTCCTCCTCCTTTACTGGTTCCTTGACAGGCACTTCAGCCTCTTT
83084044 TTCCTTAGCCTCCTCCTCCTTTACTGGTTCCTTGACAGGCACTTCAGCCTCTTT
1 TTCCTTAGCCTCCTCCTCCTTTACTGGTTCCTTGACAGGCACTTCAGCCTCTTT
83084098 TTCCTT
1 TTCCTT
83084104 CTCCGTACTA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 60 1.00
ACGTcount: A:0.11, C:0.37, G:0.12, T:0.40
Consensus pattern (54 bp):
TTCCTTAGCCTCCTCCTCCTTTACTGGTTCCTTGACAGGCACTTCAGCCTCTTT
Found at i:83091540 original size:47 final size:47
Alignment explanation
Indices: 83091472--83091907 Score: 710
Period size: 47 Copynumber: 9.3 Consensus size: 47
83091462 ACAAGATATG
83091472 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * *
83091519 TATACGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
83091566 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
83091613 TATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
83091660 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
83091707 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
83091754 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * * *
83091801 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
83091848 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
83091895 TAAATGTGATAAG
1 TATATGTGATAAG
83091908 TCCCGAAGGG
Statistics
Matches: 357, Mismatches: 32, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 357 1.00
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:83091666 original size:25 final size:25
Alignment explanation
Indices: 83091638--83091715 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
83091628 CTAATGGCCA
83091638 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* * ***
83091663 ATGTGAT-AAGGCCG-AA-TGGCCA-
1 ATGTGATGAATG-TGAAAGTGTATAT
83091685 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
83091710 ATGTGA
1 ATGTGA
83091716 CAAGGCCTAA
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 8 0.21
25 14 0.37
ACGTcount: A:0.35, C:0.05, G:0.29, T:0.31
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:83098648 original size:15 final size:16
Alignment explanation
Indices: 83098630--83098662 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
83098620 ATAAGCCAAT
*
83098630 TATAAA-CATATAAAA
1 TATAAATCAAATAAAA
83098645 TATAAATCAAATAAAA
1 TATAAATCAAATAAAA
83098661 TA
1 TA
83098663 AAAAAGATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (16 bp):
TATAAATCAAATAAAA
Found at i:83098946 original size:20 final size:19
Alignment explanation
Indices: 83098908--83098949 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
83098898 TAATATATGG
*
83098908 TAAAATATATAACATATAA
1 TAAAATATATAACAAATAA
*
83098927 TAAAATTTATAAACAAATAA
1 TAAAATATAT-AACAAATAA
83098947 TAA
1 TAA
83098950 TATAAACAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (19 bp):
TAAAATATATAACAAATAA
Found at i:83098983 original size:33 final size:35
Alignment explanation
Indices: 83098943--83099045 Score: 104
Period size: 33 Copynumber: 2.9 Consensus size: 35
83098933 TTATAAACAA
*
83098943 ATAATAATATAAACAATATGATAAGTAATATATA-
1 ATAATAATATAAATAATATGATAAGTAATATATAT
* *
83098977 A-AATAATATATATTAAAATG-TAAGTAATATAATAT
1 ATAATAATATA-AATAATATGATAAGTAATAT-ATAT
* *
83099012 ATAATAATATATAAATAATATAATAAATAATATA
1 ATAAT-A-ATATAAATAATATGATAAGTAATATA
83099046 CAAAGAAAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
33 19 0.35
34 10 0.18
35 1 0.02
36 3 0.05
37 8 0.15
38 14 0.25
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (35 bp):
ATAATAATATAAATAATATGATAAGTAATATATAT
Found at i:83099008 original size:26 final size:26
Alignment explanation
Indices: 83098974--83099043 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 26
83098964 TAAGTAATAT
* * *
83098974 ATAAAATAATATATATTAAAATGTAA
1 ATAATATAATATATAATAAAATATAA
* *
83099000 GTAATATAATATATAATAATATATAA
1 ATAATATAATATATAATAAAATATAA
*
83099026 ATAATATAATAAATAATA
1 ATAATATAATATATAATA
83099044 TACAAAGAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (26 bp):
ATAATATAATATATAATAAAATATAA
Found at i:83099057 original size:26 final size:26
Alignment explanation
Indices: 83099002--83099057 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
83098992 AAATGTAAGT
* * * *
83099002 AATATAATATATAATAATATATAAAT
1 AATATAATAAATAATAATACAAAAAA
83099028 AATATAATAAATAAT-ATACAAAGAAA
1 AATATAATAAATAATAATACAAA-AAA
83099054 AATA
1 AATA
83099058 ATATATACCC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (26 bp):
AATATAATAAATAATAATACAAAAAA
Found at i:83101811 original size:512 final size:513
Alignment explanation
Indices: 83100387--83102195 Score: 3196
Period size: 512 Copynumber: 3.5 Consensus size: 513
83100377 GGGCTGTTAC
83100387 AATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATT
1 AATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATT
*
83100452 TTCTGGAATATTATTTATCGATTTTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGA
66 TTCCGGAATATTATTTATCGATTTTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGA
* *
83100517 CTAGTAAACCCAATTAACTCCTAGCTTTCACCTGGAACTCGATAAACTTACTCAAAACTAGTAGA
131 CTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACTCGATAAACTTACTCAAAACTAGTAGA
*
83100582 CCTATTTTTAGGGCGTTACAAACACAACATAATTTGGAAAATTTGCGATTACAAGTAGGTTTGGA
196 CCTATTTTTAGGGCGTTACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGA
* *
83100647 CAATTAGGATTGTGATCGAGAATCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAA
261 CAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAA
83100712 AGAGGAAAATATTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATT
326 AGAGGAAAATATTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATT
*
83100777 AGTATTCATGATATTTGTGATATTTTTCTAAAAATATTTTTATTTTCCCGAATATTATATACCTA
391 AGTATTCATGATATTCGTGATATTTTTCTAAAAATATTTTTATTTTCCCGAATATTATATACCTA
83100842 TTTAGTTAATATTGTAACTTCTCTCAATGAAACCCCATTTTAATTTATTTTTCAATAA
456 TTTAGTTAATATTGTAACTTCTCTCAATGAAACCCCATTTTAATTTATTTTTCAATAA
*
83100900 AATATTCATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATT
1 AATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATT
* *
83100965 TTCCGGAATATTACTTACCGATTTTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGA
66 TTCCGGAATATTATTTATCGATTTTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGA
* *
83101030 CTAGTAAACCCTATTAACTCCTAGCTTTCACCCGGAACTCGATGAACTTACTCAAAACTAGTAGA
131 CTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACTCGATAAACTTACTCAAAACTAGTAGA
* * *
83101095 CCTATTTTTAGGGCATTACAAACACAACATACTTTGGAAAATCTGCGATTACAAGTAGGTTCGGA
196 CCTATTTTTAGGGCGTTACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGA
* *
83101160 CAATTAGGATTGTGATCAAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAATGGAA
261 CAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAA
* * * *
83101225 AGAGGAAAATATAGGGCGGTACTCTCGTGGAAGAATTTGTGCCAGCCTAAAAGGATGGGGGTATT
326 AGAGGAAAATATTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATT
83101290 AGTATTCATGATATTCGTGATATTTTTCTAAAAATATTTTTATTTTCCCGAATATTATATACCTA
391 AGTATTCATGATATTCGTGATATTTTTCTAAAAATATTTTTATTTTCCCGAATATTATATACCTA
*
83101355 TTTAGTTAATATTGTAACTTCTCTCAATGAAACCCCATTTTAATATATTTTTCAATAA
456 TTTAGTTAATATTGTAACTTCTCTCAATGAAACCCCATTTTAATTTATTTTTCAATAA
*
83101413 AATATTTATTTTAACCAAAAAGTATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATT
1 AATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATT
* * * *
83101478 TTCCGGAATATTATTTATCAATTTTAAAATAAAATTAAGCTAACTAA-TTTTTTTAAACAAATGA
66 TTCCGGAATATTATTTATCGATTTTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGA
* * *
83101542 CTAGTAAAACCGATTAACTCCTAGTTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGA
131 CTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACTCGATAAACTTACTCAAAACTAGTAGA
* *
83101607 CCTATTTGTAGGGCGTTACAAACACAACATACTTTGGAAAATTTGCGATTACAACTAGGTTTGGA
196 CCTATTTTTAGGGCGTTACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGA
83101672 CAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAA
261 CAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAA
* *
83101737 GGAGGAAAATATTGGGCGATACTCCCGTGGAAGAATTTGTGTTAGCCTAAAAGGATGGGGGTATT
326 AGAGGAAAATATTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATT
* *
83101802 AGTATTCATGATATTCGTGATATTTTTCTAAAAATATTTTTATTTTTCGGAATATTATATACCTA
391 AGTATTCATGATATTCGTGATATTTTTCTAAAAATATTTTTATTTTCCCGAATATTATATACCTA
83101867 TTTAGTTAATATTGTAA-TTGCTCTCAATGAAACCCCATTTTAATTTATTTTTCAATAA
456 TTTAGTTAATATTGTAACTT-CTCTCAATGAAACCCCATTTTAATTTATTTTTCAATAA
83101925 AATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATT
1 AATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATT
* *
83101990 TTTCAGAATATTATTTA-CTGA-TTTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATG
66 TTCCGGAATATTATTTATC-GATTTTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATG
* *
83102053 AGTAGTTAACCCGATTAACTCCTAGCTTTCACCCGGAACTCGATAAACTTACTCAAAACTAGTAG
130 ACTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACTCGATAAACTTACTCAAAACTAGTAG
83102118 ACCTATTTTTAGGGCCG-TACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTG
195 ACCTATTTTTAGGG-CGTTACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTG
83102182 GACAATTAGGATTG
259 GACAATTAGGATTG
83102196 GACAAAGGGT
Statistics
Matches: 1228, Mismatches: 64, Indels: 9
0.94 0.05 0.01
Matches are distributed among these distances:
511 26 0.02
512 603 0.49
513 599 0.49
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (513 bp):
AATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATT
TTCCGGAATATTATTTATCGATTTTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGA
CTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACTCGATAAACTTACTCAAAACTAGTAGA
CCTATTTTTAGGGCGTTACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGA
CAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAA
AGAGGAAAATATTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATT
AGTATTCATGATATTCGTGATATTTTTCTAAAAATATTTTTATTTTCCCGAATATTATATACCTA
TTTAGTTAATATTGTAACTTCTCTCAATGAAACCCCATTTTAATTTATTTTTCAATAA
Found at i:83108129 original size:47 final size:47
Alignment explanation
Indices: 83108078--83108200 Score: 165
Period size: 47 Copynumber: 2.6 Consensus size: 47
83108068 TAATACCTAA
* * * * *
83108078 ATTTGGCTACGAGCCTTGATATAGGTATTCTGAGAGGAGTTACCTTG
1 ATTTGGCTACGAGCCATGGTATAGGTACTCCGAGAGAAGTTACCTTG
* *
83108125 ATTTGGCTACGAGCCATGGTATAGGTACTCCGGGATAAGTTACCTTG
1 ATTTGGCTACGAGCCATGGTATAGGTACTCCGAGAGAAGTTACCTTG
* *
83108172 ATTTGGCTATGGGCCATGGTATAGGTACT
1 ATTTGGCTACGAGCCATGGTATAGGTACT
83108201 TATCGATTGT
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (47 bp):
ATTTGGCTACGAGCCATGGTATAGGTACTCCGAGAGAAGTTACCTTG
Found at i:83109974 original size:7 final size:7
Alignment explanation
Indices: 83109964--83109999 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
83109954 TTTTATATAC
83109964 TAATAAA
1 TAATAAA
83109971 TAATAAA
1 TAATAAA
83109978 TAATGAAA
1 TAAT-AAA
*
83109986 TAATATA
1 TAATAAA
83109993 TAATAAA
1 TAATAAA
83110000 AGGAAGATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (7 bp):
TAATAAA
Found at i:83109988 original size:15 final size:14
Alignment explanation
Indices: 83109964--83109999 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
83109954 TTTTATATAC
83109964 TAATAAATAATAAA
1 TAATAAATAATAAA
*
83109978 TAATGAAATAATATA
1 TAAT-AAATAATAAA
83109993 TAATAAA
1 TAATAAA
83110000 AGGAAGATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (14 bp):
TAATAAATAATAAA
Found at i:83110043 original size:17 final size:17
Alignment explanation
Indices: 83110021--83110096 Score: 75
Period size: 17 Copynumber: 4.4 Consensus size: 17
83110011 ATAGGGAATA
83110021 ATATATAATAAAATATT
1 ATATATAATAAAATATT
83110038 ATATATAATAAAATATAT
1 ATATATAATAAAATAT-T
* *
83110056 AAATAATATGATAAAATATC
1 --AT-ATATAATAAAATATT
*
83110076 ATATA-AATAAAA-ATA
1 ATATATAATAAAATATT
83110091 ATATAT
1 ATATAT
83110097 TCTATTTTTA
Statistics
Matches: 50, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
15 7 0.14
16 6 0.12
17 19 0.38
18 3 0.06
20 2 0.04
21 13 0.26
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.36
Consensus pattern (17 bp):
ATATATAATAAAATATT
Found at i:83110069 original size:24 final size:23
Alignment explanation
Indices: 83110038--83110085 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 23
83110028 ATAAAATATT
83110038 ATATATAATAAAAT-ATATAAATA
1 ATATATAA-AAAATCATATAAATA
*
83110061 ATATGATAAAATATCATATAAATA
1 ATAT-ATAAAAAATCATATAAATA
83110085 A
1 A
83110086 AAATAATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 8 0.36
24 14 0.64
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (23 bp):
ATATATAAAAAATCATATAAATA
Found at i:83111738 original size:44 final size:44
Alignment explanation
Indices: 83111678--83112169 Score: 709
Period size: 44 Copynumber: 11.2 Consensus size: 44
83111668 AGCCGAAATG
** *
83111678 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCCGCTACC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATC
* * * * * *
83111722 CTCGATCTGCTCTCTGAAAATATAGAGGCACCAAATCTACCATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATC
* *
83111766 TTCGA-CTTGCTCTCTGACCATACAGAGATGCCAAATCTACTATC
1 TTCGATC-TGCTCTCTGACAATACAGAGACGCCAAATCTACTATC
* *
83111810 TTCGATCTGCTCTCTGACAATATAGAGACGTC-AATCCTACTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAAT-CTACTATC
* * *
83111854 TTCGATCTGCTCTCTGACAATATAGGGACGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATC
* *
83111898 TTCGATCTGCTCTCTGACAATACAGGGACGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATC
83111942 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATC
* * * *
83111986 TTCGATCTACTCTCTGACAATACAGGGATGCCAAATCTACTATA
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATC
*
83112030 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATC
*
83112074 TTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTACTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATC
* * *
83112118 TTTGATATGCTCTCTGACAATACAGGGACGCCAAATCTACTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATC
83112162 TTCGATCT
1 TTCGATCT
83112170 ACATTGTCCC
Statistics
Matches: 400, Mismatches: 44, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
43 4 0.01
44 392 0.98
45 4 0.01
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (44 bp):
TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATC
Found at i:83124100 original size:15 final size:14
Alignment explanation
Indices: 83124076--83124226 Score: 57
Period size: 14 Copynumber: 10.4 Consensus size: 14
83124066 TTTTATATAC
83124076 TAATAAATAATAAA
1 TAATAAATAATAAA
*
83124090 TAATGAAATAATATA
1 TAAT-AAATAATAAA
83124105 TAATAAA-AGA-AAGA
1 TAATAAATA-ATAA-A
***
83124119 TAAT--ATAGGGAA
1 TAATAAATAATAAA
*
83124131 TAATATATAATAAAA
1 TAATAAATAAT-AAA
*
83124146 TATGATATATAATAAAA
1 TA--ATAAATAAT-AAA
83124163 TATATAAATAA-AATA
1 TA-ATAAATAATAA-A
83124178 TAATGAAAT-ATAAA
1 TAAT-AAATAATAAA
*
83124192 TAATATGATAA-AATA
1 TAATA-AATAATAA-A
83124207 TCATATAAATAA-AAA
1 T-A-ATAAATAATAAA
83124222 TAATA
1 TAATA
83124227 TATACTATTT
Statistics
Matches: 108, Mismatches: 11, Indels: 37
0.69 0.07 0.24
Matches are distributed among these distances:
12 6 0.06
13 8 0.07
14 31 0.29
15 31 0.29
16 14 0.13
17 18 0.17
ACGTcount: A:0.64, C:0.01, G:0.06, T:0.30
Consensus pattern (14 bp):
TAATAAATAATAAA
Found at i:83124110 original size:29 final size:28
Alignment explanation
Indices: 83124070--83124230 Score: 82
Period size: 29 Copynumber: 5.2 Consensus size: 28
83124060 TTTAATTTTT
83124070 ATATACTAATAAATAATAAATAATGAAATA
1 ATATA-TAATAAATAATAAATAAT-AAATA
83124100 ATATATAATAAA-AGA-AAGATAATATAGGGAATA
1 ATATATAATAAATA-ATAA-AT-A-ATA---AATA
*
83124133 ATATATAATAAAATATGATATATAATAAAATA
1 ATATATAAT-AAATA--ATAAATAAT-AAATA
*
83124165 TATAAATAA-AATATAATGAAAT-ATAAATA
1 -ATATATAATAA-ATAAT-AAATAATAAATA
83124194 ATATGATAA-AATATCATATAAATAA-AAATA
1 ATAT-ATAATAA-AT-A-ATAAATAATAAATA
83124224 ATATATA
1 ATATATA
83124231 CTATTTTTAT
Statistics
Matches: 108, Mismatches: 4, Indels: 39
0.72 0.03 0.26
Matches are distributed among these distances:
28 6 0.06
29 27 0.25
30 25 0.23
31 10 0.09
32 7 0.06
33 20 0.19
34 5 0.05
35 3 0.03
36 4 0.04
37 1 0.01
ACGTcount: A:0.63, C:0.01, G:0.06, T:0.30
Consensus pattern (28 bp):
ATATATAATAAATAATAAATAATAAATA
Found at i:83124148 original size:10 final size:10
Alignment explanation
Indices: 83124129--83124217 Score: 60
Period size: 10 Copynumber: 8.9 Consensus size: 10
83124119 TAATATAGGG
*
83124129 AATAATATAT
1 AATAAAATAT
83124139 AATAAAATAT
1 AATAAAATAT
*
83124149 GAT---ATAT
1 AATAAAATAT
83124156 AATAAAATATAT
1 AAT-AAA-ATAT
83124168 AAATAAAATAT
1 -AATAAAATAT
*
83124179 AATGAAATAT
1 AATAAAATAT
*
83124189 AA-ATAATAT
1 AATAAAATAT
*
83124198 GATAAAATAT
1 AATAAAATAT
*
83124208 CATATAAATA
1 AATA-AAATA
83124218 AAAATAATAT
Statistics
Matches: 62, Mismatches: 9, Indels: 15
0.72 0.10 0.17
Matches are distributed among these distances:
7 6 0.10
9 6 0.10
10 31 0.50
11 9 0.15
12 7 0.11
13 3 0.05
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (10 bp):
AATAAAATAT
Found at i:83124155 original size:17 final size:16
Alignment explanation
Indices: 83124133--83124201 Score: 68
Period size: 17 Copynumber: 4.2 Consensus size: 16
83124123 ATAGGGAATA
83124133 ATATATAATAAAATATG
1 ATATATAA-AAAATATG
83124150 ATATATAATAAAATAT-
1 ATATATAA-AAAATATG
* *
83124166 ATAAATAAAATATAATG
1 ATATATAAAAAAT-ATG
* *
83124183 AAATATAAATAATATG
1 ATATATAAAAAATATG
83124199 ATA
1 ATA
83124202 AAATATCATA
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
15 4 0.09
16 14 0.33
17 25 0.58
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.33
Consensus pattern (16 bp):
ATATATAAAAAATATG
Found at i:83124173 original size:40 final size:42
Alignment explanation
Indices: 83124129--83124226 Score: 112
Period size: 40 Copynumber: 2.3 Consensus size: 42
83124119 TAATATAGGG
* *
83124129 AATAATATATAATAAAATAT-GAT-ATATAATAAAATATATA
1 AATAAAATATAATAAAATATAAATAATATAATAAAATATATA
* *
83124169 AATAAAATATAATGAAATATAAATAATATGATAAAATATCATATA
1 AATAAAATATAATAAAATATAAATAATATAAT-AAA-AT-ATATA
83124214 AATAAAA-ATAATA
1 AATAAAATATAATA
83124227 TATACTATTT
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
40 18 0.38
41 2 0.04
42 6 0.12
43 3 0.06
44 7 0.15
45 12 0.25
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (42 bp):
AATAAAATATAATAAAATATAAATAATATAATAAAATATATA
Found at i:83124205 original size:19 final size:20
Alignment explanation
Indices: 83124129--83124217 Score: 69
Period size: 19 Copynumber: 4.4 Consensus size: 20
83124119 TAATATAGGG
83124129 AATAATATATAATAAAATAT-
1 AATAA-ATATAATAAAATATA
*
83124149 GAT--ATATAATAAAATATATA
1 AATAAATATAAT-AAA-ATATA
*
83124169 AATAAAATATAATGAAATATA
1 AAT-AAATATAATAAAATATA
*
83124190 AAT-AATATGATAAAATATCA
1 AATAAATATAATAAAATAT-A
*
83124210 TATAAATA
1 AATAAATA
83124218 AAAATAATAT
Statistics
Matches: 55, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
17 7 0.13
18 3 0.05
19 17 0.31
20 7 0.13
21 12 0.22
22 2 0.04
23 7 0.13
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (20 bp):
AATAAATATAATAAAATATA
Found at i:83124223 original size:30 final size:29
Alignment explanation
Indices: 83124135--83124228 Score: 104
Period size: 30 Copynumber: 3.2 Consensus size: 29
83124125 AGGGAATAAT
83124135 ATATAATAAAATATGATATATAAT-AAAAT-
1 ATATAATAAAATAT-ATATA-AATAAAAATA
*
83124164 ATATAAATAAAATATA-ATGAAATATAAATA
1 ATAT-AATAAAATATATAT-AAATAAAAATA
*
83124194 ATATGATAAAATATCATATAAATAAAAATA
1 ATATAATAAAATAT-ATATAAATAAAAATA
83124224 ATATA
1 ATATA
83124229 TACTATTTTT
Statistics
Matches: 55, Mismatches: 4, Indels: 11
0.79 0.06 0.16
Matches are distributed among these distances:
28 5 0.09
29 19 0.35
30 29 0.53
31 2 0.04
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (29 bp):
ATATAATAAAATATATATAAATAAAAATA
Found at i:83124229 original size:17 final size:15
Alignment explanation
Indices: 83124133--83124230 Score: 82
Period size: 15 Copynumber: 6.5 Consensus size: 15
83124123 ATAGGGAATA
83124133 ATATAT-AATAAAAT
1 ATATATAAATAAAAT
83124147 ATGATATATAAT-AAA-
1 AT-ATATA-AATAAAAT
83124162 ATATATAAATAAAAT
1 ATATATAAATAAAAT
83124177 ATA-ATGAAATATAAAT
1 ATATAT-AAATA-AAAT
*
83124193 A-ATAT-GATAAAAT
1 ATATATAAATAAAAT
83124206 ATCATATAAATAAAAAT
1 AT-ATATAAAT-AAAAT
83124223 AATATATA
1 -ATATATA
83124231 CTATTTTTAT
Statistics
Matches: 69, Mismatches: 2, Indels: 23
0.73 0.02 0.24
Matches are distributed among these distances:
13 8 0.12
14 15 0.22
15 19 0.28
16 12 0.17
17 13 0.19
18 2 0.03
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (15 bp):
ATATATAAATAAAAT
Found at i:83128544 original size:43 final size:43
Alignment explanation
Indices: 83128496--83128741 Score: 258
Period size: 43 Copynumber: 5.7 Consensus size: 43
83128486 ATTATCCTAA
* * *
83128496 CACATACAATGCATAATCAGATAAATTGAAGTATCTCTACTGG
1 CACATACAATGCATCATCAGATAAACTGAAGTATCTATACTGG
* * *
83128539 CACATACAATGCATAATCAGATAATCTGAAATATCTATACTGG
1 CACATACAATGCATCATCAGATAAACTGAAGTATCTATACTGG
** * * *
83128582 CACATACGGTGCATCATCGGATAAACTGAAATATCTATACTAG
1 CACATACAATGCATCATCAGATAAACTGAAGTATCTATACTGG
* ** *
83128625 CAAATACAATGCATCATCAGATAAACCAAAGTATCTATACTAG
1 CACATACAATGCATCATCAGATAAACTGAAGTATCTATACTGG
* * * **
83128668 CATATATAGTGCATCATTGGATAAACTGAAGTATCTATACTGG
1 CACATACAATGCATCATCAGATAAACTGAAGTATCTATACTGG
* * * ** *
83128711 AACATATAGTGCATCATTGGATAAGCTGAAG
1 CACATACAATGCATCATCAGATAAACTGAAG
83128742 AAAATAGACT
Statistics
Matches: 175, Mismatches: 28, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 175 1.00
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (43 bp):
CACATACAATGCATCATCAGATAAACTGAAGTATCTATACTGG
Found at i:83128649 original size:129 final size:129
Alignment explanation
Indices: 83128499--83128740 Score: 313
Period size: 129 Copynumber: 1.9 Consensus size: 129
83128489 ATCCTAACAC
*** * * *
83128499 ATACAATGCATAATCAGATAAATTGAAGTATCTCTACTGGCACATACAATGCATAATCAGATAAT
1 ATACAATGCATAATCAGATAAACCAAAGTATCTATACTAGCACATACAATGCATAATCAGATAAA
* *
83128564 CTGAAATATCTATACTGGCACATACGGTGCATCATCGGATAAACTGAAATATCTATACTAGCAA
66 CTGAAATATCTATACTGGAACATACAGTGCATCATCGGATAAACTGAAATATCTATACTAGCAA
* * * * * **
83128628 ATACAATGCATCATCAGATAAACCAAAGTATCTATACTAGCATATATAGTGCATCATTGGATAAA
1 ATACAATGCATAATCAGATAAACCAAAGTATCTATACTAGCACATACAATGCATAATCAGATAAA
* * * *
83128693 CTGAAGTATCTATACTGGAACATATAGTGCATCATTGGATAAGCTGAA
66 CTGAAATATCTATACTGGAACATACAGTGCATCATCGGATAAACTGAA
83128741 GAAAATAGAC
Statistics
Matches: 94, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
129 94 1.00
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (129 bp):
ATACAATGCATAATCAGATAAACCAAAGTATCTATACTAGCACATACAATGCATAATCAGATAAA
CTGAAATATCTATACTGGAACATACAGTGCATCATCGGATAAACTGAAATATCTATACTAGCAA
Found at i:83128734 original size:86 final size:86
Alignment explanation
Indices: 83128515--83128784 Score: 265
Period size: 86 Copynumber: 3.1 Consensus size: 86
83128505 TGCATAATCA
* * * * * *
83128515 GATAAATTGAAGTATCTCTACTGGCACATACAATGCATAATCAGATAATCTGAAA-TATCTATAC
1 GATAAACTGAAGTATCTATACTGGAACATACAATGCATCATCAGATAAAC-CAAAGTATCTATAC
* ** *
83128579 TGGCACATACGGTGCATCATCG
65 TAGCACATATAGTGCATCATTG
* *
83128601 GATAAACTGAAATATCTATACTAGCAA-ATACAATGCATCATCAGATAAACCAAAGTATCTATAC
1 GATAAACTGAAGTATCTATACT-GGAACATACAATGCATCATCAGATAAACCAAAGTATCTATAC
*
83128665 TAGCATATATAGTGCATCATTG
65 TAGCACATATAGTGCATCATTG
* * ** * ** * ** *
83128687 GATAAACTGAAGTATCTATACTGGAACATATAGTGCATCATTGGATAAGCTGAAGAAAATAGACT
1 GATAAACTGAAGTATCTATACTGGAACATACAATGCATCATCAGATAAACCAAAGTATCTATACT
* *
83128752 AGCACACATAGTGCACCATTG
66 AGCACATATAGTGCATCATTG
*
83128773 GATAAATTGAAG
1 GATAAACTGAAG
83128785 AAATTTTGTT
Statistics
Matches: 151, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
85 6 0.04
86 143 0.95
87 2 0.01
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (86 bp):
GATAAACTGAAGTATCTATACTGGAACATACAATGCATCATCAGATAAACCAAAGTATCTATACT
AGCACATATAGTGCATCATTG
Found at i:83128763 original size:43 final size:43
Alignment explanation
Indices: 83128663--83128787 Score: 151
Period size: 43 Copynumber: 2.9 Consensus size: 43
83128653 AAGTATCTAT
* * ** *
83128663 ACTAGCATATATAGTGCATCATTGGATAAACTGAAGTATCTAT
1 ACTAGCACATATAGTGCATCATTGGATAAACTGAAGAAAATAG
* * *
83128706 ACTGGAACATATAGTGCATCATTGGATAAGCTGAAGAAAATAG
1 ACTAGCACATATAGTGCATCATTGGATAAACTGAAGAAAATAG
* * *
83128749 ACTAGCACACATAGTGCACCATTGGATAAATTGAAGAAA
1 ACTAGCACATATAGTGCATCATTGGATAAACTGAAGAAA
83128788 TTTTGTTGGC
Statistics
Matches: 68, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 68 1.00
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.26
Consensus pattern (43 bp):
ACTAGCACATATAGTGCATCATTGGATAAACTGAAGAAAATAG
Found at i:83134356 original size:14 final size:13
Alignment explanation
Indices: 83134336--83134367 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
83134326 AATATTTAAC
83134336 TTGTTCTTAATTA
1 TTGTTCTTAATTA
83134349 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
83134363 TTGTT
1 TTGTT
83134368 TTGATATCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:83135961 original size:25 final size:25
Alignment explanation
Indices: 83135933--83135984 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
83135923 TTTATTTCTC
* *
83135933 ATTTTTATATTT-TTCTTTAATTTTA
1 ATTTTAATATTTCTT-TTTAATTATA
*
83135958 ATTTTAATCTTTCTTTTTAATTATA
1 ATTTTAATATTTCTTTTTAATTATA
83135983 AT
1 AT
83135985 GTTAGTTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 21 0.91
26 2 0.09
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (25 bp):
ATTTTAATATTTCTTTTTAATTATA
Found at i:83135968 original size:19 final size:19
Alignment explanation
Indices: 83135946--83135984 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
83135936 TTTATATTTT
*
83135946 TCTTTAATTTTAATTTTAA
1 TCTTTAATTTTAATTATAA
**
83135965 TCTTTCTTTTTAATTATAA
1 TCTTTAATTTTAATTATAA
83135984 T
1 T
83135985 GTTAGTTTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (19 bp):
TCTTTAATTTTAATTATAA
Found at i:83138351 original size:21 final size:23
Alignment explanation
Indices: 83138327--83138385 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
83138317 GTCCTTACAA
83138327 ATAGAAAATAACAAAG-TAT-TT
1 ATAGAAAATAACAAAGCTATATT
*
83138348 ATAGGAAAA-ACCTAAAGCTATATT
1 ATA-GAAAATAAC-AAAGCTATATT
83138372 -TAGAAAATAACAAA
1 ATAGAAAATAACAAA
83138386 CAACCTAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
21 5 0.16
22 17 0.55
23 7 0.23
24 2 0.06
ACGTcount: A:0.58, C:0.08, G:0.10, T:0.24
Consensus pattern (23 bp):
ATAGAAAATAACAAAGCTATATT
Found at i:83141202 original size:17 final size:17
Alignment explanation
Indices: 83141180--83141212 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
83141170 TTTTATTTAT
83141180 ATATTTTATTACATATC
1 ATATTTTATTACATATC
*
83141197 ATATTTTATTATATAT
1 ATATTTTATTACATAT
83141213 TATTCCTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (17 bp):
ATATTTTATTACATATC
Found at i:83141212 original size:12 final size:13
Alignment explanation
Indices: 83141152--83141277 Score: 60
Period size: 13 Copynumber: 8.6 Consensus size: 13
83141142 CTTATGATAG
83141152 TATTTATATTTCATTA
1 TATTT-TATTT-A-TA
83141168 TATTTTATTTATA
1 TATTTTATTTATA
83141181 TATTTTATTACATATCA
1 TATTTTATT---TAT-A
83141198 TATTTTA-TTATA
1 TATTTTATTTATA
**
83141210 TATTATTCCTTATAA
1 TATT-TTATTTAT-A
83141225 TATCTTCCT-TTTATTA
1 TAT-TT--TATTTA-TA
83141241 TATATTATATTATATA
1 TAT-TT-TATT-TATA
83141257 TATTTT-TTATATA
1 TATTTTATT-TATA
83141270 TATTTTAT
1 TATTTTAT
83141278 ATTACTTATC
Statistics
Matches: 92, Mismatches: 4, Indels: 30
0.73 0.03 0.24
Matches are distributed among these distances:
12 5 0.05
13 29 0.32
14 7 0.08
15 13 0.14
16 26 0.28
17 12 0.13
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (13 bp):
TATTTTATTTATA
Found at i:83153599 original size:44 final size:44
Alignment explanation
Indices: 83153551--83154180 Score: 843
Period size: 44 Copynumber: 14.4 Consensus size: 44
83153541 CGTTTACAAG
* * *
83153551 GAGCATATCGAAGATAGCAGATTTGGCGTCTCTGTATTATCAGA
1 GAGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGA
* * *
83153595 GAGCAGATCGAAGATAGCAGATTTGGCGTCCCTGTATTGTTAGA
1 GAGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGA
* *
83153639 GAGCAAATCGAAGATAGCCA-ATTTGGCGTCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAG-TAGATTTGGCGTCTCTGTATTGTCAGA
* *
83153683 GAGCAGATCGAAGATAGTAGATTTGGCGTCTCTATATTGTTAGA
1 GAGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGA
* * * * *
83153727 GAACAGATCAAATAAAGTAGATTTGGCGTCTCTTTATTGTCAGA
1 GAGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGA
* *
83153771 GAGCAGATCAAAGATAGTAGATTTGGCGTCTATGTATTGTCAGA
1 GAGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGA
** *
83153815 GAGCAGATCGAAGATAGCCGATTTGGCATCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGA
* * *
83153859 GAGCATATCAAAGATAGTAGATTTGGCGTCTCTGTATTGT-TGA
1 GAGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGA
* * * *
83153902 GAACAGATCAAAGATAGTAGATTTGGTGTCTTTGTATTGTCAGA
1 GAGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGA
* * * * *
83153946 GAGTAAATCAAAGATAGTAGATTTGTCGTCTCTGTATTGTCAAA
1 GAGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGA
** * *
83153990 GAGCAGATCGAAGATAGCCGATTTGGCATCTCTGTATTGTCAAA
1 GAGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGA
* *
83154034 GAGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTACTGTTAGA
1 GAGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGA
* * *
83154078 GAACAGATCAAAG-TAGTAGATTTGGCGTCTTTGTATTGTCAGA
1 GAGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGA
* *
83154121 GAGTAGATCAAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGA
83154165 GAGCAGATCGAAGATA
1 GAGCAGATCGAAGATA
83154181 TCAGTATGGC
Statistics
Matches: 514, Mismatches: 68, Indels: 8
0.87 0.12 0.01
Matches are distributed among these distances:
43 77 0.15
44 435 0.85
45 2 0.00
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (44 bp):
GAGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGA
Found at i:83153995 original size:175 final size:176
Alignment explanation
Indices: 83153561--83154180 Score: 994
Period size: 175 Copynumber: 3.5 Consensus size: 176
83153551 GAGCATATCG
* * * * * *
83153561 AAGATAGCAGATTTGGCGTCTCTGTATTATCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCC
1 AAGATAGTAGATTTGGCGTCTTTGTATTGTCAGAGAGCAGATCAAAGATAGTAGATTTGGCGTCT
* * * *
83153626 CTGTATTGTTAGAGAGCAAATCGAAGATAGCCAATTTGGCGTCTCTGTATTGTCAGAGAGCAGAT
66 CTGTATTGTCAGAGAGCAGATCGAAGATAGCCGATTTGGCATCTCTGTATTGTCAGAGAGCAGAT
*
83153691 CGAAGATAGTAGATTTGGCGTCTCTATATTGTTAGAGAACAGATCA
131 CGAAGATAGTAGATTTGGCGTCTCTGTATTGTTAGAGAACAGATCA
* *
83153737 AATAAAGTAGATTTGGCGTCTCTT-TATTGTCAGAGAGCAGATCAAAGATAGTAGATTTGGCGTC
1 AAGATAGTAGATTTGGCGTCT-TTGTATTGTCAGAGAGCAGATCAAAGATAGTAGATTTGGCGTC
* *
83153801 TATGTATTGTCAGAGAGCAGATCGAAGATAGCCGATTTGGCATCTCTGTATTGTCAGAGAGCATA
65 TCTGTATTGTCAGAGAGCAGATCGAAGATAGCCGATTTGGCATCTCTGTATTGTCAGAGAGCAGA
*
83153866 TCAAAGATAGTAGATTTGGCGTCTCTGTATTGTT-GAGAACAGATCA
130 TCGAAGATAGTAGATTTGGCGTCTCTGTATTGTTAGAGAACAGATCA
* * * *
83153912 AAGATAGTAGATTTGGTGTCTTTGTATTGTCAGAGAGTAAATCAAAGATAGTAGATTTGTCGTCT
1 AAGATAGTAGATTTGGCGTCTTTGTATTGTCAGAGAGCAGATCAAAGATAGTAGATTTGGCGTCT
* *
83153977 CTGTATTGTCAAAGAGCAGATCGAAGATAGCCGATTTGGCATCTCTGTATTGTCAAAGAGCAGAT
66 CTGTATTGTCAGAGAGCAGATCGAAGATAGCCGATTTGGCATCTCTGTATTGTCAGAGAGCAGAT
*
83154042 CGAAGATAGTAGATTTGGCGTCTCTGTACTGTTAGAGAACAGATCA
131 CGAAGATAGTAGATTTGGCGTCTCTGTATTGTTAGAGAACAGATCA
*
83154088 AAG-TAGTAGATTTGGCGTCTTTGTATTGTCAGAGAGTAGATCAAAGATAGTAGATTTGGCGTCT
1 AAGATAGTAGATTTGGCGTCTTTGTATTGTCAGAGAGCAGATCAAAGATAGTAGATTTGGCGTCT
83154152 CTGTATTGTCAGAGAGCAGATCGAAGATA
66 CTGTATTGTCAGAGAGCAGATCGAAGATA
83154181 TCAGTATGGC
Statistics
Matches: 409, Mismatches: 32, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
174 2 0.00
175 246 0.60
176 160 0.39
177 1 0.00
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (176 bp):
AAGATAGTAGATTTGGCGTCTTTGTATTGTCAGAGAGCAGATCAAAGATAGTAGATTTGGCGTCT
CTGTATTGTCAGAGAGCAGATCGAAGATAGCCGATTTGGCATCTCTGTATTGTCAGAGAGCAGAT
CGAAGATAGTAGATTTGGCGTCTCTGTATTGTTAGAGAACAGATCA
Found at i:83155948 original size:19 final size:20
Alignment explanation
Indices: 83155921--83155964 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
83155911 CCCCATTTTA
* *
83155921 ATTTATTTT-TCAATAAAAT
1 ATTTATTTTAACAAAAAAAT
*
83155940 ATTTCTTTTAACAAAAAAAT
1 ATTTATTTTAACAAAAAAAT
83155960 ATTTA
1 ATTTA
83155965 AAACCATAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (20 bp):
ATTTATTTTAACAAAAAAAT
Found at i:83158297 original size:513 final size:513
Alignment explanation
Indices: 83155864--83159507 Score: 5910
Period size: 513 Copynumber: 7.1 Consensus size: 513
83155854 ATTTTACTAT
* *
83155864 AATATTATATACCTATTTAGTTAATATTGTACCTTCTCTCAATTAAACCCCATTTTAATTTATTT
1 AATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATAAAACCCCATTTTAATTTATTT
* *
83155929 TTCAATAAAATATTTCTTTTAACAAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATA
66 TTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATA
* *
83155994 TTTTTA-CATTCCGAAATATTATTTACCGATTTTTAAATGAAATTAAGCTAACTAATTTTTTTTT
131 TTTTTATC-TTCTGGAATATTATTTACCGATTTTTAAATGAAATTAAGCTAACT-ATTTTTTTTT
*
83156058 AAAGAAATGACTAGTAAACCCGATTAACTCCTAGCTTTCACCCAGAACCCGATAAACTTACTCAA
194 AAAGAAATGACTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAA
* *
83156123 AACTATTAGACCTATTTTTAGGGCGTTACAAACACAACATACATTGGAAAATTTGCGATTACAAG
259 AACTAGTAGACCTATTTTTAGGGCGTTACAAACACAACATACTTTGGAAAATTTGCGATTACAAG
* * * **
83156188 TAGGTTTCGACAATTAGAATTGTAATCGAAAAGCTTCTATCAAAGATAAGCAGAATTTGGTGGAT
324 TAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGG-T
* *
83156253 -TGGAAAGGAAAAAGGAAAATATTGGGCGATACTCCCGTGGAAGAATTTGTCTCAGCCTAAAAGG
388 CTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGG
* *
83156317 ATGGGGGTATTAGTATTCATGATATTCGTGATATTTTT-TAAAAAATATTTTTATTTTCCAG
453 ATGGGGGTATTAGTATTCATGATATTCATGATATTTTTCT-AAAAATATTTTTATTTTCCGG
83156378 AATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATAAAACCCCATTTTAATTTATTT
1 AATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATAAAACCCCATTTTAATTTATTT
*
83156443 TTCAATAAAATATTTATTTTAACCAAAAAA-AATTAAAACCATAAAATTGATTTCTCTAAAAATA
66 TTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATA
* * ** *
83156507 TTTTTATCTTCTTGAATATTATTAACCGAAGTTTAATTGAAATTAAGCTAACTA-TTTTTTTTAA
131 TTTTTATCTTCTGGAATATTATTTACCGATTTTTAAATGAAATTAAGCTAACTATTTTTTTTTAA
*
83156571 AGAAATGACTAGTAAACTCGATTAACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAA
196 AGAAATGACTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAA
* * * *
83156636 CTAGTAGACCTATTTTTAGGGCATTACAAACACAACATACTTTAGAAAATTTGTGATTACAATTA
261 CTAGTAGACCTATTTTTAGGGCGTTACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTA
* * *
83156701 GTTTTGGACAATTAGGATTGTGATAGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGCCTG
326 GGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTG
83156766 GAAAGGAAAGAGGAAAATATTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATG
391 GAAAGGAAAGAGGAAAATATTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATG
* * *
83156831 GGGGTATTAGTATTCATGATATTCGTGATATTTTTCTAAAAATACTTTTATTTTCTGG
456 GGGGTATTAGTATTCATGATATTCATGATATTTTTCTAAAAATATTTTTATTTTCCGG
* *
83156889 AATATTATATACTTATTTCGTTAATATTGTAACTTCTCTCAATAAAACCCCATTTTAATTTATTT
1 AATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATAAAACCCCATTTTAATTTATTT
83156954 TTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATA
66 TTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATA
* *
83157019 TTTTTA-CATTCCT-GAATATTATTTACCGATTTTTCAATGAAATTAAGCTAACGAATTTTTTTT
131 TTTTTATC-TT-CTGGAATATTATTTACCGATTTTTAAATGAAATTAAGCTAAC-TATTTTTTTT
* *
83157082 TGAAGAAATGACTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACACGATAAACTTACTCA
193 TAAAGAAATGACTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCA
** *
83157147 AAACTAGTAGACCTATTTTTAGGGAATTACAAACACAACATACTTTGGAAAATTTGCGATTACAT
258 AAACTAGTAGACCTATTTTTAGGGCGTTACAAACACAACATACTTTGGAAAATTTGCGATTACAA
* **
83157212 GTAGGTTTGGACAATTAGAATTGTGATCGAAAAGCTTCTATCAAAGATAAGCAGAATTTGGTGGT
323 GTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGT
* * * * *
83157277 TTGGAAAGGAAAGAGGAAAATATTGGGCGATATTCCTGTAGAAGAATTTGTGTTAGCCTAAAAGG
388 CTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGG
* * **
83157342 ATGGGGGTATTAGTATTCATGATATTCTTGAAATTTTTCTAAAAATATTTTTATTTTCTAG
453 ATGGGGGTATTAGTATTCATGATATTCATGATATTTTTCTAAAAATATTTTTATTTTCCGG
* *
83157403 AATATTATATACCTATTTCGTTAATATTGTAACTTCTCTCAATTAAACCCCATTTT-A---ATTT
1 AATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATAAAACCCCATTTTAATTTATTT
83157464 TTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATA
66 TTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATA
*
83157529 TTTTTAT-TTTTCGGAATATTATTTACCGATTTTTAAATGAAATTAAGCTAACTA-TTTTTTTTA
131 TTTTTATCTTCT-GGAATATTATTTACCGATTTTTAAATGAAATTAAGCTAACTATTTTTTTTTA
* *
83157592 AAGAAATGAGTAGTAAACCCGATTAACTCTTAGCTTTCACCCGGAACCCGATAAACTTACTCAAA
195 AAGAAATGACTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAA
* * *
83157657 ACTAGTAGACCTATTTTTAGGACATTACAAACACAACATACTTTGGAAAATTTGCGATTACATGT
260 ACTAGTAGACCTATTTTTAGGGCGTTACAAACACAACATACTTTGGAAAATTTGCGATTACAAGT
* * *
83157722 AGGTTTGGACAATTAGGATTGTGATCGAGAAGCTTTTATCAAAGATAAGCAGAAATTGGTGGTCT
325 AGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCT
83157787 GGAAAGGAAAGAGGAAAATATTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGAT
390 GGAAAGGAAAGAGGAAAATATTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGAT
* * *
83157852 GGGGGTATTAGTATTCATGATATTCGTGATATTTTTTTAAAAATATTTTTATTTTCCAG
455 GGGGGTATTAGTATTCATGATATTCATGATATTTTTCTAAAAATATTTTTATTTTCCGG
* *
83157911 AATATTATATACCTATTCAGTTAATATTGTAACTTCTCTCAATAAAACCCCATTTTAATTTCTTT
1 AATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATAAAACCCCATTTTAATTTATTT
83157976 TTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATA
66 TTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATA
** * *
83158041 TTTTTATCTTCTGGAATATT-TTTAACCGAAGTTTAATTGAAATTAAGCTAACTATTTTTTTTTG
131 TTTTTATCTTCTGGAATATTATTT-ACCGATTTTTAAATGAAATTAAGCTAACTATTTTTTTTTA
*
83158105 AAGAAATGACTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACCCGATAAACTTACCCAAA
195 AAGAAATGACTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAA
* *
83158170 ACTAGTAGACCTATTTTTTGGGCGTTACAAACACAACATACTTTGGAAAATTTACGATTACAAGT
260 ACTAGTAGACCTATTTTTAGGGCGTTACAAACACAACATACTTTGGAAAATTTGCGATTACAAGT
* * *
83158235 CGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAAAATATGGTGGTCT
325 AGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCT
* * * *
83158300 AGAAAGGAAAGAGGAAAATATTGGGTGATACTCCCGTGCAAGAATTTCTGTCAGCCTAAAA-G--
390 GGAAAGGAAAGAGGAAAATATTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGAT
*
83158362 GGGGATATTAGTATTCATGATATTCATGATATTTTTCTAAAAATATTTTTATTTTCCGG
455 GGGGGTATTAGTATTCATGATATTCATGATATTTTTCTAAAAATATTTTTATTTTCCGG
* *
83158421 AATATTATATACCTATTTAGTTAATATTGTAACTTCTCTAAATTAAACCCCATTTTAATTTATTT
1 AATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATAAAACCCCATTTTAATTTATTT
*
83158486 TTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTTATTTCTCTAAAAATA
66 TTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATA
* * * *
83158551 TTTTTATTTTCTTGAATATTATTTACCGACTTTTAAATGAAATTAAGCTAACTAATTTTTTTT--
131 TTTTTATCTTCTGGAATATTATTTACCGATTTTTAAATGAAATTAAGCTAACTATTTTTTTTTAA
* *
83158614 --AAATAACAAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAA
196 AGAAATGACTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAA
83158677 CTAGTAGACCTATTTTTAGGGCGTTACAAACACAACATACTTT-GAAAATTTTGCGATTACAAGT
261 CTAGTAGACCTATTTTTAGGGCGTTACAAACACAACATACTTTGGAAAA-TTTGCGATTACAAGT
*
83158741 AGGTTTGGACAATTACGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCT
325 AGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCT
*
83158806 GGAAAGGAAAGAGGAAAATATTGGGCGATACTCCCGAGGAAGAATTTGTGTCAGCCTAAAAGGAT
390 GGAAAGGAAAGAGGAAAATATTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGAT
* *
83158871 TGGGGTATTAGTATTCATGATATTCATGATATTTTTCTAAAAATATTTTTATTTTTCGG
455 GGGGGTATTAGTATTCATGATATTCATGATATTTTTCTAAAAATATTTTTATTTTCCGG
* * * *
83158930 AATATTATATACGTATTTAGTTAATATTGTAACTTCTCTCACTGAAACCCCATTTTAAGTTATTT
1 AATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATAAAACCCCATTTTAATTTATTT
* *
83158995 TTCAATAAAATATTTAGTTTAACCAAAAAATATTTAAAACCATAATATTGATTTCTCTAAAAATA
66 TTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATA
* * * * *
83159060 TTTTTATTTTCCGGAATATTATTTACCGGTTTTTAAATGAAAATAAGCTAACTAATTTTTTTTAA
131 TTTTTATCTTCTGGAATATTATTTACCGATTTTTAAATGAAATTAAGCTAACTATTTTTTTTTAA
** * * *
83159125 AGAAATGTGTAGTAAACCCGATTAACTCCTAGCTCTCACCCAGAACCCGATAAATTTACTCAAAA
196 AGAAATGACTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAA
*
83159190 CTAGTAGACCTATTTTTAGGGCGTTACAAACACAACAAACTTTGGAAAATTTGCGATTACAAGTA
261 CTAGTAGACCTATTTTTAGGGCGTTACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTA
*
83159255 GGTTTGGACAATTAGGATTGTGAACGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTG
326 GGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTG
* *
83159320 GAAATGAAAGAGGAAAATATTGGGCGATACTCCCGTGGAAGAATTTGTGTCTGCCTAAAAGGATG
391 GAAAGGAAAGAGGAAAATATTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATG
* * * *
83159385 GGGGTATTATTATTCAAGATATTCATGATATTTTTCTATAAATATTTTTATTTTCTGG
456 GGGGTATTAGTATTCATGATATTCATGATATTTTTCTAAAAATATTTTTATTTTCCGG
* *
83159443 AATATTATATACGTATTTAGTTAATATTGTAACTTCTCTCAATGAAACCCCATTTTAATTTATTT
1 AATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATAAAACCCCATTTTAATTTATTT
83159508 GTGACCCACG
Statistics
Matches: 2920, Mismatches: 182, Indels: 57
0.92 0.06 0.02
Matches are distributed among these distances:
505 5 0.00
506 233 0.08
507 1 0.00
508 363 0.12
509 240 0.08
510 346 0.12
511 404 0.14
512 188 0.06
513 684 0.23
514 456 0.16
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (513 bp):
AATATTATATACCTATTTAGTTAATATTGTAACTTCTCTCAATAAAACCCCATTTTAATTTATTT
TTCAATAAAATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATA
TTTTTATCTTCTGGAATATTATTTACCGATTTTTAAATGAAATTAAGCTAACTATTTTTTTTTAA
AGAAATGACTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAA
CTAGTAGACCTATTTTTAGGGCGTTACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTA
GGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTG
GAAAGGAAAGAGGAAAATATTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATG
GGGGTATTAGTATTCATGATATTCATGATATTTTTCTAAAAATATTTTTATTTTCCGG
Found at i:83160430 original size:19 final size:20
Alignment explanation
Indices: 83160406--83160449 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
83160396 CCCCATTTCA
83160406 ATTTATTTT-T-CAATAAAAT
1 ATTTATTTTATCCAA-AAAAT
83160425 ATTTATTTTATCCAAAAAAT
1 ATTTATTTTATCCAAAAAAT
83160445 ATTTA
1 ATTTA
83160450 AAACCATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.39
20 11 0.48
21 3 0.13
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (20 bp):
ATTTATTTTATCCAAAAAAT
Done.