Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 257 of 290
Found at i:83161235 original size:513 final size:513
Alignment explanation
Indices: 83159547--83170786 Score: 17555
Period size: 512 Copynumber: 22.2 Consensus size: 513
83159537 AATCTCATGT
* * *
83159547 ACTCCCAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAAACCTATTTTTAGGGCAT
1 ACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
*
83159612 TACAAACACAACATACTTTGGAAAATTTGCGATTACATGTAGGTTTGGACAATTAGGATTGTGAT
66 TACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
*
83159677 CGAGGAGCTTCTATCATAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGG
131 CGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGG
* *
83159742 CGATACTCCCGTGGAAGAAATTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCTTGATATTC
196 CGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTC
* * * *
83159807 GTGATATTTTTCTATAAATATTTTTATTTTCCGGAATATTATATACGTATTTAGTTAATATTATA
261 GTGATATTTTTCTAAAAATATTTTTATTTTTCGGAATATTATATACCTATTTAGTTAATATTGTA
* *
83159872 ACTTCTCTTAATTAAACCCCATTTTAATTTAATTTTCAATAAAATATTTATTTTAACCAAAAAAT
326 ACTTCTCTCAATTAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAAT
* *
83159937 ATTTAAAACCATAAAATTGATTTCGCTAAAAATATTTTTATTTTCCAGAATATTATTTATCGGTT
391 ATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGTT
*
83160002 TTTAAATGAAATTAAGCTAACT-ATTTTTTTT----AAATCACTAGTAAACCCGATTA
456 TTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGACTAGTAAACCCGATTA
* * *
83160055 ACTCCTAGCTTTCACCCGTAACCCGATAAACTTACTCAAAACTAGTTGACCTATTTTTCGGGCGT
1 ACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
* *
83160120 CACAAAGACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
66 TACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
* *
83160185 CGAGGAGCTTCTATCAAAGATAAGCAAAATTTGGTGGTCTGGAAAGGAAAAAGGAAAATATTGGG
131 CGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGG
* * * *
83160250 CGATACTCCCGTGGAAGAAATTGTGCCAGCCTAAAAGGATGGTGATATTAGTATTCATGATATTC
196 CGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTC
* *
83160315 ATGATATTTTTCTAAAAATATTTTTA-TTTTCAGGAATATTATATACCTATTTAGTTAGTATTGT
261 GTGATATTTTTCTAAAAATATTTTTATTTTTC-GGAATATTATATACCTATTTAGTTAATATTGT
* *
83160379 AACTTCTCTCAATTAAACCCCATTTCAATTTATTTTTCAATAAAATATTTATTTTATCCAAAAAA
325 AACTTCTCTCAATTAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAA
**
83160444 TATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTTTGGAATATTATTT-TCCGG
390 TATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTAT-CGG
* * * *
83160508 GTATTAAATGAAATTAAGCTAACAAATTTTTTTTTAAAGAAATGAGC-AGTAAACCCGATTT
454 TTTTTAAATGAAATTAAGCTAACTAA-TTTTTTTTAAAGAAATGA-CTAGTAAACCCGATTA
* * * * *
83160569 ACTCCTAGCTTTCACCCGGGACCAGATAAATTTACTTAAAACTAGTAGACCTATTTTTAGTGCGT
1 ACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
*
83160634 TACAAACACAACATACTTTGGAAAATTTGTGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
66 TACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
*
83160699 CGAGGAGCTTCTATCATAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGG
131 CGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGG
83160764 CGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTC
196 CGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTC
* * *
83160829 GTGATAATTTTCTAAAAATATTTTTATTTTTTGGAATATTATATACGTATTTTA-TTAATATTGT
261 GTGATATTTTTCTAAAAATATTTTTATTTTTCGGAATATTATATACCTA-TTTAGTTAATATTGT
* * * *
83160893 AACTTCTATCAATTAAACCCAATTTTAATTTATTTTTCAAAAAAATATTTATTCTAA-CAAAAAA
325 AACTTCTCTCAATTAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAA
* * *
83160957 TATTTAAAATCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGAAATATTGTTTATCGGT
390 TATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGT
* * * *
83161022 TTTTAAATGAAGTTAAGCTAACTAATTTTTTTTTAAAGAAATAAGTAGAAAACCCGATTA
455 TTTTAAATGAAATTAAGCTAACTAA-TTTTTTTTAAAGAAATGACTAGTAAACCCGATTA
* *
83161082 AGTCCTAGCTTTCACCCGGAACCCGATAAATTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
1 ACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
* *
83161147 TACAAACACAACATACTTTTGAAAATTTGCGATTACAAGTAGGTTTGGAAAATTAGGATTGTGAT
66 TACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
* * * * *
83161212 CGAGAAGCTTTTATCAAAGATAAGTAGAATTTGGTGGTCTGGAAAGGGAAGAGAAAAATATTGGG
131 CGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGG
*
83161277 CGATACTCCCGTAGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTC
196 CGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTC
* * *
83161342 GTGATATTTTTATATAAATATTTTTATTTTTCGGAATATTATATACGTATTTAGTTAATATTGTA
261 GTGATATTTTTCTAAAAATATTTTTATTTTTCGGAATATTATATACCTATTTAGTTAATATTGTA
* *
83161407 ACTTCTCTTAATTAAACCCCATTTTAATTTATTTTTTAATAAAATATTTATTTTAACCAAAAAAT
326 ACTTCTCTCAATTAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAAT
* **
83161472 ATTTAAAACCATAAAAATT-ATTTCGCTAAAAATATTTTTATTTTCAAGAATATTATTTATCGGT
391 ATTTAAAACCAT-AAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGT
*
83161536 TTTTAAATGAAATTAAGCTAACT-ATTTTTTTT----AAATCACTAGTAAACCCGATTA
455 TTTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGACTAGTAAACCCGATTA
* * *
83161590 ACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTTGACCTAATTTTCGGGCGT
1 ACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
* * *
83161655 TACAAAGAGAACAAACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
66 TACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
* * * * *
83161720 CGAGGAGCTTCTATCAAAGGTAAGCAGAATTTGGTGCTCTGGAAAGGAATGAAGAAAATATTAGG
131 CGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGG
* * *
83161785 CGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATAGGGGTATTAGTATTCATGGTAGTC
196 CGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTC
*
83161850 GTGATATTTTTCTAAAAATATTTTTATTTTTTGGAATATTATATACCTATTTAGTTAATATTGTA
261 GTGATATTTTTCTAAAAATATTTTTATTTTTCGGAATATTATATACCTATTTAGTTAATATTGTA
83161915 ACTTCTCTCAATTAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAAT
326 ACTTCTCTCAATTAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAAT
* * * * **
83161980 ATTTTAAACCGTAAAATTGATTTCTCTAAAAATATTTTTATTTTCTGGAATATTATTTACCGACT
391 ATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGTT
* * *
83162045 TTTAAATGAAATTAAGCTAACTAATTTTTTTT-TATAAATAACTAGTAAACCCGATTA
456 TTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGACTAGTAAACCCGATTA
* *
83162102 ACTCTTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGAGCGT
1 ACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
* * *
83162167 TACAAACACAATATACTTTGGAAAATTTGCGATTACAAGTAGATTTGGACAATTAGAATTGTGAT
66 TACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
* * *
83162232 CGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTTGAAAGGAAAGAAGAAAATATTAGG
131 CGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGG
* *
83162297 CGATACTCCCGAGGAAGAATTTGTGTCAGCCTAAAAGGATAGGGGTATTAGTATTCATGATATTC
196 CGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTC
* * *
83162362 TTGATATTTTTCTAAAAATATTTTTATTTTTTGGAATATTATATACGTATTTAGTTAATATTGTA
261 GTGATATTTTTCTAAAAATATTTTTATTTTTCGGAATATTATATACCTATTTAGTTAATATTGTA
* * *
83162427 ACTTCTCTCAATGAAACCCCTTTTTAATTTA-TTTTCACTAAAATATTTATTTTAACCAAAAAAT
326 ACTTCTCTCAATTAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAAT
* *
83162491 ATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTGTTTATCAGTT
391 ATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGTT
* * *
83162556 TTTATATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGAGTAGAAAACCCGATTA
456 TTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGACTAGTAAACCCGATTA
* * *
83162614 AGTCCTAGCTTTCACCCGGAACCCGATAAATTTACTTAAAACTAGTAGACCTATTTTTAGGGCGT
1 ACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
* * * *
83162679 TACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTTGGACTGTAAC
66 TACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
* * *
83162744 CCAGGAGCTTCTATCAAAGATAAGCAGAATTTGATGGTCTGGAAAGGAAAGAGGAAAATATTAGG
131 CGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGG
* * *
83162809 CAATACTCCCGTGGAAGAATTTGTGTTAGACTAAAAGGATGGGGGTATTAGTATTCATGATATTC
196 CGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTC
* * *
83162874 GTGATATTTTTCTATAAATATTTTTATTTTCCGGAATATTATATACGTATTTAGTTAATATTGTA
261 GTGATATTTTTCTAAAAATATTTTTATTTTTCGGAATATTATATACCTATTTAGTTAATATTGTA
* *
83162939 ACTTCTCTTAATTAAACCCCATTTTAATTTATTTTTTAATAAAATATTTATTTTAACCAAAAAAT
326 ACTTCTCTCAATTAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAAT
* *
83163004 ATTTAAAACCATAAAATTGATTTCGCTAAAAATATTTTTATTTTCCAGAATATTATTTATCGGTT
391 ATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGTT
* * *
83163069 TTTAAATGAAATTAAGATAACT-A-TTTTTTT----AAATCACTGGTAAACCCGATTA
456 TTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGACTAGTAAACCCGATTA
* * * *
83163121 ACTCCTAGCTTTCACCCGTAACCCGATAAACTTACTCAAAACTAGTTGACCTATTTTTCGGGCAT
1 ACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
* * * * *
83163186 TACAAAGACAACATTCTTTAGAATATTTGTGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
66 TACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
* * *
83163251 AGAGGAGCTTCTATCAAAGGTAAGTAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGG
131 CGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGG
* * * * * *
83163316 CGATACTCCCGTGGAAGAAATTGTGCCAGCCTAAAAGGATGGTGATATTAGTATTCATGGTAGTC
196 CGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTC
* * * *
83163381 GTGATATTTTTCTAAAAATATTTTTATTTTCCGAAATGTTATATACCTATATAGTTAATATTGTA
261 GTGATATTTTTCTAAAAATATTTTTATTTTTCGGAATATTATATACCTATTTAGTTAATATTGTA
* * * * *
83163446 ACTTCTCTTAATGAAACCACATTTTAATTTATTTTACAAGAAAATATTTATTTTAACCAAAAAAT
326 ACTTCTCTCAATTAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAAT
* * * *
83163511 ATTTAAAACCATAAAATTGCTTTCTCTAAAAATATTTTTATTTTTCGGAATATTATTTACCGATT
391 ATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGTT
* * * *
83163576 TTTAAATGAAATTAAGGTAACGAATTTTTTTTAAAAGGAAATGACTGGT-AACCCGATAA
456 TTTAAATGAAATTAAGCTAACTAATTTTTTTT-AAA-GAAATGACTAGTAAACCCGATTA
*
83163635 ACTCCTAGCTTTCACTCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
1 ACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
* * *
83163700 TACAAGCACAATATACTTTGGAAATTTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
66 TACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
* *
83163765 CGAGAAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAAAGGAAAATATTGGG
131 CGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGG
* *
83163830 CGATACTCCCGTGGAAGAAATTGTGTTAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTC
196 CGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTC
83163895 GTGATATTTTTCTAAAAATATTTTTA-TTTTCTGGAATATTATATACCTATTTAGTTAATATTGT
261 GTGATATTTTTCTAAAAATATTTTTATTTTTC-GGAATATTATATACCTATTTAGTTAATATTGT
* *
83163959 AACTTCTCTCAATTAAACCCCATTTCAATTTATTTTTCAATAAAATATTTATTTTATCCAAAAAA
325 AACTTCTCTCAATTAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAA
* *
83164024 TATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATATTTTCGGAATATTGTTTATCGG
390 TATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTAT-TTTCCGGAATATTATTTATCGG
* * * * *
83164089 -TTTTAAATGAAGTTAAGCTAACTAAGTTTTTTTTTAAAGAAATCAGTAGAAAACCAGATTA
454 TTTTTAAATGAAATTAAGCTAACTAA--TTTTTTTTAAAGAAATGACTAGTAAACCCGATTA
* * *
83164150 AGTCCTAGCTTTCACCCGGAACCCGATAAATTTACTTAAAACTAGTAGACCTATTTTTAGGGCGT
1 ACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
*
83164215 TTCAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
66 TACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
* *
83164280 CGAGGAGCTTCTAT-AATAGATAAGCAGAATTTGGTGGTCTGGAAAGTAAAGAGGAAAATATTAG
131 CGAGGAGCTTCTATCAA-AGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGG
*
83164344 GCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAACGGATGGGGGTATTAGTATTCATGATATT
195 GCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATT
* * *
83164409 CGTGATAATTTTCTAAAAATATTTTTATTTTTTGGAATATTATATACGTATTTAGTTAATATTGT
260 CGTGATATTTTTCTAAAAATATTTTTATTTTTCGGAATATTATATACCTATTTAGTTAATATTGT
83164474 AACTTCTCTCAATTAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAA
325 AACTTCTCTCAATTAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAA
*
83164539 TATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTGTTTATCGGT
390 TATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGT
* * ** **
83164604 TTTTAAATGAAGTTAAGCTAACTAATTTTTTTTAAAGAAATGATTTCTCTACCCGATTA
455 TTTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGACTAGTAAACCCGATTA
* *
83164663 AGTCCTAGCTTTCACCCGGAACCCGATAAATTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
1 ACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
*
83164728 TACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGAAAATTAGGATTGTGAT
66 TACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
* * *
83164793 CGAGAAGCTTCTATCAAAGGTAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTAGG
131 CGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGG
* * *
83164858 CAATACTCCCGTGGAAGAATTTGTGTTAGACTAAAAGGAT-GGGGTATTAGTATTCATGATATTC
196 CGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTC
* *
83164922 GTGATATTTTTCTAAAAATATTTTTATTTTCCGGAATATTATATACGTATTTAGTTAATATTGTA
261 GTGATATTTTTCTAAAAATATTTTTATTTTTCGGAATATTATATACCTATTTAGTTAATATTGTA
* * *
83164987 ACTTCTCTAAATGAAACCCCATTTTAATTTATTTTTCACTAAAATATTTATTTTAACCAAAAAAT
326 ACTTCTCTCAATTAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAAT
* **
83165052 ATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTGTTTATCAATT
391 ATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGTT
* * * *
83165117 TTTATATGAAATTAAGCTAACTAA-TTTTTTTACAGAAATGAGTAGAAAACCCGATTA
456 TTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGACTAGTAAACCCGATTA
* *
83165174 AGTCCTAGCTTTCACCCGGAACCCGATAAATTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
1 ACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
* * * *
83165239 TACAAACATAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTTGGACTGTGAC
66 TACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
* * *
83165304 CCAGGAGCTTCTATCAAAGATAAGCAGAATTTGATGGTCTGGAAAGGAAAGAGGAAAATATTAGG
131 CGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGG
* * * *
83165369 CAATACTCCCGTGGAAGAATTTGTGTTAGACTAAAAGGATGGGGGTATTAGTATTCTTGATATTC
196 CGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTC
* * *
83165434 GTGATATTTTTCTATAAATATTTTTATTTTCCGGAATATTATATACGTATTTAGTTAATATTGTA
261 GTGATATTTTTCTAAAAATATTTTTATTTTTCGGAATATTATATACCTATTTAGTTAATATTGTA
*
83165499 ACTTCTCTTAATTAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAAT
326 ACTTCTCTCAATTAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAAT
* *
83165564 ATTTAAAACCATAAAATTGATTTCCCTAAAAATATTTTTATTTTCCAGAATATTATTTATCGGTT
391 ATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGTT
*
83165629 TTTAAATGAAATTAAGCTAACT-A-TTTTTTT----AAATCACTAGTAAACCCGATTA
456 TTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGACTAGTAAACCCGATTA
* * *
83165681 CCTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTTGACCTATTTTTCGGGCGT
1 ACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
* * * *
83165746 TACAAAGACAACAAACTTTGGAAAATTTGTGATTACAAATAGGTTTGGACAATTAGGATTGTGAT
66 TACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
* * ** *
83165811 CGAGGAGCTTCTATCAAAGGTAAGCAGAATTTGGTGCTCTGGAAAGGAAAGAATAAAATATTAGG
131 CGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGG
* *
83165876 CGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATAGGGGTATTAGTATTCATGGTATTC
196 CGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTC
*
83165941 GTGATATTTTTCTAAAAATATTTTTATTTTTTGGAATATTATATACCTATTTAGTTAATATTGTA
261 GTGATATTTTTCTAAAAATATTTTTATTTTTCGGAATATTATATACCTATTTAGTTAATATTGTA
*
83166006 ACTTCTCTCAATTAAACCCCATTTTAATTTATTTTTCAAAAAAATATTTATTTTAACCAAAAAAT
326 ACTTCTCTCAATTAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAAT
*
83166071 ATTTAAAATCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCC-GAATATTATTTATC-GTT
391 ATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGTT
* * *
83166134 TTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATAAGTAGAAAACCCGATTA
456 TTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGACTAGTAAACCCGATTA
*
83166192 AGTCCTAGCTTTCACCCGGAACCCGATAAA-TTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
1 ACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
83166256 TACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
66 TACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
*
83166321 CGA-GAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGG-AAGAGAAAAATATTGGG
131 CGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGG
83166384 CGATACTCCCGT-GAAGAATTTGTGTCAGCCTAAAAGGAT-GGGGTATTAGTATTCATGATATTC
196 CGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTC
* *
83166447 GTGATATTTTTAT-AAAATATTTTTATTTTTCGGAATATTATATACGTATTTAGTTAATATTGTA
261 GTGATATTTTTCTAAAAATATTTTTATTTTTCGGAATATTATATACCTATTTAGTTAATATTGTA
* *
83166511 ACTTCTCTTAATTGAAACCCCATTTTTATTT-TTTTT-AA-AAAATATTTATTTTAACCAAAAAA
326 ACTTCTCTCAATT-AAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAA
* *
83166573 TATTTAAAACCATAAAA-T--TTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTACCGAT
390 TATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGT
83166635 TTTTAAATGAAATTAAG-TAACTAA-TTTTTTT-AA-AAATGACTAGT-AACCCGA-TA
455 TTTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGACTAGTAAACCCGATTA
83166688 ACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
1 ACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
* * * *
83166753 TACAAATATAACATACTTTGGAAAATTTGGGATTACAAGTAGGGTTGGACAATTAGGATTGTGAT
66 TACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
*
83166818 CGAGGAGCTTCTATCAAAG-TAAGCAGAATTTGGTGGTCTGGAAAGGAAAGA--AGAATATTGGG
131 CGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGG
83166880 CGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATG-TATTC
196 CGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTC
83166944 GTGATATTTTTCTAAAAATATTTTTATTTTT-GGAATATTATATACCTATTTAGTTAATATTGTA
261 GTGATATTTTTCTAAAAATATTTTTATTTTTCGGAATATTATATACCTATTTAGTTAATATTGTA
83167008 ACTTCTCTCAATTAAA-CCCA-TTTAATTTATTTTTCAATAAAATATTTATTTTAACC-AAAAAT
326 ACTTCTCTCAATTAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAAT
* * * *
83167070 ATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTTCGGAAAATTATTTACCGATT
391 ATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGTT
83167135 TTTAAATGAAATTAAGCTAACT-ATTTTTTTT----AAAT-ACTAGTAAACCCGATTA
456 TTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGACTAGTAAACCCGATTA
83167187 ACTCCTAGC-TTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
1 ACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
83167251 TAC-AACACAACATACTTTGGAAAATTTGCGATTACAAGTA-GTTTGGACAATTAGGATTGTGAT
66 TACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
83167314 CGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCT-GAAAGG-AAGAAGG-AAATATTGG
131 CGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAG-AGGAAAATATTGG
83167376 GCGATACTCCCG-GGAAGAATTTGTGTCAGCCTAAAAGGA--GGGGTATTAGTATTCATGATATT
195 GCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATT
83167438 CGTGATA-TTTTCT-AAAATATTTTTATTTTT-GGAATATTATATACCTATTTAGTTAATATTGT
260 CGTGATATTTTTCTAAAAATATTTTTATTTTTCGGAATATTATATACCTATTTAGTTAATATTGT
* *
83167500 AACTTCT-TCAATGAAA-CCCATTTTAATTTATTTTTCACTAAAATATTTATTTTAACC-AAAAA
325 AACTTCTCTCAATTAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAA
83167562 TATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATC-GT
390 TATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGT
* *
83167626 TTTTAAATGAAATTAAGCTAAC-----TTTTTTAAAGAAAT-AGTAGAAAACCCGATTA
455 TTTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGACTAGTAAACCCGATTA
83167679 ACTCCTAGCTTTCACCCGGAACCCGATAAACTTACT-AAAACTAGTAGACCTATTTTTAGGGCGT
1 ACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
*
83167743 TAC-AAGACAAC-TACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
66 TACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
83167806 C-AGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGG-AAGAGGAAAATATTGGG
131 CGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGG
83167869 CGATACTCCCGTGGAAGAA-TTGTGTCAGCCTAAAAGGAT-GGGGTATTAGTATTCATGATATTC
196 CGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTC
*
83167932 GTGATATTTTTCT-AAAATA-TTTTA-TTTTCCGAATATTATATACCTATTTAGTTAATATTGTA
261 GTGATATTTTTCTAAAAATATTTTTATTTTTCGGAATATTATATACCTATTTAGTTAATATTGTA
*
83167994 ACTTCTCTTAATTAAACCCCATTTTAATTT-TATTTTCAATAAAATATTTATTTTAACC-AAAAA
326 ACTTCTCTCAATTAAACCCCATTTTAATTTAT-TTTTCAATAAAATATTTATTTTAACCAAAAAA
*
83168057 TATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCAGAATATTATTTATC-GT
390 TATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGT
* *
83168121 TTTTAAATGAAATTAAGATAACT-A-TTTTTTT----AAATCACTAGTAAACCCGATTA
455 TTTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGACTAGTAAACCCGATTA
*
83168174 ACTCCTAGCTTTCACCCGTAACCCGATAAACTTACTCAAAACT--T-GACCT-TTTTTAGGGCGT
1 ACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
* *
83168235 TACAAAGACAACATACTTTGGAAAATTTGTGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
66 TACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
* *
83168300 CGAGGAGCTTCTATCAAAGGTAAGCAGAATTTGGTGGTCTGGAAAGG-AAGAAGAAAATATTGGG
131 CGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGG
83168364 CGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATG-TATTC
196 CGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTC
83168428 GTGATATTTTTCTAAAAATATTTTTA-TTTTC-GAATATTATATACCTATTTAGTTAATATTGTA
261 GTGATATTTTTCTAAAAATATTTTTATTTTTCGGAATATTATATACCTATTTAGTTAATATTGTA
*
83168491 ACTTCTCT-AATGAAACCCCA-TTTAATTTA--TTTCAA-AAAATATTTATTTTAACCAAAAAAT
326 ACTTCTCTCAATTAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAAT
* *
83168551 ATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTA-TTTCCGGAATATTATTTACCGATT
391 ATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGTT
* *
83168615 TTTAAATGAAATTAAG-TAACGAA-TTTTTTT-AA-AAATGACTGGTAAACCCGA-TA
456 TTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGACTAGTAAACCCGATTA
83168668 ACTCCTAGCTTTCA-CC-GAACCCGATAAACTTACTCAAAACTAGTAGACCTA-TTTTAGGGCGT
1 ACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
*
83168730 TAC--GCACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
66 TACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
83168793 CGA--AGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAA-AGGAAAATATTGGG
131 CGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGG
*
83168855 CGATACTCCCGT-GAAGAAATTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTC
196 CGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTC
*
83168919 GTGATATTTTTCTAAAAATA-TTTTA-TTTTCGAAATATTATATACCTATTTAGTTAATATTGTA
261 GTGATATTTTTCTAAAAATATTTTTATTTTTCGGAATATTATATACCTATTTAGTTAATATTGTA
83168982 ACTTCTCTCAATTAAACCCCATTTTAATTTATTTTTC-A-AAAATATTTATTTTAACCAAAAAAT
326 ACTTCTCTCAATTAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAAT
*
83169045 ATTTAAAACCATAAAATTGATTTCTCT-AAAATATTTTATATTTTCCGGAATATTATTTATCGAT
391 ATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTT-TATTTTCCGGAATATTATTTATCGGT
83169109 TTTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAAT--CTAG-AAACCCGATTA
455 TTTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGACTAGTAAACCCGATTA
83169165 ACTCCTAG-TTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCT-TTTTTAGGGCGT
1 ACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
83169228 T-C-AACAACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGA
66 TACAAAC-ACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGA
83169291 TCGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATT-G
130 TCGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGG
83169355 GCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATT
195 GCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATT
83169420 CGTGATA-TTTTCTAAAAATATTTTTATTTTT-GGAATATTATATACCTATTTAGTTAATATTGT
260 CGTGATATTTTTCTAAAAATATTTTTATTTTTCGGAATATTATATACCTATTTAGTTAATATTGT
83169483 AACTTCT-TCAATTAAACCCCA-TTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAA
325 AACTTCTCTCAATTAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAA
* *
83169546 TATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTA-TTTCCAGAATATTATTTATCAGT
390 TATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGT
83169610 TTTTAAATGAAATTAAGCTAACTAATTTTTTTT----AAATGACTAGTAAACCCGATTA
455 TTTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGACTAGTAAACCCGATTA
*
83169665 ACTCCTAGTTTTCACCC-GAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
1 ACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
83169729 TACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
66 TACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
83169794 CGAGGAGCTTCTATC-AAG-TAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGG
131 CGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGG
83169857 CGATACTCCCGTGGAAGAA-TTGTGTCAGCCTAAAAGGATGGGGGTA-TAGTATTCATGATATTC
196 CGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTC
*
83169920 GTGATATTTTTCTAAAAATATTTTTATTTTCCGGAATATTATATACCTATTTAGTTAATATTGTA
261 GTGATATTTTTCTAAAAATATTTTTATTTTTCGGAATATTATATACCTATTTAGTTAATATTGTA
* *
83169985 ACTTCTCT-AATGAAACCCCATTTTAATTTATTTTT-ACTAAAAATATTTATTTTAACCAAAAAA
326 ACTTCTCTCAATTAAACCCCATTTTAATTTATTTTTCAAT-AAAATATTTATTTTAACCAAAAAA
**
83170048 TATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCATT
390 TATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGT
83170113 TTTTAAATGAAATTAAGCTAACT-A-TTTTTTT----AAATG---AGTAAACCCGATTA
455 TTTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGACTAGTAAACCCGATTA
83170163 AGCTCCTAGCTTTCACCCGGAA-CCGATAAA-TTACTCAAAACTAGTAGACCTATTTTTAGGGCG
1 A-CTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCG
83170226 TTACAAACA-AACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGA
65 TTACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGA
83170290 TC-AGGAG-TTCTATCAAAGATAAGCAGAATTT-GTGGTCTGGAAAGGAAAGAGGAAAATATTGG
130 TCGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGG
*
83170352 GCGATACT-CCGTGGAAGAATTTGTGT-AG-CTACTAAGGATGGGGGTATTAGTATTCATGATAT
195 GCGATACTCCCGTGGAAGAATTTGTGTCAGCCTA-AAAGGATGGGGGTATTAGTATTCATGATAT
* * * *
83170414 TCGTGATATTTTTCTAAAAATATTTTTATTTTCCCG-ATATTA-GTACCTATTTAGTGATATCAC
259 TCGTGATATTTTTCTAAAAATATTTTTATTTTTCGGAATATTATATACCTATTTAGTTA-AT-A-
* * * * *
83170477 TGTGTAACGTCTCTCAATGAAACCGCATGTTAATTTA--TTTCAAT-AAATA-TTATTCT-ACC-
321 T-TGTAACTTCTCTCAATTAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCA
* * * *
83170536 -AAAATATTTAAAACCCATAAAATGGA-TGCTCAAAAAATATTTTTATTTTCCAGAATATTAATT
385 AAAAATATTTAAAA-CCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATT-ATT
* * **
83170599 TACCGATATTAAAAATGAAATTAAGCTAACTAATTTTTGTTTTTAAAGAAATGACTATAGTAAAC
448 TATCGGT-TTTTAAATGAAATTAAGCTAACTAA--TTT-TTTTTAAAGAAATGAC--TAGTAAAC
83170664 CCGGATTA
507 CC-GATTA
* * * * * * *
83170672 ACTTCGAGCTTTCACCCGGATCTCGA-ATAACTTACTCAAAACTAGATAGAGACTATTTTCAAGG
1 ACTCCTAGCTTTCACCCGGAACCCGATA-AACTTACTCAAAACTAG-TAGA-CCTATTTTTAGGG
* * * *
83170736 CATTACAAACACATACATACTCTGGAAAAATTTTGCGAATAAAAGTAGGTT
63 CGTTACAAACACA-ACATACTTTGG-AAAA-TTTGCGATTACAAGTAGGTT
83170787 GTGTTTCGTA
Statistics
Matches: 9976, Mismatches: 565, Indels: 374
0.91 0.05 0.03
Matches are distributed among these distances:
488 6 0.00
490 55 0.01
491 199 0.02
492 313 0.03
493 451 0.05
494 220 0.02
495 414 0.04
496 338 0.03
497 483 0.05
498 268 0.03
499 213 0.02
500 208 0.02
501 269 0.03
502 339 0.03
503 106 0.01
504 2 0.00
505 91 0.01
506 66 0.01
507 913 0.09
508 942 0.09
509 69 0.01
510 118 0.01
511 438 0.04
512 1199 0.12
513 833 0.08
514 906 0.09
515 487 0.05
516 30 0.00
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.36
Consensus pattern (513 bp):
ACTCCTAGCTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGT
TACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGAT
CGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGG
CGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTC
GTGATATTTTTCTAAAAATATTTTTATTTTTCGGAATATTATATACCTATTTAGTTAATATTGTA
ACTTCTCTCAATTAAACCCCATTTTAATTTATTTTTCAATAAAATATTTATTTTAACCAAAAAAT
ATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGGTT
TTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGACTAGTAAACCCGATTA
Found at i:83162487 original size:18 final size:18
Alignment explanation
Indices: 83162453--83162487 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
83162443 CCCCTTTTTA
* *
83162453 ATTTATTTTCACTAAAAT
1 ATTTATTTTAACCAAAAT
83162471 ATTTATTTTAACCAAAA
1 ATTTATTTTAACCAAAA
83162488 AATATTTAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (18 bp):
ATTTATTTTAACCAAAAT
Found at i:83163496 original size:19 final size:20
Alignment explanation
Indices: 83163472--83163515 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
83163462 CCACATTTTA
83163472 ATTTATTTT-A-CAAGAAAAT
1 ATTTATTTTAACCAA-AAAAT
83163491 ATTTATTTTAACCAAAAAAT
1 ATTTATTTTAACCAAAAAAT
83163511 ATTTA
1 ATTTA
83163516 AAACCATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.39
20 11 0.48
21 3 0.13
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (20 bp):
ATTTATTTTAACCAAAAAAT
Found at i:83164010 original size:19 final size:20
Alignment explanation
Indices: 83163986--83164029 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
83163976 CCCCATTTCA
83163986 ATTTATTTT-T-CAATAAAAT
1 ATTTATTTTATCCAA-AAAAT
83164005 ATTTATTTTATCCAAAAAAT
1 ATTTATTTTATCCAAAAAAT
83164025 ATTTA
1 ATTTA
83164030 AAACCATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.39
20 11 0.48
21 3 0.13
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (20 bp):
ATTTATTTTATCCAAAAAAT
Found at i:83166056 original size:19 final size:20
Alignment explanation
Indices: 83166032--83166075 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
83166022 CCCCATTTTA
*
83166032 ATTTATTTT-TCAAAAAAAT
1 ATTTATTTTAACAAAAAAAT
*
83166051 ATTTATTTTAACCAAAAAAT
1 ATTTATTTTAACAAAAAAAT
83166071 ATTTA
1 ATTTA
83166076 AAATCATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (20 bp):
ATTTATTTTAACAAAAAAAT
Found at i:83167560 original size:18 final size:20
Alignment explanation
Indices: 83167525--83167567 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
83167515 ACCCATTTTA
* *
83167525 ATTTATTTTTCA-CTAAAAT
1 ATTTATTTTTAACCAAAAAT
83167544 ATTTA-TTTTAACCAAAAAT
1 ATTTATTTTTAACCAAAAAT
83167563 ATTTA
1 ATTTA
83167568 AAACCATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (20 bp):
ATTTATTTTTAACCAAAAAT
Found at i:83170034 original size:19 final size:20
Alignment explanation
Indices: 83170010--83170053 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
83170000 CCCCATTTTA
* *
83170010 ATTTATTTTTA-CTAAAAAT
1 ATTTATTTTAACCAAAAAAT
83170029 ATTTATTTTAACCAAAAAAT
1 ATTTATTTTAACCAAAAAAT
83170049 ATTTA
1 ATTTA
83170054 AAACCATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (20 bp):
ATTTATTTTAACCAAAAAAT
Found at i:83171988 original size:19 final size:20
Alignment explanation
Indices: 83171964--83172007 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
83171954 TTTTATGTTT
* *
83171964 TAAATATTTTTGGT-TAAAA
1 TAAATATTTTTAGTGAAAAA
83171983 TAAATATTTTTAGTGAAAAA
1 TAAATATTTTTAGTGAAAAA
83172003 TAAAT
1 TAAAT
83172008 TAAATGGGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.43
Consensus pattern (20 bp):
TAAATATTTTTAGTGAAAAA
Found at i:83172967 original size:19 final size:18
Alignment explanation
Indices: 83172945--83172986 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
83172935 TTTATGGTTT
83172945 TAAATATTTT-TTGGTAAAA
1 TAAATATTTTATT-G-AAAA
83172964 TAAATATTTTATTGAAAA
1 TAAATATTTTATTGAAAA
83172982 TAAAT
1 TAAAT
83172987 TAAAATGGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 9 0.41
19 11 0.50
20 2 0.09
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (18 bp):
TAAATATTTTATTGAAAA
Found at i:83172973 original size:18 final size:19
Alignment explanation
Indices: 83172945--83172986 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
83172935 TTTATGGTTT
83172945 TAAATATTTTT-TGGTAAAA
1 TAAATATTTTTATGG-AAAA
*
83172964 TAAATA-TTTTATTGAAAA
1 TAAATATTTTTATGGAAAA
83172982 TAAAT
1 TAAAT
83172987 TAAAATGGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (19 bp):
TAAATATTTTTATGGAAAA
Found at i:83173935 original size:16 final size:18
Alignment explanation
Indices: 83173894--83173938 Score: 60
Period size: 16 Copynumber: 2.7 Consensus size: 18
83173884 ATTTTTAGAG
*
83173894 AAATAATTTTATGGTTTT
1 AAATAATTTTATGGTTTA
83173912 AAAT-ATTTT-TGG-TTA
1 AAATAATTTTATGGTTTA
83173927 AAATAATTTTAT
1 AAATAATTTTAT
83173939 TGAAAAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
15 6 0.25
16 8 0.33
17 6 0.25
18 4 0.17
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (18 bp):
AAATAATTTTATGGTTTA
Found at i:83174860 original size:20 final size:20
Alignment explanation
Indices: 83174835--83174872 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
83174825 TTAAAAACTG
*
83174835 AAATATATTTCGAGAAATAA
1 AAATATATTTAGAGAAATAA
*
83174855 AAATATTTTTAGAGAAAT
1 AAATATATTTAGAGAAAT
83174873 CAATTTTATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.03, G:0.11, T:0.34
Consensus pattern (20 bp):
AAATATATTTAGAGAAATAA
Found at i:83177862 original size:513 final size:513
Alignment explanation
Indices: 83170777--83184321 Score: 17628
Period size: 512 Copynumber: 26.8 Consensus size: 513
83170767 TTTGCGAATA
* * * * * * *
83170777 AAAGTAGGTTGTGTTTCGTAATGGCTTGAAAATA-GTCCTACTAGTTTTGAGTAAGTTTAT-TGA
1 AAAGTATGTTGTGTTT-GTAACGCCCTAAAAATAGGT-CTACTAGTTTTGAGTAAGTTTATCGGG
* * * *
83170840 ATCGGGTGTGAGAGCTA-GAGTT-ATGGTTGGTTTACTAGTCATTGTCTTTAAAAAAAAAATT-G
64 TTCCGG-GTGAAAGCTAGGAGTTAATCG--GGTTTACTAGTCATT-TCTTT--AAAAAAAATTAG
*
83170902 TTAGCTTAA-TTCATTTAAAAAATCGCGTAAATAAGTATT-C-GAAAATAAAAATATTTTTAGAG
123 TTAGCTTAATTTCATTT-AAAAATCG-GTAAATAA-TTTTCCGGAAAATAAAAATATTTTTAGAG
*
83170964 AAATCAATTTTATGGTTTTAAATATTTTTTGGTTAGAATAAAATCATTTT-TTG--AAA-AAATT
185 AAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAAT-AAAT-ATTTTATTGAAAAATAAATT
*
83171025 AAAAT-GGG-TT-ATT--GAGAAGTTAC-TTATTAACTAAATAGGTA-A-AATATTTCGGGAAAA
248 AAAATGGGGTTTCATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATA-TTCGGGAAAA
*
83171082 TAAAAATATTTTTAGAAAAATATCATGAATATCATGAATACTAATAGCCCCCATCCTTACTTTTT
312 TAAAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATA-CCCCCAT-C---C--TTT
* *
83171147 TTGTCTTGACACCAAATTCTTCCACGGGAG-AGTCGCCCAATATTTTCCTCTTT-CTTT-CAGA-
370 TAGGC-TGACA-CAAATTCTTCCACGGGAGTA-TCGCCCAATATTTTCCTCTTTCCTTTCCAGAC
*
83171208 C-CCAAATTCTGCTTATCTTT-ATAAAAGCTCCTCGATCACAATCCT-ATTGTCC-AACC-AC-T
432 CACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTT
83171267 -TAATCGCAAA-TTTCC
497 GTAATCGCAAATTTTCC
83171282 AAAGTATGTTGTGTTTGTAAC-CCCTAAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATC-GG-
1 AAAGTATGTTGTGTTTGTAACGCCCT-AAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGT
83171344 TCTC-GGTGAAAGCTAGGAGTTAAT-GGGTTTACTAGTCATTTCTTT-AAAAAAATTAGTTAGCT
65 TC-CGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCT
** * * *
83171406 TAA-TTCATTT-AAAATCAAATTAA-AATATT-CGAAAAATAAAAATATTTTTAAGAGAAATCAA
129 TAATTTCATTTAAAAATC-GGTAAATAATTTTCCGGAAAATAAAAATATTTTT-AGAGAAATCAA
83171467 -TTTAT-GTTTTAAATA-TTTTTGGTTAAAATAAATATTTTATT--AAAATAAATTAAAATGGGG
192 TTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGG
*
83171527 TTT-ATT-AGAGAAGTTACAATATTAACTAAATAAGTA-ATAATATTC-GGAAAATAAAAATATT
257 TTTCATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCGGGAAAATAAAAATATT
*
83171588 TTTAG-AAAATATCACGAATATCAT-AATACTAATACCCCCATCCTTTTAGGGTGACA-AAATTT
322 TTTAGAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAA-TT
*
83171650 CTT-CACGAGAGTAT-GCCCTAATA-TTT-CTCTTTCCTTTCCAGACCA-CAAATT-T-CTTATC
386 CTTCCACGGGAGTATCGCCC-AATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATC
*
83171708 TTTGATAGAAACT-CTCGATCACAATCCT-ATTGTCC-AACCTACTTGTAATCGCAAATTTTCC
450 TTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCC
83171769 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATA-GTCTACTAGTTTTG-GTAA-TTTATC-GGTT
1 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
83171830 CCGGGTGAAAGCTAGGAGTTAATCGGGTTTA-TA-TACATTTCTTT-AAAAAAATTAGTTAG-TT
66 CCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGT-CATTTCTTTAAAAAAAATTAGTTAGCTT
* * *
83171891 AATTCTTAACA-TTAAAAATC-GTAAA-ATATATT-CGAAAAATTAAAATATTTTTAGAGAAATC
130 AA-T-TT--CATTTAAAAATCGGTAAATA-ATTTTCCGGAAAATAAAAATATTTTTAGAGAAATC
*
83171952 AATTTTAT-GTTTTAAATA-TTTTTGGTTAAAATAAATATTTTTAGTGAAAAATAAATT-AAATG
190 AATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATA-TTTTATTGAAAAATAAATTAAAATG
* **
83172014 GGGTTTCATTTAGAGAAGTTACAATATTAACTATAATA-GTATATAATATTCGATTATTAAA-AA
254 GGGTTTCATTGAGAGAAGTTACAATATTAACTA-AATAGGTATATAATATTCG-GGA--AAATAA
83172077 TAAATATTTTTA-AAAAATAT-ACGAA-ATCAT-AATACTAATA-CCCCATCCTTTTAGGCTGAC
315 -AAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGAC
* *
83172137 ACAATTTC-T-CAC-GGAGTAT-GCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTAAT
379 ACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATT-CT
83172198 GC-TATCTTTTTTG-TAGAAGCTCCTCGATCACAATCCTAA-TGTCCAAACCCTAC-T-TAAT-G
443 GCTTATC---TTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAA-CCTACTTGTAATCG
83172257 CAAATTTT-C
504 CAAATTTTCC
83172266 AAAGTATGTTGT-TTTG-AACG-CCTAAAAATAGG--TACTTAGTTTTGAGTAAGTTTATC-GGT
1 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTAC-TAGTTTTGAGTAAGTTTATCGGGT
*
83172325 TCCGGGTGAAAGCTAGGAGTTAATCGGGTTTAC-ACGTCATTTCTTTTAAAAAAATTAGTTA-CT
65 TCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTA-GTCATTTCTTTAAAAAAAATTAGTTAGCT
*
83172388 TAATTTCATTT-AAAATCGGTAAATAATATTCC-GAAAATAAAAATA-TTTTAG-GAAATCAATT
129 TAATTTCATTTAAAAATCGGTAAATAATTTTCCGGAAAATAAAAATATTTTTAGAGAAATCAATT
*
83172449 TTATGGTTTT-AATATTTTTTGGTTAAAAT-AATATTTTATTGAAAAATAAATT-AAATAGGGTT
194 TTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTT
** * ** *
83172511 T--TAAAAAGAAGTTACAATATTAAACTAAATA--TATATAA-ATTCCAGAATA-AAAAATATTT
259 TCATTGAGAGAAGTTACAATATT-AACTAAATAGGTATATAATATTCGGGAAAATAAAAATATTT
83172570 TTAGAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGAGCACAAATTC
323 TTAGAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGA-CACAAATTC
83172635 TTCCA-GGGAGTATCGCCCAATATTTT-C-CTTTCCTTTCCAGACCACCAAATTCTGCTTA-CTT
387 TTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTT
*
83172696 T-ATAGAAACTCCTCGATCACAATCCTAATTGTCCAAACC-ACTTGTAATCGCAAATTTTCC
452 TGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCC
83172756 AAAGTATG-T-TG-TTGTAACGCCC-AAAAATA-GTCTACTAGTTTTGAGTAAG-TTATCGGGTT
1 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
83172815 CC-GGTGAAAGCTAGGAGTTAATCGGGTTTACTAG-CATTT-TTT-AAAAAAA-TATGTTA-CTT
66 CCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTA-GTTAGCTT
83172874 AATTTCATTTAAAAATCGGTAAATAATTTT-C-GAAAATAAAAATATTTTTTAG-GAAATCAATT
130 AATTTCATTTAAAAATCGGTAAATAATTTTCCGGAAAATAAAAATA-TTTTTAGAGAAATCAATT
83172936 TTATGGTTTTAAATATTTTTTGG-TAAAATAAATATTTTATTG-AAAATAAATTAAAAT-GGGTT
194 TTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTT
*
83172998 TAATTGAGAGAAGTTACAATATTAACTAAATA-GTATATAATATTC--G--AAT-AAAATATTTT
259 TCATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCGGGAAAATAAAAATATTTT
83173057 TAG-AAAATATCACGAATATCAT-AATACTAATACCCCC-TCCTTTTAGGCTGACACAAATTTCT
324 TAGAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAA-TTCT
83173119 TCCAC-GGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTAT-TTT
388 TCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTT
*
83173182 GATAGAAGCTCCTCGATCACAATCC--ATT-TCC-AACCTACTTGTAATCGCAAAATTTCC
453 GATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCC
83173239 AAAGTATG-T-TG-TTGTAACGCCCTAAAAATAGGTC-ACTAGTTTTGAGTAAGTTTATC-GGTT
1 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
83173299 CCGGGTGAAAGCTAGGAGTTAATCGGG-TTACTA-TCATTTCTTTTAAAAAAAAATTAGTTA-CT
66 CCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTC-TTT-AAAAAAAATTAGTTAGCT
*
83173361 TATTTTC--TT-AAAAT--G-AAATAA--TTCC-GAAAATAAAAATATTTTTAGAGAAATCAA-T
129 TAATTTCATTTAAAAATCGGTAAATAATTTTCCGGAAAATAAAAATATTTTTAGAGAAATCAATT
**
83173416 TTATTATTTT-AATA-TTTTTGG-T-AAATAAAATATTTTATTGAAAAATAAATTAAAAT-GGGT
194 TTATGGTTTTAAATATTTTTTGGTTAAAAT-AAATATTTTATTGAAAAATAAATTAAAATGGGGT
* *
83173476 TTCATTAAGA-AAG-TACAATATTAACTAAATA-GTAT-TAAT-TTCGAGAAAA-AAAAATATTT
258 TTCATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCGGGAAAATAAAAATATTT
83173535 TTAGAAAAATATCACGAATATCATGAATACTAATA-CCCCATCCTTTTAGGCTGACACAAA-TCT
323 TTAGAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCT
83173598 TCCACGGGAGTATCGCCCAA-ATTTTCCT-TTTCCTTTCCAGACCA-CAAATT-TGCTTATCTTT
388 TCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTT
*
83173659 GATAGAAGCT-CTCGATCACAATCCTAATTG-CC-AACCTAC-TGTTAATC-CCAATTTTCC
453 GATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTG-TAATCGCAAATTTTCC
*
83173716 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTA-TAGTTGAGTAAGTTTATCGGGT
1 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGT-TTTGAGTAAGTTTATCGGGT
83173780 TCC-GGTG-AAGCTAGGAGTTAATC-GG-TTACTAGT-ATTTCTTTAAAAAAAATTA-TTAGCTT
65 TCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTT
*
83173839 AATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAAT-AATTT
130 AATTTCATTTAAAAATCGGTAAATAATTTTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTT
83173903 TATGGTTTTAAATA-TTTTTGGTTAAAAT--A-ATTTTATTGAAAAATAAATTAAAAT-GGGTTT
195 TATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTT
* * **
83173963 CATTGAGAGAAGTTACAATATTTACTAAA-ATG-ATATAATATTCCAGAAAATTAAAAAT-TATT
260 CATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCGGGAAAA-TAAAAATAT-TT
*
83174025 TTAGAAAAATATTACGAATATACATGAATACTAATA--CCCATCCTTTTA-GCTGACACAAATTC
323 TTAGAAAAATATCACGAATAT-CATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTC
83174087 TTCCACGGGAGTA-CGCCCAATATTTT-C-CTTTCCTTTCCAG--CACCAAATTCTGCTTATCTT
387 TTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTT
* *
83174147 TGATAGAAGCT-C-CGATCACAAT-CT-ATAGT-CAAACCTA-TTGT-ATCACAAA-TTTCC
452 TGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCC
83174201 AAAGTATGTTGTGTTTGTAAC-CCCT-AAAATAGGTCTATCTAG-TTTGAGTAAG-TTATC-GGT
1 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTA-CTAGTTTTGAGTAAGTTTATCGGGT
*
83174261 TTCGGGTGAAAGC-AGGAGTTAATCGGGTTTACTA-TCATTTCTTTAAAAAAAATTAGTTAGCTT
65 TCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTT
* * *
83174324 AAATTTCATAAATAAAATAATCCG--AATAA--TTCCGAAAAATAAAAAT-TTTTTAGAGAAATC
130 -AATTTCAT---TTAAA-AATCGGTAAATAATTTTCCGGAAAATAAAAATATTTTTAGAGAAATC
83174384 AATTTTATGG-TTTAAATA--TTTTGG-TAAAATAAATATTTTATTGAAAAATAAATTAAAATGG
190 AATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGG
* *
83174445 GGTTT-ATTGAAAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGG-AAA-AAAAATA
255 GGTTTCATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCGGGAAAATAAAAATA
*
83174507 -TTTTAGAAAAATATCATG-ATATCTAAATGAATACTAATTA-CCCCATCCTTTTAGGCTGACAC
320 TTTTTAGAAAAATATCACGAATATC---ATGAATACTAA-TACCCCCATCCTTTTAGGCTGACAC
* *
83174569 --ATTTTTCCACGGGAGTATCGCCCAATATTTTTCTCTTTCCTTTCTCAGACCACC-AATTCTGC
381 AAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTC-CAGACCACCAAATTCTGC
* *
83174631 TTATCTTT-ATAGAAGCT-CTCCGATTCAC-ATCCTTATTGTTCCAAACC-ACTTGTTATCGCAA
445 TTATCTTTGATAGAAGCTCCT-CGA-TCACAATCCTAATTG-TCCAAACCTACTTGTAATCGCAA
83174692 A-TTTCC
507 ATTTTCC
*
83174698 AAAGTATGTTGTG-TTGTAAC-CGCTAAAAATAGGTCTACTAG--TTGAGTAAGTTTA-C-GG-T
1 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
*
83174756 -CGGGTGAAAGCTAGGA-TTAATC-GGTTTACTAGTCATTTTTTTAAAAAAATATTAGTTAGCTT
66 CCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAA-ATTAGTTAGCTT
*
83174818 AA-TTCATTTAAAAA-CTG-AAAT-ATATTT-C-GAGAAATAAAAATATTTTTAGAGAAATCAAT
130 AATTTCATTTAAAAATCGGTAAATAAT-TTTCCGGA-AAATAAAAATATTTTTAGAGAAATCAAT
*
83174877 TTTAT-GTTTTAAATA-TTTTTGGTTAAAATAAAAATTTTATT-AAAAATAAATTAAAA-GGTGG
193 TTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGG-GG
*
83174938 --T-ATT-ATGAGAAGTTACAATATTAACTAAATAGG-ATATAATATTTC-CGAAAATAAAAATA
257 TTTCATTGA-GAGAAGTTACAATATTAACTAAATAGGTATATAATA-TTCGGGAAAATAAAAATA
83174997 TTTTTA-AGAAAATATCACGAAATATCATG-A-A-TAATACCCCCATCCTTTTAGGCTGACACAA
320 TTTTTAGA-AAAATATCACG-AATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAA
83175058 ATTCTTCCACGGGAGTATCGCCCCAATATTTGTCCTCTTTCCTTTCCAGACCACCAAATTCTGCT
383 ATTCTTCCACGGGAGTATCG-CCCAATATTT-TCCTCTTTCCTTTCCAGACCACCAAATTCTGCT
83175123 TATCTTT-AT-GAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATC-CAAATTT
446 TATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTT
83175185 TCC
511 TCC
*
83175188 AAAGTATGTT-T-TTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTTAT-GTGT
1 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAG-TTTATCGGGT
*
83175250 TCCGCGTGTGAAAGCTAGGAGTT-ATCGGG-TTACTAGTCATTTC-TTAAAAAAAATTTGTTAGC
65 TCCG-G-GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGC
* *
83175312 TTAATTTCATTTAAAAATCGG-AAATAATATT-CGG-AAATAAAAATATTTTTAGAGAAATTAAT
128 TTAATTTCATTTAAAAATCGGTAAATAATTTTCCGGAAAATAAAAATATTTTTAGAGAAATCAAT
*
83175374 TTTATGGTTTTAAATA---TTTGGAT-AAATAAATATTTTATTGAAAAATAAATTAAAATGGGGT
193 TTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGT
* * *
83175435 TT-ATTGAGAGAAG-TACAATATTGACTATATGAAGTCGGCATCATTAATATTCGGGAAAATAAA
258 TTCATTGAGAGAAGTTACAATATTAAC--TA--AA-TAGGTAT-A-TAATATTCGGGAAAATAAA
*
83175498 AATATTTATAG-AAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACAC
316 AATATTTTTAGAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACAC
*
83175562 AAATTCTT-CACGGGAGTATCGCCC-ATATTTT-CTCTTTCCTTTCCAGACCATC-AATTCTGCT
381 AAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCT
* * * *** *
83175623 T-TCTTTCATAAAAGCTCCTCGATCACAATCCTAATTGTCCAAACCCACGCCCTAAAAATAGGTC
446 TATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTA----CTTGTAAT-CG-C
* *
83175687 TACTAGTTTT-G
505 -A--AATTTTCC
* * * * * * * * ***
83175698 AGTAAGTTTATCGGGTTCCGGGTGAAAG--CTAGAAGTTAATCGGGTTTACTAGTCATTTCTTTA
1 A--AAGTATGTTGTGTT---TGT-AACGCCCTA-AA---AAT-AGGTCTACTAGT--TTTGAGT-
* ** ** * * * *** * * * * ***
83175761 AAATAAAAT-TAGTT--AGCT-TAA--TTTCATTTAAATATC-GG-TAAATAAT--TTTCCGAAA
52 AAGT-TTATCGGGTTCCGGGTGAAAGCTAGGAGTT--A-ATCGGGTTTACTAGTCATTT-CTTTA
** ** * * *** ** *
83175816 AATAAAAATATTTTTAG-AGAA-ATCAATTTTATTGT-TTTAAAT-ATTTT-TGGTTAAAAT--A
112 AA-AAAAAT-TAGTTAGCTTAATTTC-ATTTAAAAATCGGTAAATAATTTTCCGG--AAAATAAA
* * * ** * * **** * * *
83175874 AATATTTTATTGAAAAATAAATTAAAATGGGGTTT---CATTGAGAGAAGTTACAAT-ATTAACT
172 AATATTTT-TAGAGAAATCAATT-TTAT-GGTTTTAAATATTTTTTG--GTTAAAATAAAT-ATT
** * ** * * ** * * * *
83175935 AAATAGGTATATAATATTCTGAAAAATAAGAATATT--TTTAGATAAATATGACGAATA-TCA-T
231 TTATTGAAAAATAA-A-T-T--AAAAT-GGGGT-TTCATTGAGAGAAGT-T-AC-AATATTAACT
* * ** * *****
83175996 GAATA-CTA-ATACCCCCATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
286 AAATAGGTATATA---ATATTC--------------------------------------GGGAA
*********************************************************
83176059 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTAGGC
310 AATAAAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGC
*
83176124 TGA-ATCAAATTCTTCCACGAGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAA
375 TGACA-CAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAA
* * *
83176188 TTATGCTTATCTTTGATAGAAGCTTCTCGATCACAATCCTAATTGTCCAAGCCTACTTGTAATCG
439 TTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCG
83176253 CAAATTTTCC
504 CAAATTTTCC
83176263 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
1 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
* *
83176328 CCGGGTGAAAGCTAGGAGTTAATCAGGCTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTA
66 CCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTA
*
83176393 ATTTCATTTAAAAATCGGTAAATAATTTTCCAGAAAATAAAAATATTTTTAGAGAAATCAATTTT
131 ATTTCATTTAAAAATCGGTAAATAATTTTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTT
* * *
83176458 ATGGTTTTAAATA-TTTTTGGTTAAAATTAATATTTTATTAAAAAATAAATTAAAATAGGGTTTC
196 ATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTC
*
83176522 ATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCGGGAGAATAAAAATATTTTTA
261 ATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCGGGAAAATAAAAATATTTTTA
83176587 GAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCC
326 GAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCC
* * * * *
83176652 ACGAGAGTATCACCCAATATTTTCCTCGTTCCTTTCCAGACCACCAAATTATGCTTATCTTTCAT
391 ACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGAT
* *
83176717 AGAAGCTCCTCGATCACAATCCTAATTGTCCAAGCCTACTTGTAATCACAAATTTTCC
456 AGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCC
*
83176775 AAAGTATGTTGTGTTTGTAAGGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
1 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
* *
83176840 CCGGGTGAAAGCTAGGAGTTAATCAGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTATCTTA
66 CCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTA
* * *
83176905 ATTTCATTTAAATATCGGTAAATAATATTT-CGAAAAATAAAAATATTTTTTGAGAAATCAATTT
131 ATTTCATTTAAAAATCGGTAAATAAT-TTTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTT
* * *
83176969 TATGGTTTTAAATATTTTTTAGTTAAAATAAATATTTTATTAAAAAATAAATTAAAATGCGGTTT
195 TATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTT
* ** *
83177034 CATTGAGAGACGTTACAATATCGACTAAATAGGTATATAATATTCGGGAAAATAAAAATATTTGT
260 CATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCGGGAAAATAAAAATATTTTT
* *
83177099 AGAAAAATATCGCGAATATCATGAATACTAA-ACCCCCATCCTTTTAGGCTGACACAAATTCCTC
325 AGAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTC
* *
83177163 CACTGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGA-CATCCAAATTCTGCTTATCTCTG
390 CACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCA-CCAAATTCTGCTTATCTTTG
* * * *
83177227 ATAGAAGCTCCTCGATCATAATCTTAATTGTCCAAACCTACTTATAATCGCAAATTTTCT
454 ATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCC
*
83177287 AAAGTATGTTGTATTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
1 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
83177352 CCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTA
66 CCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTA
83177417 ATTTCATTTAAAAATCGGTAAATAATTTTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTT
131 ATTTCATTTAAAAATCGGTAAATAATTTTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTT
* *
83177482 ATTGTTTTCAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTC
196 ATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTC
* *
83177547 ATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCTGAAAAATAAAAATATTTTTA
261 ATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCGGGAAAATAAAAATATTTTTA
* * * *
83177612 GAAAAATATGACGAATATCATGAATACTAATACCCCAATCGTTTTAGGCTGACTCAAATTCTTCC
326 GAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCC
* *
83177677 ACGAGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTATGCTTATCTTTGAT
391 ACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGAT
* * *
83177742 AAAAGCTTCTCGATCACAATCCTAATTGTCCAAGCCTACTTGTAATCGCAAATTTTCC
456 AGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCC
83177800 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
1 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
* * * * *
83177865 CCGGGTGAAAGATAGGAGTTAATCAGGCTTACTAGTCATTTCTTTAAAAATAATTATTTAGCTTA
66 CCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTA
* * * *
83177930 ATTTCATTTAAAATTCGGTAAATAATATTCCCGAAAATAAAAATATTTTAAGAGAAATCAATTTT
131 ATTTCATTTAAAAATCGGTAAATAATTTTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTT
* *
83177995 ATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTTTTGAAAAATAAATTAAAATGCGGTTTC
196 ATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTC
* * *
83178060 ATTGAGAGAAGTTACAATATTGACTAAATAGGTATAAAATATTCGGGAAGATAAAAATATTTTTA
261 ATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCGGGAAAATAAAAATATTTTTA
* *
83178125 GAAAAATATCATGAATATCATGAATACTAATACCCCCATCCTTTTAAGCTGACACAAATTCTTCC
326 GAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCC
* *
83178190 ACGGGAGTATCGCCCAATATTTTCCCCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTCAT
391 ACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGAT
* * *
83178255 AGAAGCTCCTGGATCACAATCCTAATTGTCCAAACCTACTTTTAATCGAAAATTTTCC
456 AGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCC
* * * *
83178313 AAAGTATGTTGTGTTTGTAACTCCTTAAAAATAGCTCTACTAGTTTTGAGTAAGTTTATCGAGTT
1 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
* * * *
83178378 CCGGGTGAAAGCTAGGGGTTAATCGGGTTTACTAGTCATTTATTTAAAAAAAATTATTTAGTTTA
66 CCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTA
* * * * *
83178443 TTTTCATTTAAAAATCGGTAAGTAATATTT-TGGAAAATGAAAATACTTTTAGAGAAATCAATTT
131 ATTTCATTTAAAAATCGGTAAATAAT-TTTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTT
* * *
83178507 TATGGTTTTAAATATATTTTGGTTAAAATAAATATTTTATTCAAAAATAAACTAAAATGGGGTTT
195 TATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTT
*
83178572 CATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCTGGAAAATAAAAATATTTTT
260 CATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCGGGAAAATAAAAATATTTTT
83178637 AGAAAAATATCACGAATATCATGAATACTAATA-CCCCATCCTTTTAGGCTGACACAAATTCTTC
325 AGAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTC
* *
83178701 CACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGTTTATCTTTCA
390 CACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGA
*
83178766 TAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTTTAATCGCAAATTTTCC
455 TAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCC
*
83178825 AAAGTATGTTGTGTTTGTAAAGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
1 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
* * * * *
83178890 CCGGCTGAAAGTTAGGAGGTAATCGGGTTTACTAGTCATGTTTTTTTTAAAAAAATTAGTTAGCT
66 CCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCA--TTTCTTTAAAAAAAATTAGTTAGCT
* *
83178955 TAATTTCATTTAAATATCGGTAAATAATATT-C-GAAAATAAAAATATTTTTAGAGAAATCAATT
129 TAATTTCATTTAAAAATCGGTAAATAATTTTCCGGAAAATAAAAATATTTTTAGAGAAATCAATT
* *
83179018 TTATGGTTTTAAATATTTTTTGGTTAAAATAAATACTTTACTGAAAAATAAATTAAAATGGGGTT
194 TTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTT
* * *
83179083 TAATTGAGAGAAGTTACAATATTAACTAAATAGGTACATAATATTCAGGAAAATAAAAATA-TTT
259 TCATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCGGGAAAATAAAAATATTTT
*
83179147 TAGAAAAATATCACGAATATCATGAATACTAAT-CCCCCATCCTTTTAGGCT-ACACAAATTCCT
324 TAGAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTT
* *
83179210 CCACTGGAGTATCGCCCAATA-TTTCCACTTTCCTTTCCAGA-CATCCAAATTCTGCTTATCTTT
389 CCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCA-CCAAATTCTGCTTATCTTT
* * * * ** *
83179273 TATAGAAACTCCTCGAACATAATTTTAATTGTCCAAACCTACTTGTAATCAC-AATTTT-C
453 GATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCC
* *
83179332 -AAGTATGTTGTATTTG-AAAGCCCTAAAAATA-GTCTACTAGTTTTGAGTAAGTTTATCGGGTT
1 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
83179394 CCGGGTGAAAGCTA-GAGTTAATC-GGTTTACTAGTCATTTCTTTAAAAAAGACATTAGTTAGCT
66 CCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAA-A-ATTAGTTAGCT
83179457 TAATTTCATTT-AAAATCGGTAAAT-A-TTTCCGGAAAATAAAAATATTTTTAGAGAAATCAATT
129 TAATTTCATTTAAAAATCGGTAAATAATTTTCCGGAAAATAAAAATATTTTTAGAGAAATCAATT
*
83179519 TTATGG-TTTAAATATTTTTT-GTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGCGGTT
194 TTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTT
* **
83179582 TCATTGAGA-AAGTTACAATA-TAACTAAATAGG-ATATAACATTC-GG-AAATAAAAATATTGC
259 TCATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCGGGAAAATAAAAATATTTT
* *
83179642 T--AAAAATATTATGAATATCATGAATACTAATA-CCCCATCCTTTTAGGCTGACACAAATTCTT
324 TAGAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTT
* * * *
83179704 CCACGGGAGTATGGCCCAATATTTTCCCCTTTCCTTTCTAGACCACCAAATTCTGCTTATCTTTC
389 CCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTG
* **
83179769 ATAGAAGCTCCTTGATCACAATCCTAATTGTTGAAACCTACATT-TAATCGCAAATTTTCC
454 ATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC-TTGTAATCGCAAATTTTCC
* * * *
83179829 -AAGTATG-TG-GTTTGTAACG-CCTAAAAATAGCTCTACTAGTTTTGA-TAAATTTAT-TGATT
1 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
* * *
83179888 CC-GGTGAAAGCTAGGAGTTAATC-AGCTTACTAGTCATTTCTTTAAAAAAAATTATTTAGCTTA
66 CCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTA
83179951 ATTTCATTTAAAAATCGGTAAATAATTTTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTT
131 ATTTCATTTAAAAATCGGTAAATAATTTTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTT
*
83180016 ATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGCGGTTTC
196 ATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTC
* * *
83180081 ATTGAGAGAAGTTACAATATTGACTAAATAGGTATAAAATATTCGGGAAAATAAAAATATTTATA
261 ATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCGGGAAAATAAAAATATTTTTA
* *
83180146 GAAAAATATCACGAATATCATGAATAATAATACCCCCATCCTTTTAGGCTGACACAAATTCCTCC
326 GAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCC
* * * *
83180211 ACTGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAAACGACCAAATTATGCTTATCTTTGAT
391 ACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGAT
* *
83180276 AGAAGCTTCTCGATCACAATCCTAATTGTCCAAGCCTACTTGTAATCGCAAATTTTCC
456 AGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCC
* * *
83180334 AAAGTATGTTGTGTTTGTAACGCCTTAAAAATAGGTCTGCTAGTTTTGAGTATGTTTATCGGGTT
1 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
83180399 CCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAATAACATTAGTTAGCT
66 CCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAA-AA-ATTAGTTAGCT
*
83180464 TAATTTCATTTAAATATCGGTAAATAATTTTCCGGAAAATAAAAATATTTTTAGAGAAATCAATT
129 TAATTTCATTTAAAAATCGGTAAATAATTTTCCGGAAAATAAAAATATTTTTAGAGAAATCAATT
*
83180529 TTATTGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATT-AAAAATAAATTAAAATGGGGTT
194 TTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTT
* *
83180593 TCATTGAGAGAAGTTA-AATATTAACTAAATAGGTATATAATATTCTGAAAAATAAAAATATTTT
259 TCATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCGGGAAAATAAAAATATTTT
* * * *
83180657 TAGAAAAATATGACGAATATCATGAATGCTAATACCCCAAT-CTTTTAGGCTGACTCAAATTCTT
324 TAGAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTT
* *
83180721 CCACGAGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTATGCTTATCTTTG
389 CCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTG
* *
83180786 ATAGAAGCTTCTCGATCACAATCCTAATTGTCCAAGCCTACTTGTAATCGCAAATTTTCC
454 ATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCC
*
83180846 GAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
1 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
* * *
83180911 CCGGGTGAAAGCTAGGAGTTAATCAGGCTTACTAGTCATTTCTTTAAAAAAAATTATTTAGCTTA
66 CCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTA
* * * *
83180976 ATTTCATTTAAAATTCGGTAAATAATATTCCCGAAAATAAAAATATTTTAAGAGAAATCAATTTT
131 ATTTCATTTAAAAATCGGTAAATAATTTTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTT
*
83181041 ATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGCGGTTTC
196 ATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTC
* *
83181106 ATTGAGAGAAGTTACAATATTGACTAAATAGGTA-A-AATATTCGGGAAGATAAAAATATTTTTA
261 ATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCGGGAAAATAAAAATATTTTTA
*
83181169 GAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAAGCTGACACAAATTCTTCC
326 GAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCC
* *
83181234 ACGGGAGTATCGCCCAATATTTTCCCCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTCAT
391 ACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGAT
* * * *
83181299 AGAAGCTCCTGGATCACAATCCTATTTGTCCAAACCTACTTTTAATCGAAAATTTTCC
456 AGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCC
* * * * *
83181357 AAAGTATGTTGTGTTTGCAACTCCTTAAAAATAGCTCTACTAGTTTTGAGTAAGTTTATCGAGTT
1 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
* * *
83181422 CCGGGTGAAAGCTAGG-GTTAATCGGGTTTACTAGTCATTTATTTAAAAAAAATTATTTAGTTTA
66 CCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTA
* ** * * *
83181486 TTTTCATTTAAAAATCGGTATTTAATATTT-TGGAAAATGAAAATACTTTTAGAGAAATCAATTT
131 ATTTCATTTAAAAATCGGTAAATAAT-TTTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTT
* *
83181550 TATGGTTTTAAATATATTTTGGTTAAAATAAATATTTTATTGAAAAATAAACTAAAATGGGGTTT
195 TATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTT
*
83181615 CATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCTGGAAAATAAAAATATTTTT
260 CATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCGGGAAAATAAAAATATTTTT
83181680 AGAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTC
325 AGAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTC
* *
83181745 CACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGTTTATCTTTCA
390 CACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGA
*
83181810 TAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTTTAATCGCAAATTTTCC
455 TAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCC
*
83181869 AAAGTATGTTGTGTTTGTAAAGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
1 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
* * *
83181934 CCGGCTGAAAGCTAGGAGGTAATCGGGTTTACTAGTCATGTTTTTTTAAAAAAAATTAGTTAGCT
66 CCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCA--TTTCTTTAAAAAAAATTAGTTAGCT
* * *
83181999 TAATTTTATTTAAATATCGGTAAATAATATTT-CGAAAAATAAAAATATTTTTAGAGAAATCAAT
129 TAATTTCATTTAAAAATCGGTAAATAAT-TTTCCGGAAAATAAAAATATTTTTAGAGAAATCAAT
* *
83182063 TTTATGGTTTTAAATATTTTTTGGTTAAAATAAATACTTTACTGAAAAATAAATTAAAATGGGGT
193 TTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGT
* * *
83182128 TTAATTGAGAGAAGTTACAATATTAACTAAATAGGTACATAATATTCAGGAAAATAAAAATATTT
258 TTCATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCGGGAAAATAAAAATATTT
*
83182193 TTAGAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCC
323 TTAGAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCT
* *
83182258 TCCACTGGAGTATCGCCCAATATTTTCCACTTTCCTTTCCAGA-CATCCAAATTCTGCTTATCTT
388 TCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCA-CCAAATTCTGCTTATCTT
* * * * * * *
83182322 TTATAGAAACTCCTCGAACATAATCTTAATTGTCTAAACCTACTTGTAATCGCAAATTTTCT
452 TGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCC
*
83182384 AAAGTATGTTGTATTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
1 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
83182449 CCGGGTGAAAGCTA-G-G---A----G--T--TA---ATTTCTTTAAAAAAGAATTAGTTAGCTT
66 CCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAA-AATTAGTTAGCTT
83182498 AATTTCATTTAAAAATCGGTAAATAATTTT-CGGAAAATAAAAATATTTTTAGAGAAATCAATTT
130 AATTTCATTTAAAAATCGGTAAATAATTTTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTT
* *
83182562 TATGGTTTTAAATA-TTTTTGGTTAAAATTAATATTTTATTGAAAAATAAATTAAAATGGGGCTT
195 TATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTT
* *
83182626 CATTGAGAGAAGTTACAATATTAACTGAATAGGTATATAATATTCGGGAGAATAAAAATATTTTT
260 CATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCGGGAAAATAAAAATATTTTT
83182691 AGAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTC
325 AGAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTC
* * * * *
83182756 CACGAGAGTATCACCCAATATTTTCCTCGTTCCTTTCCAGACCACCAAATTATGCTTATCTTTCA
390 CACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGA
* *
83182821 TAGAAGCTCCTCTATCACAATCCTAATTGTCCAAGCCTACTTGTAATCGCAAATTTTCC
455 TAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCC
83182880 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
1 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
* * *
83182945 CCGGGTGAAAGCTAGGAGTTAATCAGGCTTACTAGTCATTTCTTTAAAAAAAATTATTTAGCTTA
66 CCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTA
*
83183010 ATTTCATTTAAAAATCGGTAAATAATATTCC-GAAAATAAAAATATTTTTAGAGAAATCAATTTT
131 ATTTCATTTAAAAATCGGTAAATAATTTTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTT
*
83183074 ATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGCGGTTTC
196 ATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTC
* * *
83183139 ATTGAGAGAAGTTACAATATTGACTAAATAGGTATAAAATATTCGGGAAAATAAAAATATTTATA
261 ATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCGGGAAAATAAAAATATTTTTA
* *
83183204 GAAAAATATCACGAATATCATGAATAATAATACCCCCATCCTTTTAGGCTGACACAAATTCCTCC
326 GAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCC
* * * *
83183269 ACTGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAAACGACCAAATTATGCTTATCTTTGAT
391 ACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGAT
* *
83183334 AGAAGCTTCTCGATCACAATCCTAATTGTCCAAGCCTACTTGTAATCGCAAATTTTCC
456 AGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCC
83183392 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
1 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
* * *
83183457 CCGGGTGAAAGCTAGGAGTTAATCAGGCTTACTAGTCATTTCTTTAAAAAAAATTATTTAGCTTA
66 CCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTA
* * * *
83183522 ATTTCATTTAAAAATCAGTAAACAATATTCCAGAAAATAAAAATATTTTTAGAGAAATCAATTTT
131 ATTTCATTTAAAAATCGGTAAATAATTTTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTT
* * *
83183587 ATTGTTTTAAATA-TTTTTGGTTAAAATAAATATTTTATTGAAAAATAAACTAAAATGGGGTTTA
196 ATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTC
* *
83183651 ATAGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCTGGAAAATAAAAATATTTTTA
261 ATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCGGGAAAATAAAAATATTTTTA
* *
83183716 GAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATACTTCT
326 GAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCC
*
83183781 ACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGAGCACCAAATTCTGCTTATCTTTGAT
391 ACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGAT
* * *
83183846 AGAAGCTCCTCGATTACAATCCTAATGGTCCAAACCTACTTGTATTCGCAAATTTTCC
456 AGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCC
* * * * *
83183904 AAAGTATGTTGTGTTTGTAATGCCCTAAAAATAAGTCTACTAGGTTTGAGTAAGTTTATTGAGTT
1 AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
* *
83183969 CCAGGTGAAAGCTAGGAGTTAATCGGGTTTACTTGTCATTTCTTTAAAAAAAATTAGTTAGCTTA
66 CCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTA
* **
83184034 ATTTCATTT-AAAATCGGTAAA-AATATTCCAAAAAATAAAAATATTTTTAGAGAAATCAATTTT
131 ATTTCATTTAAAAATCGGTAAATAATTTTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTT
*
83184097 ATGGTTTTAAATATTTTTTGTTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTC
196 ATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTC
* * *
83184162 ATTGAGAGAAGTTACAATATTAACTAAATAGGTAAATAATATTCCGAAAAATAAAAATATTTTTT
261 ATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCGGGAAAATAAAAATA-TTTTT
* *
83184227 AGAAAAATATCACGAATATCATGAATACTAATACCCTCATCCTTTTAGGCTGACACAAATACTTC
325 AGAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTC
*
83184292 CACGCGAGTATCGCCCAATATTTTCCTCTT
390 CACGGGAGTATCGCCCAATATTTTCCTCTT
83184322 AGTTACTACA
Statistics
Matches: 11625, Mismatches: 883, Indels: 1057
0.86 0.07 0.08
Matches are distributed among these distances:
475 3 0.00
476 28 0.00
477 83 0.01
478 61 0.01
479 79 0.01
480 101 0.01
481 80 0.01
482 50 0.00
483 178 0.02
484 169 0.01
485 325 0.03
486 261 0.02
487 252 0.02
488 257 0.02
489 277 0.02
490 266 0.02
491 155 0.01
492 156 0.01
493 223 0.02
494 209 0.02
495 272 0.02
496 584 0.05
497 315 0.03
498 175 0.02
499 105 0.01
500 57 0.00
501 130 0.01
502 64 0.01
503 36 0.00
504 129 0.01
505 213 0.02
506 59 0.01
507 4 0.00
508 19 0.00
509 107 0.01
510 456 0.04
511 523 0.04
512 2744 0.24
513 1252 0.11
514 94 0.01
515 567 0.05
516 3 0.00
517 8 0.00
518 6 0.00
519 3 0.00
520 22 0.00
521 42 0.00
522 17 0.00
523 11 0.00
524 13 0.00
526 6 0.00
527 14 0.00
528 1 0.00
529 5 0.00
530 2 0.00
531 2 0.00
532 5 0.00
533 10 0.00
534 2 0.00
535 1 0.00
536 4 0.00
537 4 0.00
549 4 0.00
550 9 0.00
551 9 0.00
552 17 0.00
553 9 0.00
554 5 0.00
555 6 0.00
556 21 0.00
557 43 0.00
558 24 0.00
559 24 0.00
560 15 0.00
561 3 0.00
563 10 0.00
564 5 0.00
565 1 0.00
566 1 0.00
567 2 0.00
568 21 0.00
569 20 0.00
570 7 0.00
571 20 0.00
572 9 0.00
573 41 0.00
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.36
Consensus pattern (513 bp):
AAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTT
CCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTA
ATTTCATTTAAAAATCGGTAAATAATTTTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTT
ATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTC
ATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCGGGAAAATAAAAATATTTTTA
GAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCC
ACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGAT
AGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCC
Found at i:83178040 original size:19 final size:20
Alignment explanation
Indices: 83178002--83178045 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
83177992 TTTATGGTTT
*
83178002 TAAATATTTTTTGGTTAAAA
1 TAAATATTTTTTGGTAAAAA
*
83178022 TAAATATTTTTTTG-AAAAA
1 TAAATATTTTTTGGTAAAAA
83178041 TAAAT
1 TAAAT
83178046 TAAAATGCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (20 bp):
TAAATATTTTTTGGTAAAAA
Found at i:83179551 original size:19 final size:19
Alignment explanation
Indices: 83179527--83179569 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
83179517 TTTTATGGTT
*
83179527 TAAATATTTT-TTGTTAAAA
1 TAAATATTTTATTG-AAAAA
83179546 TAAATATTTTATTGAAAAA
1 TAAATATTTTATTGAAAAA
83179565 TAAAT
1 TAAAT
83179570 TAAAATGCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.86
20 3 0.14
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.47
Consensus pattern (19 bp):
TAAATATTTTATTGAAAAA
Found at i:83185955 original size:37 final size:37
Alignment explanation
Indices: 83185914--83185987 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
83185904 ACAGAGGCTG
* *
83185914 TATAAGTTTAAACAATTAATTGCAAAATTATAATTAA
1 TATAAGCTTAAACAATTAATTGCAAAAGTATAATTAA
83185951 TATAAGCTTAAACAATTAATTGCAAAAGTATAATTAA
1 TATAAGCTTAAACAATTAATTGCAAAAGTATAATTAA
83185988 CAATTTGATG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.51, C:0.07, G:0.07, T:0.35
Consensus pattern (37 bp):
TATAAGCTTAAACAATTAATTGCAAAAGTATAATTAA
Found at i:83186157 original size:50 final size:50
Alignment explanation
Indices: 83186096--83186203 Score: 189
Period size: 50 Copynumber: 2.2 Consensus size: 50
83186086 TTACCTAATG
83186096 ATGTGCTCAACTCTGCTCAGTTCAACAGCCTTTCAGATTTATTCTGACTA
1 ATGTGCTCAACTCTGCTCAGTTCAACAGCCTTTCAGATTTATTCTGACTA
* * *
83186146 ATGTGCTCAACTCTGCTTAGTTCAACAGCCTTTCGGATTTATTCTGACTG
1 ATGTGCTCAACTCTGCTCAGTTCAACAGCCTTTCAGATTTATTCTGACTA
83186196 ATGTGCTC
1 ATGTGCTC
83186204 CGTTTTGATT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (50 bp):
ATGTGCTCAACTCTGCTCAGTTCAACAGCCTTTCAGATTTATTCTGACTA
Found at i:83195748 original size:7 final size:7
Alignment explanation
Indices: 83195738--83195845 Score: 69
Period size: 7 Copynumber: 14.6 Consensus size: 7
83195728 TTTTATATAC
83195738 TAATAAA
1 TAATAAA
83195745 TAATAAA
1 TAATAAA
83195752 TAATAAA
1 TAATAAA
*
83195759 TTAATATA
1 -TAATAAA
83195767 TAATAAA
1 TAATAAA
**
83195774 -AGGAAGA
1 TAATAA-A
*
83195781 TAATATA
1 TAATAAA
83195788 TAATAATA
1 TAATAA-A
*
83195796 TATGATAAG
1 TA--ATAAA
83195805 TAATAAAA
1 TAAT-AAA
83195813 TATATAAA
1 TA-ATAAA
83195821 TAA-AATA
1 TAATAA-A
83195828 TAATGAAA
1 TAAT-AAA
83195836 T-ATAAA
1 TAATAAA
83195842 TAAT
1 TAAT
83195846 TCAATAAATA
Statistics
Matches: 79, Mismatches: 10, Indels: 24
0.70 0.09 0.21
Matches are distributed among these distances:
6 9 0.11
7 38 0.48
8 22 0.28
9 6 0.08
10 4 0.05
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (7 bp):
TAATAAA
Found at i:83195769 original size:15 final size:14
Alignment explanation
Indices: 83195732--83195867 Score: 62
Period size: 15 Copynumber: 9.1 Consensus size: 14
83195722 TTTAATTTTT
83195732 ATATACTAATAAATA
1 ATATA-TAATAAATA
*
83195747 ATAAATAATAAATTA
1 ATATATAATAAA-TA
*
83195762 ATATATAATAAAAGGA
1 ATATATAAT-AAA-TA
*
83195778 AGATA-ATATATAATA
1 ATATATA-ATA-AATA
* *
83195793 ATATATGATAAGTA
1 ATATATAATAAATA
*
83195807 ATAAAATATATAAATA
1 AT-ATATA-ATAAATA
*
83195823 AAATATAATGAAAT-
1 ATATATAAT-AAATA
* *
83195837 ATAAATAATTCAATA
1 ATATATAA-TAAATA
83195852 A-ATATCATATAAATA
1 ATATAT-A-ATAAATA
83195867 A
1 A
83195868 GGATAGTATA
Statistics
Matches: 90, Mismatches: 19, Indels: 24
0.68 0.14 0.18
Matches are distributed among these distances:
14 26 0.29
15 44 0.49
16 20 0.22
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (14 bp):
ATATATAATAAATA
Found at i:83195773 original size:29 final size:29
Alignment explanation
Indices: 83195732--83195867 Score: 91
Period size: 29 Copynumber: 4.5 Consensus size: 29
83195722 TTTAATTTTT
83195732 ATATACTAATAAATAATAAATAATAAATTA
1 ATATA-TAATAAATAATAAATAATAAATTA
** *
83195762 ATATATAATAAA-AGGAAGATAATATATAATA
1 ATATATAATAAATAATAA-ATAATA-A-ATTA
* *
83195793 ATATATGATAAGTAATAAAATATATAAA-TA
1 ATATATAATAAATAAT-AAATA-ATAAATTA
* * *
83195823 AAATATAATGAAAT-ATAAATAATTCAATAA
1 ATATATAAT-AAATAATAAATAA-TAAATTA
83195853 ATATCAT-ATAAATAA
1 ATAT-ATAATAAATAA
83195868 GGATAGTATA
Statistics
Matches: 82, Mismatches: 13, Indels: 22
0.70 0.11 0.19
Matches are distributed among these distances:
28 4 0.05
29 25 0.30
30 24 0.29
31 19 0.23
32 5 0.06
33 5 0.06
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (29 bp):
ATATATAATAAATAATAAATAATAAATTA
Found at i:83195795 original size:10 final size:10
Alignment explanation
Indices: 83195731--83195845 Score: 60
Period size: 10 Copynumber: 11.1 Consensus size: 10
83195721 ATTTAATTTT
*
83195731 TATATACTAA
1 TATATAATAA
*
83195741 TAAATAATAA
1 TATATAATAA
83195751 -ATAATAAATTAA
1 TAT-AT-AA-TAA
83195763 TATATAATAA
1 TATATAATAA
* *
83195773 AAGGA-AGATAA
1 TA-TATA-ATAA
83195784 TATATAATAA
1 TATATAATAA
*
83195794 TATATGATAA
1 TATATAATAA
83195804 GTA-ATAA-AA
1 -TATATAATAA
83195813 TATATAAATAA
1 TATAT-AATAA
*
83195824 AATATAATGAA
1 TATATAAT-AA
83195835 -ATATAAATAA
1 TATAT-AATAA
83195845 T
1 T
83195846 TCAATAAATA
Statistics
Matches: 81, Mismatches: 10, Indels: 27
0.69 0.08 0.23
Matches are distributed among these distances:
8 2 0.02
9 5 0.06
10 43 0.53
11 24 0.30
12 5 0.06
13 2 0.02
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.32
Consensus pattern (10 bp):
TATATAATAA
Found at i:83196079 original size:27 final size:28
Alignment explanation
Indices: 83196038--83196098 Score: 79
Period size: 27 Copynumber: 2.2 Consensus size: 28
83196028 ATGTATAATA
* *
83196038 ATATAAATAATATAATGGATAATA-TAT
1 ATATAAATAAAATAATAGATAATATTAT
* *
83196065 ATATAAATAAAATAATATATAATATTTT
1 ATATAAATAAAATAATAGATAATATTAT
83196093 ATATAA
1 ATATAA
83196099 CTAGTATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 21 0.72
28 8 0.28
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.39
Consensus pattern (28 bp):
ATATAAATAAAATAATAGATAATATTAT
Found at i:83197707 original size:44 final size:44
Alignment explanation
Indices: 83197659--83198196 Score: 556
Period size: 44 Copynumber: 12.2 Consensus size: 44
83197649 AAACTCAGGA
* * * * * *
83197659 ACGCCAAACCCGTTATCTTCGATCTGTTCTCTGACAAAACAAAG
1 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAG
* * * *
83197703 ACGCCAAATCTGCTATTTTCGATTTGCTCCCTGAT-AATACAGAG
1 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTG-TCAATACAGAG
* ** * ** *
83197747 ATGCCAAATCTACTATCTTCGATCTGCTCACTAACAATACAGAA
1 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAG
* * ** * *
83197791 ATGCCAAATATACTATCTTCGATCTGCTCTTTGTCAATACAGAA
1 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAG
* ** *
83197835 ACGCCAAATCTGCTATCTTTTATCTACTCTCTGTCAATACAGAG
1 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAG
* * *
83197879 ACGCCAAATCTGCTATCTTTGATCTGCTCTCTGTCAACACAGAG
1 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAG
* * *
83197923 ATGCCAAATCTGTCATCTTCGATCTGCTCTCTGTCAACACAGAG
1 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAG
* * *
83197967 ACGCCAAATCTGTTATCTTTGATCTGCTCTCTGACCATACAGAG
1 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAG
* * *
83198011 ACGCCAAATCTGTCATCTTCAATCTGCTCTCTGTCAACACAGAG
1 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAG
* * * * * * *
83198055 AAGCCAAATCTGTCATCTTCTATCTACTCTTTGTCAACACAAAG
1 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAG
83198099 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAG
1 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAG
* * * ** * **
83198143 ATGCCAAATCTGCTATTTTTTATTTGCTCTCTAACAATACAGAG
1 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAG
**
83198187 ATTCCAAATC
1 ACGCCAAATC
83198197 AGCTATCGGT
Statistics
Matches: 421, Mismatches: 71, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
44 421 1.00
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (44 bp):
ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAG
Found at i:83210175 original size:7 final size:7
Alignment explanation
Indices: 83210165--83210272 Score: 51
Period size: 7 Copynumber: 14.6 Consensus size: 7
83210155 TTTTATATAC
83210165 TAATAAA
1 TAATAAA
83210172 TAATAAA
1 TAATAAA
*
83210179 TAATGAAT
1 TAAT-AAA
*
83210187 TAATATA
1 TAATAAA
83210194 TAATAAA
1 TAATAAA
**
83210201 -AGGAAGA
1 TAATAA-A
*
83210208 TAATATA
1 TAATAAA
83210215 TAATAATA
1 TAATAA-A
* *
83210223 TATGCTAAG
1 TA--ATAAA
83210232 TAATAAAA
1 TAAT-AAA
83210240 TATATAAA
1 TA-ATAAA
83210248 TAA-AATA
1 TAATAA-A
83210255 TAATGAAA
1 TAAT-AAA
83210263 T-ATAAA
1 TAATAAA
83210269 TAAT
1 TAAT
83210273 TCAATAAATA
Statistics
Matches: 75, Mismatches: 14, Indels: 24
0.66 0.12 0.21
Matches are distributed among these distances:
6 9 0.12
7 35 0.47
8 22 0.29
9 6 0.08
10 3 0.04
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.31
Consensus pattern (7 bp):
TAATAAA
Found at i:83210469 original size:21 final size:22
Alignment explanation
Indices: 83210445--83210501 Score: 62
Period size: 24 Copynumber: 2.5 Consensus size: 22
83210435 TAATAAAATT
*
83210445 TATAAATAAAATGTATAATA-A
1 TATAAATAAAATGGATAATATA
*
83210466 TATAAACATTATAATGGATAATATA
1 TAT-AA-A-TAAAATGGATAATATA
83210491 TATAAATAAAA
1 TATAAATAAAA
83210502 AAATATATAC
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
21 3 0.10
22 6 0.21
23 2 0.07
24 14 0.48
25 4 0.14
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (22 bp):
TATAAATAAAATGGATAATATA
Found at i:83212907 original size:66 final size:66
Alignment explanation
Indices: 83212793--83212917 Score: 164
Period size: 66 Copynumber: 1.9 Consensus size: 66
83212783 GTTAGTAGCC
* * *
83212793 TCACACAGCCTAGCACATAGGCGTGTGGCTTGCATGTGTCTCGCAAGTTAGTATGCTCATTATTT
1 TCACACAGCCTAGCACACAGGCGTGTGGCTTGCATGTGACTCGCAAGTTAGTAAGCTCATTATTT
83212858 T
66 T
* * *
83212859 TCACACAGCCTAGCACACGGGCGTGTGGCTTGACCGTGTGAC-C-TAAGTTAGTAAGCTCA
1 TCACACAGCCTAGCACACAGGCGTGTGGCTTG--CATGTGACTCGCAAGTTAGTAAGCTCA
83212918 CTAGTTTGAA
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
66 44 0.86
67 1 0.02
68 6 0.12
ACGTcount: A:0.22, C:0.25, G:0.25, T:0.28
Consensus pattern (66 bp):
TCACACAGCCTAGCACACAGGCGTGTGGCTTGCATGTGACTCGCAAGTTAGTAAGCTCATTATTT
T
Found at i:83213030 original size:54 final size:54
Alignment explanation
Indices: 83212948--83213060 Score: 226
Period size: 54 Copynumber: 2.1 Consensus size: 54
83212938 GACACGGGCG
83212948 TGTGTCCCCATTTCGAATGCCCAAATGGCCTGAGGCACGGGCGTGCCTCTTGGC
1 TGTGTCCCCATTTCGAATGCCCAAATGGCCTGAGGCACGGGCGTGCCTCTTGGC
83213002 TGTGTCCCCATTTCGAATGCCCAAATGGCCTGAGGCACGGGCGTGCCTCTTGGC
1 TGTGTCCCCATTTCGAATGCCCAAATGGCCTGAGGCACGGGCGTGCCTCTTGGC
83213056 TGTGT
1 TGTGT
83213061 GAGACACACG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.14, C:0.30, G:0.30, T:0.26
Consensus pattern (54 bp):
TGTGTCCCCATTTCGAATGCCCAAATGGCCTGAGGCACGGGCGTGCCTCTTGGC
Found at i:83214819 original size:18 final size:18
Alignment explanation
Indices: 83214798--83214832 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
83214788 ATTGGGGTTG
83214798 ATAGATTGTGAGATGAAA
1 ATAGATTGTGAGATGAAA
83214816 ATAGATTGTGAGATGAA
1 ATAGATTGTGAGATGAA
83214833 CACATAATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.29, T:0.29
Consensus pattern (18 bp):
ATAGATTGTGAGATGAAA
Found at i:83214964 original size:43 final size:43
Alignment explanation
Indices: 83214893--83215078 Score: 232
Period size: 43 Copynumber: 4.3 Consensus size: 43
83214883 TTGGTATATG
* * *
83214893 CAATCATGCACTATGTGTGACAGTATATTTTCTTC-GATTTATC
1 CAATGATGCACTATGTGTGCCAGCATATTTTCTTCAG-TTTATC
*
83214936 CGATGATGCACTATGTGTGCCAGCATATTTTCTTCAGTTTATC
1 CAATGATGCACTATGTGTGCCAGCATATTTTCTTCAGTTTATC
* *
83214979 CAATGATGCACTATGTGTGCTAGTC-TATTTTCTTCAGCTTATC
1 CAATGATGCACTATGTGTGCCAG-CATATTTTCTTCAGTTTATC
* * * ** *
83215022 CAATGATGCACTATATGTTCCAGTATAGATACTTCAGTTTATC
1 CAATGATGCACTATGTGTGCCAGCATATTTTCTTCAGTTTATC
83215065 CAATGATGCACTAT
1 CAATGATGCACTAT
83215079 ATATGCTAGT
Statistics
Matches: 125, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
43 123 0.98
44 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (43 bp):
CAATGATGCACTATGTGTGCCAGCATATTTTCTTCAGTTTATC
Found at i:83215057 original size:86 final size:85
Alignment explanation
Indices: 83214893--83215150 Score: 295
Period size: 86 Copynumber: 3.0 Consensus size: 85
83214883 TTGGTATATG
* * * *
83214893 CAATCATGCACTATGTGTGAC-AGTATATTTTCTTCGATTTATCCGATGATGCACTATGTGTGCC
1 CAATGATGCACTATGTGTG-CTAGTATATTTTCTTCG-TTTATCCAATGATGCACTATATGTTCC
* ** *
83214957 AGCATATTTTCTTCAGTTTATC
64 AGTATAGATACTTCAGTTTATC
* *
83214979 CAATGATGCACTATGTGTGCTAGTCTATTTTCTTCAGCTTATCCAATGATGCACTATATGTTCCA
1 CAATGATGCACTATGTGTGCTAGTATATTTTCTTC-GTTTATCCAATGATGCACTATATGTTCCA
83215044 GTATAGATACTTCAGTTTATC
65 GTATAGATACTTCAGTTTATC
* * ** * * * *
83215065 CAATGATGCACTATATATGCTAGTATAGATACTTTGGTTTATCTAATGATGCACTATAT-TTGCT
1 CAATGATGCACTATGTGTGCTAGTATATTTTC-TTCGTTTATCCAATGATGCACTATATGTT-CC
83215129 AGTATAGATACTTCAGTTTATC
64 AGTATAGATACTTCAGTTTATC
83215151 TGATGATGAG
Statistics
Matches: 148, Mismatches: 20, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
85 3 0.02
86 142 0.96
87 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (85 bp):
CAATGATGCACTATGTGTGCTAGTATATTTTCTTCGTTTATCCAATGATGCACTATATGTTCCAG
TATAGATACTTCAGTTTATC
Found at i:83215158 original size:43 final size:43
Alignment explanation
Indices: 83214930--83215150 Score: 262
Period size: 43 Copynumber: 5.1 Consensus size: 43
83214920 TTTTCTTCGA
* * * * ** *
83214930 TTTATCCGATGATGCACTATGTGTGCCAGCATATTTTCTTCAG
1 TTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTCAG
* * ** *
83214973 TTTATCCAATGATGCACTATGTGTGCTAGTCTATTTTCTTCAG
1 TTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTCAG
* * *
83215016 CTTATCCAATGATGCACTATATGTTCCAGTATAGATACTTCAG
1 TTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTCAG
* **
83215059 TTTATCCAATGATGCACTATATATGCTAGTATAGATACTTTGG
1 TTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTCAG
* *
83215102 TTTATCTAATGATGCACTATATTTGCTAGTATAGATACTTCAG
1 TTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTCAG
83215145 TTTATC
1 TTTATC
83215151 TGATGATGAG
Statistics
Matches: 156, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 156 1.00
ACGTcount: A:0.26, C:0.18, G:0.15, T:0.41
Consensus pattern (43 bp):
TTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTCAG
Found at i:83215233 original size:43 final size:43
Alignment explanation
Indices: 83215180--83215279 Score: 157
Period size: 43 Copynumber: 2.3 Consensus size: 43
83215170 TTATTCGATG
* *
83215180 ATGCACTGTATGTGCCAATATAGATATTTCAGA-TTATCTGATT
1 ATGCATTGTATGTGCCAATATAGATACTTCA-ATTTATCTGATT
*
83215223 ATGCATTGTATGTGCCAGTATAGATACTTCAATTTATCTGATT
1 ATGCATTGTATGTGCCAATATAGATACTTCAATTTATCTGATT
83215266 ATGCATTGTATGTG
1 ATGCATTGTATGTG
83215280 TTAGGATAAT
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
42 1 0.02
43 52 0.98
ACGTcount: A:0.28, C:0.13, G:0.18, T:0.41
Consensus pattern (43 bp):
ATGCATTGTATGTGCCAATATAGATACTTCAATTTATCTGATT
Found at i:83215247 original size:110 final size:110
Alignment explanation
Indices: 83215054--83215264 Score: 271
Period size: 110 Copynumber: 1.9 Consensus size: 110
83215044 GTATAGATAC
* * * *
83215054 TTCAGTTTATCCAATGATGCACTATATATGCTAGTATAGATACTTTGGTTTATCTAATGATGCAC
1 TTCAGTTTATCCAATGATGCACTATATATGCCAATATAGATACTTTAGATTATCTAATGATGCAC
* * *
83215119 TATATTTGCTAGTATAGATACTTCAGTTTATCTGATGATGAGATG
66 TATATGTGCCAGTATAGATACTTCAATTTATCTGATGATGAGATG
* * * * * *
83215164 TTCAGTTTATTCGATGATGCACTGTATGTGCCAATATAGATA-TTTCAGATTATCTGATTATGCA
1 TTCAGTTTATCCAATGATGCACTATATATGCCAATATAGATACTTT-AGATTATCTAATGATGCA
* *
83215228 TTGTATGTGCCAGTATAGATACTTCAATTTATCTGAT
65 CTATATGTGCCAGTATAGATACTTCAATTTATCTGAT
83215265 TATGCATTGT
Statistics
Matches: 85, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
109 3 0.04
110 82 0.96
ACGTcount: A:0.28, C:0.13, G:0.17, T:0.41
Consensus pattern (110 bp):
TTCAGTTTATCCAATGATGCACTATATATGCCAATATAGATACTTTAGATTATCTAATGATGCAC
TATATGTGCCAGTATAGATACTTCAATTTATCTGATGATGAGATG
Found at i:83219388 original size:47 final size:47
Alignment explanation
Indices: 83219290--83219417 Score: 166
Period size: 47 Copynumber: 2.7 Consensus size: 47
83219280 AATCGATAAG
* ** *
83219290 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCGGAG
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCAAAA
* * *
83219337 TACCTATACCATGGCCTGTAGCCAAATCAAGGTAACTCCTCTCAAAA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCAAAA
* * *
83219384 TACCTATATCAAGGCCCGTAGCCAAATCTAGGTA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTA
83219418 TTATTCCACC
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (47 bp):
TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCAAAA
Found at i:83230512 original size:27 final size:27
Alignment explanation
Indices: 83230477--83230530 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
83230467 TTGGAAGAAC
*
83230477 AAAAAAACTAAATTTATGGGGGAGAGA
1 AAAAAAACTAAATTTAAGGGGGAGAGA
83230504 AAAAAAACTAAATTTAAGGGGGAGAGA
1 AAAAAAACTAAATTTAAGGGGGAGAGA
83230531 GTGTTTACTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.54, C:0.04, G:0.26, T:0.17
Consensus pattern (27 bp):
AAAAAAACTAAATTTAAGGGGGAGAGA
Found at i:83230645 original size:20 final size:20
Alignment explanation
Indices: 83230622--83230659 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
83230612 TAAATTCTAA
*
83230622 AAGATAAATACAAATAAAAT
1 AAGATAAATAAAAATAAAAT
*
83230642 AAGATAATTAAAAATAAA
1 AAGATAAATAAAAATAAA
83230660 TCCTAAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.71, C:0.03, G:0.05, T:0.21
Consensus pattern (20 bp):
AAGATAAATAAAAATAAAAT
Found at i:83231313 original size:10 final size:11
Alignment explanation
Indices: 83231285--83231313 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
83231275 ATATCTTCCA
83231285 TTTTTTTTCTC
1 TTTTTTTTCTC
83231296 TTTTTTTT-TC
1 TTTTTTTTCTC
83231306 TTTTTTTT
1 TTTTTTTT
83231314 AATTTATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (11 bp):
TTTTTTTTCTC
Found at i:83232450 original size:16 final size:17
Alignment explanation
Indices: 83232418--83232453 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
83232408 CATTAAGATA
83232418 AAATAATAAAGAAAAAT
1 AAATAATAAAGAAAAAT
*
83232435 AAATAA-AAAGAGAAAT
1 AAATAATAAAGAAAAAT
83232451 AAA
1 AAA
83232454 GAGAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.78, C:0.00, G:0.08, T:0.14
Consensus pattern (17 bp):
AAATAATAAAGAAAAAT
Found at i:83247567 original size:21 final size:18
Alignment explanation
Indices: 83247541--83247583 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 18
83247531 ATATCATAAA
83247541 AAATAAAAGTAATTATGAATT
1 AAATAAAA--AATTA-GAATT
83247562 AAAT-AAAAATTAGAATT
1 AAATAAAAAATTAGAATT
83247579 AAATA
1 AAATA
83247584 TAATTTCGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 9 0.43
18 5 0.24
20 3 0.14
21 4 0.19
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (18 bp):
AAATAAAAAATTAGAATT
Found at i:83248972 original size:19 final size:20
Alignment explanation
Indices: 83248944--83248986 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 20
83248934 AATCTTTAAG
*
83248944 GATATGCAATCTT-AGATAT
1 GATATACAATCTTAAGATAT
83248963 GATATACAATCTTGAAGATAT
1 GATATACAATCTT-AAGATAT
83248984 GAT
1 GAT
83248987 CTTGTAATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 12 0.57
21 9 0.43
ACGTcount: A:0.40, C:0.09, G:0.16, T:0.35
Consensus pattern (20 bp):
GATATACAATCTTAAGATAT
Found at i:83254588 original size:8 final size:8
Alignment explanation
Indices: 83254575--83254645 Score: 74
Period size: 8 Copynumber: 8.6 Consensus size: 8
83254565 CTATTTCAAA
83254575 AAAAAAAG
1 AAAAAAAG
83254583 AAAAAAAG
1 AAAAAAAG
83254591 AAAAGAAAAAG
1 --AA-AAAAAG
*
83254602 AGAAAAAG
1 AAAAAAAG
83254610 AAAAAAA-
1 AAAAAAAG
*
83254617 AGAAAAAG
1 AAAAAAAG
83254625 -AAAAAAG
1 AAAAAAAG
83254632 AGAAAAAAG
1 A-AAAAAAG
83254641 AAAAA
1 AAAAA
83254646 TGAAGAGGCC
Statistics
Matches: 53, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
7 12 0.23
8 24 0.45
9 9 0.17
10 2 0.04
11 6 0.11
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:83254588 original size:9 final size:9
Alignment explanation
Indices: 83254574--83254639 Score: 61
Period size: 9 Copynumber: 7.7 Consensus size: 9
83254564 TCTATTTCAA
83254574 AAAAAAAAG
1 AAAAAAAAG
83254583 -AAAAAAAG
1 AAAAAAAAG
83254591 AAAAGAAAA-
1 AAAA-AAAAG
*
83254600 AGAGAAAAAG
1 A-AAAAAAAG
83254610 AAAAAAAAG
1 AAAAAAAAG
83254619 ---AAAAAG
1 AAAAAAAAG
*
83254625 AAAAAAGAG
1 AAAAAAAAG
83254634 AAAAAA
1 AAAAAA
83254640 GAAAAATGAA
Statistics
Matches: 47, Mismatches: 3, Indels: 14
0.73 0.05 0.22
Matches are distributed among these distances:
6 6 0.13
8 8 0.17
9 26 0.55
10 7 0.15
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:83254594 original size:13 final size:13
Alignment explanation
Indices: 83254572--83254637 Score: 80
Period size: 14 Copynumber: 4.8 Consensus size: 13
83254562 CTTCTATTTC
83254572 AAAAAA-AAAAGA
1 AAAAAAGAAAAGA
83254584 AAAAAAGAAAAGA
1 AAAAAAGAAAAGA
*
83254597 AAAAGAGAAAAAGAA
1 AAAAAAG-AAAAG-A
83254612 AAAAAAGAAAAAGA
1 AAAAAAG-AAAAGA
83254626 AAAAAGAGAAAA
1 AAAAA-AGAAAA
83254638 AAGAAAAATG
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
12 6 0.12
13 12 0.25
14 15 0.31
15 15 0.31
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (13 bp):
AAAAAAGAAAAGA
Found at i:83254620 original size:15 final size:15
Alignment explanation
Indices: 83254572--83254645 Score: 93
Period size: 15 Copynumber: 5.1 Consensus size: 15
83254562 CTTCTATTTC
83254572 AAAAA-AAAAAG-AA
1 AAAAAGAAAAAGAAA
83254585 AAAAAG-AAAAG-AA
1 AAAAAGAAAAAGAAA
*
83254598 AAAGAGAAAAAGAAA
1 AAAAAGAAAAAGAAA
83254613 AAAAAGAAAAAGAAA
1 AAAAAGAAAAAGAAA
*
83254628 AAAGAGAAAAAAGAAA
1 AAAAAG-AAAAAGAAA
83254644 AA
1 AA
83254646 TGAAGAGGCC
Statistics
Matches: 54, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
13 17 0.31
14 5 0.09
15 21 0.39
16 11 0.20
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAAAGAAA
Found at i:83254645 original size:6 final size:6
Alignment explanation
Indices: 83254572--83254629 Score: 59
Period size: 6 Copynumber: 9.8 Consensus size: 6
83254562 CTTCTATTTC
* *
83254572 AAAAA- AAAAAG AAAAAA AGAAAAG AAAAAG AGAAAA- AGAAA- AAAAAG
1 AAAAAG AAAAAG AAAAAG A-AAAAG AAAAAG A-AAAAG AAAAAG AAAAAG
83254619 AAAAAG AAAAA
1 AAAAAG AAAAA
83254630 AGAGAAAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
5 12 0.27
6 24 0.53
7 9 0.20
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:83255687 original size:41 final size:42
Alignment explanation
Indices: 83255631--83256025 Score: 172
Period size: 41 Copynumber: 9.5 Consensus size: 42
83255621 AATATGCAGA
83255631 TCTT-ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCG
1 TCTTAATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCG
* * * *
83255672 TCTTAATC-CCCTAAGCAGTA-TGGTAACAGGT-TAA-ATTTGCAG
1 TCTTAATCTCCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CT-C-G
* * * *
83255714 ACTTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACCCG
1 TCTTAATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCG
* * * * * *
83255756 CCTTAATC-CCCTAAGTAGTAG-GGTAACAGGT-TAA-ATTTGCAG
1 TCTTAATCTCCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CT-C-G
* *
83255798 ATCTT-ATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACTCG
1 -TCTTAATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCG
* ** * *
83255840 CCTTAATC-CCCTAAGCAGTAG-GGTAATAGGTTCGCAGA----
1 TCTTAATCTCCCTAAGCAGTAGTGG-AGCA-GATCGAAGACTCG
* *
83255878 TCTT-ATCTCCCTAAGCAGTAGCGGAGCAGATCGACGACGATTCG
1 TCTTAATCTCCCTAAGCAGTAGTGGAGCAGATCGA--A-GACTCG
* * * * *
83255922 CCTTAATC-CCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTCAG
1 TCTTAATCTCCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CTC-G
* *
83255963 ATCTT-ACCTCCCTAAGCAGTAGTGGAGCAAATCGAAGAC-CGG
1 -TCTTAATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTC-G
*
83256005 CCTTAATC-CCCTAAGCAGTAG
1 TCTTAATCTCCCTAAGCAGTAG
83256026 GGTAACAGGT
Statistics
Matches: 264, Mismatches: 50, Indels: 80
0.67 0.13 0.20
Matches are distributed among these distances:
37 7 0.03
38 18 0.07
39 6 0.02
40 17 0.06
41 80 0.30
42 55 0.21
43 44 0.17
44 32 0.12
45 5 0.02
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.25
Consensus pattern (42 bp):
TCTTAATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCG
Found at i:83255735 original size:84 final size:84
Alignment explanation
Indices: 83255587--83256113 Score: 741
Period size: 84 Copynumber: 6.3 Consensus size: 84
83255577 AAAATTCAGT
*
83255587 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATATGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
83255652 TGGAGCAGATCGAAGACTC
66 TGGAGCAGATCGAAGACTC
* * *
83255671 GTCTTAATCCCCTAAGCAGTATGGTAACAGGTTAAATTTGCAGA-CTTTATCTCCCTAAGTAGTA
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATC-TTATCTCCCTAAGCAGTA
*
83255735 GTGGAGCAGATCGAAGACCC
65 GTGGAGCAGATCGAAGACTC
*
83255755 GCCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
* *
83255820 TGGAGTAGATTGAAGACTC
66 TGGAGCAGATCGAAGACTC
* *
83255839 GCCTTAATCCCCTAAGCAGTAGGGTAATAGG-----TTCGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
* *
83255899 CGGAGCAGATCGACGACGATTC
66 TGGAGCAGATCGA--A-GACTC
*
83255921 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTT-CAGATCTTACCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
*
83255985 TGGAGCAAATCGAAGAC-C
66 TGGAGCAGATCGAAGACTC
*
83256003 GGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTA--TCCCTAAGCAGTA
1 -GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
83256066 GCGGAGCAGATCGAAGACGATGC
65 GTGGAGCAGATCGAAGAC--T-C
* * *
83256089 ACCTTTACCCCCTAAGCAGTAGGGT
1 GCCTTAATCCCCTAAGCAGTAGGGT
83256114 CCAAGATGAT
Statistics
Matches: 397, Mismatches: 30, Indels: 31
0.87 0.07 0.07
Matches are distributed among these distances:
79 38 0.10
81 1 0.00
82 64 0.16
83 42 0.11
84 191 0.48
85 23 0.06
86 36 0.09
87 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (84 bp):
GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
TGGAGCAGATCGAAGACTC
Found at i:83256058 original size:41 final size:41
Alignment explanation
Indices: 83255930--83256066 Score: 120
Period size: 41 Copynumber: 3.3 Consensus size: 41
83255920 CGCCTTAATC
83255930 CCCTAAGCAGTAGGGTAACAGGTTAAATTT-CAGATCTTACCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTA--T
* ** ** * * **
83255972 CCCTAAGCAGTAGTGG-AGCAAATCGAA--GACCGGCCTTAAT
1 CCCTAAGCAGTAG-GGTAACAGGTTAAATTTACAGATCTT-AT
83256012 CCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTAT
1 -CCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTAT
83256054 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
83256067 CGGAGCAGAT
Statistics
Matches: 70, Mismatches: 18, Indels: 15
0.68 0.17 0.15
Matches are distributed among these distances:
40 3 0.04
41 37 0.53
42 22 0.31
43 8 0.11
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (41 bp):
CCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTAT
Found at i:83256843 original size:19 final size:19
Alignment explanation
Indices: 83256819--83256880 Score: 88
Period size: 19 Copynumber: 3.2 Consensus size: 19
83256809 AATCTTTAAG
*
83256819 GATATGCAGTCTTAAATAT
1 GATATGCAATCTTAAATAT
*
83256838 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAAATAT
83256857 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT-AA-ATAT
83256878 GAT
1 GAT
83256881 CTTGTAATCT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
19 30 0.79
20 1 0.03
21 7 0.18
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAAATAT
Found at i:83262358 original size:76 final size:75
Alignment explanation
Indices: 83262217--83262705 Score: 310
Period size: 76 Copynumber: 6.5 Consensus size: 75
83262207 TTTAAAACGG
* * * * * * * * *
83262217 ATTCAACTTTTGATAAAATGAAAACTAAAAGGACCTCGAC-AGCAA-CCTTGAGGCTCGATCTAT
1 ATTCGACTTTTGATAAAATGAAAACTGAAAGAACCTCAACGA-TAATCC-CGAGGCTTGACCCAT
83262280 TTTTGAAAATCA
64 TTTTGAAAATCA
* * * ** * *
83262292 ATTCGACTTTTAATACAATGAAACATTGAAAGGTCCTCGATGATAATCCCGAGGCTTGACCCATT
1 ATTCGACTTTTGATAAAATGAAA-ACTGAAAGAACCTCAACGATAATCCCGAGGCTTGACCCATT
*
83262357 TTTGAAAA-CGG
65 TTTGAAAATC-A
* * * *
83262368 ATTCGACTTTTGATACAAA-GAAAACT-AAAAAGACCCCAACGATGATCTCGAGGCTTGACCCAT
1 ATTCGACTTTTGATA-AAATGAAAACTGAAAGA-ACCTCAACGATAATCCCGAGGCTTGACCCAT
* *
83262431 TTTTAAAAAATTA
64 TTTT-GAAAATCA
* * * * * ** **
83262444 ATTTGACTTTTGATAAAATGACAACTGAAAG-ATCTCGATGGCAATCTTGAGGCTTGACCCATTT
1 ATTCGACTTTTGATAAAATGAAAACTGAAAGAACCTCAACGATAATCCCGAGGCTTGACCCATTT
83262508 TTGAAAA-CGA
66 TTGAAAATC-A
* * * * * *
83262518 ATTCGACATTTAATAAAATGAATAACTGAAATAACCTCAACAATAATCCCAAGGCTTGACTCATT
1 ATTCGACTTTTGATAAAATGAA-AACTGAAAGAACCTCAACGATAATCCCGAGGCTTGACCCATT
* *
83262583 TCTGAAAATAA
65 TTTGAAAATCA
* * * * ** * ** **
83262594 ATTTGACTTTTGATAAAATGAAAACT-AAAAAGACATCAATGGCAATCCTGAGGCTCAACATATT
1 ATTCGACTTTTGATAAAATGAAAACTGAAAGA-ACCTCAACGATAATCCCGAGGCTTGACCCATT
*
83262658 TTTAAAAAATCA
65 TTT-GAAAATCA
* * * * *
83262670 ATTCTACTTTTCATAAAATGACAATTGAAAGGACCT
1 ATTCGACTTTTGATAAAATGAAAACTGAAAGAACCT
83262706 TGACAGTAAT
Statistics
Matches: 314, Mismatches: 83, Indels: 33
0.73 0.19 0.08
Matches are distributed among these distances:
74 30 0.10
75 117 0.37
76 156 0.50
77 11 0.04
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (75 bp):
ATTCGACTTTTGATAAAATGAAAACTGAAAGAACCTCAACGATAATCCCGAGGCTTGACCCATTT
TTGAAAATCA
Found at i:83262661 original size:226 final size:226
Alignment explanation
Indices: 83262217--83262726 Score: 535
Period size: 226 Copynumber: 2.2 Consensus size: 226
83262207 TTTAAAACGG
* * * * *
83262217 ATTCAACTTTTGATAAAATGAAAACTAAAAGGACCTCGACAGCAACCTTGAGGCTCGATCTATTT
1 ATTCTACTTTTGATAAAATGACAACTGAAA-GACCTCGACAGCAACCTTGAGGCTCGACCCATTT
* * * ** * ** *
83262282 TTGAAAATCAATTCGACTTTTAATACAATGAAACATTGAAAGGTCCTCGATGATAATCCCGAGGC
65 TTGAAAATCAATTCGACATTTAATAAAATGAAACACTGAAAGAACCTCAACAATAATCCCAAGGC
* ** * **
83262347 TTGACCCATTTTTGAAAACGGATTCGACTTTTGATACAAAGAAAACTAAAAAGACCCCAACGATG
130 TTGACCCATTTCTGAAAACAAATTCGACTTTTGATACAAAGAAAACTAAAAAGACACCAACGACA
** * *
83262412 ATCTCGAGGCTTGACCCATTTTTAAAAAATTA
195 ATCTCGAGGCTCAACACATTTTTAAAAAATCA
* ** * *
83262444 ATT-TGACTTTTGATAAAATGACAACTGAAAGATCTCGATGGCAATCTTGAGGCTTGACCCATTT
1 ATTCT-ACTTTTGATAAAATGACAACTGAAAGACCTCGACAGCAACCTTGAGGCTCGACCCATTT
*
83262508 TTGAAAA-CGAATTCGACATTTAATAAAATGAATA-ACTGAAATAACCTCAACAATAATCCCAAG
65 TTGAAAATC-AATTCGACATTTAATAAAATGAA-ACACTGAAAGAACCTCAACAATAATCCCAAG
* * * * *
83262571 GCTTGACTCATTTCTGAAAATAAATTTGACTTTTGATA-AAATGAAAACTAAAAAGACATCAATG
128 GCTTGACCCATTTCTGAAAACAAATTCGACTTTTGATACAAA-GAAAACTAAAAAGACACCAACG
* *
83262635 GCAATC-CTGAGGCTCAACATATTTTTAAAAAATCA
192 ACAATCTC-GAGGCTCAACACATTTTTAAAAAATCA
* * * * * *
83262670 ATTCTACTTTTCATAAAATGACAATTGAAAGGACCTTGACAGTAATCTCGAGGCTCG
1 ATTCTACTTTTGATAAAATGACAACTGAAA-GACCTCGACAGCAACCTTGAGGCTCG
83262727 GCCCGGCCCA
Statistics
Matches: 230, Mismatches: 46, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
225 5 0.02
226 178 0.77
227 47 0.20
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.29
Consensus pattern (226 bp):
ATTCTACTTTTGATAAAATGACAACTGAAAGACCTCGACAGCAACCTTGAGGCTCGACCCATTTT
TGAAAATCAATTCGACATTTAATAAAATGAAACACTGAAAGAACCTCAACAATAATCCCAAGGCT
TGACCCATTTCTGAAAACAAATTCGACTTTTGATACAAAGAAAACTAAAAAGACACCAACGACAA
TCTCGAGGCTCAACACATTTTTAAAAAATCA
Found at i:83262724 original size:151 final size:151
Alignment explanation
Indices: 83262353--83262724 Score: 344
Period size: 151 Copynumber: 2.5 Consensus size: 151
83262343 AGGCTTGACC
* * * * * * * *
83262353 CATTTTTGAAAACGGATTCGACTTTTGATACAAA-GAA-AACT-AAAAAGACCCCAACGATGATC
1 CATTTTTAAAAACGAATTCGACATTTAATA-AAATGAACAACTGAAAGA-ACCTCAACAATAATC
* * * *
83262415 TCGAGGCTTGACCCATTTTTAAAAAATTAATTTGACTTTTGATAAAATGACAACTGAAAGATCTC
64 TCGAGGCTTGACCCATTTCTAAAAAATAAATTTGACTTTTGATAAAATGAAAACTAAAAGATCTC
* * ** *
83262480 GATGGCAATCTTGAGGCTTGACC
129 AATGGCAATCCTGAGGCTCAACA
* * * *
83262503 CATTTTTGAAAACGAATTCGACATTTAATAAAATGAATAACTGAAATAACCTCAACAATAATCCC
1 CATTTTTAAAAACGAATTCGACATTTAATAAAATGAACAACTGAAAGAACCTCAACAATAATCTC
* * *
83262568 AAGGCTTGACTCATTTCT-GAAAATAAATTTGACTTTTGATAAAATGAAAACTAAAAAGA-CATC
66 GAGGCTTGACCCATTTCTAAAAAATAAATTTGACTTTTGATAAAATGAAAACT-AAAAGATC-TC
83262631 AATGGCAATCCTGAGGCTCAACA
129 AATGGCAATCCTGAGGCTCAACA
* * * * * * ** *
83262654 TATTTTTAAAAAATC-AATTCTACTTTTCATAAAATG-ACAATTGAAAGGACCTTGACAGTAATC
1 CATTTTT-AAAAA-CGAATTCGACATTTAATAAAATGAACAACTGAAAGAACCTCAACAATAATC
83262717 TCGAGGCT
64 TCGAGGCT
83262725 CGGCCCGGCC
Statistics
Matches: 181, Mismatches: 34, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
149 3 0.02
150 62 0.34
151 89 0.49
152 26 0.14
153 1 0.01
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29
Consensus pattern (151 bp):
CATTTTTAAAAACGAATTCGACATTTAATAAAATGAACAACTGAAAGAACCTCAACAATAATCTC
GAGGCTTGACCCATTTCTAAAAAATAAATTTGACTTTTGATAAAATGAAAACTAAAAGATCTCAA
TGGCAATCCTGAGGCTCAACA
Found at i:83262948 original size:75 final size:74
Alignment explanation
Indices: 83262799--83262973 Score: 192
Period size: 75 Copynumber: 2.4 Consensus size: 74
83262789 CGAAGGCAAT
* * ** *
83262799 TCCGAAACTTAATCCATTTTT-GAGAAATGGATTCAACTTTTGATAAAAGACAACTAAAAGGACC
1 TCCGAGACTTGATCCATTTTTGGA-AAATATATTCAAATTTTGATAAAAGACAACTAAAAGGACC
83262863 TCAACAACAA
65 TCAACAACAA
* * * * *
83262873 TATCGAGGCTTGA-CCTATTTTTGGAAAATATATTCAAATTTTGATAAAAGGCAATTGAAAGGAC
1 T-CCGAGACTTGATCC-ATTTTTGGAAAATATATTCAAATTTTGATAAAAGACAACTAAAAGGAC
**
83262937 CTCAATGACAA
64 CTCAACAACAA
*
83262948 TCCGAGACTTGATCCATTTTTTGAAA
1 TCCGAGACTTGATCCATTTTTGGAAA
83262974 TAGTCTTGAC
Statistics
Matches: 82, Mismatches: 15, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
74 22 0.27
75 58 0.71
76 2 0.02
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.30
Consensus pattern (74 bp):
TCCGAGACTTGATCCATTTTTGGAAAATATATTCAAATTTTGATAAAAGACAACTAAAAGGACCT
CAACAACAA
Found at i:83263216 original size:30 final size:30
Alignment explanation
Indices: 83263175--83263241 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
83263165 GGGAAAATCC
* * *
83263175 AGAACTTCGACAAT-GAACGTGGATGAAACT
1 AGAAATTCGACAATGGAAC-TAGACGAAACT
*
83263205 AGAAATTCGACAATGGATCTAGACGAAACT
1 AGAAATTCGACAATGGAACTAGACGAAACT
83263235 AGAAATT
1 AGAAATT
83263242 TAAGAATGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 29 0.91
31 3 0.09
ACGTcount: A:0.43, C:0.15, G:0.21, T:0.21
Consensus pattern (30 bp):
AGAAATTCGACAATGGAACTAGACGAAACT
Found at i:83267595 original size:34 final size:34
Alignment explanation
Indices: 83267557--83267621 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
83267547 TCTAATACTA
83267557 TTATTGTAATAGGCTAAAGCCCACACTGATATTG
1 TTATTGTAATAGGCTAAAGCCCACACTGATATTG
* * *
83267591 TTATTGTAATGGGCTTAGGCCCACACTGATA
1 TTATTGTAATAGGCTAAAGCCCACACTGATA
83267622 CTGGACTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.32
Consensus pattern (34 bp):
TTATTGTAATAGGCTAAAGCCCACACTGATATTG
Found at i:83275149 original size:21 final size:21
Alignment explanation
Indices: 83275110--83275150 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
83275100 AAGTGTACTG
**
83275110 TACTGGCAGCTCTGTTGCAAT
1 TACTGGCAGCTCTACTGCAAT
83275131 TACTGGCAGCTCTACTGCAA
1 TACTGGCAGCTCTACTGCAA
83275151 ACACTGATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (21 bp):
TACTGGCAGCTCTACTGCAAT
Found at i:83275156 original size:21 final size:21
Alignment explanation
Indices: 83275111--83275156 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
83275101 AGTGTACTGT
** **
83275111 ACTGGCAGCTCTGTTGCAATT
1 ACTGGCAGCTCTACTGCAAAC
83275132 ACTGGCAGCTCTACTGCAAAC
1 ACTGGCAGCTCTACTGCAAAC
83275153 ACTG
1 ACTG
83275157 ATTAGTGTCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (21 bp):
ACTGGCAGCTCTACTGCAAAC
Found at i:83277059 original size:26 final size:28
Alignment explanation
Indices: 83277022--83277077 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 28
83277012 GAGAGAAAAG
*
83277022 AAGAGAAAGAAAT-TTTTTTTTTC-TAA
1 AAGAGAAAGAAATGATTTTTTTTCTTAA
*
83277048 AAGAGAAGGAAATGATTTTTTTTCTTAA
1 AAGAGAAAGAAATGATTTTTTTTCTTAA
83277076 AA
1 AA
83277078 TTTCTACTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 12 0.46
27 9 0.35
28 5 0.19
ACGTcount: A:0.43, C:0.04, G:0.14, T:0.39
Consensus pattern (28 bp):
AAGAGAAAGAAATGATTTTTTTTCTTAA
Found at i:83277772 original size:12 final size:12
Alignment explanation
Indices: 83277755--83277800 Score: 53
Period size: 12 Copynumber: 3.9 Consensus size: 12
83277745 TTAGATTTTA
83277755 TTATTATTATTG
1 TTATTATTATTG
83277767 TTATTATTCATT-
1 TTATTATT-ATTG
83277779 TTATTAGTTATTG
1 TTATTA-TTATTG
83277792 -TATT-TTATT
1 TTATTATTATT
83277801 TTCTTTGGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
10 5 0.16
12 21 0.68
13 5 0.16
ACGTcount: A:0.24, C:0.02, G:0.07, T:0.67
Consensus pattern (12 bp):
TTATTATTATTG
Found at i:83282965 original size:43 final size:43
Alignment explanation
Indices: 83282795--83282966 Score: 138
Period size: 43 Copynumber: 4.0 Consensus size: 43
83282785 CATAAGATTC
* * *
83282795 CGATATGTGATTTCATGTAAGACCACGTCTGGGA-AGTTGGCAT
1 CGATATTTGATTACATGTAAGACCACGTCTGAGACA-TTGGCAT
* * * * *
83282838 CGAT-TTAAGATTTACATGTAAGACCATGTCTGTGACATCGACAT
1 CGATATT-TGA-TTACATGTAAGACCACGTCTGAGACATTGGCAT
*** * * *
83282882 CG-TATTTGATTTTGTGTAAGACTC-TGTCT-AGGAAAGTGGCAT
1 CGATATTTGATTACATGTAAGAC-CACGTCTGA-GACATTGGCAT
83282924 CGATATTTGATTACATGTAAGACCACGTCTGAGACATTGGCAT
1 CGATATTTGATTACATGTAAGACCACGTCTGAGACATTGGCAT
83282967 TTTACGAGCT
Statistics
Matches: 98, Mismatches: 22, Indels: 18
0.71 0.16 0.13
Matches are distributed among these distances:
42 26 0.27
43 40 0.41
44 31 0.32
45 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (43 bp):
CGATATTTGATTACATGTAAGACCACGTCTGAGACATTGGCAT
Found at i:83287309 original size:89 final size:88
Alignment explanation
Indices: 83287140--83287500 Score: 316
Period size: 89 Copynumber: 4.0 Consensus size: 88
83287130 TACAAGCTAC
* * * * * * * *
83287140 AAATCTTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAAATAGAAAATCTTATCTCTCTGAAAT
1 AAATCTTATCT-CCTGAAGTTGCAGTGGAGCAGATTGAAGATAG-CAATCTTATTTCCCTGAAGT
* * **
83287205 TGCAATAGAGCAGATTAAAGCTA-T
64 TGCAGTGGAATAGATTAAAGCTAGT
* *
83287229 AAACCTTAGT-TCCTTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATTTTCCTGAAG
1 AAATCTTA-TCTCC-TGAAGTTGCAGTGGAGCAGATTGAAGATAGC-AATCTTATTTCCCTGAAG
* *
83287293 TTGTAGTGGAATAGATTAAAGCTACAAATT
63 TTGCAGTGGAATAGATTAAAGCT----AGT
* * * *
83287323 ACAAATCTTATCTCACTGAAGTTGCAGTAGAGCAAATTGAAGTTA-CAGATCTTATCTCCCTGAA
1 --AAATCTTATCTC-CTGAAGTTGCAGTGGAGCAGATTGAAGATAGCA-ATCTTATTTCCCTGAA
* * * * *
83287387 GTTACAGTGGAGTAGATCAAAGATAGC
62 GTTGCAGTGGAATAGATTAAAGCTAGT
* *
83287414 AAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAAAT-GCTAATCTTATTTCCCTGAAGT
1 AAATCTTATCT-CCTGAAGTTGCAGTGGAGCAGATTGAAGATAGC-AATCTTATTTCCCTGAAGT
83287478 TGCAGTGGAATAGATTAAAGCTA
64 TGCAGTGGAATAGATTAAAGCTA
83287501 CAAGTTGTAA
Statistics
Matches: 218, Mismatches: 38, Indels: 32
0.76 0.13 0.11
Matches are distributed among these distances:
88 2 0.01
89 138 0.63
90 3 0.01
91 1 0.00
93 1 0.00
94 2 0.01
95 35 0.16
96 35 0.16
97 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (88 bp):
AAATCTTATCTCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAATCTTATTTCCCTGAAGTTG
CAGTGGAATAGATTAAAGCTAGT
Found at i:83287315 original size:185 final size:185
Alignment explanation
Indices: 83287084--83287547 Score: 556
Period size: 185 Copynumber: 2.5 Consensus size: 185
83287074 TAAATCTATC
* * * *
83287084 ATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAATAAACTAAAGCTACAAGCTACAAATCTTAT
1 ATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAGCTACAAGTTACAAATCTTAT
* * * *
83287149 CTCCCTGAAGTTGTAGTAGAGCAGATTAAAAATAGAAAATCTTATCTCTCTGAAATTGCAATAGA
66 CTCCCTGAAGTTGCAGTAGAGCAAATTAAAAATA-AAAATCTTATCTCCCTGAAATTACAATAGA
* * * * *
83287214 GCAGATTAAAGCTA-TAAACCTTAGT-TCCTTGAAGTTGCAGTGGAGCAGATTGAAG
130 GCAGATCAAAGATAGCAAACCTTA-TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAA
* * * *
83287269 ATAGCGAATCTTATTTTCCTGAAGTTGTAGTGGAATAGATTAAAGCTACAAATTACAAATCTTAT
1 ATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAGCTACAAGTTACAAATCTTAT
* * ** * * * * *
83287334 CTCACTGAAGTTGCAGTAGAGCAAATTGAAGTTACAGATCTTATCTCCCTGAAGTTACAGTGGAG
66 CTCCCTGAAGTTGCAGTAGAGCAAATTAAAAATAAAAATCTTATCTCCCTGAAATTACAATAGAG
* * *
83287399 TAGATCAAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAA
131 CAGATCAAAGATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAA
* ** *
83287454 AT-GCTAATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAGCTACAAGTTGTAAGTCTTAT
1 ATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAGCTACAAGTTACAAATCTTAT
* * * *
83287518 TTCCCTGAAGTTGAAGTGGAACAAATTAAA
66 CTCCCTGAAGTTGCAGTAGAGCAAATTAAA
83287548 GCTACAAGTT
Statistics
Matches: 235, Mismatches: 42, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
184 114 0.49
185 121 0.51
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (185 bp):
ATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAGCTACAAGTTACAAATCTTAT
CTCCCTGAAGTTGCAGTAGAGCAAATTAAAAATAAAAATCTTATCTCCCTGAAATTACAATAGAG
CAGATCAAAGATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAA
Found at i:83287355 original size:140 final size:140
Alignment explanation
Indices: 83287185--83287449 Score: 343
Period size: 140 Copynumber: 1.9 Consensus size: 140
83287175 TAAAAATAGA
* * * *
83287185 AAATCTTATCTCTCTGAAATTGCAATAGAGCAGATTAAAGCTATAAACCTTAGT-TCCTTGAAGT
1 AAATCTTATCTCACTGAAATTGCAATAGAGCAAATTAAAGCTACAAACCTTA-TCTCCCTGAAGT
* ** * * * *
83287249 TGCAGTGGAGCAGATTGAAGATAGCGAATCTTATTTTCCTGAAGTTGTAGTGGAATAGATTAAAG
65 TACAGTGGAGCAGATCAAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTAAAG
83287314 CTACAAATTAC
130 CTACAAATTAC
* * * * * *
83287325 AAATCTTATCTCACTGAAGTTGCAGTAGAGCAAATTGAAGTTACAGATCTTATCTCCCTGAAGTT
1 AAATCTTATCTCACTGAAATTGCAATAGAGCAAATTAAAGCTACAAACCTTATCTCCCTGAAGTT
* *
83287390 ACAGTGGAGTAGATCAAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATT
66 ACAGTGGAGCAGATCAAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATT
83287450 GAAAATGCTA
Statistics
Matches: 105, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
139 1 0.01
140 104 0.99
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (140 bp):
AAATCTTATCTCACTGAAATTGCAATAGAGCAAATTAAAGCTACAAACCTTATCTCCCTGAAGTT
ACAGTGGAGCAGATCAAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTAAAGC
TACAAATTAC
Found at i:83287386 original size:44 final size:44
Alignment explanation
Indices: 83287321--83287693 Score: 269
Period size: 44 Copynumber: 8.1 Consensus size: 44
83287311 AAGCTACAAA
* * *
83287321 TTACAAATCTTATCTCACTGAAGTTGCAGTAGAGCAAATTGAAG
1 TTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * * **
83287365 TTACAGATCTTATCTCCCTGAAGTTACAGTGGAGTAGATCAAAG
1 TTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * *
83287409 ATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAA
1 TTA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * * * ** *
83287454 ATGCTAATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAG
1 TTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * * * *
83287498 CTACAAGTTGTAAGTCTTATTTCCCTGAAGTTGAAGTGGAACAAATTAAAGCTACAAG
1 TTAC-A-----AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G----AAG
** * *
83287556 TTACAAATCTTATCTCGTTGAAGTTGCAGTGTAGTAGATTGAAG
1 TTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * * * * *
83287600 ATACGAATGTTATTTCCTTGAAGTTGTAGTGGAGCAGATTGAAG
1 TTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * * *
83287644 CTACTAATCTTATCTCCCTGAAGTTGCACTGGAGCAAATTGAAG
1 TTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
*
83287688 TGACAA
1 TTACAA
83287694 TTACTATACC
Statistics
Matches: 259, Mismatches: 55, Indels: 30
0.75 0.16 0.09
Matches are distributed among these distances:
44 154 0.59
45 38 0.15
48 1 0.00
50 2 0.01
51 55 0.21
52 2 0.01
57 1 0.00
58 6 0.02
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (44 bp):
TTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
Found at i:83287422 original size:229 final size:233
Alignment explanation
Indices: 83287137--83287638 Score: 552
Period size: 235 Copynumber: 2.2 Consensus size: 233
83287127 AGCTACAAGC
** * *
83287137 TACAAATCTTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAAATAGAAAATCTTATCTCTCTGA
1 TACAAATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCAAAAATAGAAAATCTTATCTCCCTGA
* *
83287202 AATTGCAATAGAGCAGATT-AAA-GCTATAAACCTTAGTTCCTTGAAGTTGCAGTGGAGCAGATT
66 AATTGCAATAGAGCAGATTAAAATGC--T-AACCTTAGTTCCCTGAAGTTGCAGTGGAACAGATT
* * * * * *
83287265 GAAG-A-TAG-CG-AA-TCTTATTTTCCTGAAGTTGTAGTGGAATAGATTAAAGCTACAAATTAC
128 AAAGCACAAGTCGTAAGTCTTATTTCCCTGAAGTTGAAGTGGAACAAATTAAAGCTACAAATTAC
83287325 AAATCTTATCTCACTGAAGTTGCAGTAGAGCAAATTGAAGT
193 AAATCTTATCTCACTGAAGTTGCAGTAGAGCAAATTGAAGT
* * * * *
83287366 TACAGATCTTATCTCCCTGAAGTTACAGTGGAGTAGATCAAAGATAGCAAATCTTATCTCCCTGA
1 TACAAATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCAAAAATAGAAAATCTTATCTCCCTGA
* * * * * * *
83287431 AGTTGCAGTGGAGTAGATTGAAAATGCTAATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTAA
66 AATTGCAATAGAGCAGATT-AAAATGCTAACCTTAGTTCCCTGAAGTTGCAGTGGAACAGATTAA
* *
83287496 AGCTACAAGTTGTAAGTCTTATTTCCCTGAAGTTGAAGTGGAACAAATTAAAGCTACAAGTTACA
130 AGC-ACAAGTCGTAAGTCTTATTTCCCTGAAGTTGAAGTGGAACAAATTAAAGCTACAAATTACA
** * * *
83287561 AATCTTATCTCGTTGAAGTTGCAGT-GTAGTAGATTGAAGA
194 AATCTTATCTCACTGAAGTTGCAGTAG-AGCAAATTGAAGT
* * * * ** *
83287601 TACGAATGTTATTTCCTTGAAGTTGTAGTGGAGCAGAT
1 TACAAATCTTATCTCCCTGAAGTTACAGTAGAGCAGAT
83287639 TGAAGCTACT
Statistics
Matches: 224, Mismatches: 39, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
229 104 0.46
230 1 0.00
231 4 0.02
232 4 0.02
233 1 0.00
234 3 0.01
235 107 0.48
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.31
Consensus pattern (233 bp):
TACAAATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCAAAAATAGAAAATCTTATCTCCCTGA
AATTGCAATAGAGCAGATTAAAATGCTAACCTTAGTTCCCTGAAGTTGCAGTGGAACAGATTAAA
GCACAAGTCGTAAGTCTTATTTCCCTGAAGTTGAAGTGGAACAAATTAAAGCTACAAATTACAAA
TCTTATCTCACTGAAGTTGCAGTAGAGCAAATTGAAGT
Found at i:83287567 original size:51 final size:51
Alignment explanation
Indices: 83287459--83287586 Score: 175
Period size: 51 Copynumber: 2.5 Consensus size: 51
83287449 TGAAAATGCT
* * **
83287459 AATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAGCTACAAGTTGTA
1 AATCTTATTTCCCTGAAGTTGCAGTGGAACAAATTAAAGCTACAAGTTACA
* *
83287510 AGTCTTATTTCCCTGAAGTTGAAGTGGAACAAATTAAAGCTACAAGTTACA
1 AATCTTATTTCCCTGAAGTTGCAGTGGAACAAATTAAAGCTACAAGTTACA
* **
83287561 AATCTTATCTCGTTGAAGTTGCAGTG
1 AATCTTATTTCCCTGAAGTTGCAGTG
83287587 TAGTAGATTG
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 66 1.00
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.33
Consensus pattern (51 bp):
AATCTTATTTCCCTGAAGTTGCAGTGGAACAAATTAAAGCTACAAGTTACA
Found at i:83289006 original size:22 final size:23
Alignment explanation
Indices: 83288962--83289007 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
83288952 CCATAGCTTG
*
83288962 TATGAGCTTATCGTTTCAGCTCT
1 TATGAGCTTATCGTTTCAACTCT
83288985 TATGAGCTTA-C-TATTCAACTCT
1 TATGAGCTTATCGT-TTCAACTCT
83289007 T
1 T
83289008 CGAAGCTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 1 0.05
22 10 0.48
23 10 0.48
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.43
Consensus pattern (23 bp):
TATGAGCTTATCGTTTCAACTCT
Found at i:83292286 original size:12 final size:11
Alignment explanation
Indices: 83292269--83292307 Score: 51
Period size: 12 Copynumber: 3.3 Consensus size: 11
83292259 AATTTAGATA
83292269 TTATTATTATT
1 TTATTATTATT
83292280 GTTATTATTCATT
1 -TTATTATT-ATT
83292293 TTATTAGTTATT
1 TTATTA-TTATT
83292305 TTA
1 TTA
83292308 ATTTTTTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 20 0.80
13 5 0.20
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.67
Consensus pattern (11 bp):
TTATTATTATT
Found at i:83292311 original size:18 final size:18
Alignment explanation
Indices: 83292275--83292312 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
83292265 GATATTATTA
*
83292275 TTATTGTTATTATTCATT
1 TTATTGTTATTATTAATT
83292293 TTATTAGTTATT-TTAATT
1 TTATT-GTTATTATTAATT
83292311 TT
1 TT
83292313 TTCTTTGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.24, C:0.03, G:0.05, T:0.68
Consensus pattern (18 bp):
TTATTGTTATTATTAATT
Found at i:83293766 original size:25 final size:25
Alignment explanation
Indices: 83293738--83293794 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
83293728 CAATTGGTCA
* *
83293738 AATTTTGTTTTAATTAATA-TTTTTT
1 AATTTTATTTTAACTAA-AGTTTTTT
83293763 AATTTTATTTTAACTAAAGTTTTTT
1 AATTTTATTTTAACTAAAGTTTTTT
*
83293788 ATTTTTA
1 AATTTTA
83293795 AAAAGTATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 1 0.04
25 27 0.96
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.65
Consensus pattern (25 bp):
AATTTTATTTTAACTAAAGTTTTTT
Found at i:83298104 original size:12 final size:12
Alignment explanation
Indices: 83298087--83298113 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
83298077 ATTTATTTAT
83298087 ATACATTTTAAG
1 ATACATTTTAAG
83298099 ATACATTTTAAG
1 ATACATTTTAAG
83298111 ATA
1 ATA
83298114 ATAAAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.41
Consensus pattern (12 bp):
ATACATTTTAAG
Found at i:83298348 original size:9 final size:10
Alignment explanation
Indices: 83298320--83298358 Score: 71
Period size: 10 Copynumber: 4.0 Consensus size: 10
83298310 TAGTTTTTAA
83298320 AATAATTTTT
1 AATAATTTTT
83298330 AATAATTTTT
1 AATAATTTTT
83298340 AATAA-TTTT
1 AATAATTTTT
83298349 AATAATTTTT
1 AATAATTTTT
83298359 TTATATTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 9 0.32
10 19 0.68
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
AATAATTTTT
Found at i:83298350 original size:19 final size:20
Alignment explanation
Indices: 83298320--83298358 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
83298310 TAGTTTTTAA
83298320 AATAATTTTTAATAATTTTT
1 AATAATTTTTAATAATTTTT
83298340 AATAA-TTTTAATAATTTTT
1 AATAATTTTTAATAATTTTT
83298359 TTATATTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
AATAATTTTTAATAATTTTT
Found at i:83322275 original size:17 final size:17
Alignment explanation
Indices: 83322253--83322285 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
83322243 GATATGATAC
83322253 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
83322270 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
83322286 AGGAAACATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:83322286 original size:18 final size:17
Alignment explanation
Indices: 83322253--83322286 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
83322243 GATATGATAC
*
83322253 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
83322270 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
83322287 GGAAACATGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:83322552 original size:22 final size:21
Alignment explanation
Indices: 83322517--83322592 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
83322507 AAAAGGTATC
* *
83322517 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
83322538 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
83322561 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
83322580 TGC-AATCATATCT
1 TACAAATCATATCT
83322593 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:83322577 original size:19 final size:19
Alignment explanation
Indices: 83322553--83322640 Score: 155
Period size: 19 Copynumber: 4.8 Consensus size: 19
83322543 AATCATATCT
83322553 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
83322572 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
83322590 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
83322607 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
83322626 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
83322641 TATTGAAGAT
Statistics
Matches: 66, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 34 0.52
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:83322609 original size:35 final size:37
Alignment explanation
Indices: 83322546--83322640 Score: 144
Period size: 35 Copynumber: 2.6 Consensus size: 37
83322536 ATTACAAAAT
83322546 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
83322582 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
83322617 CATATCATATCTAAGATTGCATAT
1 CATATCATATCTAAGATTG-ATAT
83322641 TATTGAAGAT
Statistics
Matches: 54, Mismatches: 0, Indels: 8
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.41
36 19 0.35
37 10 0.19
38 3 0.06
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:83322640 original size:14 final size:15
Alignment explanation
Indices: 83322567--83322622 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
83322557 AGATTGCATA
83322567 TCATATCTAAGATTG
1 TCATATCTAAGATTG
83322582 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
83322600 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
83322617 -CATATC
1 TCATATC
83322623 ATATCTAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:83322799 original size:21 final size:20
Alignment explanation
Indices: 83322762--83322800 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
83322752 TTGGACTTCA
**
83322762 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGACTTATTAT
83322782 TTTTGTTTTTGGACTTATT
1 TTTT-TTTTTGGACTTATT
83322801 TCTGGGCTCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTGGACTTATTAT
Found at i:83331674 original size:81 final size:81
Alignment explanation
Indices: 83331536--83331704 Score: 209
Period size: 81 Copynumber: 2.1 Consensus size: 81
83331526 AGCTTGGTCT
* * *
83331536 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTTCGAAGGGCTTTAGAGCCAGTG-TC
1 CGAAGGGCCTTTGAGCCAGTGCTAAT-ACCGAACTTAGTCTCGAAGGGCTTTAGAGCCAGTGCTA
*
83331600 ATAATCGGACTT-AGTTC
65 AGAATCGGACTTGA-TTC
* * *
83331617 CGAAGGGCCTTTGAGCCAGTGGTCTAAT-CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCT
1 CGAAGGGCCTTTGAGCCAGT-G-CTAATACCGAACTTAGTCTCGAAGGGCTTTAGAGCCAGTGCT
*
83331681 AAGAATCGGGCTTGATTC
64 AAGAATCGGACTTGATTC
83331699 CGAAGG
1 CGAAGG
83331705 ATGTTTGTGC
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
81 49 0.64
82 21 0.28
83 6 0.08
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.27
Consensus pattern (81 bp):
CGAAGGGCCTTTGAGCCAGTGCTAATACCGAACTTAGTCTCGAAGGGCTTTAGAGCCAGTGCTAA
GAATCGGACTTGATTC
Found at i:83331694 original size:41 final size:41
Alignment explanation
Indices: 83331523--83331694 Score: 181
Period size: 41 Copynumber: 4.2 Consensus size: 41
83331513 GGGTCTAAAT
83331523 TCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
1 TCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* * * * * *
83331564 CCGAACTTAGTTTCGAAGGGCTTTAGAGCCAGTG-TCATAA
1 TCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* * * *
83331604 TCG-GACTTAGT-TCCGAAGGGCCTTTGAGCCAGTGGT-CTAA
1 TCGAG-CTTGGTCT-CGAAGGGCTTTTGAGCCAGTGCTAATAA
*
83331644 TCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAAGAA
1 T-CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
*
83331686 TCGGGCTTG
1 TCGAGCTTG
83331695 ATTCCGAAGG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
39 1 0.01
40 36 0.34
41 65 0.61
42 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (41 bp):
TCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
Found at i:83333500 original size:18 final size:19
Alignment explanation
Indices: 83333463--83333502 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
83333453 ATTGTGTATT
83333463 TGAATAGAAATAAAAGAAA
1 TGAATAGAAATAAAAGAAA
* *
83333482 TGAATAGGAA-AAGAGAAA
1 TGAATAGAAATAAAAGAAA
83333500 TGA
1 TGA
83333503 GAAACATTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.62, C:0.00, G:0.23, T:0.15
Consensus pattern (19 bp):
TGAATAGAAATAAAAGAAA
Found at i:83333593 original size:6 final size:6
Alignment explanation
Indices: 83333582--83333625 Score: 61
Period size: 6 Copynumber: 7.3 Consensus size: 6
83333572 TTTCCAAAAG
* * *
83333582 TGGAAA TGGAAA TGGAAA TGGAAA TGAAAA TGAAAA TAGAAA TG
1 TGGAAA TGGAAA TGGAAA TGGAAA TGGAAA TGGAAA TGGAAA TG
83333626 ATCCAATTGC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.55, C:0.00, G:0.27, T:0.18
Consensus pattern (6 bp):
TGGAAA
Found at i:83333605 original size:18 final size:18
Alignment explanation
Indices: 83333577--83333626 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
83333567 GTGGGTTTCC
*
83333577 AAAAGTGGAAATGGAAATG
1 AAAA-TGGAAATGAAAATG
*
83333596 GAAATGGAAATGAAAATG
1 AAAATGGAAATGAAAATG
*
83333614 AAAATAGAAATGA
1 AAAATGGAAATGA
83333627 TCCAATTGCA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
18 24 0.89
19 3 0.11
ACGTcount: A:0.58, C:0.00, G:0.26, T:0.16
Consensus pattern (18 bp):
AAAATGGAAATGAAAATG
Found at i:83333737 original size:26 final size:26
Alignment explanation
Indices: 83333701--83333762 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 26
83333691 ACATATTTTC
* **
83333701 TCAAATTTTTACCTTGAGAAAAATCA
1 TCAAAATTTTACCAGGAGAAAAATCA
* * *
83333727 TCAAAATTTTACCAGGGGTAAAATCG
1 TCAAAATTTTACCAGGAGAAAAATCA
83333753 TCAAAATTTT
1 TCAAAATTTT
83333763 GTTGTGGATA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.34
Consensus pattern (26 bp):
TCAAAATTTTACCAGGAGAAAAATCA
Found at i:83346306 original size:32 final size:32
Alignment explanation
Indices: 83346270--83346334 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
83346260 TGTATGCATT
83346270 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
83346302 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
83346334 T
1 T
83346335 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:83355707 original size:14 final size:16
Alignment explanation
Indices: 83355678--83355801 Score: 62
Period size: 16 Copynumber: 7.5 Consensus size: 16
83355668 TAACCCTATA
83355678 TATATATTTTTATTAT
1 TATATATTTTTATTAT
83355694 TATATATTTTT-TATAT
1 TATATATTTTTAT-TAT
* * *
83355710 TGTTATTTGTTTTATTTT
1 T-ATATAT-TTTTATTAT
83355728 TA-ACCTTATTTTTA-TAT
1 TATA---TATTTTTATTAT
*
83355745 TATATATTATATAATTAT
1 TATATATT-T-TTATTAT
*
83355763 T-T-TATTATATATTAT
1 TATATATT-TTTATTAT
*
83355778 T-TATATTATTATTTAT
1 TATATATTTTTA-TTAT
83355794 TATATATT
1 TATATATT
83355802 ATTTTCACAA
Statistics
Matches: 83, Mismatches: 11, Indels: 27
0.69 0.09 0.22
Matches are distributed among these distances:
15 14 0.17
16 32 0.39
17 17 0.20
18 17 0.20
19 3 0.04
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (16 bp):
TATATATTTTTATTAT
Found at i:83355778 original size:3 final size:3
Alignment explanation
Indices: 83355733--83355988 Score: 78
Period size: 3 Copynumber: 84.0 Consensus size: 3
83355723 ATTTTTAACC
* *
83355733 TTA TTT TTA -TA TTA TATA TTA -TA TAA TTA TT- TTA TTA TATA TTA
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
**
83355777 TT- TATA TTA TTA TTTA TTA TATA TTA TT- TTCA CAAA TTA TTA TTA
1 TTA T-TA TTA TTA -TTA TTA T-TA TTA TTA TT-A -TTA TTA TTA TTA
* *
83355822 TT- TTA -CA TTA TTA TTTA TATA TTA TTA TTA -TA TT- TTA CTT- GTA
1 TTA TTA TTA TTA TTA -TTA T-TA TTA TTA TTA TTA TTA TTA -TTA TTA
* * * *
83355865 TTA TATA TTA -TA TATA TTT TTT TTA CATA TATA CT- TTA -TA TTA TATA
1 TTA T-TA TTA TTA T-TA TTA TTA TTA -TTA T-TA TTA TTA TTA TTA T-TA
*
83355912 TTA TAA TTA TT- TTA TTA TATA TTA TTA TGTCA TT- TT- TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA T-TA TTA TTA T-T-A TTA TTA TTA TTA TTA
* * *
83355956 TTA TACA TTT TTA TCTA TATA TTA TTA TCA TTA
1 TTA T-TA TTA TTA T-TA T-TA TTA TTA TTA TTA
83355989 AAGGTTTTTA
Statistics
Matches: 190, Mismatches: 27, Indels: 72
0.66 0.09 0.25
Matches are distributed among these distances:
2 30 0.16
3 110 0.58
4 48 0.25
5 2 0.01
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:83355867 original size:49 final size:49
Alignment explanation
Indices: 83355687--83355873 Score: 130
Period size: 46 Copynumber: 3.9 Consensus size: 49
83355677 ATATATATTT
* * * *
83355687 TTATTA-TTATATATT-TT-TTATATTGTTATTTGTTTTATT-TTTAACC
1 TTATTATTTATATATTATTATTATATT-TTACTTGTATTATTATTTTACA
* *
83355733 TTATT-TTTATATTATATATTATATAATTATTTTA-TTATA-TATTA-TTTATA
1 TTATTATTTATA-TAT-TATTAT-T-A-TATTTTACTTGTATTATTATTTTACA
* *
83355783 TTATTATTTAT-TA-TA-TATTAT-TTTCACAAAT-TATTATTATTTTACA
1 TTATTATTTATATATTATTATTATATTTTAC--TTGTATTATTATTTTACA
83355829 TTATTATTTATATATTATTATTATATTTTACTTGTATTATATATT
1 TTATTATTTATATATTATTATTATATTTTACTTGTATTAT-TATT
83355874 ATATATATTT
Statistics
Matches: 110, Mismatches: 10, Indels: 38
0.70 0.06 0.24
Matches are distributed among these distances:
42 4 0.04
43 1 0.01
44 3 0.03
45 7 0.06
46 29 0.26
47 7 0.06
48 4 0.04
49 16 0.15
50 22 0.20
51 9 0.08
52 4 0.04
53 4 0.04
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.64
Consensus pattern (49 bp):
TTATTATTTATATATTATTATTATATTTTACTTGTATTATTATTTTACA
Found at i:83355914 original size:63 final size:63
Alignment explanation
Indices: 83355822--83355980 Score: 157
Period size: 63 Copynumber: 2.5 Consensus size: 63
83355812 ATTATTATTA
* *
83355822 TTTTACAT-TATTATTTATATATTAT-TATTATATTTTACTTGTATTATATATTA-TATAT-ATT
1 TTTTACATATA-TACTT-TATATTATATATTATA-ATTA-TTGTATTATATATTATTATATCATT
83355883 TT
62 TT
* *
83355885 TTTTACATATATACTTTATATTATATATTATAATTATTTTATTATATATTATTATGTCATTTT
1 TTTTACATATATACTTTATATTATATATTATAATTATTGTATTATATATTATTATATCATTTT
* * *
83355948 TTATA-TTATTATACATTTTTATCTATATATTAT
1 TTTTACATA-TATAC-TTTATAT-TATATATTAT
83355981 TATCATTAAA
Statistics
Matches: 82, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
61 14 0.17
62 17 0.21
63 33 0.40
64 8 0.10
65 10 0.12
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (63 bp):
TTTTACATATATACTTTATATTATATATTATAATTATTGTATTATATATTATTATATCATTTT
Found at i:83355948 original size:24 final size:22
Alignment explanation
Indices: 83355903--83355987 Score: 90
Period size: 21 Copynumber: 4.0 Consensus size: 22
83355893 ATATACTTTA
*
83355903 TATTATATATTATAATT-ATTT
1 TATTATATATTATTATTCATTT
83355924 TATTATATATTATTATGTCA-TT
1 TATTATATATTATTAT-TCATTT
*
83355946 T-TT-TATATTATTATACATTTT
1 TATTATATATTATTATTCA-TTT
83355967 TATCTATATATTATTA-TCATT
1 TAT-TATATATTATTATTCATT
83355988 AAAGGTTTTT
Statistics
Matches: 54, Mismatches: 3, Indels: 13
0.77 0.04 0.19
Matches are distributed among these distances:
19 2 0.04
20 11 0.20
21 20 0.37
22 7 0.13
23 4 0.07
24 10 0.19
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.61
Consensus pattern (22 bp):
TATTATATATTATTATTCATTT
Found at i:83355967 original size:20 final size:22
Alignment explanation
Indices: 83355920--83355980 Score: 58
Period size: 20 Copynumber: 2.9 Consensus size: 22
83355910 TATTATAATT
* *
83355920 ATTTTATTATATATTATTATGTC
1 ATTTTA-TCTATATTATTATGAC
83355943 ATTTT-T-TATATTATTAT-AC
1 ATTTTATCTATATTATTATGAC
83355962 ATTTTTATCTATA-TATTAT
1 A-TTTTATCTATATTATTAT
83355981 TATCATTAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
19 2 0.06
20 15 0.44
21 8 0.24
22 4 0.12
23 5 0.15
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (22 bp):
ATTTTATCTATATTATTATGAC
Found at i:83356172 original size:23 final size:21
Alignment explanation
Indices: 83356123--83356174 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 21
83356113 ATCATTAATT
*
83356123 ACTTATTTTATATTATTCTAA
1 ACTTATTTTATATTATTATAA
83356144 ACTTATATTTATATATATTATATA
1 ACTTAT-TTTATAT-TATTATA-A
83356168 A-TTATTT
1 ACTTATTT
83356175 CATTATAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 6 0.22
22 9 0.33
23 10 0.37
24 2 0.07
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.58
Consensus pattern (21 bp):
ACTTATTTTATATTATTATAA
Found at i:83356255 original size:17 final size:16
Alignment explanation
Indices: 83356242--83356299 Score: 66
Period size: 17 Copynumber: 3.6 Consensus size: 16
83356232 CCAATATATT
83356242 TTATATTTTTATATAA
1 TTATATTTTTATATAA
*
83356258 TTATTATTCTTATA-AA
1 TTA-TATTTTTATATAA
83356274 -TATATTTTTATTATATA
1 TTATATTTTTA-TATA-A
83356291 TTATATTTT
1 TTATATTTT
83356300 AAATTTATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
14 7 0.20
15 4 0.11
16 6 0.17
17 10 0.29
18 8 0.23
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (16 bp):
TTATATTTTTATATAA
Found at i:83356300 original size:17 final size:17
Alignment explanation
Indices: 83356235--83356300 Score: 50
Period size: 17 Copynumber: 3.9 Consensus size: 17
83356225 TTCTAAACCA
*
83356235 ATATATTTTATATTT-TT
1 ATATATTATAT-TTTATT
83356252 ATATAATTATTATTCTTA-T
1 ATAT-ATTA-TATT-TTATT
*
83356271 AAATA-TAT-TTTTATT
1 ATATATTATATTTTATT
83356286 ATATATTATATTTTA
1 ATATATTATATTTTA
83356301 AATTTATTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 14
0.70 0.05 0.25
Matches are distributed among these distances:
14 3 0.08
15 7 0.18
16 4 0.10
17 11 0.28
18 5 0.13
19 9 0.23
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (17 bp):
ATATATTATATTTTATT
Found at i:83363042 original size:35 final size:35
Alignment explanation
Indices: 83362968--83363043 Score: 89
Period size: 35 Copynumber: 2.2 Consensus size: 35
83362958 CTGTAACTGT
* *
83362968 ATCTGTATTTGGAATAGGCTCAAGCCCGAATCTGT
1 ATCTGTATTTGGAATAAGCTCAAGCCCGAATCTGA
* * * * *
83363003 ATCTGTATTTGGCATAAGCTCAGGCTCGATTGTGA
1 ATCTGTATTTGGAATAAGCTCAAGCCCGAATCTGA
83363038 ATCTGT
1 ATCTGT
83363044 CTAATTTGTG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (35 bp):
ATCTGTATTTGGAATAAGCTCAAGCCCGAATCTGA
Found at i:83372919 original size:22 final size:22
Alignment explanation
Indices: 83372894--83372945 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
83372884 CACTAGGAAC
* *
83372894 TATGTGATCTGAGGTCATGAGA
1 TATGTGATCTAAGCTCATGAGA
*
83372916 TATGTGGTCTAAGCTCATGAGA
1 TATGTGATCTAAGCTCATGAGA
83372938 TATGTGAT
1 TATGTGAT
83372946 ATATGTTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.27, C:0.10, G:0.29, T:0.35
Consensus pattern (22 bp):
TATGTGATCTAAGCTCATGAGA
Found at i:83376113 original size:93 final size:93
Alignment explanation
Indices: 83375984--83376154 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
83375974 GCCCATAAGT
* * ** *
83375984 GAACTTGGACTCAACTCAATGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83376049 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
83376077 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
83376142 CGAGTTCGGATGC
66 CGAGCTCGGATGC
83376155 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:83376170 original size:46 final size:46
Alignment explanation
Indices: 83375976--83376156 Score: 220
Period size: 46 Copynumber: 3.9 Consensus size: 46
83375966 TGTAACCCGC
* * * *
83375976 CCATAAGTGAACTTGGACTCAACTCAATGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCAT
* *
83376022 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-CTCGCAT
* *** * *
83376068 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCAT
*
83376115 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTC
83376157 AACCATCCTA
Statistics
Matches: 113, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
46 77 0.68
47 36 0.32
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCAT
Found at i:83385573 original size:41 final size:40
Alignment explanation
Indices: 83385526--83385652 Score: 119
Period size: 41 Copynumber: 3.1 Consensus size: 40
83385516 AGTCCTACAG
* * *
83385526 GCTTCATGCCGGTGTATATTATCAGGCTTTGTGCCTAGTAG
1 GCTTCATGTCGGTGTATATTATCAGG-TTTGTGCCTAGCAA
* * * * *
83385567 GTTTCATGTTGGTTTATATTATTAAGGTTTATGCCTAGCAA
1 GCTTCATGTCGGTGTATATTA-TCAGGTTTGTGCCTAGCAA
* * * *
83385608 GCTTCGTTTCAGTGTATATTATCAGGTTTTGTGCCTAGCAG
1 GCTTCATGTCGGTGTATATTATCAGG-TTTGTGCCTAGCAA
83385649 GCTT
1 GCTT
83385653 TAAGTCAATG
Statistics
Matches: 67, Mismatches: 17, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
40 4 0.06
41 59 0.88
42 4 0.06
ACGTcount: A:0.19, C:0.16, G:0.24, T:0.42
Consensus pattern (40 bp):
GCTTCATGTCGGTGTATATTATCAGGTTTGTGCCTAGCAA
Found at i:83390882 original size:31 final size:31
Alignment explanation
Indices: 83390847--83390908 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
83390837 CTGGCACTCC
83390847 AATCCAACTCGGACTAAATTGAGCTTGTGAA
1 AATCCAACTCGGACTAAATTGAGCTTGTGAA
83390878 AATCCAACTCGGACTAAATTGAGCTTGTGAA
1 AATCCAACTCGGACTAAATTGAGCTTGTGAA
83390909 TCTTTCTCCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.26
Consensus pattern (31 bp):
AATCCAACTCGGACTAAATTGAGCTTGTGAA
Found at i:83399047 original size:16 final size:16
Alignment explanation
Indices: 83398995--83399047 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 16
83398985 TATTTACTTT
** *
83398995 TTTTATTTTACCTTAC
1 TTTTATTTTAGGTTAA
* *
83399011 TTTTACTTTAGGTTTA
1 TTTTATTTTAGGTTAA
*
83399027 GTTTATTTTAGGTTAA
1 TTTTATTTTAGGTTAA
83399043 TTTTA
1 TTTTA
83399048 ATTACGTTAA
Statistics
Matches: 28, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.21, C:0.08, G:0.09, T:0.62
Consensus pattern (16 bp):
TTTTATTTTAGGTTAA
Found at i:83410641 original size:19 final size:19
Alignment explanation
Indices: 83410607--83410644 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
83410597 GTACTTTTTA
*
83410607 TTTATTAGTATATAAAAAT
1 TTTATTAGTAGATAAAAAT
*
83410626 TTTATTAGTAGGTAAAAAT
1 TTTATTAGTAGATAAAAAT
83410645 GATATTTTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.11, T:0.45
Consensus pattern (19 bp):
TTTATTAGTAGATAAAAAT
Found at i:83411533 original size:21 final size:21
Alignment explanation
Indices: 83411476--83411535 Score: 59
Period size: 25 Copynumber: 2.7 Consensus size: 21
83411466 GATAAAGAGA
83411476 ATTATTTATGTTATTATATAAT
1 ATTATTTAT-TTATTATATAAT
*
83411498 GATTACATTAGTTTATATATATAAT
1 -ATTA-TTTA-TTTAT-TATATAAT
83411523 -TTATTTATTTATT
1 ATTATTTATTTATT
83411536 TATTCAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
20 1 0.03
21 5 0.16
22 3 0.09
23 7 0.22
24 7 0.22
25 9 0.28
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (21 bp):
ATTATTTATTTATTATATAAT
Found at i:83411598 original size:21 final size:21
Alignment explanation
Indices: 83411569--83411638 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
83411559 TATATAATTT
*
83411569 TTTTTATTATGATTAATATAA
1 TTTTAATTATGATTAATATAA
*
83411590 TTTTAATTATGATTTAATATCA
1 TTTTAATTATGA-TTAATATAA
* * * *
83411612 -TATAATTTTAAATAATATAA
1 TTTTAATTATGATTAATATAA
83411632 TTTTAAT
1 TTTTAAT
83411639 CATTTTATTC
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
20 7 0.18
21 24 0.62
22 8 0.21
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.54
Consensus pattern (21 bp):
TTTTAATTATGATTAATATAA
Found at i:83411629 original size:15 final size:15
Alignment explanation
Indices: 83411582--83411637 Score: 57
Period size: 15 Copynumber: 3.9 Consensus size: 15
83411572 TTATTATGAT
83411582 TAATATAATTTT-AA
1 TAATATAATTTTAAA
*
83411596 T--TATGA-TTTAATA
1 TAATATAATTTTAA-A
*
83411609 TCATATAATTTTAAA
1 TAATATAATTTTAAA
83411624 TAATATAATTTTAA
1 TAATATAATTTTAA
83411638 TCATTTTATT
Statistics
Matches: 34, Mismatches: 3, Indels: 9
0.74 0.07 0.20
Matches are distributed among these distances:
11 3 0.09
12 5 0.15
13 2 0.06
14 1 0.03
15 18 0.53
16 5 0.15
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (15 bp):
TAATATAATTTTAAA
Found at i:83415466 original size:16 final size:17
Alignment explanation
Indices: 83415426--83415476 Score: 61
Period size: 16 Copynumber: 3.0 Consensus size: 17
83415416 GGATATTAAT
83415426 ATTAAT-ATATATTATA
1 ATTAATAATATATTATA
83415442 ATTTAAATAATATA-TATA
1 A-TT-AATAATATATTATA
*
83415460 ATTAATAATTTATTATA
1 ATTAATAATATATTATA
83415477 GGTTATTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
16 9 0.30
17 8 0.27
18 8 0.27
19 5 0.17
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTAATAATATATTATA
Found at i:83417455 original size:60 final size:60
Alignment explanation
Indices: 83417362--83417481 Score: 231
Period size: 60 Copynumber: 2.0 Consensus size: 60
83417352 CCTACTACAT
*
83417362 CAATTATGTATTTAACCAAATACATAATGACAACTAAGAATGTATTTACATGTCATTAAA
1 CAATTATGTATTTAACCAAAGACATAATGACAACTAAGAATGTATTTACATGTCATTAAA
83417422 CAATTATGTATTTAACCAAAGACATAATGACAACTAAGAATGTATTTACATGTCATTAAA
1 CAATTATGTATTTAACCAAAGACATAATGACAACTAAGAATGTATTTACATGTCATTAAA
83417482 TTTTTTTCCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.45, C:0.13, G:0.09, T:0.33
Consensus pattern (60 bp):
CAATTATGTATTTAACCAAAGACATAATGACAACTAAGAATGTATTTACATGTCATTAAA
Found at i:83417979 original size:24 final size:24
Alignment explanation
Indices: 83417952--83418003 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
83417942 TTAGTAAGTC
*
83417952 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
83417976 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
83418000 AAAT
1 AAAT
83418004 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:83419948 original size:24 final size:24
Alignment explanation
Indices: 83419921--83419972 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
83419911 TTAGTAAGTC
*
83419921 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
83419945 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
83419969 AAAT
1 AAAT
83419973 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:83427045 original size:6 final size:6
Alignment explanation
Indices: 83427034--83427157 Score: 101
Period size: 6 Copynumber: 20.0 Consensus size: 6
83427024 CCCATTATAA
* * *
83427034 CAGAAT CAGAAT CAGAAT CGGAAT CAGAAT TAG-GT GACAGAAT CAGAAT
1 CAGAAT CAGAAT CAGAAT CAGAAT CAGAAT CAGAAT --CAGAAT CAGAAT
* * *
83427083 CAGAAT CAGAAT CAGTAT CAGGTAA- CAGAAT CAAAAT CAGAAT CAGTAT
1 CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT CAGAAT
*
83427132 CAAGTAA- CAGAAT CTAAAAT CAGAAT
1 C-AG-AAT CAGAAT C-AGAAT CAGAAT
83427158 GTGCATGCAA
Statistics
Matches: 94, Mismatches: 14, Indels: 20
0.73 0.11 0.16
Matches are distributed among these distances:
5 5 0.05
6 73 0.78
7 13 0.14
8 3 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
CAGAAT
Found at i:83427083 original size:37 final size:37
Alignment explanation
Indices: 83427031--83427133 Score: 152
Period size: 37 Copynumber: 2.8 Consensus size: 37
83427021 TAGCCCATTA
* *
83427031 TAACAGAATCAGAATCAGAATCGGAATCAGAATTAGG
1 TAACAGAATCAGAATCAGAATCAGAATCAGAATCAGG
* *
83427068 TGACAGAATCAGAATCAGAATCAGAATCAGTATCAGG
1 TAACAGAATCAGAATCAGAATCAGAATCAGAATCAGG
* *
83427105 TAACAGAATCAAAATCAGAATCAGTATCA
1 TAACAGAATCAGAATCAGAATCAGAATCA
83427134 AGTAACAGAA
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.47, C:0.16, G:0.18, T:0.19
Consensus pattern (37 bp):
TAACAGAATCAGAATCAGAATCAGAATCAGAATCAGG
Found at i:83427112 original size:31 final size:31
Alignment explanation
Indices: 83427077--83427157 Score: 135
Period size: 31 Copynumber: 2.6 Consensus size: 31
83427067 GTGACAGAAT
* *
83427077 CAGAATCAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAAGTAA
83427108 CAGAATCAAAATCAGAATCAGTATCAAGTAA
1 CAGAATCAAAATCAGAATCAGTATCAAGTAA
83427139 CAGAATCTAAAATCAGAAT
1 CAGAATC-AAAATCAGAAT
83427158 GTGCATGCAA
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
31 36 0.77
32 11 0.23
ACGTcount: A:0.49, C:0.16, G:0.15, T:0.20
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGTATCAAGTAA
Found at i:83427393 original size:27 final size:27
Alignment explanation
Indices: 83427294--83427395 Score: 98
Period size: 27 Copynumber: 3.8 Consensus size: 27
83427284 GCTCAGTTAT
** * * *
83427294 CAGATATTGTGATAGAGTCACCAGATA
1 CAGATATTGTGGCAAAGCCACCAGAAA
* *
83427321 TAGATATTGTGGCAGAGCCACCAG-AA
1 CAGATATTGTGGCAAAGCCACCAGAAA
*
83427347 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAAAGCCACCAGAAA
* *
83427375 CAGATAATGTAGCAAAGCCAC
1 CAGATATTGTGGCAAAGCCAC
83427396 TTAACAGAAT
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 6 0.10
27 49 0.78
28 8 0.13
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGGCAAAGCCACCAGAAA
Found at i:83427590 original size:22 final size:22
Alignment explanation
Indices: 83427554--83427618 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
83427544 GCAAATACGT
* *
83427554 TTGGCACACAACCATAATCAGG
1 TTGGCACAGAGCCATAATCAGG
*
83427576 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAGAGCCATAAT-CAGG
*
83427598 TTGACAC-GAAGCCATAATCAG
1 TTGGCACAG-AGCCATAATCAG
83427619 AAGGCTTTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
21 3 0.09
22 30 0.86
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAGAGCCATAATCAGG
Found at i:83428102 original size:27 final size:27
Alignment explanation
Indices: 83428046--83428320 Score: 320
Period size: 27 Copynumber: 10.2 Consensus size: 27
83428036 GGGCAAAATA
* *
83428046 GTAATTTTACCCTACA-AGGTATCTTT-
1 GTAATTCTACCCTACAGGGGTAT-TTTG
* * *
83428072 GTAATTCCACCTTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTG
*
83428099 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTTG
**
83428126 GTAATTCTACCCTACAGGGGTATTGCG
1 GTAATTCTACCCTACAGGGGTATTTTG
* * *
83428153 ATAATTCTACCCTACAGAGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTTG
**
83428180 GTAATTCTACCCTACAGGGGTATTGCG
1 GTAATTCTACCCTACAGGGGTATTTTG
* **
83428207 ATAATTCTACCCTACAGGGGTATTGCG
1 GTAATTCTACCCTACAGGGGTATTTTG
* **
83428234 ATAATTCTACCCTACAGGGGTATTGCG
1 GTAATTCTACCCTACAGGGGTATTTTG
*
83428261 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTG
* * *
83428288 ATATTTCTACCCTACAAGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTTG
83428315 GTAATT
1 GTAATT
83428321 TTTAAATCGA
Statistics
Matches: 221, Mismatches: 26, Indels: 3
0.88 0.10 0.01
Matches are distributed among these distances:
26 16 0.07
27 205 0.93
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTTG
Found at i:83428184 original size:81 final size:81
Alignment explanation
Indices: 83428073--83428311 Score: 370
Period size: 81 Copynumber: 3.0 Consensus size: 81
83428063 GGTATCTTTG
* * ** *
83428073 TAATTCCACCTTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCC
83428138 TACAGGGGTATTGCGA
66 TACAGGGGTATTGCGA
* *
83428154 TAATTCTACCCTACAGAGGTATTTCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCC
83428219 TACAGGGGTATTGCGA
66 TACAGGGGTATTGCGA
* ** *
83428235 TAATTCTACCCTACAGGGGTATTGCGGTAATTCTACCCTACAGGGGTATTTTAATATTTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCC
*
83428300 TACAAGGGTATT
66 TACAGGGGTATT
83428312 TTGGTAATTT
Statistics
Matches: 144, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 144 1.00
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCC
TACAGGGGTATTGCGA
Found at i:83428371 original size:27 final size:26
Alignment explanation
Indices: 83428302--83428374 Score: 67
Period size: 27 Copynumber: 2.8 Consensus size: 26
83428292 TTCTACCCTA
* *
83428302 CAAGGGTATTTTGGTAATTTTTAAAT
1 CAAGGGTAATTTGGTAATTTGTAAAT
* **
83428328 CGAGGGTAAAACT-GTAATTCTGTAAAT
1 CAAGGGT-AATTTGGTAATT-TGTAAAT
*
83428355 CAAGGGTACTTTGGTAATTT
1 CAAGGGTAATTTGGTAATTT
83428375 TACAAGTCGA
Statistics
Matches: 35, Mismatches: 9, Indels: 6
0.70 0.18 0.12
Matches are distributed among these distances:
26 15 0.43
27 20 0.57
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (26 bp):
CAAGGGTAATTTGGTAATTTGTAAAT
Found at i:83428387 original size:27 final size:26
Alignment explanation
Indices: 83428355--83428752 Score: 341
Period size: 27 Copynumber: 14.8 Consensus size: 26
83428345 TTCTGTAAAT
* *
83428355 CAAGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAA-A
* *** **
83428382 CGAGGGTATTTCAATAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACA-AA
*** *
83428409 CGAA-GGTATTTCAATAATTTCACAAA
1 C-AAGGGTATTTTGGTAATTTTACAAA
83428435 TC-AGGGATATTTTGGTAATTTTACAAA
1 -CAAGGG-TATTTTGGTAATTTTACAAA
* *
83428462 CTAGGGGTATTTTGATAATTTTACAAA
1 C-AAGGGTATTTTGGTAATTTTACAAA
*
83428489 CCAGGGGTATTTTGGTAATTTTACAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
* * *
83428516 CTAGGGGTATTTTGGTGATTTTATAAA
1 C-AAGGGTATTTTGGTAATTTTACAAA
*
83428543 CAAAGGGTATTTTAGTAATTTTACAAA
1 C-AAGGGTATTTTGGTAATTTTACAAA
* *
83428570 CAAGGGGTATTTTGGTGATTTTATAAA
1 CAA-GGGTATTTTGGTAATTTTACAAA
*
83428597 CAAAGGGTATTTTAGTAATTTTACAAA
1 C-AAGGGTATTTTGGTAATTTTACAAA
* **
83428624 CCAGGGGTATTTTGGTAATTTTGTAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
83428651 CCAAGGGTATTTTGGTAATTTTACAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
* * *
83428678 CTAGGGGTATTTTGGTGATTTTATAAA
1 C-AAGGGTATTTTGGTAATTTTACAAA
* * *
83428705 CCAAGGATATTCTAGTAATTTTACAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
* *
83428732 CCAGGAGTATTTTGTTAATTT
1 CAAGG-GTATTTTGGTAATTT
83428753 GGTAAACTAA
Statistics
Matches: 305, Mismatches: 51, Indels: 30
0.79 0.13 0.08
Matches are distributed among these distances:
25 1 0.00
26 11 0.04
27 284 0.93
28 9 0.03
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (26 bp):
CAAGGGTATTTTGGTAATTTTACAAA
Done.