Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 259 of 290
Found at i:83719818 original size:12 final size:13
Alignment explanation
Indices: 83719801--83719830 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
83719791 TAGCCCAAAT
83719801 AATTT-GTACCTC
1 AATTTGGTACCTC
83719813 AATTTGGTACCTC
1 AATTTGGTACCTC
83719826 AATTT
1 AATTT
83719831 TTTTTACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.43
Consensus pattern (13 bp):
AATTTGGTACCTC
Found at i:83721192 original size:12 final size:12
Alignment explanation
Indices: 83721175--83721200 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
83721165 TGTTTCTCGA
83721175 ATTAGATAATTG
1 ATTAGATAATTG
83721187 ATTAGATAATTG
1 ATTAGATAATTG
83721199 AT
1 AT
83721201 CAAACAGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.42
Consensus pattern (12 bp):
ATTAGATAATTG
Found at i:83721753 original size:16 final size:17
Alignment explanation
Indices: 83721727--83721759 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
83721717 ATGATCTAAA
83721727 GGCAGTTTTAACCAGTT
1 GGCAGTTTTAACCAGTT
*
83721744 GGCA-TTTTAATCAGTT
1 GGCAGTTTTAACCAGTT
83721760 TTTTTTAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.24, C:0.15, G:0.21, T:0.39
Consensus pattern (17 bp):
GGCAGTTTTAACCAGTT
Found at i:83723373 original size:13 final size:13
Alignment explanation
Indices: 83723355--83723382 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
83723345 CACCTACAAC
83723355 AACAATAACCATA
1 AACAATAACCATA
83723368 AACAATAACCATA
1 AACAATAACCATA
83723381 AA
1 AA
83723383 GTAAGAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.64, C:0.21, G:0.00, T:0.14
Consensus pattern (13 bp):
AACAATAACCATA
Found at i:83724030 original size:19 final size:19
Alignment explanation
Indices: 83724006--83724103 Score: 146
Period size: 19 Copynumber: 5.2 Consensus size: 19
83723996 AATCTTTAAG
83724006 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
83724025 GATATGCAATCTTAGACAT
1 GATATGCAATCTTAGATAT
*
83724044 GATA--CAAGCTTAGATAT
1 GATATGCAATCTTAGATAT
83724061 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
83724080 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
83724101 GAT
1 GAT
83724104 CTTATAATCT
Statistics
Matches: 71, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
17 15 0.21
19 47 0.66
21 9 0.13
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:83724037 original size:36 final size:36
Alignment explanation
Indices: 83723996--83724103 Score: 103
Period size: 36 Copynumber: 2.9 Consensus size: 36
83723986 ATGAAAATAT
83723996 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
1 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
* * *
83724032 AATC-TT-AGACATGATACAAGCTTAGATATGATATGC
1 AATCTTTAAG-GAT-ATGCAATCTTAGATATGATATGC
* *
83724068 AATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTT-TA-AGGATATGCAATCTT--AGATATGAT
83724104 CTTATAATCT
Statistics
Matches: 56, Mismatches: 8, Indels: 12
0.74 0.11 0.16
Matches are distributed among these distances:
34 2 0.04
35 4 0.07
36 29 0.52
37 1 0.02
38 8 0.14
39 2 0.04
40 10 0.18
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (36 bp):
AATCTTTAAGGATATGCAATCTTAGATATGATATGC
Found at i:83729280 original size:1 final size:1
Alignment explanation
Indices: 83729274--83729345 Score: 54
Period size: 1 Copynumber: 72.0 Consensus size: 1
83729264 CTTTTATTTC
* * * * * * * * *
83729274 AAAAAAAAGAAAAAAATAAAAAAAGAAAAGAAAAAGAAAAAAATAAAAAGAAAAAAGAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
83729339 GAAAAAA
1 AAAAAAA
83729346 TAGAGAGGCC
Statistics
Matches: 51, Mismatches: 20, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
1 51 1.00
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03
Consensus pattern (1 bp):
A
Found at i:83729288 original size:7 final size:7
Alignment explanation
Indices: 83729276--83729345 Score: 67
Period size: 7 Copynumber: 9.9 Consensus size: 7
83729266 TTTATTTCAA
83729276 AAAAAAG
1 AAAAAAG
83729283 AAAAAA-
1 AAAAAAG
83729289 ATAAAAA-
1 A-AAAAAG
83729296 AAGAAAAG
1 AA-AAAAG
83729304 -AAAAAG
1 AAAAAAG
83729310 AAAAAA-
1 AAAAAAG
83729316 ATAAAAAG
1 A-AAAAAG
83729324 AAAAAAGAG
1 -AAAAA-AG
83729333 AAAAAAG
1 AAAAAAG
83729340 AAAAAA
1 AAAAAA
83729346 TAGAGAGGCC
Statistics
Matches: 55, Mismatches: 0, Indels: 16
0.77 0.00 0.23
Matches are distributed among these distances:
6 8 0.15
7 35 0.64
8 9 0.16
9 3 0.05
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03
Consensus pattern (7 bp):
AAAAAAG
Found at i:83729310 original size:27 final size:30
Alignment explanation
Indices: 83729276--83729345 Score: 110
Period size: 27 Copynumber: 2.4 Consensus size: 30
83729266 TTTATTTCAA
*
83729276 AAAAAAGAAAAAAATAAAAA-AAGAAA-AG
1 AAAAAAGAAAAAAATAAAAAGAAAAAAGAG
83729304 -AAAAAGAAAAAAATAAAAAGAAAAAAGAG
1 AAAAAAGAAAAAAATAAAAAGAAAAAAGAG
83729333 AAAAAAGAAAAAA
1 AAAAAAGAAAAAA
83729346 TAGAGAGGCC
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
27 19 0.50
28 5 0.13
29 2 0.05
30 12 0.32
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03
Consensus pattern (30 bp):
AAAAAAGAAAAAAATAAAAAGAAAAAAGAG
Found at i:83730395 original size:44 final size:44
Alignment explanation
Indices: 83730347--83731089 Score: 460
Period size: 44 Copynumber: 16.9 Consensus size: 44
83730337 GATCCAAGAT
* * *
83730347 GATTTAGCATCTTTGTATTGGCAGAGAGAAGATCGAAGACAACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGAAGATCGAAGATAACA
* * * *
83730391 GATTTGGCGTCTCTGTATTGGTAGAGAGCAGATCGAAGATGACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGAAGATCGAAGATAACA
* *
83730435 GATTTGGCATCTCTGTATTTGGCGGAGAGCAA-ATCGAAGACATAGCTA
1 GATTTGGCATCTCTGTA-TTGGCAGAGAG-AAGATCGAAG--ATAAC-A
* * * * *
83730483 -ATTCGGCTTCCACGTGT-TT-ACATTGA-AGCAAG-TCTAAGAT----
1 GATTTGGCAT-CTC-TGTATTGGCA--GAGAG-AAGATCGAAGATAACA
* *
83730523 GATTTGGCATCTCTGTATTGGCAAAGAGCAA-ATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGGCAGAGAG-AAGATCGAAGATAACA
* * *
83730567 GATTTGACATCTCTGTATTGGTAGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGAAGATCGAAGATAACA
* * * *
83730611 AATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGAAGATCGAAGATAACA
* * * *
83730655 GATTTGGCATCTCTGTATTTGGCGGAGAGCAGATCGAAGACATAGCT
1 GATTTGGCATCTCTGTA-TTGGCAGAGAGAAGATCGAAG--ATAACA
* * * ** *
83730702 GATTTGGCTTTCACGTGT-TTACGTTGA-AGCAAG-TCTAAGAT----
1 GATTTGGC-ATCTC-TGTATT-GGCAGAGAG-AAGATCGAAGATAACA
* *
83730743 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGGCAGAGAGAAGATCGAAGATAACA
* * * * * *
83730787 GATTTGGCATCTCTATATTGGCAGAGAGCAGATCAAATATGATA
1 GATTTGGCATCTCTGTATTGGCAGAGAGAAGATCGAAGATAACA
* * * * ***
83730831 GATTTGGCATATCTATATTCGGCGGAGAGCAGATCGAAGACATAGTT
1 GATTTGGCATCTCTGTATT-GGCAGAGAGAAGATCGAAG--ATAACA
* * * ** * *
83730878 GATTTGGCTTCCACGTGT-TT-AC-G-TTGAAG--C-AAGTTTAAGA
1 GATTTGGCAT-CTC-TGTATTGGCAGAGAGAAGATCGAAG-ATAACA
*
83730918 TGATTTGGCATCTCTGTATTGGTAGAGAGCAA-ATCGAAGATAACA
1 -GATTTGGCATCTCTGTATTGGCAGAGAG-AAGATCGAAGATAACA
* * *
83730963 GATTTGACATCTCTGTATTGGCAGAGAGCAGATCGAAGATAATA
1 GATTTGGCATCTCTGTATTGGCAGAGAGAAGATCGAAGATAACA
* *
83731007 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGA-A
1 GATTTGGCATCTCTGTATTGGCAGAGAGAAGATCGAAGATA-ACA
* * * * *
83731051 GATTTGGCGTCTCTGTTTTGTCAGAGAGCATATCGAAGA
1 GATTTGGCATCTCTGTATTGGCAGAGAGAAGATCGAAGA
83731090 GAAGAATAAC
Statistics
Matches: 551, Mismatches: 98, Indels: 100
0.74 0.13 0.13
Matches are distributed among these distances:
39 15 0.03
40 36 0.07
41 29 0.05
42 2 0.00
43 3 0.01
44 320 0.58
45 62 0.11
46 6 0.01
47 54 0.10
48 16 0.03
49 8 0.01
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.28
Consensus pattern (44 bp):
GATTTGGCATCTCTGTATTGGCAGAGAGAAGATCGAAGATAACA
Found at i:83730742 original size:220 final size:220
Alignment explanation
Indices: 83730354--83730870 Score: 809
Period size: 220 Copynumber: 2.3 Consensus size: 220
83730344 GATGATTTAG
* * * * *
83730354 CATCTTTGTATTGGCAGAGAGAAGATCGAAGACAACAGATTTGGCGTCTCTGTATTGGTAGAGAG
1 CATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTGGCAGAGAG
83730419 CAGATCGAAGATGACAGATTTGGCATCTCTGTATTTGGCGGAGAGCAAATCGAAGACATAGCTAA
66 CAGATCGAAGATGACAGATTTGGCATCTCTGTATTTGGCGGAGAGCAAATCGAAGACATAGCTAA
83730484 TTCGGCTTCCACGTGTTTACATTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGGCAAAG
131 TTCGGCTTCCACGTGTTTACATTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGGCAAAG
83730549 AGCAAATCGAAGATAGCAGATTTGA
196 AGCAAATCGAAGATAGCAGATTTGA
* *
83730574 CATCTCTGTATTGGTAGAGAGCAGATCGAAGATAACAAATTTGGCATCTCTGTATTGGCAGAGAG
1 CATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTGGCAGAGAG
* * *
83730639 CAGATCAAAGATGACAGATTTGGCATCTCTGTATTTGGCGGAGAGCAGATCGAAGACATAGCTGA
66 CAGATCGAAGATGACAGATTTGGCATCTCTGTATTTGGCGGAGAGCAAATCGAAGACATAGCTAA
* * * *
83730704 TTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGGCAGAG
131 TTCGGCTTCCACGTGTTTACATTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGGCAAAG
* *
83730769 AGCAGATCGAAGATAGCAGATTTGG
196 AGCAAATCGAAGATAGCAGATTTGA
* * * * * * * *
83730794 CATCTCTATATTGGCAGAGAGCAGATCAAATATGATAGATTTGGCATATCTATATTCGGCGGAGA
1 CATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATT-GGCAGAGA
83730859 GCAGATCGAAGA
65 GCAGATCGAAGA
83730871 CATAGTTGAT
Statistics
Matches: 269, Mismatches: 27, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
220 251 0.93
221 18 0.07
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (220 bp):
CATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTGGCAGAGAG
CAGATCGAAGATGACAGATTTGGCATCTCTGTATTTGGCGGAGAGCAAATCGAAGACATAGCTAA
TTCGGCTTCCACGTGTTTACATTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGGCAAAG
AGCAAATCGAAGATAGCAGATTTGA
Found at i:83730756 original size:176 final size:176
Alignment explanation
Indices: 83730567--83731045 Score: 780
Period size: 176 Copynumber: 2.7 Consensus size: 176
83730557 GAAGATAGCA
* *
83730567 GATTTGACATCTCTGTATTGGTAGAGAGCAGATCGAAGATAACAAATTTGGCATCTCTGTATTGG
1 GATTTGGCATCTCTGTATTGGTAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTGG
*
83730632 CAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTTGGCGGAGAGCAGATCGAAGACA
66 CAGAGAGCAGATCAAAGATGATAGATTTGGCATCTCTGTATTTGGCGGAGAGCAGATCGAAGACA
*
83730697 TAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGAT
131 TAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAGAT
* * *
83730743 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTATATTGG
1 GATTTGGCATCTCTGTATTGGTAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTGG
* * * *
83730808 CAGAGAGCAGATCAAATATGATAGATTTGGCATATCTATATTCGGCGGAGAGCAGATCGAAGACA
66 CAGAGAGCAGATCAAAGATGATAGATTTGGCATCTCTGTATTTGGCGGAGAGCAGATCGAAGACA
* *
83730873 TAGTTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTTTAAGAT
131 TAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAGAT
* *
83730919 GATTTGGCATCTCTGTATTGGTAGAGAGCAAATCGAAGATAACAGATTTGACATCTCTGTATTGG
1 GATTTGGCATCTCTGTATTGGTAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTGG
* * * *
83730984 CAGAGAGCAGATCGAAGATAATAGATTTGGCGTCTCTGTA-TTGGCAGAGAGCAGATCGAAGA
66 CAGAGAGCAGATCAAAGATGATAGATTTGGCATCTCTGTATTTGGCGGAGAGCAGATCGAAGA
83731046 TAGAAGATTT
Statistics
Matches: 277, Mismatches: 26, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
175 20 0.07
176 257 0.93
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (176 bp):
GATTTGGCATCTCTGTATTGGTAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTGG
CAGAGAGCAGATCAAAGATGATAGATTTGGCATCTCTGTATTTGGCGGAGAGCAGATCGAAGACA
TAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAGAT
Found at i:83731287 original size:44 final size:44
Alignment explanation
Indices: 83731146--83731420 Score: 155
Period size: 44 Copynumber: 6.2 Consensus size: 44
83731136 TAAGATGATA
* * * *
83731146 TGGCATTCCTGTGTTTACAGGGAACAGATCGAAGACACAGCAGATC
1 TGGCATCCCTGTGTTTACAGGGAACAGATTGAAG--ATAGCAGATT
* * * * ** *** **
83731192 TGACATTCCTGTGCTTACAGCGAAGCAGATCAAAGATTTTA-ACA
1 TGGCATCCCTGTGTTTACAGGGAA-CAGATTGAAGATAGCAGATT
* *
83731236 TGACATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATT
1 TGGCATCCCTGTGTTTACAGGGAACAGA-TTGAAGATAGCAGATT
* * *
83731280 TGGCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATC
1 TGGCATCCCTGTGTTTACAGGGAACAGATTGAAG--ATAGCAGATT
* * * ** * **
83731326 TGACATTCCTGTGCTTACAACGAAGCAGATTAAAGATTTCAGCA--
1 TGGCATCCCTGTGTTTACAGGGAA-CAGATTGAAGATAGCAG-ATT
* * *
83731370 TGGCATCGCTGTGTTTATAGGGAACA-AGTTGAAGATAGTAGATT
1 TGGCATCCCTGTGTTTACAGGGAACAGA-TTGAAGATAGCAGATT
83731414 TGGCATC
1 TGGCATC
83731421 TCCATATTCG
Statistics
Matches: 171, Mismatches: 47, Indels: 24
0.71 0.19 0.10
Matches are distributed among these distances:
42 3 0.02
43 20 0.12
44 74 0.43
45 8 0.05
46 49 0.29
47 17 0.10
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (44 bp):
TGGCATCCCTGTGTTTACAGGGAACAGATTGAAGATAGCAGATT
Found at i:83731302 original size:134 final size:134
Alignment explanation
Indices: 83731146--83731497 Score: 481
Period size: 134 Copynumber: 2.6 Consensus size: 134
83731136 TAAGATGATA
* * *
83731146 TGGCATTCCTGTGTTTACAGGGAACAGATCGAAGACACAGCAGATCTGACATTCCTGTGCTTACA
1 TGGCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCTTACA
* *
83731211 GCGAAGCAGATCAAAGATTTTAACATGACATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCA
66 ACGAAGCAGATCAAAGATTTCAACATGACATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCA
83731276 GATT
131 GATT
83731280 TGGCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCTTACA
1 TGGCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCTTACA
* * * * *
83731345 ACGAAGCAGATTAAAGATTTCAGCATGGCATCGCTGTGTTTATAGGGAACAAGTTGAAGATAGTA
66 ACGAAGCAGATCAAAGATTTCAACATGACATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCA
83731410 GATT
131 GATT
** * * ** * * * *
83731414 TGGCATCTCCATAT-TCGACGGGGAGCAGATTAAAGACATAGTAGATCTGACCTTCATGTGTTTA
1 TGGCATC-CC-TATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCTTA
* *
83731478 CATCGAAGCAGATCCAAGAT
64 CAACGAAGCAGATCAAAGAT
83731498 GATAGATTTT
Statistics
Matches: 193, Mismatches: 23, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
134 131 0.68
135 59 0.31
136 3 0.02
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.26
Consensus pattern (134 bp):
TGGCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCTTACA
ACGAAGCAGATCAAAGATTTCAACATGACATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCA
GATT
Found at i:83731344 original size:46 final size:46
Alignment explanation
Indices: 83731149--83731344 Score: 181
Period size: 44 Copynumber: 4.3 Consensus size: 46
83731139 GATGATATGG
*
83731149 CATTCCTGTGTTTACAGGGAACAGATCGAAGACACAGCAGATCTGA
1 CATTCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGA
* * * ***
83731195 CATTCCTGTGCTTACAGCGAAGCAGATC-AA-AGATTTTA-A-CATGA
1 CATTCCTGTGTTTACAGGGAA-CAGATCGAAGACATAGCAGATC-TGA
* * * * *
83731239 CATCCCTGTGTTTATAGGGAACA-AGTTGAAG--ATAGCAGATTTGG
1 CATTCCTGTGTTTACAGGGAACAGA-TCGAAGACATAGCAGATCTGA
* *
83731283 CATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGA
1 CATTCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGA
*
83731329 CATTCCTGTGCTTACA
1 CATTCCTGTGTTTACA
83731345 ACGAAGCAGA
Statistics
Matches: 115, Mismatches: 25, Indels: 20
0.72 0.16 0.12
Matches are distributed among these distances:
42 1 0.01
43 7 0.06
44 52 0.45
45 4 0.03
46 45 0.39
47 6 0.05
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (46 bp):
CATTCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGA
Found at i:83731565 original size:45 final size:44
Alignment explanation
Indices: 83731501--83731630 Score: 134
Period size: 44 Copynumber: 2.9 Consensus size: 44
83731491 CCAAGATGAT
* * *
83731501 AGATTTTGCATCTTTGTATTAGACGGGGAGCAAATCGGAGATAAC
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGA-AAC
** ** * *
83731546 AGATTTGGCATCTCTGTATTAGACATGGAGCAGTTTGAAGAAGC
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGAAAC
* * * *
83731590 AAATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGA
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGA
83731631 TAGCAGATAT
Statistics
Matches: 69, Mismatches: 16, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
44 36 0.52
45 33 0.48
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (44 bp):
AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGAAAC
Found at i:83732021 original size:19 final size:19
Alignment explanation
Indices: 83731993--83732090 Score: 137
Period size: 19 Copynumber: 5.2 Consensus size: 19
83731983 AATCTTTAAG
*
83731993 GATATGCAATCTTAGATAT
1 GATATACAATCTTAGATAT
83732012 GATATACAATCTTAGATAT
1 GATATACAATCTTAGATAT
*
83732031 G--ATACAACCTTAGATAT
1 GATATACAATCTTAGATAT
83732048 GATATACAATCTTAGATAT
1 GATATACAATCTTAGATAT
*
83732067 GATATGCAATCTTGAAGATAT
1 GATATACAATCTT--AGATAT
83732088 GAT
1 GAT
83732091 CTTGTAATCT
Statistics
Matches: 71, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
17 16 0.23
19 46 0.65
21 9 0.13
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (19 bp):
GATATACAATCTTAGATAT
Found at i:83732023 original size:36 final size:35
Alignment explanation
Indices: 83731983--83732090 Score: 103
Period size: 36 Copynumber: 2.9 Consensus size: 35
83731973 ATGGAAATAT
83731983 AATCTTTAAGGATATGCAATCTTAGATATGATATAC
1 AATCTTTAA-GATATGCAATCTTAGATATGATATAC
*
83732019 AATC-TT-AGATATGATACAACCTTAGATATGATATAC
1 AATCTTTAAGATATG---CAATCTTAGATATGATATAC
*
83732055 AATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTT---TAAGATATGCAATCTT--AGATATGAT
83732091 CTTGTAATCT
Statistics
Matches: 59, Mismatches: 3, Indels: 16
0.76 0.04 0.21
Matches are distributed among these distances:
33 6 0.10
34 1 0.02
35 2 0.03
36 27 0.46
37 1 0.02
38 6 0.10
40 10 0.17
41 6 0.10
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATATAC
Found at i:83736278 original size:25 final size:25
Alignment explanation
Indices: 83736215--83736278 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
83736205 ATATATATGT
*
83736215 ATATTATGTATAT-TTTCTTTTTTA
1 ATATTATGTATATATTTCTTTTCTA
* *
83736239 ATACTACGTATATATTT-TATTTCTA
1 ATATTATGTATATATTTCT-TTTCTA
*
83736264 TTATTATGTATATAT
1 ATATTATGTATATAT
83736279 CTTAATGCAT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
24 12 0.38
25 20 0.62
ACGTcount: A:0.30, C:0.06, G:0.05, T:0.59
Consensus pattern (25 bp):
ATATTATGTATATATTTCTTTTCTA
Found at i:83736308 original size:20 final size:22
Alignment explanation
Indices: 83736268--83736309 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
83736258 TTTCTATTAT
83736268 TATGTATATATCTTAATGCATC
1 TATGTATATATCTTAATGCATC
*
83736290 TATGTGTATATC-T-ATGCATC
1 TATGTATATATCTTAATGCATC
83736310 GTTTTATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 7 0.37
21 1 0.05
22 11 0.58
ACGTcount: A:0.29, C:0.14, G:0.12, T:0.45
Consensus pattern (22 bp):
TATGTATATATCTTAATGCATC
Found at i:83741127 original size:3 final size:3
Alignment explanation
Indices: 83741119--83741152 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
83741109 TTAAATCCAA
83741119 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
83741153 TCATGGAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:83742955 original size:66 final size:66
Alignment explanation
Indices: 83742849--83742980 Score: 210
Period size: 66 Copynumber: 2.0 Consensus size: 66
83742839 ATTCATATAT
* * * *
83742849 CATTCATAACACATTTAATTAGGAGTATTTGATTCATTTCGATCATAGCATCCTAATTATTTGAC
1 CATTCATAACACATCTAATTAAGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGAC
83742914 A
66 A
* *
83742915 CATTCATAACACATCTACTTAAGAGCATTTGATTCATTTCGATCATAGCATCGTAATCATTTGAC
1 CATTCATAACACATCTAATTAAGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGAC
83742980 A
66 A
83742981 TAAGCATAAA
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (66 bp):
CATTCATAACACATCTAATTAAGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGAC
A
Found at i:83743144 original size:43 final size:44
Alignment explanation
Indices: 83743088--83743195 Score: 132
Period size: 43 Copynumber: 2.4 Consensus size: 44
83743078 GTGATGAGCT
83743088 TTAACCTCCTAAGCAGTAGGGTAACAAGCCG-A-A-TTTACAGACC
1 TTAACC-CCTAAGCAGTAGGGTAACAAGCCGAAGATTTTA-AGACC
* * *
83743131 TTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTTAAGATC
1 TT-AACCCCTAAGCAGTAGGGTAACAAGCCGAAGATTTTAAGACC
83743176 TTAACCCCTTAAGCAGTAGG
1 TTAACCCC-TAAGCAGTAGG
83743196 AAAACAGATC
Statistics
Matches: 57, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
43 24 0.42
44 11 0.19
45 18 0.32
46 4 0.07
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.23
Consensus pattern (44 bp):
TTAACCCCTAAGCAGTAGGGTAACAAGCCGAAGATTTTAAGACC
Found at i:83743246 original size:44 final size:42
Alignment explanation
Indices: 83743130--83743333 Score: 119
Period size: 44 Copynumber: 4.7 Consensus size: 42
83743120 ATTTACAGAC
* * ** *
83743130 CTTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTTAAGAT
1 CTTAAACCCCTAAGCAGTAGGGGAACAGATC-G-AGA--CGAAGGT
** *
83743175 CTT-AACCCCTTAAGCAGTAGGAAAACAGATCGAGGACGAAGGG
1 CTTAAACCCC-TAAGCAGTAGGGGAACAGATCGA-GACGAAGGT
* * * *
83743218 CTTTAAACCCCTAAGCAGTAGGGGAACAGGTTGA-ACTTACAGAT
1 C-TTAAACCCCTAAGCAGTAGGGGAACAGATCGAGAC-GA-AGGT
* * *
83743262 CTT-AACACCCTAAGTAGTAGGGGAACAGATCGAAGATGATGGT
1 CTTAAAC-CCCTAAGCAGTAGGGGAACAGATCG-AGACGAAGGT
* *
83743305 CCTTAACCCCCTAAGCAGTAGGGTAACAG
1 -CTTAAACCCCTAAGCAGTAGGGGAACAG
83743334 GCTAGAAATT
Statistics
Matches: 123, Mismatches: 24, Indels: 25
0.72 0.14 0.15
Matches are distributed among these distances:
42 5 0.04
43 31 0.25
44 55 0.45
45 31 0.25
46 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.20
Consensus pattern (42 bp):
CTTAAACCCCTAAGCAGTAGGGGAACAGATCGAGACGAAGGT
Found at i:83743298 original size:132 final size:133
Alignment explanation
Indices: 83743034--83743289 Score: 340
Period size: 132 Copynumber: 1.9 Consensus size: 133
83743024 GATCGGTGAA
* *
83743034 TTTACAGATCTTAACCCCCTAAACAGTAGGAAAACAGATCGAAGGTGATGAGCTTTAACCTCCTA
1 TTTACAGATCTTAACCCCCTAAACAGTAGGAAAACAGATCGAAGGCGAAGAGCTTTAACCTCCTA
* * *
83743099 AGCAGTAGGGTAACAAGCCGAATTTACAGACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAA
66 AGCAGTAGGGGAACAAGCCGAACTTACAGACCTTAAACCCCTAAGCAGTAGGGGAACAGGCTGAA
83743164 GAT
131 GAT
* * *
83743167 TTTA-AGATCTTAACCCCTTAAGCAGTAGGAAAACAGATCG-AGGACGAAGGGCTTTAAACC-CC
1 TTTACAGATCTTAACCCCCTAAACAGTAGGAAAACAGATCGAAGG-CGAAGAGCTTT-AACCTCC
* ** * *
83743229 TAAGCAGTAGGGGAACAGGTTGAACTTACAGATCTT-AACACCCTAAGTAGTAGGGGAACAG
64 TAAGCAGTAGGGGAACAAGCCGAACTTACAGACCTTAAAC-CCCTAAGCAGTAGGGGAACAG
83743290 ATCGAAGATG
Statistics
Matches: 107, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
131 6 0.06
132 93 0.87
133 8 0.07
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (133 bp):
TTTACAGATCTTAACCCCCTAAACAGTAGGAAAACAGATCGAAGGCGAAGAGCTTTAACCTCCTA
AGCAGTAGGGGAACAAGCCGAACTTACAGACCTTAAACCCCTAAGCAGTAGGGGAACAGGCTGAA
GAT
Found at i:83743316 original size:87 final size:89
Alignment explanation
Indices: 83743129--83743336 Score: 262
Period size: 87 Copynumber: 2.4 Consensus size: 89
83743119 AATTTACAGA
*
83743129 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTTAAGATCTTAACCCCTTAAGCAGTA
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATCTTAAGATCTTAACCCCTTAAGCAGTA
*
83743194 GGAAAACAGATCGAGGACGAAGGG
66 GGAAAACAGATCGAAGACGAAGGG
* * * *
83743218 CTTTAAACCCCTAAGCAGTAGGGGAACAGGTTG-A-A-CTTACAGATCTTAACACCC-TAAGTAG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATCTTA-AGATCTTAAC-CCCTTAAGCAG
** * * *
83743279 TAGGGGAACAGATCGAAGATGATGGT
64 TAGGAAAACAGATCGAAGACGAAGGG
*
83743305 CCTTAACCCCCTAAGCAGTAGGGTAACAGGCT
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCT
83743337 AGAAATTACA
Statistics
Matches: 102, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
86 3 0.03
87 65 0.64
88 4 0.04
89 30 0.29
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (89 bp):
CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATCTTAAGATCTTAACCCCTTAAGCAGTA
GGAAAACAGATCGAAGACGAAGGG
Found at i:83743316 original size:132 final size:131
Alignment explanation
Indices: 83743039--83743326 Score: 334
Period size: 132 Copynumber: 2.2 Consensus size: 131
83743029 GTGAATTTAC
* * *
83743039 AGATCTTAACCCCCTAAACAGTAGGAAAACAGATCGAAGGTGATGAGCTTTAACCTCCTAAGCAG
1 AGATCTTAACCCCCTAAGCAGTAGGAAAACAGATCGAAGGCGAAGAGCTTTAACCTCCTAAGCAG
* * *
83743104 TAGGGTAACAAGCCGAATTTACAGACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTT
66 TAGGGGAACAAGCCGAACTTACAGACCTTAAACCCCTAAGCAGTAGGGGAACAGGCTGAAGA-TT
*
83743169 TA
130 GA
* *
83743171 AGATCTTAACCCCTTAAGCAGTAGGAAAACAGATCG-AGGACGAAGGGCTTTAAACC-CCTAAGC
1 AGATCTTAACCCCCTAAGCAGTAGGAAAACAGATCGAAGG-CGAAGAGCTTT-AACCTCCTAAGC
* ** * * *
83743234 AGTAGGGGAACAGGTTGAACTTACAGATCTT-AACACCCTAAGTAGTAGGGGAACA-GATCGAAG
64 AGTAGGGGAACAAGCCGAACTTACAGACCTTAAAC-CCCTAAGCAGTAGGGGAACAGGCT-GAAG
83743297 A-TGA
127 ATTGA
* *
83743301 TGGTCCTTAACCCCCTAAGCAGTAGG
1 AGAT-CTTAACCCCCTAAGCAGTAGG
83743327 GTAACAGGCT
Statistics
Matches: 133, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
130 4 0.03
131 28 0.21
132 97 0.73
133 4 0.03
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.20
Consensus pattern (131 bp):
AGATCTTAACCCCCTAAGCAGTAGGAAAACAGATCGAAGGCGAAGAGCTTTAACCTCCTAAGCAG
TAGGGGAACAAGCCGAACTTACAGACCTTAAACCCCTAAGCAGTAGGGGAACAGGCTGAAGATTG
A
Found at i:83748071 original size:43 final size:44
Alignment explanation
Indices: 83748000--83748134 Score: 184
Period size: 43 Copynumber: 3.1 Consensus size: 44
83747990 TATCGAAATG
* *
83748000 TGATATTCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * *
83748044 TGATA-TCGGGCTTTGAGCTTAGTAGGCTATGATGCCGGTGAAA
1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
*
83748087 T-ATTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGA-TATTCG-GGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
83748132 TGA
1 TGA
83748135 AATGTTATGT
Statistics
Matches: 78, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
42 1 0.01
43 36 0.46
44 8 0.10
45 32 0.41
46 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (44 bp):
TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:83748116 original size:45 final size:43
Alignment explanation
Indices: 83748017--83748134 Score: 166
Period size: 45 Copynumber: 2.7 Consensus size: 43
83748007 CGGGCTTCGG
*
83748017 GCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTTGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGCCTTTGA
* * *
83748060 GCTTAGTAGGCTATGATGCCGGTGAAAT-ATTATTCGAGCCTTTGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGA-TA-TCG-GCCTTTGA
83748105 GCCTAGCAGGCTATAATGCCGGTGAAATGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGA
83748135 AATGTTATGT
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
42 1 0.02
43 27 0.42
44 3 0.05
45 32 0.50
46 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (43 bp):
GCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGCCTTTGA
Found at i:83748587 original size:38 final size:38
Alignment explanation
Indices: 83748421--83748601 Score: 197
Period size: 38 Copynumber: 4.8 Consensus size: 38
83748411 CTTAAAGACT
* *
83748421 GCAGGCTATA-TGCTGGAATTATATCCGGGTTAAATCCC
1 GCAGGCT-TAGTGCTGGTATTATATTCGGGTTAAATCCC
* * * * *
83748459 GTAGGCTTCGTGCTGGTAATATATCCGTGTTAAATCCC
1 GCAGGCTTAGTGCTGGTATTATATTCGGGTTAAATCCC
* *
83748497 GCAGGCTTCGTGCTGGTAATATA-TCTGGGTTAAATCCC
1 GCAGGCTTAGTGCTGGTATTATATTC-GGGTTAAATCCC
*
83748535 GCAGGCTTCA-TGCTGGTATTATATTCGGGTTAAATCTC
1 GCAGGCTT-AGTGCTGGTATTATATTCGGGTTAAATCCC
** *
83748573 ATAGGCCTAGTGCTGGTATTATATTCGGG
1 GCAGGCTTAGTGCTGGTATTATATTCGGG
83748602 CCTTTGAGCC
Statistics
Matches: 124, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
37 3 0.02
38 119 0.96
39 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.33
Consensus pattern (38 bp):
GCAGGCTTAGTGCTGGTATTATATTCGGGTTAAATCCC
Found at i:83748702 original size:44 final size:45
Alignment explanation
Indices: 83748594--83748722 Score: 190
Period size: 45 Copynumber: 2.9 Consensus size: 45
83748584 GCTGGTATTA
* *
83748594 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGACAC
* *
83748639 TATTCGGGCCTTTGGGCCTAGCAGGCTATAATGCC-ATGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGACAC
*
83748683 TATTCAGG-CTTTCGAGCCTAGCAGGCTATAATGCCGATGA
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGATGA
83748723 AATGATAATC
Statistics
Matches: 76, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
43 4 0.05
44 35 0.46
45 37 0.49
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGACAC
Found at i:83748747 original size:44 final size:45
Alignment explanation
Indices: 83748607--83748761 Score: 124
Period size: 44 Copynumber: 3.5 Consensus size: 45
83748597 TCGGGCCTTT
* * * * * * *
83748607 GAGCCTAGCAGGCTATTATGCCGGTGAGACACTATTCGGGC-CTTT
1 GAGCCTAGCAGGCTATAATGCCGATGAAATACTAATCAGGCTC-TC
* * * *
83748652 GGGCCTAGCAGGCTATAATGCC-ATGAGATACTATTCAGGCTTTC
1 GAGCCTAGCAGGCTATAATGCCGATGAAATACTAATCAGGCTCTC
83748696 GAGCCTAGCAGGCTATAATGCCGATGAAATGA-TAATC-GG-TCCTC
1 GAGCCTAGCAGGCTATAATGCCGATGAAAT-ACTAATCAGGCT-CTC
* *
83748740 GATCCTAGCAGGCGA-AATGCCG
1 GAGCCTAGCAGGCTATAATGCCG
83748762 GTGATTTGAG
Statistics
Matches: 93, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
43 8 0.09
44 54 0.58
45 30 0.32
46 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (45 bp):
GAGCCTAGCAGGCTATAATGCCGATGAAATACTAATCAGGCTCTC
Found at i:83749011 original size:33 final size:33
Alignment explanation
Indices: 83748969--83749032 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
83748959 GTGTGAAAGT
83748969 ATGTGAAAGTATTTGAGTTAATTATGTTATATG
1 ATGTGAAAGTATTTGAGTTAATTATGTTATATG
83749002 ATGTGAAAGTATTTGAGTTAATTATGTTATA
1 ATGTGAAAGTATTTGAGTTAATTATGTTATA
83749033 AGAATTCAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.45
Consensus pattern (33 bp):
ATGTGAAAGTATTTGAGTTAATTATGTTATATG
Found at i:83750251 original size:17 final size:18
Alignment explanation
Indices: 83750225--83750276 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 18
83750215 GTTGTGCTTA
83750225 ATACTATATTATGCATAT
1 ATACTATATTATGCATAT
*
83750243 ATA-TATATT-TTCA-AT
1 ATACTATATTATGCATAT
*
83750258 A-ACTATATTATGTATAT
1 ATACTATATTATGCATAT
83750275 AT
1 AT
83750277 TTCATATATA
Statistics
Matches: 27, Mismatches: 3, Indels: 8
0.71 0.08 0.21
Matches are distributed among these distances:
14 1 0.04
15 9 0.33
16 5 0.19
17 9 0.33
18 3 0.11
ACGTcount: A:0.40, C:0.08, G:0.04, T:0.48
Consensus pattern (18 bp):
ATACTATATTATGCATAT
Found at i:83750295 original size:30 final size:30
Alignment explanation
Indices: 83750261--83750361 Score: 83
Period size: 30 Copynumber: 3.6 Consensus size: 30
83750251 TTTCAATAAC
*
83750261 TATATTATGTATATATTTCATATATATATA
1 TATATCATGTATATATTTCATATATATATA
83750291 TATATCATGTATATA---CAT-T-T-TA-A
1 TATATCATGTATATATTTCATATATATATA
* * * * *
83750314 TATCTCATATATATTTTTTATATATATATG
1 TATATCATGTATATATTTCATATATATATA
*
83750344 TATATTATGTATAT-TTTC
1 TATATCATGTATATATTTC
83750362 TTTTTTAATA
Statistics
Matches: 54, Mismatches: 10, Indels: 15
0.68 0.13 0.19
Matches are distributed among these distances:
23 13 0.24
24 2 0.04
25 1 0.02
26 3 0.06
27 4 0.07
28 1 0.02
29 5 0.09
30 25 0.46
ACGTcount: A:0.36, C:0.06, G:0.04, T:0.54
Consensus pattern (30 bp):
TATATCATGTATATATTTCATATATATATA
Found at i:83750304 original size:21 final size:21
Alignment explanation
Indices: 83750280--83750357 Score: 52
Period size: 23 Copynumber: 3.7 Consensus size: 21
83750270 TATATATTTC
83750280 ATATATATATATATATCATGT
1 ATATATATATATATATCATGT
* * * *
83750301 ATATACATTTTAATATCTCATAT
1 ATATATA-TAT-ATATATCATGT
* *
83750324 ATATTTTTTATATATAT-ATGT
1 ATA-TATATATATATATCATGT
*
83750345 ATAT-TATGTATAT
1 ATATATATATATAT
83750358 TTTCTTTTTT
Statistics
Matches: 42, Mismatches: 12, Indels: 8
0.68 0.19 0.13
Matches are distributed among these distances:
19 7 0.17
20 1 0.02
21 12 0.29
22 7 0.17
23 14 0.33
24 1 0.02
ACGTcount: A:0.38, C:0.05, G:0.04, T:0.53
Consensus pattern (21 bp):
ATATATATATATATATCATGT
Found at i:83750384 original size:26 final size:25
Alignment explanation
Indices: 83750353--83750408 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
83750343 GTATATTATG
* *
83750353 TATATTTTCTTTTTTAATACTACGTA
1 TATATTTT-ATTTCTAATACTACGTA
* *
83750379 TATATTTTATTTCTATTATTACGTA
1 TATATTTTATTTCTAATACTACGTA
83750404 TATAT
1 TATAT
83750409 CTTAATGCAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 18 0.69
26 8 0.31
ACGTcount: A:0.29, C:0.09, G:0.04, T:0.59
Consensus pattern (25 bp):
TATATTTTATTTCTAATACTACGTA
Found at i:83753522 original size:39 final size:39
Alignment explanation
Indices: 83753478--83753554 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
83753468 CAATTTGGGG
83753478 TAAGGATTTCTTTACAATGGGAGGCAATATAATGTCACT
1 TAAGGATTTCTTTACAATGGGAGGCAATATAATGTCACT
*
83753517 TAAGGATTTCTTTACAATGGGAGGTAATATAATGTCAC
1 TAAGGATTTCTTTACAATGGGAGGCAATATAATGTCAC
83753555 CATCACCTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.34
Consensus pattern (39 bp):
TAAGGATTTCTTTACAATGGGAGGCAATATAATGTCACT
Found at i:83758381 original size:14 final size:12
Alignment explanation
Indices: 83758351--83758381 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
83758341 CCTCACACGC
83758351 CTGTGTGCCAGG
1 CTGTGTGCCAGG
*
83758363 CTGTGTGCTAGG
1 CTGTGTGCCAGG
83758375 CTGTGTG
1 CTGTGTG
83758382 AAACCTAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.06, C:0.19, G:0.42, T:0.32
Consensus pattern (12 bp):
CTGTGTGCCAGG
Found at i:83759550 original size:158 final size:158
Alignment explanation
Indices: 83759262--83759574 Score: 554
Period size: 158 Copynumber: 2.0 Consensus size: 158
83759252 TCATGTATGA
* * *
83759262 ATTCAACAATTAATAAATTTCGTGTACATGTAACATCTATATCGTGTATCCGTATATCATATATA
1 ATTCAACAATTAATAAATTTCATGTACATGTAACATCTATACCATGTATCCGTATATCATATATA
*
83759327 AACTATTTCCATGTAAATACCTGTACTAGTTCGTATTGAACTTGTATAATCCCATAATAACACTA
66 AACTATTTCCATGTAAATACCTGTACTAGTTCATATTGAACTTGTATAATCCCATAATAACACTA
83759392 TGCTCGTTGAACCACTTAGAATATCGTT
131 TGCTCGTTGAACCACTTAGAATATCGTT
*
83759420 ATTCAACAATTAATAAATTTCATGTACATGTAACATCTATACCATTTATCCGTATATCATATATA
1 ATTCAACAATTAATAAATTTCATGTACATGTAACATCTATACCATGTATCCGTATATCATATATA
* * *
83759485 GACTATTTCCATGTAAATACCTGTACTAGTTCATATTGGACTTGTATAATCCCGTAATAACACTA
66 AACTATTTCCATGTAAATACCTGTACTAGTTCATATTGAACTTGTATAATCCCATAATAACACTA
83759550 TGCTCGTTGAACCACTTAGAATATC
131 TGCTCGTTGAACCACTTAGAATATC
83759575 ATTAGATACG
Statistics
Matches: 147, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
158 147 1.00
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.36
Consensus pattern (158 bp):
ATTCAACAATTAATAAATTTCATGTACATGTAACATCTATACCATGTATCCGTATATCATATATA
AACTATTTCCATGTAAATACCTGTACTAGTTCATATTGAACTTGTATAATCCCATAATAACACTA
TGCTCGTTGAACCACTTAGAATATCGTT
Found at i:83768934 original size:25 final size:25
Alignment explanation
Indices: 83768906--83768953 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
83768896 AGCTCCTTCA
*
83768906 AGCTGAATAACGGTAAGCTCATATG
1 AGCTGAATAACGATAAGCTCATATG
* *
83768931 AGCTGAGTATCGATAAGCTCATA
1 AGCTGAATAACGATAAGCTCATA
83768954 AGAGGTGGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (25 bp):
AGCTGAATAACGATAAGCTCATATG
Found at i:83775424 original size:165 final size:161
Alignment explanation
Indices: 83775242--83775568 Score: 618
Period size: 165 Copynumber: 2.0 Consensus size: 161
83775232 GAAAAATTTG
83775242 TGCACAAATTTTTAACAAATATATATAAATAAAAATATGAGTTTCTTATCCTCTAGTTAATTCTA
1 TGCACAAATTTTTAACAAATATATATAAATAAAAATATGAGTTTCTTATCCTCTAGTTAATTCTA
83775307 TTAAGTTCACCATGAATTCCTTTGGATAAGGAGTTCAGCCAGACATAAATTATTTATTGCTCCCA
66 TTAAGTTCACCATGAATTCCTTTGGATAAGGAGTTCAG-C---CATAAATTATTTATTGCTCCCA
83775372 ACCACCATTTGTGGAACTTCTCCACGTAAGTGCCC
127 ACCACCATTTGTGGAACTTCTCCACGTAAGTGCCC
83775407 TGCACAAATTTTTAACAAATATATATAAATAAAAATATGAGTTTCTTATCCTCTAGTTAATTCTA
1 TGCACAAATTTTTAACAAATATATATAAATAAAAATATGAGTTTCTTATCCTCTAGTTAATTCTA
83775472 TTAAGTTCACCATGAATTCCTTTGGATAAGGAGTTCAGCCATAAATTATTTATTGCTCCCAACCA
66 TTAAGTTCACCATGAATTCCTTTGGATAAGGAGTTCAGCCATAAATTATTTATTGCTCCCAACCA
83775537 CCATTTGTGGAACTTCTCCACGTAAGTGCCC
131 CCATTTGTGGAACTTCTCCACGTAAGTGCCC
83775568 T
1 T
83775569 AATATCCGTG
Statistics
Matches: 162, Mismatches: 0, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
161 58 0.36
164 1 0.01
165 103 0.64
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (161 bp):
TGCACAAATTTTTAACAAATATATATAAATAAAAATATGAGTTTCTTATCCTCTAGTTAATTCTA
TTAAGTTCACCATGAATTCCTTTGGATAAGGAGTTCAGCCATAAATTATTTATTGCTCCCAACCA
CCATTTGTGGAACTTCTCCACGTAAGTGCCC
Found at i:83776263 original size:21 final size:21
Alignment explanation
Indices: 83776237--83776382 Score: 193
Period size: 21 Copynumber: 6.7 Consensus size: 21
83776227 CGGAGGTAAA
*
83776237 GGAGGGTATGGAGGTGGGCAC
1 GGAGGGTATGGTGGTGGGCAC
*
83776258 GGAGGGTATGGAGGTGGGCAC
1 GGAGGGTATGGTGGTGGGCAC
*
83776279 GGAGGGTATGGTGGTGGACAC
1 GGAGGGTATGGTGGTGGGCAC
*
83776300 GGAGGGTATGGTGGTGGACAC
1 GGAGGGTATGGTGGTGGGCAC
83776321 GGAGGGTATGGTGGTGGTGGCCAC
1 GGAGGGTATGGTGGT-G-GG-CAC
83776345 GGAGGGTATGGTGGTGGTGGCCAC
1 GGAGGGTATGGTGGT-G-GG-CAC
*
83776369 GGAGGATATGGTGG
1 GGAGGGTATGGTGG
83776383 CGGTGGACAT
Statistics
Matches: 118, Mismatches: 4, Indels: 3
0.94 0.03 0.02
Matches are distributed among these distances:
21 76 0.64
22 1 0.01
23 1 0.01
24 40 0.34
ACGTcount: A:0.17, C:0.10, G:0.55, T:0.18
Consensus pattern (21 bp):
GGAGGGTATGGTGGTGGGCAC
Found at i:83781684 original size:18 final size:17
Alignment explanation
Indices: 83781657--83781691 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
83781647 ATAATACTCA
83781657 GACTTTAACAACTAACT
1 GACTTTAACAACTAACT
*
83781674 GACTATTAACAGCTAACT
1 GACT-TTAACAACTAACT
83781692 AACAGGAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.29
Consensus pattern (17 bp):
GACTTTAACAACTAACT
Found at i:83783277 original size:16 final size:17
Alignment explanation
Indices: 83783224--83783301 Score: 67
Period size: 16 Copynumber: 4.8 Consensus size: 17
83783214 GATTGATTTA
* *
83783224 TATTTT-ATATATAAAT
1 TATTTTAATATTTAATT
*
83783240 TATTTAAATA-TT-ATT
1 TATTTTAATATTTAATT
*
83783255 TAATTTAATATTTAATT
1 TATTTTAATATTTAATT
*
83783272 T-TTTTAATATTTTATT
1 TATTTTAATATTTAATT
83783288 TATTATTAAT-TTTA
1 TATT-TTAATATTTA
83783302 CAAAAAATTA
Statistics
Matches: 49, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
15 10 0.20
16 22 0.45
17 12 0.24
18 5 0.10
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
TATTTTAATATTTAATT
Found at i:83787108 original size:20 final size:20
Alignment explanation
Indices: 83787083--83787128 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
83787073 ATACGCGGCA
83787083 CATTTATGCTAGCCCGAATT
1 CATTTATGCTAGCCCGAATT
83787103 CATTTATGCTAGCCCGAATT
1 CATTTATGCTAGCCCGAATT
*
83787123 CCTTTA
1 CATTTA
83787129 AGCATATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (20 bp):
CATTTATGCTAGCCCGAATT
Found at i:83789172 original size:18 final size:18
Alignment explanation
Indices: 83789149--83789236 Score: 72
Period size: 18 Copynumber: 4.9 Consensus size: 18
83789139 CGTTTACGGT
*
83789149 ACTATTTACGTATACATC
1 ACTATTCACGTATACATC
**
83789167 ACTATTCACGTATATGGT-
1 ACTATTCACGTATA-CATC
* * *
83789185 ACTATTTATGTATACAGC
1 ACTATTCACGTATACATC
*
83789203 ACTATTCACGTATACGGT-
1 ACTATTCACGTATAC-ATC
*
83789221 ACTGTTCACGTATACA
1 ACTATTCACGTATACA
83789237 GTAGTTGGGA
Statistics
Matches: 53, Mismatches: 14, Indels: 7
0.72 0.19 0.09
Matches are distributed among these distances:
18 52 0.98
19 1 0.02
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.36
Consensus pattern (18 bp):
ACTATTCACGTATACATC
Found at i:83789198 original size:36 final size:36
Alignment explanation
Indices: 83789143--83789237 Score: 145
Period size: 36 Copynumber: 2.6 Consensus size: 36
83789133 TACGACCGTT
*
83789143 TACGGTACTATTTACGTATACATCACTATTCACGTA
1 TACGGTACTATTTACGTATACAGCACTATTCACGTA
* *
83789179 TATGGTACTATTTATGTATACAGCACTATTCACGTA
1 TACGGTACTATTTACGTATACAGCACTATTCACGTA
* *
83789215 TACGGTACTGTTCACGTATACAG
1 TACGGTACTATTTACGTATACAG
83789238 TAGTTGGGAT
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 52 1.00
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (36 bp):
TACGGTACTATTTACGTATACAGCACTATTCACGTA
Found at i:83796657 original size:31 final size:29
Alignment explanation
Indices: 83796600--83796657 Score: 71
Period size: 31 Copynumber: 1.9 Consensus size: 29
83796590 GTAAATTTAT
* * *
83796600 AATTTAGTCTCTATATTTTTGTTTTCATG
1 AATTTAGTCTCTACATTTTAGATTTCATG
83796629 AATTTAGTCCCTCTACATTTTAGATTTCA
1 AATTTAGT--CTCTACATTTTAGATTTCA
83796658 AAATTAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 8 0.33
31 16 0.67
ACGTcount: A:0.24, C:0.16, G:0.09, T:0.52
Consensus pattern (29 bp):
AATTTAGTCTCTACATTTTAGATTTCATG
Found at i:83797697 original size:16 final size:15
Alignment explanation
Indices: 83797676--83797723 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
83797666 GATGTGAATA
83797676 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
83797692 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
83797707 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
83797723 A
1 A
83797724 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:83797699 original size:24 final size:24
Alignment explanation
Indices: 83797672--83797727 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
83797662 TAATGATGTG
*
83797672 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
83797696 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
83797720 AATAATAA
1 AATAATAA
83797728 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:83797706 original size:8 final size:8
Alignment explanation
Indices: 83797672--83797723 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
83797662 TAATGATGTG
*
83797672 AATAATAA
1 AATATTAA
83797680 AATATATAA
1 AATAT-TAA
83797689 AATA-TAA
1 AATATTAA
83797696 AATATTAA
1 AATATTAA
*
83797704 AATATCAA
1 AATATTAA
*
83797712 AATATTAG
1 AATATTAA
83797720 AATA
1 AATA
83797724 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:83797976 original size:15 final size:14
Alignment explanation
Indices: 83797955--83798001 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
83797945 ATAACATGTA
83797955 AAAAATATATATAT
1 AAAAATATATATAT
83797969 AAATAATATA-ATATT
1 AAA-AATATATATA-T
* *
83797984 AAAGATATATACAT
1 AAAAATATATATAT
83797998 AAAA
1 AAAA
83798002 TAGTATAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
14 15 0.56
15 12 0.44
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (14 bp):
AAAAATATATATAT
Found at i:83797994 original size:31 final size:31
Alignment explanation
Indices: 83797932--83798009 Score: 79
Period size: 31 Copynumber: 2.5 Consensus size: 31
83797922 TATAGTTAAG
* *
83797932 ATATATACATAAGATAACATGTAAAAAATAT
1 ATATATAAATAATATAACATGTAAAAAATAT
* *
83797963 ATATATAAATAATATAATAT-T-AAAGATAT
1 ATATATAAATAATATAACATGTAAAAAATAT
* *
83797992 ATACATAAAATAGTATAA
1 ATATAT-AAATAATATAA
83798010 AATATATATA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
29 12 0.30
30 11 0.28
31 17 0.43
ACGTcount: A:0.59, C:0.04, G:0.05, T:0.32
Consensus pattern (31 bp):
ATATATAAATAATATAACATGTAAAAAATAT
Found at i:83797999 original size:25 final size:25
Alignment explanation
Indices: 83797873--83798092 Score: 97
Period size: 25 Copynumber: 9.0 Consensus size: 25
83797863 TAAATACGTG
* *
83797873 ATAATATTAAAAATATGTACATAAT
1 ATAATATTAAAGATATATACATAAT
* * * *
83797898 ATAGTGTTAAAAATACATACATAAT
1 ATAATATTAAAGATATATACATAAT
* *
83797923 AT-A-GTT-AAGATATATACATAAG
1 ATAATATTAAAGATATATACATAAT
* * *
83797945 ATAACATGTAAAAAATATATATATAAATAAT
1 ATAATAT-T----AA-AGATATATACATAAT
*
83797976 ATAATATTAAAGATATATACATAAA
1 ATAATATTAAAGATATATACATAAT
* * * **
83798001 ATAGTATAAAATATATATATGTAAT
1 ATAATATTAAAGATATATACATAAT
* *
83798026 ATAGA-ATTTAA-A-ATATACCTAAT
1 ATA-ATATTAAAGATATATACATAAT
*
83798049 AT-AT-TAAAAGA-ATAT--ATAAT
1 ATAATATTAAAGATATATACATAAT
*
83798069 ATAATATT-AAGAAATATA-ATAAT
1 ATAATATTAAAGATATATACATAAT
83798092 A
1 A
83798093 ACAAAAAAGG
Statistics
Matches: 148, Mismatches: 31, Indels: 34
0.69 0.15 0.16
Matches are distributed among these distances:
20 6 0.04
21 10 0.07
22 25 0.17
23 21 0.14
24 2 0.01
25 62 0.42
26 2 0.01
30 2 0.01
31 18 0.12
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (25 bp):
ATAATATTAAAGATATATACATAAT
Found at i:83798070 original size:20 final size:20
Alignment explanation
Indices: 83798045--83798089 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
83798035 AAAATATACC
*
83798045 TAATATATTA-AAAGAATATA
1 TAATATAATATAAAGAA-ATA
*
83798065 TAATATAATATTAAGAAATA
1 TAATATAATATAAAGAAATA
83798085 TAATA
1 TAATA
83798090 ATAACAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (20 bp):
TAATATAATATAAAGAAATA
Found at i:83798621 original size:30 final size:30
Alignment explanation
Indices: 83798586--83798751 Score: 245
Period size: 30 Copynumber: 5.7 Consensus size: 30
83798576 GTACAAGTGA
*
83798586 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
*
83798616 TGGTGGAAAAAGAGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
*
83798646 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
*
83798676 TGGTGGAAAA--AG-AG-T-G-GGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
*
83798700 TGGTGGAAAAAGAGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
83798730 TGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGAAAAGGAGTGGCTAGT
83798752 TGAGAAAAGT
Statistics
Matches: 122, Mismatches: 8, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
24 18 0.15
25 1 0.01
26 3 0.02
27 2 0.02
28 2 0.02
29 1 0.01
30 95 0.78
ACGTcount: A:0.25, C:0.03, G:0.48, T:0.24
Consensus pattern (30 bp):
TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
Found at i:83798676 original size:60 final size:60
Alignment explanation
Indices: 83798586--83798751 Score: 263
Period size: 54 Copynumber: 2.9 Consensus size: 60
83798576 GTACAAGTGA
83798586 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGG
83798646 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGA---G-T-G-GGAGTTGG
1 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGG
* * *
83798700 TGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGT
83798752 TGAGAAAAGT
Statistics
Matches: 97, Mismatches: 3, Indels: 12
0.87 0.03 0.11
Matches are distributed among these distances:
54 48 0.49
55 1 0.01
56 1 0.01
57 2 0.02
58 1 0.01
59 1 0.01
60 43 0.44
ACGTcount: A:0.25, C:0.03, G:0.48, T:0.24
Consensus pattern (60 bp):
TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGG
Found at i:83798697 original size:24 final size:24
Alignment explanation
Indices: 83798668--83798716 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
83798658 TGTGGCTAGT
83798668 GGAGTTGGTGGTGGAAAAAGAGTG
1 GGAGTTGGTGGTGGAAAAAGAGTG
83798692 GGAGTTGGTGGTGGAAAAAGAGTG
1 GGAGTTGGTGGTGGAAAAAGAGTG
83798716 G
1 G
83798717 CTAGTGGAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.29, C:0.00, G:0.51, T:0.20
Consensus pattern (24 bp):
GGAGTTGGTGGTGGAAAAAGAGTG
Found at i:83799521 original size:14 final size:14
Alignment explanation
Indices: 83799502--83799551 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
83799492 GAGTTAATTT
* *
83799502 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
83799516 TTGAAAAAACAGAAA
1 TTG-AAAAACAGAAA
*
83799531 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
83799545 TT-AAAAA
1 TTGAAAAA
83799552 GACCTCAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
15 12 0.39
ACGTcount: A:0.64, C:0.04, G:0.12, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:83799690 original size:75 final size:75
Alignment explanation
Indices: 83799531--83799772 Score: 290
Period size: 76 Copynumber: 3.2 Consensus size: 75
83799521 AAAACAGAAA
* * ** *
83799531 TTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTATCGCAATAT
1 TTGAAAAACAGAAATTAAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTATCGCAATAT
*
83799596 GAGTT-A-ATTT
64 GAGTTGATTTTT
* * * * *
83799606 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCACAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTATCGCAATATGA
83799671 GTTGATTTTT
66 GTTGATTTTT
** *
83799681 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAA-TTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTATCGCAATATG
83799746 AGTTGATTTTT
65 AGTTGATTTTT
* **
83799757 TTTACGAACAGAAATT
1 TTGAAAAACAGAAATT
83799773 GAAGGACAGA
Statistics
Matches: 143, Mismatches: 21, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
73 33 0.23
74 1 0.01
75 43 0.30
76 66 0.46
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.29
Consensus pattern (75 bp):
TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTATCGCAATATGA
GTTGATTTTT
Found at i:83799802 original size:240 final size:239
Alignment explanation
Indices: 83799523--83801096 Score: 2559
Period size: 240 Copynumber: 6.7 Consensus size: 239
83799513 AAATTGAAAA
* * *
83799523 AACAGAAATTGAA-AAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTA
1 AACAGAAATTGAAGAA-CAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTC
83799587 TCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAA
65 TCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAA
* *
83799652 CTCACCTTTCACAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTC
130 CTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTC
*
83799717 CTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTACG
193 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACG
* *
83799763 AACAGAAATTGAAGGACAGAAATTGAAAAGACCTCAGCATGTGAACCGAGGCTCAACTCACCTCT
1 AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
83799828 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
66 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
* *
83799893 TCACCTTTCACAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCC
131 TCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCC
*
83799958 TAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACG
194 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACG
83800004 AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
1 AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
*
83800069 CACAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
66 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
83800134 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTG
131 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTG
83800199 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTACG
196 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACG
83800242 AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
1 AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
83800307 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
66 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
*
83800372 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAAAGAAA-TTAAAAATACCTCAGCGTGTCCT
131 TCACCTCTCGCAATATGAGTTGATTTTTG-AAAAACAGAAATTTAAAAATACCTCAGCGTGTCCT
*
83800436 GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTTACG
195 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACG
*
83800481 AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTTAACTCACCTCT
1 AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
83800546 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
66 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
* *
83800611 TCACCTCTCGCAATATGAGTCGATTTTTGAAAAATAGAAATTTAAAAATACCTCAGCGTGTCCTG
131 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTG
*
83800676 AGGCTCAATTCACCTCTCGCAATATGAGTTGATTTTTTTTTTACG
196 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTTACG
*
83800721 AACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
1 AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
* **
83800786 CGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAAC
66 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
* * * *
83800851 TCACCTCTCGCAATATGGGTTGATTTTTGACAAACAGAAA-TTGAAATTACCTCAGCGTGTCCTG
131 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTG
83800915 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-----TTTT---
196 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACG
* * *
83800951 -------A---AA-AACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCT
1 AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
* * * ** * * ** *
83801005 TGCAATATGAGCT-ACTTTTGATGAACATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAAC
66 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
83801069 TCACCTCTCGCAATATGAGTTGATTTTT
131 TCACCTCTCGCAATATGAGTTGATTTTT
83801097 TTTGAAAATC
Statistics
Matches: 1283, Mismatches: 45, Indels: 34
0.94 0.03 0.02
Matches are distributed among these distances:
218 70 0.05
219 59 0.05
220 2 0.00
223 1 0.00
233 4 0.00
238 234 0.18
239 358 0.28
240 395 0.31
241 160 0.12
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (239 bp):
AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
TCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTG
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACG
Found at i:83799922 original size:75 final size:75
Alignment explanation
Indices: 83799778--83800016 Score: 311
Period size: 76 Copynumber: 3.2 Consensus size: 75
83799768 AAATTGAAGG
* **
83799778 ACAGAAATTGAAAAGACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTT-A
1 ACAGAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
83799842 -ATTTTTGACAA
64 TTTTTTTGACAA
* * *
83799853 ACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCACAATATGAGTTGATT
1 ACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
83799918 TTTTTGAAAA
66 TTTTTGACAA
* **
83799928 ACAGAAATTTAAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 ACAGAAA-TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
* *
83799993 TTTTTTTTACGA
64 TTTTTTTGACAA
83800005 ACAGAAATTGAA
1 ACAGAAATTGAA
83800017 GAACAGAAAT
Statistics
Matches: 142, Mismatches: 18, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
73 34 0.24
74 1 0.01
75 37 0.26
76 54 0.38
77 16 0.11
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.28
Consensus pattern (75 bp):
ACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTTTTGACAA
Found at i:83800022 original size:14 final size:14
Alignment explanation
Indices: 83800003--83800030 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
83799993 TTTTTTTTAC
83800003 GAACAGAAATTGAA
1 GAACAGAAATTGAA
83800017 GAACAGAAATTGAA
1 GAACAGAAATTGAA
83800031 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:83800148 original size:73 final size:73
Alignment explanation
Indices: 83800018--83800254 Score: 321
Period size: 73 Copynumber: 3.2 Consensus size: 73
83800008 GAAATTGAAG
* ** *
83800018 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCACAATATGAGTTA
1 AACAGAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
83800083 ATTTTTGACA
64 ATTTTTGACA
* *
83800093 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAAT
*
83800158 TTTTGAAA
66 TTTTGACA
* *
83800166 AACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AACAGAAA-TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-A
* * *
83800231 TTTTTTTTACG
64 -ATTTTTGACA
83800242 AACAGAAATTGAA
1 AACAGAAATTGAA
83800255 GAACAGAAAT
Statistics
Matches: 143, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
73 52 0.36
74 51 0.36
75 26 0.18
76 14 0.10
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (73 bp):
AACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAAT
TTTTGACA
Found at i:83800260 original size:14 final size:14
Alignment explanation
Indices: 83800241--83800268 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
83800231 TTTTTTTTAC
83800241 GAACAGAAATTGAA
1 GAACAGAAATTGAA
83800255 GAACAGAAATTGAA
1 GAACAGAAATTGAA
83800269 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:83800314 original size:91 final size:88
Alignment explanation
Indices: 83800160--83800344 Score: 248
Period size: 89 Copynumber: 2.1 Consensus size: 88
83800150 GAGTTGATTT
* *
83800160 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATG
* * *
83800225 AGTTGATTTTTTTTACGAACAGAAA
66 AGTT-A-ATTTTTGACAAACAGAAA
* *
83800250 TTGAAGAACAGAAA-TTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAAT
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGC--GTG-GCCTGAGGCTCAACTCACCTCTCGCAAT
83800313 ATGAGTTAATTTTTGACAAACAGAAA
63 ATGAGTTAATTTTTGACAAACAGAAA
83800339 TTGAAA
1 TTGAAA
83800345 TTACCTCAGC
Statistics
Matches: 84, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
89 34 0.40
90 14 0.17
91 34 0.40
92 2 0.02
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.26
Consensus pattern (88 bp):
TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTAATTTTTGACAAACAGAAA
Found at i:83800337 original size:479 final size:475
Alignment explanation
Indices: 83799523--83801096 Score: 2565
Period size: 479 Copynumber: 3.3 Consensus size: 475
83799513 AAATTGAAAA
* * *
83799523 AACAGAAATTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTAT
1 AACAGAAATTGAAAA-CAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
83799588 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
65 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
* *
83799653 TCACCTTTCACAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCC
130 TCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCC
* *
83799718 TAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAACAGAAATTGAAGGACAGA
193 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAACAGAAATTGAAGAACAGA
*
83799783 AATTGAAAAGACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT
258 AATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT
* *
83799848 GACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCACAATATGAGT
323 GACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
*
83799913 TGATTTTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTC
388 TGA--TTTTTGAAAAACAGAAA-TTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
83799978 GCAATATGAGTTGATTTTTTTTTACG
450 GCAATATGAGTTGATTTTTTTTTACG
83800004 AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
1 AACAGAAATTGAA-AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
*
83800069 CACAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
65 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
83800134 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTG
130 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTG
83800199 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAACAGAAATTGAAGAACAGAAA
195 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAACAGAAATTGAAGAACAGAAA
83800264 TTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGA
260 TTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGA
83800329 CAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
325 CAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
83800394 ATTTTTGAAAAAAAAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
390 ATTTTTG-AAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
*
83800459 TATGAGTTAATTTTTTTTTACG
454 TATGAGTTGATTTTTTTTTACG
*
83800481 AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTTAACTCACCTCT
1 AACAGAAATTGAA-AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
83800546 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
65 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
* *
83800611 TCACCTCTCGCAATATGAGTCGATTTTTGAAAAATAGAAATTTAAAAATACCTCAGCGTGTCCTG
130 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTG
* *
83800676 AGGCTCAATTCACCTCTCGCAATATGAGTTGATTTTTTTTTTACGAACAGAAATTGAAAAACAGA
195 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTTACGAACAGAAATTGAAGAACAGA
*
83800741 AATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
258 AATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT
** *
83800806 GACAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGGGT
323 GACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
83800871 TGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
388 TGATTTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
83800936 ATATGAGTTGA-----TTTT---
453 ATATGAGTTGATTTTTTTTTACG
* * * *
83800951 -------A---AAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTT
1 AACAGAAATTGAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTC
* * ** * * ** *
83801006 GCAATATGAGCT-ACTTTTGATGAACATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACT
66 GCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACT
83801070 CACCTCTCGCAATATGAGTTGATTTTT
131 CACCTCTCGCAATATGAGTTGATTTTT
83801097 TTTGAAAATC
Statistics
Matches: 1045, Mismatches: 44, Indels: 31
0.93 0.04 0.03
Matches are distributed among these distances:
458 70 0.07
459 58 0.06
460 2 0.00
463 1 0.00
473 4 0.00
477 294 0.28
478 72 0.07
479 398 0.38
481 144 0.14
482 2 0.00
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (475 bp):
AACAGAAATTGAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTC
GCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGA
GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAACAGAAATTGAAGAACAGAAAT
TGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAC
AAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTTTTTACG
Found at i:83800381 original size:73 final size:74
Alignment explanation
Indices: 83800256--83800473 Score: 330
Period size: 74 Copynumber: 2.9 Consensus size: 74
83800246 GAAATTGAAG
* **
83800256 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
1 AACAGAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
*
83800321 ATTTTTG-ACA
64 ATTTTTGAAAA
* *
83800331 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAAT
83800396 TTTTGAAAA
66 TTTTGAAAA
* * *
83800405 AAAAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAAT
83800470 TTTT
66 TTTT
83800474 TTTTACGAAC
Statistics
Matches: 131, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
73 43 0.33
74 66 0.50
75 22 0.17
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (74 bp):
AACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAAT
TTTTGAAAA
Found at i:83800499 original size:14 final size:14
Alignment explanation
Indices: 83800480--83800507 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
83800470 TTTTTTTTAC
83800480 GAACAGAAATTGAA
1 GAACAGAAATTGAA
83800494 GAACAGAAATTGAA
1 GAACAGAAATTGAA
83800508 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:83800621 original size:73 final size:73
Alignment explanation
Indices: 83800489--83800712 Score: 304
Period size: 74 Copynumber: 3.0 Consensus size: 73
83800479 CGAACAGAAA
* * ** *
83800489 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTTAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
*
83800554 GAGTTAATTT
64 GAGTTGATTT
* *
83800564 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
*
83800629 GTCGATTT
66 GTTGATTT
* * * *
83800637 TTGAAAAATAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAATTCACCTCTCGCAATATG
1 TTGAAAAACAGAAA-TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
83800702 AGTTGATTT
65 AGTTGATTT
83800711 TT
1 TT
83800713 TTTTTACGAA
Statistics
Matches: 132, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
73 50 0.38
74 56 0.42
75 26 0.20
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (73 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:83800740 original size:14 final size:14
Alignment explanation
Indices: 83800721--83800749 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
83800711 TTTTTTTACG
83800721 AACAGAAATTGAAA
1 AACAGAAATTGAAA
83800735 AACAGAAATTGAAA
1 AACAGAAATTGAAA
83800749 A
1 A
83800750 GACCTCAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:83800795 original size:93 final size:92
Alignment explanation
Indices: 83800637--83800805 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 92
83800627 GAGTCGATTT
* * * *
83800637 TTGAAAAATAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAATTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATG
83800702 AGTTGATTTTTTTTTTACGAACAGAAA
66 AGTTGATTTTTTTTTTACGAACAGAAA
*
83800729 TTGAAAAACAGAAA-TTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAAT
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGC--GTG-GCCTGAGGCTCAACTCACCTCTCGCAAT
83800792 ATGAGTTGATTTTT
63 ATGAGTTGATTTTT
83800806 GACAAACAGA
Statistics
Matches: 69, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
91 14 0.20
92 13 0.19
93 40 0.58
94 2 0.03
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (92 bp):
TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTTTTTACGAACAGAAA
Found at i:83800863 original size:73 final size:73
Alignment explanation
Indices: 83800729--83801096 Score: 485
Period size: 73 Copynumber: 5.0 Consensus size: 73
83800719 CGAACAGAAA
* ** *
83800729 TTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATA
1 TTGACAAACAGAAATTGAAATTACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATA
83800793 TGAGTTGATTT
63 TGAGTTGATTT
* *
83800804 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGG
1 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
83800869 GTTGATTT
66 GTTGATTT
83800877 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
83800942 GTTGA-TT
66 GTTGATTT
* * * *
83800949 TT-AAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTTGCAATA
1 TTGACAAACAGAAATTGAAATTACCTCAGCGTGT---CCTGAGGCTCAACTCACCTCTCGCAATA
* *
83801012 TGAGCT-ACTT
63 TGAGTTGATTT
** * * **
83801022 TTGATGAACATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
83801087 GTTGATTT
66 GTTGATTT
83801095 TT
1 TT
83801097 TTTGAAAATC
Statistics
Matches: 262, Mismatches: 23, Indels: 18
0.86 0.08 0.06
Matches are distributed among these distances:
71 31 0.12
72 34 0.13
73 143 0.55
74 27 0.10
75 27 0.10
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (73 bp):
TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:83801000 original size:146 final size:144
Alignment explanation
Indices: 83800729--83801095 Score: 481
Period size: 145 Copynumber: 2.5 Consensus size: 144
83800719 CGAACAGAAA
* *
83800729 TTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAACACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATA
* * **
83800793 TGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTC
63 TGAGTTGA-TTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTCAAGGCTCAACTCACCTC
* * *
83800858 TCGCAATATGGGTTGATTT
127 TCGCAATATGAGCT-ACTT
* **
83800877 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAACACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
83800942 GTTGATTTT-AAAAACAGAAATTGAAAATACCTCAGCGTGTGAGC-CAAGGCTCAACTCACCTCT
66 GTTGATTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGT---CTCAAGGCTCAACTCACCTCT
*
83801005 TGCAATATGAGCTACTT
128 CGCAATATGAGCTACTT
** *
83801022 TTGATGAACATAAATT-AAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTGAAAA-CACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
83801086 AGTTGATTTT
65 AGTTGATTTT
83801096 TTTTGAAAAT
Statistics
Matches: 197, Mismatches: 17, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
144 32 0.16
145 74 0.38
146 63 0.32
147 1 0.01
148 27 0.14
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (144 bp):
TTGAAAAACAGAAATTGAAAACACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTCAAGGCTCAACTCACCTCTCGC
AATATGAGCTACTT
Found at i:83806059 original size:21 final size:22
Alignment explanation
Indices: 83806033--83806075 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
83806023 AATTGTTTTG
*
83806033 AATTAATTGAA-TTAAATTAAA
1 AATTAATTGAACTAAAATTAAA
*
83806054 AATTAATTTAACTAAAATTAAA
1 AATTAATTGAACTAAAATTAAA
83806076 TTAATTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (22 bp):
AATTAATTGAACTAAAATTAAA
Found at i:83807112 original size:27 final size:27
Alignment explanation
Indices: 83807082--83807161 Score: 151
Period size: 27 Copynumber: 3.0 Consensus size: 27
83807072 TGGAGGTTAT
83807082 GGAGGATACGGAGGGCGCGGTGGGTAC
1 GGAGGATACGGAGGGCGCGGTGGGTAC
*
83807109 GGAGGATACGGAGGGCGTGGTGGGTAC
1 GGAGGATACGGAGGGCGCGGTGGGTAC
83807136 GGAGGATACGGAGGGCGCGGTGGGTA
1 GGAGGATACGGAGGGCGCGGTGGGTA
83807162 TGGTGGTGGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.19, C:0.12, G:0.56, T:0.12
Consensus pattern (27 bp):
GGAGGATACGGAGGGCGCGGTGGGTAC
Found at i:83808119 original size:13 final size:14
Alignment explanation
Indices: 83808103--83808144 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
83808093 TTTCAATTTT
83808103 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
83808116 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
83808131 ATTTTAAATAATAT
1 ATTTT-AATAATAT
83808145 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:83808129 original size:16 final size:16
Alignment explanation
Indices: 83808107--83808143 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
83808097 AATTTTATTT
83808107 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
83808124 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
83808139 TAATA
1 TAATA
83808144 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:83808196 original size:15 final size:15
Alignment explanation
Indices: 83808176--83808232 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
83808166 ATTCAATAGT
83808176 AATATTTTAATAATA
1 AATATTTTAATAATA
*
83808191 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
83808210 AATATATTAATAATA
1 AATATTTTAATAATA
*
83808225 AATGTTTT
1 AATATTTT
83808233 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:83809264 original size:22 final size:23
Alignment explanation
Indices: 83809220--83809267 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
83809210 ACCAGAATCC
83809220 TTTCCCTCTCCCTCCTCTCTCTT
1 TTTCCCTCTCCCTCCTCTCTCTT
* * *
83809243 TTTCTCTCTTCCT-CTCTTTCTT
1 TTTCCCTCTCCCTCCTCTCTCTT
83809265 TTT
1 TTT
83809268 TTTCTTCTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (23 bp):
TTTCCCTCTCCCTCCTCTCTCTT
Found at i:83809776 original size:20 final size:20
Alignment explanation
Indices: 83809732--83809802 Score: 61
Period size: 20 Copynumber: 3.3 Consensus size: 20
83809722 TATTTTCTTT
** *
83809732 TTATATATTATTACTGTTATT
1 TTATAT-TTATTACTAATATA
83809753 TTATATTTATTACTAATATA
1 TTATATTTATTACTAATATA
*
83809773 TTATTATTATAGTTACTACTATA
1 TTA-TATT-TA-TTACTAATATA
83809796 TATATAT
1 T-TATAT
83809803 GTTACGTATA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
20 14 0.33
21 10 0.24
22 2 0.05
23 14 0.33
24 2 0.05
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.56
Consensus pattern (20 bp):
TTATATTTATTACTAATATA
Found at i:83809779 original size:23 final size:22
Alignment explanation
Indices: 83809730--83809796 Score: 59
Period size: 23 Copynumber: 3.0 Consensus size: 22
83809720 TTTATTTTCT
*
83809730 TTTTATATATTATTACT-GT-TA
1 TTTTATAT-TTATTACTAATATA
83809751 TTTTATATTTATTACTAATATA
1 TTTTATATTTATTACTAATATA
* *
83809773 TTATTAT-TATAGTTACTACTATA
1 TT-TTATATTTA-TTACTAATATA
83809796 T
1 T
83809797 ATATATGTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
20 8 0.21
21 9 0.23
22 7 0.18
23 15 0.38
ACGTcount: A:0.33, C:0.06, G:0.03, T:0.58
Consensus pattern (22 bp):
TTTTATATTTATTACTAATATA
Found at i:83809964 original size:22 final size:23
Alignment explanation
Indices: 83809927--83809972 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
83809917 TACACATGCA
*
83809927 TTTTTCATATTAATA-TATATATG
1 TTTTTAATATTAATATTAT-TATG
83809950 TTTTTAATATT-ATATTATTATG
1 TTTTTAATATTAATATTATTATG
83809972 T
1 T
83809973 ATATGTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (23 bp):
TTTTTAATATTAATATTATTATG
Found at i:83809991 original size:30 final size:28
Alignment explanation
Indices: 83809933--83809989 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
83809923 TGCATTTTTC
83809933 ATATTAATATATATATGTTTTTAATATT
1 ATATTAATATATATATGTTTTTAATATT
* *
83809961 ATATTATTATGTATATG-TTTTAATATT
1 ATATTAATATATATATGTTTTTAATATT
83809988 AT
1 AT
83809990 TAGCTATCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 12 0.44
28 15 0.56
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (28 bp):
ATATTAATATATATATGTTTTTAATATT
Found at i:83810367 original size:11 final size:11
Alignment explanation
Indices: 83810351--83810418 Score: 57
Period size: 11 Copynumber: 6.0 Consensus size: 11
83810341 TTATTTCCAA
83810351 TATGTATATAT
1 TATGTATATAT
*
83810362 TATGTAAATATTT
1 TATGT--ATATAT
83810375 TGATGT-TATAT
1 T-ATGTATATAT
* *
83810386 TATATATGTAT
1 TATGTATATAT
* *
83810397 TTTTTATATAT
1 TATGTATATAT
83810408 TATGTATATAT
1 TATGTATATAT
83810419 ATATTCAATA
Statistics
Matches: 44, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
10 3 0.07
11 31 0.70
13 6 0.14
14 4 0.09
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (11 bp):
TATGTATATAT
Found at i:83810409 original size:22 final size:21
Alignment explanation
Indices: 83810381--83810448 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 21
83810371 ATTTTGATGT
83810381 TATATTATATATGTATTTTTTA
1 TATATTAT-TATGTATTTTTTA
* * *
83810403 TATATTATGTATATATATATTCA
1 TATATTAT-TATGTAT-TTTTTA
83810426 -ATATTATTA-GT-TTTTTTA
1 TATATTATTATGTATTTTTTA
83810444 TATAT
1 TATAT
83810449 ACTATTCTAT
Statistics
Matches: 37, Mismatches: 7, Indels: 7
0.73 0.14 0.14
Matches are distributed among these distances:
18 4 0.11
19 5 0.14
20 1 0.03
21 2 0.05
22 21 0.57
23 4 0.11
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.60
Consensus pattern (21 bp):
TATATTATTATGTATTTTTTA
Found at i:83810958 original size:20 final size:22
Alignment explanation
Indices: 83810916--83810961 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
83810906 AAGTAGTATA
* *
83810916 TATATATTTCGACTATTTCATG
1 TATATATTTCAAATATTTCATG
83810938 TATATATTTCAAATA-TT-ATG
1 TATATATTTCAAATATTTCATG
83810958 TATA
1 TATA
83810962 GTATATTTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.32
21 2 0.09
22 13 0.59
ACGTcount: A:0.35, C:0.09, G:0.07, T:0.50
Consensus pattern (22 bp):
TATATATTTCAAATATTTCATG
Found at i:83815740 original size:46 final size:46
Alignment explanation
Indices: 83815680--83815942 Score: 395
Period size: 46 Copynumber: 5.7 Consensus size: 46
83815670 TGCCATAATG
* * * *
83815680 TCTTTCAACTATGGTATTACTCATTTTC-T-TCCATATTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATAT-CAGATTGCCATGGTA
** *
83815726 TCTTTCAACCATGGTCTTATTCATTTCATATCACATTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGATTGCCATGGTA
83815772 TCTTTCAACCATGGTCTTACACATTTCATATCAGATTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGATTGCCATGGTA
* *
83815818 TCTTTCAACCATGGTCTTACACACTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGATTGCCATGGTA
* *
83815864 TCTTTCAACCATAGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGATTGCCATGGTA
83815910 TCTTTCAACCATGGTCTTACACATTTCATATCA
1 TCTTTCAACCATGGTCTTACACATTTCATATCA
83815943 ACCATGGTCT
Statistics
Matches: 203, Mismatches: 12, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
45 4 0.02
46 198 0.98
47 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.12, T:0.39
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGATTGCCATGGTA
Found at i:83815950 original size:26 final size:26
Alignment explanation
Indices: 83815914--83815968 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
83815904 ATGGTATCTT
*
83815914 TCAACCATGGTCTTACACATTTCATA
1 TCAACCATGGTCTTAAACATTTCATA
83815940 TCAACCATGGTCTTAAACATTTCATA
1 TCAACCATGGTCTTAAACATTTCATA
83815966 TCA
1 TCA
83815969 GGTTGCCATG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.33, C:0.25, G:0.07, T:0.35
Consensus pattern (26 bp):
TCAACCATGGTCTTAAACATTTCATA
Found at i:83815960 original size:72 final size:72
Alignment explanation
Indices: 83815868--83816014 Score: 276
Period size: 72 Copynumber: 2.0 Consensus size: 72
83815858 ATGGTATCTT
*
83815868 TCAACCATAGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 TCAACCATAGTCTTAAACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
83815933 TTTCATA
66 TTTCATA
*
83815940 TCAACCATGGTCTTAAACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 TCAACCATAGTCTTAAACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
83816005 TTTCATA
66 TTTCATA
83816012 TCA
1 TCA
83816015 GGTTGCTATG
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 73 1.00
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.36
Consensus pattern (72 bp):
TCAACCATAGTCTTAAACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
TTTCATA
Found at i:83815968 original size:118 final size:118
Alignment explanation
Indices: 83815822--83816060 Score: 442
Period size: 118 Copynumber: 2.0 Consensus size: 118
83815812 ATGGTATCTT
*
83815822 TCAACCATGGTCTTACACACTTCATATCAGGTTGCCATGGTATCTTTCAACCATAGTCTTACACA
1 TCAACCATGGTCTTAAACACTTCATATCAGGTTGCCATGGTATCTTTCAACCATAGTCTTACACA
83815887 TTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
66 TTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
* *
83815940 TCAACCATGGTCTTAAACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 TCAACCATGGTCTTAAACACTTCATATCAGGTTGCCATGGTATCTTTCAACCATAGTCTTACACA
*
83816005 TTTCATATCAGGTTGCTATGGTATCTTTCAACCATGGTCTTACACATTTCATA
66 TTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
83816058 TCA
1 TCA
83816061 GAGAGCACAC
Statistics
Matches: 117, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
118 117 1.00
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.36
Consensus pattern (118 bp):
TCAACCATGGTCTTAAACACTTCATATCAGGTTGCCATGGTATCTTTCAACCATAGTCTTACACA
TTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
Found at i:83815993 original size:46 final size:46
Alignment explanation
Indices: 83815940--83816061 Score: 226
Period size: 46 Copynumber: 2.7 Consensus size: 46
83815930 ACATTTCATA
*
83815940 TCAACCATGGTCTTAAACATTTCATATCAGGTTGCCATGGTATCTT
1 TCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTT
*
83815986 TCAACCATGGTCTTACACATTTCATATCAGGTTGCTATGGTATCTT
1 TCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTT
83816032 TCAACCATGGTCTTACACATTTCATATCAG
1 TCAACCATGGTCTTACACATTTCATATCAG
83816062 AGAGCACACT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (46 bp):
TCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTT
Found at i:83817578 original size:16 final size:17
Alignment explanation
Indices: 83817557--83817591 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
83817547 TCAATAAGAT
*
83817557 TTAAT-CTATTATTTTA
1 TTAATCCTATAATTTTA
83817573 TTAATCCTATAATTTTA
1 TTAATCCTATAATTTTA
83817590 TT
1 TT
83817592 TCTAAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.60
Consensus pattern (17 bp):
TTAATCCTATAATTTTA
Found at i:83818489 original size:30 final size:30
Alignment explanation
Indices: 83818422--83818489 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
83818412 CACCCTTAAA
* * *
83818422 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
83818452 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
83818481 AGTATTTAC
1 A-TATTTAC
83818490 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:83826898 original size:89 final size:88
Alignment explanation
Indices: 83826708--83827221 Score: 460
Period size: 89 Copynumber: 5.9 Consensus size: 88
83826698 ATATTTTTAA
* * * * * *
83826708 AAAAATCAATTCATATTACGAGAAGTGAGTTGAGCCTCAGG--ACACGTTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGCTGAGGTATTTTCAAAT
* ** * *
83826771 TCTATTTTTCAGGTAATATTTTTC
66 TCT-GTTTTCAATTTATACTTTTC
* *
83826795 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAAGGTCACATGCCGAGGTATTTTCAAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGCTGAGGTATTTTCAAAT
*
83826860 TCTGTTTT-AATTTCTACTTTTC
66 TCTGTTTTCAATTTATACTTTTC
* * * * *
83826882 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGTGTTGAGCTACTTTC-
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCACATGCTGAGGTATTTTCA
* * * * *
83826945 AATTTTCGTTTTTAATGTCT-GTTTT-
63 AATTCT-GTTTTCAATTTATACTTTTC
* * *
83826970 -TAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-G-AACACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGCTGAGGTATTTTCAA--
* * *
83827032 TATAT-TTTTTTCAATCTATATTTTTC
64 -AT-TCTGTTTTCAATTTATACTTTTC
* * * * * * * *
83827058 AAAAATCAACTTATATTACGAGAGATGAGTTGAGCCTCGGGGCAC--GCTGAGGTAATTCCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGCTGAGGTATTTTCAAAT
* *
83827121 TCTGCTTTTCAATTTTTGCTTTTC
66 TCTG-TTTTCAATTTATACTTTTC
* *
83827145 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACATGCCGAGGTATTTTCAAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGCTGAGGTATTTTCAAAT
83827210 TCTGTCTTTCAA
66 TCTGT-TTTCAA
83827222 ACTCTGTTTT
Statistics
Matches: 344, Mismatches: 60, Indels: 44
0.77 0.13 0.10
Matches are distributed among these distances:
83 13 0.04
84 1 0.00
85 37 0.11
86 11 0.03
87 107 0.31
88 13 0.04
89 153 0.44
90 7 0.02
91 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.36
Consensus pattern (88 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGCTGAGGTATTTTCAAAT
TCTGTTTTCAATTTATACTTTTC
Found at i:83827001 original size:174 final size:172
Alignment explanation
Indices: 83826708--83827459 Score: 610
Period size: 174 Copynumber: 4.2 Consensus size: 172
83826698 ATATTTTTAA
* * * * * * *
83826708 AAAAATCAATTCATATTACGAGAAGTGAGTTGAGCCTCAGG-ACAC-GTTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACTGCTGAGGTAATTTCAATT
* ** ** * * *
83826771 TCTATTTTTCAGGTAATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAAGG
65 TCTGTTTTT-AATTTTTGTTTTT---AAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGG
83826836 TCACATGCCGAGGTATTTTCAAAT-TCTGTTTTAATTTCTACTTTTC
126 TCACATGCCGAGGTATTTTCAAATATCTGTTTTAATTTCTACTTTTC
* * *
83826882 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGTTGAGCTACTTTCAA
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCAC-TGCTGAGGTAATTTCAA
* * *
83826947 TTT-TCGTTTTTAATGTCTGTTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-G-
63 TTTCT-GTTTTTAATTTTTGTTTTTAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGT
* * * * * * *
83827009 AACACGCTGAGGTATTTTCAATTTATAT-TTTTTTCAATCTATATTTTTC
127 CACATGCCGAGGTATTTTCAA---ATATCTGTTTT-AATTTCTACTTTTC
* * * * ** *
83827058 AAAAATCAACTTATATTACGAGAGATGAGTTGAGCCTCGGGGCAC-GCTGAGGTAATTCCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACTGCTGAGGTAATTTCAATTT
* *
83827122 CTGCTTTTCAATTTTTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGT
66 CTG-TTTTTAATTTTTG-TTTT--TAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGT
*
83827187 CACATGCCGAGGTATTTTCAAATTCTGTCTTTCAAACTCTGTTTTTAATTTTTACTTTTC
127 CACATGCCGAGGTATTTTCAAA---------T---A-TCTG-TTTTAATTTCTACTTTTC
* * * * *
83827247 AAAAACTCAACTCATATTGCGAGAAGTGAGTTGATCCTTGGCTCGCATGCCGAGGTATTTTCAAT
1 AAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCAC-TGCTGAGGTAATTTCAAT
* **
83827312 TTCTGTTTTTAATTTTTGTTTTTCAAAAATCAACTCATATTACGAGAAATGAGTTAAGCCTC-GG
64 TTCTGTTTTTAATTTTTGTTTTT---AAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGG
* * * * *
83827376 CTCACATGCTGAGGTA-TTTCCAATTTCTATTTTAA-TTC-ATGTTTTC
126 -TCACATGCCGAGGTATTTTCAAATATCTGTTTTAATTTCTA-CTTTTC
*
83827422 AAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
83827460 TTAATTTCTG
Statistics
Matches: 467, Mismatches: 70, Indels: 80
0.76 0.11 0.13
Matches are distributed among these distances:
172 34 0.07
173 12 0.03
174 110 0.24
175 22 0.05
176 91 0.19
177 12 0.03
178 40 0.09
181 1 0.00
184 1 0.00
187 1 0.00
188 1 0.00
189 17 0.04
190 47 0.10
191 59 0.13
192 19 0.04
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (172 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACTGCTGAGGTAATTTCAATTT
CTGTTTTTAATTTTTGTTTTTAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACA
TGCCGAGGTATTTTCAAATATCTGTTTTAATTTCTACTTTTC
Found at i:83827044 original size:16 final size:16
Alignment explanation
Indices: 83827023--83827056 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
83827013 CGCTGAGGTA
*
83827023 TTTTCAATTTATATTT
1 TTTTCAATCTATATTT
83827039 TTTTCAATCTATATTT
1 TTTTCAATCTATATTT
83827055 TT
1 TT
83827057 CAAAAATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTTCAATCTATATTT
Found at i:83827135 original size:14 final size:14
Alignment explanation
Indices: 83827116--83827146 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
83827106 GAGGTAATTC
83827116 CAATTTCTGCTTTT
1 CAATTTCTGCTTTT
*
83827130 CAATTTTTGCTTTT
1 CAATTTCTGCTTTT
83827144 CAA
1 CAA
83827147 AAATCAACTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.06, T:0.55
Consensus pattern (14 bp):
CAATTTCTGCTTTT
Found at i:83827174 original size:261 final size:262
Alignment explanation
Indices: 83826708--83827459 Score: 743
Period size: 261 Copynumber: 2.8 Consensus size: 262
83826698 ATATTTTTAA
* * * *
83826708 AAAAATCAATTCATATTACGAGAAGTGAGTTGAGCCTCAGGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGAACACGCTGAGGTATTTTCAATTT-
* * * * **
83826773 TA-TTTTTCAGGTAATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAAGGT
65 TATTTTTTCA-ATTATATTTTTCAAAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCGGGT
* * * * *
83826837 CACATGCCGAGGTATTTTCAAATTCTGTTTTAATTTCTACTTTTCAAAAAAATCAACTCATATTG
129 CACA-GCTGAGGTATTTCCAATTTCTGTTTTAATTTATGCTTTTC--AAAAATCAACTCATATTG
* **
83826902 CGAGAGGTGAGTTGAGCCTTGGCTCACGTGTTGAGCTACTTTC-AA-TTT-TC-GTTTTTAATGT
191 CGAGAGGTGAGTTGAGCCTTGG-TCACATGCCGAGCTACTTTCAAATTTTATCTGTTTTTAATGT
*
83826963 CT-GTTTT
255 CTACTTTT
* *
83826970 -TAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTATTTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGAACACGCTGAGGTATTTTCAATTT-
*
83827034 TATTTTTTTCAATCTATATTTTTCAAAAATCAACTTATATTACGAGAGATGAGTTGAGCCTCGGG
65 TA-TTTTTTCAAT-TATATTTTTCAAAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCGGG
* * *
83827099 GCAC-GCTGAGGTAATTCCAATTTCTGCTTTTCAATTTTTGCTTTTCAAAAATCAACTCATATTG
128 TCACAGCTGAGGTATTTCCAATTTCTG-TTTT-AATTTATGCTTTTCAAAAATCAACTCATATTG
* * * *
83827163 CGAGAGGTGAGTTAAGCCTCAGGTCACATGCCGAGGTATTTTCAAATTCTGTCTTTCAAACTCTG
191 CGAGAGGTGAGTTGAGCCT-TGGTCACATGCCGAGCTACTTTCAAA-----T-TTT---A-TCTG
* *
83827228 TTTTTAATTTTTACTTTT
245 TTTTTAATGTCTACTTTT
* ** ** * *
83827246 CAAAAACTCAACTCATATTGCGAGAAGTGAGTTGATCCTTGGCTCGCATGCCGAGGTATTTTCAA
1 -AAAAA-TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAG--AACACGCTGAGGTATTTTCAA
* * * * *
83827311 TTTCT-GTTTTT-AATTTTTGTTTTTCAAAAATCAACTCATATTACGAGAAATGAGTTAAGCCTC
62 TTT-TATTTTTTCAA-TTATATTTTTCAAAAATCAACTCATATTACGAGAGATGAGTTGAGCCTC
* * * *
83827374 GGCTCACATGCTGAGGTATTTCCAATTTCTATTTTAATTCATG-TTTTCAAAAATCAACTCATAA
125 GGGTCACA-GCTGAGGTATTTCCAATTTCTGTTTTAATTTATGCTTTTCAAAAATCAACTCATAT
83827438 TGCGAGAGGTGAGTTGAGCCTT
189 TGCGAGAGGTGAGTTGAGCCTT
83827460 TTAATTTCTG
Statistics
Matches: 405, Mismatches: 56, Indels: 44
0.80 0.11 0.09
Matches are distributed among these distances:
261 128 0.32
262 9 0.02
263 67 0.17
269 3 0.01
274 2 0.00
275 11 0.03
276 4 0.01
277 40 0.10
278 59 0.15
279 41 0.10
280 20 0.05
281 21 0.05
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (262 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGAACACGCTGAGGTATTTTCAATTTT
ATTTTTTCAATTATATTTTTCAAAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCGGGTCA
CAGCTGAGGTATTTCCAATTTCTGTTTTAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGA
GGTGAGTTGAGCCTTGGTCACATGCCGAGCTACTTTCAAATTTTATCTGTTTTTAATGTCTACTT
TT
Found at i:83827309 original size:103 final size:103
Alignment explanation
Indices: 83827121--83827317 Score: 290
Period size: 103 Copynumber: 1.9 Consensus size: 103
83827111 AATTCCAATT
* *
83827121 TCTGCTTTTCAATTTTTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGG
1 TCTGCTTTTCAATTTTTACTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTCAGG
83827186 TCACATGCCGAGGTATTTTCAAATTCTGTCTTTCAAAC
66 TCACATGCCGAGGTATTTTCAAATTCTGTCTTTCAAAC
* * * *
83827224 TCTG-TTTTTAATTTTTACTTTTCAAAAACTCAACTCATATTGCGAGAAGTGAGTTGATCCT-TG
1 TCTGCTTTTCAATTTTTACTTTTCAAAAA-TCAACTCATATTGCGAGAAGTGAGTTAAGCCTCAG
* *
83827287 GCTCGCATGCCGAGGTATTTTCAATTTCTGT
65 G-TCACATGCCGAGGTATTTTCAAATTCTGT
83827318 TTTTAATTTT
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
102 24 0.29
103 60 0.71
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (103 bp):
TCTGCTTTTCAATTTTTACTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTCAGG
TCACATGCCGAGGTATTTTCAAATTCTGTCTTTCAAAC
Found at i:83827458 original size:86 final size:88
Alignment explanation
Indices: 83827242--83827458 Score: 294
Period size: 88 Copynumber: 2.5 Consensus size: 88
83827232 TAATTTTTAC
* * *
83827242 TTTTCAAAAACTCAACTCATATTGCGAGAAGTGAGTTGATCCTTGGCTCGCATGCCGAGGTATTT
1 TTTTCAAAAA-TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGCCGAGGTATTT
* * **
83827307 TCAATTTCTGTTTTTAATTTTTGT
65 CCAATTTCTGATTTTAATTCATGT
* * * *
83827331 TTTTCAAAAATCAACTCATATTACGAGAAATGAGTTAAGCCTCGGCTCACATGCTGAGGTATTTC
1 TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGCCGAGGTATTTC
83827396 CAATTTCT-ATTTTAATTCATG-
66 CAATTTCTGATTTTAATTCATGT
* *
83827417 TTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCT
1 TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
83827459 TTTAATTTCT
Statistics
Matches: 112, Mismatches: 16, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
86 37 0.33
87 10 0.09
88 55 0.49
89 10 0.09
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.37
Consensus pattern (88 bp):
TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGCCGAGGTATTTC
CAATTTCTGATTTTAATTCATGT
Found at i:83828775 original size:22 final size:23
Alignment explanation
Indices: 83828736--83828778 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
83828726 AATCCTTCCC
83828736 CTCTCCCTCCTCTCTCTTTTTCT
1 CTCTCCCTCCTCTCTCTTTTTCT
* *
83828759 CTCTTCCT-CTCTTTCTTTTT
1 CTCTCCCTCCTCTCTCTTTTT
83828779 TTTCTTCTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (23 bp):
CTCTCCCTCCTCTCTCTTTTTCT
Found at i:83828793 original size:21 final size:22
Alignment explanation
Indices: 83828736--83828793 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 22
83828726 AATCCTTCCC
* *
83828736 CTCTCCCTCCTCTCTCTTTTTCT
1 CTCTTCCTCC-CTTTCTTTTTCT
*
83828759 CTCTTCCTCTCTTTCTTTTT-T
1 CTCTTCCTCCCTTTCTTTTTCT
* *
83828780 TTCTTCTTCCCTTT
1 CTCTTCCTCCCTTT
83828794 ACAAATGATT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
21 12 0.41
22 9 0.31
23 8 0.28
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (22 bp):
CTCTTCCTCCCTTTCTTTTTCT
Found at i:83829285 original size:21 final size:22
Alignment explanation
Indices: 83829241--83829309 Score: 68
Period size: 21 Copynumber: 3.0 Consensus size: 22
83829231 CTTTATTTTC
**
83829241 TTTTTATATATTATTACTGTTA
1 TTTTTATATATTATTACTAATA
83829263 TTTTTATAT-TTATTACTAATA
1 TTTTTATATATTATTACTAATA
* *
83829284 TTATTATTATAGTTACTACTATATA
1 TTTTTA-TATA-TTATTACTA-ATA
83829309 T
1 T
83829310 ATGTTACGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
21 15 0.38
22 12 0.31
24 8 0.21
25 4 0.10
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (22 bp):
TTTTTATATATTATTACTAATA
Found at i:83829287 original size:24 final size:25
Alignment explanation
Indices: 83829260--83829309 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
83829250 ATTATTACTG
* * *
83829260 TTATTTTTATATTTATTACTA-ATA
1 TTATTATTATAGTTACTACTATATA
83829284 TTATTATTATAGTTACTACTATATA
1 TTATTATTATAGTTACTACTATATA
83829309 T
1 T
83829310 ATGTTACGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.58
Consensus pattern (25 bp):
TTATTATTATAGTTACTACTATATA
Found at i:83830466 original size:20 final size:22
Alignment explanation
Indices: 83830424--83830469 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
83830414 AAGTAGTATA
* *
83830424 TATATATTTCGACTATTTCATG
1 TATATATTTCAAATATTTCATG
83830446 TATATATTTCAAATA-TT-ATG
1 TATATATTTCAAATATTTCATG
83830466 TATA
1 TATA
83830470 GTATATTTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.32
21 2 0.09
22 13 0.59
ACGTcount: A:0.35, C:0.09, G:0.07, T:0.50
Consensus pattern (22 bp):
TATATATTTCAAATATTTCATG
Found at i:83836211 original size:38 final size:39
Alignment explanation
Indices: 83836154--83836238 Score: 120
Period size: 38 Copynumber: 2.2 Consensus size: 39
83836144 GACTTAATGT
* *
83836154 CTAGCAAGCCTTGTGCCGGTGATAAATTCAGCTT-TATAC
1 CTAGCAGGCCTTGTGCCGGTGATAAATTCAGGTTAT-TAC
*
83836193 CTAGCAGGCC-TGTGCCGGTGATAAGTTCAGGTTATTAC
1 CTAGCAGGCCTTGTGCCGGTGATAAATTCAGGTTATTAC
83836231 CTAGCAGG
1 CTAGCAGG
83836239 TTAATTGTCG
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
38 32 0.76
39 10 0.24
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (39 bp):
CTAGCAGGCCTTGTGCCGGTGATAAATTCAGGTTATTAC
Found at i:83839391 original size:28 final size:27
Alignment explanation
Indices: 83839341--83839454 Score: 79
Period size: 28 Copynumber: 3.9 Consensus size: 27
83839331 CTATTCAGAA
*
83839341 ATCAGTGTTAA-CTGGGCCTTAGCCCAT
1 ATCAGTATTAATCTGGGCC-TAGCCCAT
83839368 ATCAGTATTAATCTGGGCCATAGCCC-T
1 ATCAGTATTAATCTGGGCC-TAGCCCAT
* *
83839395 ATTACAATATCAGAGCATACTGGGCCTAGCCCAT
1 A-T-CAGTAT--TA--AT-CTGGGCCTAGCCCAT
* *
83839429 ATCAGTATCAGTCTGGGCCGTAGCCC
1 ATCAGTATTAATCTGGGCC-TAGCCC
83839455 TATTACAAGT
Statistics
Matches: 70, Mismatches: 7, Indels: 19
0.73 0.07 0.20
Matches are distributed among these distances:
27 19 0.27
28 21 0.30
29 5 0.07
30 1 0.01
31 1 0.01
32 5 0.07
33 9 0.13
34 9 0.13
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (27 bp):
ATCAGTATTAATCTGGGCCTAGCCCAT
Found at i:83839396 original size:62 final size:60
Alignment explanation
Indices: 83839318--83839462 Score: 177
Period size: 61 Copynumber: 2.4 Consensus size: 60
83839308 TCAAGCTTTA
* * *
83839318 CTGGGCCTAAGCCCTATT-CAGAAATCAGTG-TTAACTGGGCCTTAGCCCATATCAGTATTAAT
1 CTGGGCCT-AGCCCTATTACA-AAATCAGAGCAT-ACTGGGCC-TAGCCCATATCAGTATCAAT
* *
83839380 CTGGGCCATAGCCCTATTACAATATCAGAGCATACTGGGCCTAGCCCATATCAGTATCAGT
1 CTGGGCC-TAGCCCTATTACAAAATCAGAGCATACTGGGCCTAGCCCATATCAGTATCAAT
83839441 CTGGGCCGTAGCCCTATTACAA
1 CTGGGCC-TAGCCCTATTACAA
83839463 GTCGAGATAT
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
61 39 0.53
62 31 0.42
63 4 0.05
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (60 bp):
CTGGGCCTAGCCCTATTACAAAATCAGAGCATACTGGGCCTAGCCCATATCAGTATCAAT
Found at i:83839508 original size:20 final size:20
Alignment explanation
Indices: 83839483--83839521 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
83839473 ATTGGGTCTT
83839483 GCCCATATTAACACAGTTGG
1 GCCCATATTAACACAGTTGG
* *
83839503 GCCCATTTTAATACAGTTG
1 GCCCATATTAACACAGTTG
83839522 ACCCATAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (20 bp):
GCCCATATTAACACAGTTGG
Found at i:83843725 original size:26 final size:26
Alignment explanation
Indices: 83843696--83843777 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
83843686 TGATACAAAT
*
83843696 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
83843722 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
83843748 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
83843774 TGAT
1 TGAT
83843778 TGGAATTTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:83850922 original size:20 final size:20
Alignment explanation
Indices: 83850897--83850935 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
83850887 TATTCTCTGG
*
83850897 AAAGTTTTAATTATGTAATC
1 AAAGTTTCAATTATGTAATC
83850917 AAAGTTTCAATTATGTAAT
1 AAAGTTTCAATTATGTAAT
83850936 GATGTAAGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.05, G:0.10, T:0.44
Consensus pattern (20 bp):
AAAGTTTCAATTATGTAATC
Found at i:83853266 original size:48 final size:48
Alignment explanation
Indices: 83853214--83853310 Score: 176
Period size: 48 Copynumber: 2.0 Consensus size: 48
83853204 AATTTTAAGA
83853214 TATTCTTATTTCAAAGTGTGAATTTTAACAGTGATTTTAGTTATTCAT
1 TATTCTTATTTCAAAGTGTGAATTTTAACAGTGATTTTAGTTATTCAT
**
83853262 TATTCTTATTTCAAAGTGTGAATTTTAATTGTGATTTTAGTTATTCAT
1 TATTCTTATTTCAAAGTGTGAATTTTAACAGTGATTTTAGTTATTCAT
83853310 T
1 T
83853311 TTGGCATGGC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.28, C:0.07, G:0.12, T:0.53
Consensus pattern (48 bp):
TATTCTTATTTCAAAGTGTGAATTTTAACAGTGATTTTAGTTATTCAT
Found at i:83857710 original size:24 final size:24
Alignment explanation
Indices: 83857682--83857733 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
83857672 TTAGCAAGTC
* *
83857682 AAATAAACTATGCTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
83857706 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
83857730 AAAT
1 AAAT
83857734 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:83859677 original size:24 final size:24
Alignment explanation
Indices: 83859649--83859700 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
83859639 TTAGCAAGTC
* *
83859649 AAATAAACTATGCTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
83859673 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
83859697 AAAT
1 AAAT
83859701 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:83862007 original size:26 final size:26
Alignment explanation
Indices: 83861957--83862012 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
83861947 ATAGAAAGTG
* *
83861957 ACTTTACTCGTTCCGTAATTGACCAA
1 ACTTTACTCGTTCCGTAAGTAACCAA
* * *
83861983 ACTTTACTTGTTCTGTAAGTAACCAT
1 ACTTTACTCGTTCCGTAAGTAACCAA
83862009 ACTT
1 ACTT
83862013 AATTCACAAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.39
Consensus pattern (26 bp):
ACTTTACTCGTTCCGTAAGTAACCAA
Found at i:83863176 original size:5 final size:5
Alignment explanation
Indices: 83863161--83863193 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
83863151 TCAAATTTGA
83863161 GTTTT -TTTT GTTTT GTTTT GTTTT GTTTT GTTT
1 GTTTT GTTTT GTTTT GTTTT GTTTT GTTTT GTTT
83863194 CTTTATATTC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82
Consensus pattern (5 bp):
GTTTT
Found at i:83864298 original size:192 final size:192
Alignment explanation
Indices: 83863971--83864361 Score: 746
Period size: 192 Copynumber: 2.0 Consensus size: 192
83863961 TAATTTATGT
*
83863971 TTTTTAGACAAATGGGCTAATTGCTCATTAGCTCCCAAAACTCTCCAAAATCCTTTCCAAATTCT
1 TTTTTAGACAAATGGGCTAATTGCCCATTAGCTCCCAAAACTCTCCAAAATCCTTTCCAAATTCT
83864036 ACTAAAATTCCCTATATGTTATTTTATCAAATTAAAACCCTAACTCTCTTCCTATTTATACCTTA
66 ACTAAAATTCCCTATATGTTATTTTATCAAATTAAAACCCTAACTCTCTTCCTATTTATACCTTA
83864101 GATTTCTCTCAAAATTCTCTATTTCAAAACTCTTTTAAACCCTTAAGTTTTGCTAAAAGATA
131 GATTTCTCTCAAAATTCTCTATTTCAAAACTCTTTTAAACCCTTAAGTTTTGCTAAAAGATA
*
83864163 TTTTTAGACAAATGGGCTAATTGCCCATTAGCTCCTAAAACTCTCCAAAATCCTTTCCAAATTCT
1 TTTTTAGACAAATGGGCTAATTGCCCATTAGCTCCCAAAACTCTCCAAAATCCTTTCCAAATTCT
*
83864228 ACTAAAATTCCCTATTTGTTATTTTATCAAATTAAAACCCTAACTCTCTTCCTATTTATACCTTA
66 ACTAAAATTCCCTATATGTTATTTTATCAAATTAAAACCCTAACTCTCTTCCTATTTATACCTTA
83864293 GATTTCTCTCAAAATTCTCTATTTCAAAACTCTTTTAAACCCTTAAGTTTTGCTAAAAGATA
131 GATTTCTCTCAAAATTCTCTATTTCAAAACTCTTTTAAACCCTTAAGTTTTGCTAAAAGATA
83864355 TTCTTTA
1 TT-TTTA
83864362 AAGTCTTTGA
Statistics
Matches: 195, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
192 191 0.98
193 4 0.02
ACGTcount: A:0.32, C:0.23, G:0.06, T:0.39
Consensus pattern (192 bp):
TTTTTAGACAAATGGGCTAATTGCCCATTAGCTCCCAAAACTCTCCAAAATCCTTTCCAAATTCT
ACTAAAATTCCCTATATGTTATTTTATCAAATTAAAACCCTAACTCTCTTCCTATTTATACCTTA
GATTTCTCTCAAAATTCTCTATTTCAAAACTCTTTTAAACCCTTAAGTTTTGCTAAAAGATA
Found at i:83868283 original size:26 final size:26
Alignment explanation
Indices: 83868247--83868328 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
83868237 TGAAATTCCA
*
83868247 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
83868273 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
83868299 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
83868325 ATCA
1 ATCA
83868329 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.38, C:0.26, G:0.06, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Done.