Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 26 of 290
Found at i:8467171 original size:160 final size:163
Alignment explanation
Indices: 8466905--8467487 Score: 624
Period size: 160 Copynumber: 3.5 Consensus size: 163
8466895 GTATTCTGAT
* * *
8466905 GTTTTTCAATTTATGTTTCAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-AG
1 GTTTTTCAATTTATGTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCAC
*
8466969 ACGTTGAGGTATTTTCAATTTCTGACTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
65 ACGTTGAGGTATTTTCAATTTTTG--TTCTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
8467033 AGCCTCAGG-ACACGCTGAGGTAATTTT-AATTTTC
128 AGCCTCAGGCACACGCTGAGGTAATTTTCAATTTTC
* *
8467067 GTTTTTCAATTTATTTTTC-AAAAATCAACTCATATTGCGAGAGGTGGGTTGAGCCTCAGG-ACA
1 GTTTTTCAATTTATGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACA
8467130 CGTTGAGGTATTTTCAATTTTTGTTCGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
66 CGTTGAGGTATTTTCAATTTTTGTTC-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* * * * *
8467195 TCTCGGGCCACATGCCGAGGTCTCTTCAAATTCTGATTTCAATTTTT
130 CCTCAGG-CACACGCTGAGG-----T--AA---T--TTTCAATTTTC
* * * *
8467242 GCTTTTCAATTTATGTGTTTCAAAAAAATCAACTCCTATTGCGAGAGGTGAATTGAGCCTCGGGT
1 GTTTTTCAATTTA--TGTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-
* ** * ** *
8467307 CACATGCCGAGGTATTTCCAATTTCAGTTTTCCAAAAAAAAAATCAACTCATATTGCGAGAGGTG
62 CACACGTTGAGGTATTTTCAATTTTTGTTCT-C---AAAAAAATCAACTCATATTGCGAGAGGTG
8467372 AGTTGAGCCTCAGGTCACACGCTGAGGT-ATTTTCAA-TTTC
123 AGTTGAGCCTCAGG-CACACGCTGAGGTAATTTTCAATTTTC
* * *
8467412 TGTTTTTCAATTTATGTTCCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCTTCAGGTCA
1 -GTTTTTCAATTTATGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CA
*
8467477 TACGTTGAGGT
64 CACGTTGAGGT
8467488 GAGTTGAGCC
Statistics
Matches: 352, Mismatches: 41, Indels: 50
0.79 0.09 0.11
Matches are distributed among these distances:
158 2 0.01
160 105 0.30
162 27 0.08
167 1 0.00
168 47 0.13
169 7 0.02
170 3 0.01
171 18 0.05
172 1 0.00
173 1 0.00
174 3 0.01
175 18 0.05
176 1 0.00
177 5 0.01
179 38 0.11
180 1 0.00
181 23 0.07
184 51 0.14
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.34
Consensus pattern (163 bp):
GTTTTTCAATTTATGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACA
CGTTGAGGTATTTTCAATTTTTGTTCTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
CTCAGGCACACGCTGAGGTAATTTTCAATTTTC
Found at i:8467356 original size:80 final size:80
Alignment explanation
Indices: 8467263--8467476 Score: 248
Period size: 80 Copynumber: 2.6 Consensus size: 80
8467253 TATGTGTTTC
* * *
8467263 AAAAAAATCAACTCCTATTGCGAGAGGTGAATTGAGCCTCGGGTCACATGCCGAGGTATTTCCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAGGTCACACGCCGAGGTATTTCCAA
8467328 TTTCAGTTTTCCAAA
66 TTTCAGTTTTCCAAA
* * *
8467343 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAGGTCACACGCCGAGGTATTTCCAA
* *
8467408 TTTCTGTTTTTCAATTTA
66 TTTCAGTTTTCCAA---A
* * * *
8467426 TGTTCCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCTTCAGGTCA
1 -----AAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAGGTCA
8467477 TACGTTGAGG
Statistics
Matches: 115, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
80 71 0.62
83 1 0.01
88 43 0.37
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (80 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAGGTCACACGCCGAGGTATTTCCAA
TTTCAGTTTTCCAAA
Found at i:8467377 original size:184 final size:176
Alignment explanation
Indices: 8467055--8467424 Score: 429
Period size: 184 Copynumber: 2.1 Consensus size: 176
8467045 CGCTGAGGTA
* * **
8467055 ATTTTAATTTTCGTTTTTCAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGGGTTGAG
1 ATTTCAATTTTCGCTTTTCAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAATTGAG
** * ***
8467120 CCTCAGGACACGTTGAGGTATTTTCAATTTTTGTTCGTCAAAAAAATCAACTCATATTGCGAGAG
66 CCTCAGGACACGCCGAGGTATTTCCAATTTTTGTTCAAAAAAAAAATCAACTCATATTGCGAGAG
* * * *
8467185 GTGAGTTGAGTCTCGGGCCACATGCCGAGGTCTCTTCAAATTCTG-
131 GTGAGTTGAGCCTCAGGCCACACGCCGAGGTATCTTCAAATTCTGT
* *
8467230 ATTTCAATTTTTGCTTTTCAATTTATGTGTTTCAAAAAAATCAACTCCTATTGCGAGAGGTGAAT
1 ATTTCAATTTTCGCTTTTCAATTTAT-T-TTTC--AAAAATCAACTCATATTGCGAGAGGTGAAT
* *
8467295 TGAGCCTCGGGTCACATGCCGAGGTATTTCCAATTTCAGTT-TTCCAAAAAAAAAATCAACTCAT
62 TGAGCCTCAGG--ACACGCCGAGGTATTTCCAATTT---TTGTT-CAAAAAAAAAATCAACTCAT
* * * *
8467359 ATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAATTTCTGT
121 ATTGCGAGAGGTGAGTTGAGCCTCAGGCCACACGCCGAGGTATCTTCAAATTCTGT
*
8467415 TTTTCAATTT
1 ATTTCAATTT
8467425 ATGTTCCAAA
Statistics
Matches: 161, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
175 23 0.14
176 1 0.01
177 4 0.02
179 37 0.23
181 19 0.12
183 2 0.01
184 66 0.41
185 9 0.06
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (176 bp):
ATTTCAATTTTCGCTTTTCAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAATTGAG
CCTCAGGACACGCCGAGGTATTTCCAATTTTTGTTCAAAAAAAAAATCAACTCATATTGCGAGAG
GTGAGTTGAGCCTCAGGCCACACGCCGAGGTATCTTCAAATTCTGT
Found at i:8468956 original size:3 final size:3
Alignment explanation
Indices: 8468924--8469039 Score: 85
Period size: 3 Copynumber: 38.7 Consensus size: 3
8468914 AATCTAATAC
* *
8468924 TAT TAT TTT TAT TTT TAT T-T T-T TA- TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * ** * *
8468969 TAT TAT TAT TCT TAAT GTAT TAT TAT TACT AAT TAT TTT TAT TGC AAG
1 TAT TAT TAT TAT T-AT -TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
* *
8469017 TAT TGT TAT TAT TAT TAA TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TA
8469040 GTGTATGTTT
Statistics
Matches: 87, Mismatches: 21, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
2 6 0.07
3 75 0.86
4 5 0.06
5 1 0.01
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:8469185 original size:130 final size:130
Alignment explanation
Indices: 8469024--8469327 Score: 362
Period size: 130 Copynumber: 2.3 Consensus size: 130
8469014 AAGTATTGTT
** * * * * *
8469024 ATTATTATTAATATTAGTGTATGTTTTATTATACATGTATGTATATATATTTTTATATATAGTA-
1 ATTATTATTAATATTAGTGTATCATTTATTATACACGTATATATATATATGTATATATATAGCAG
**
8469088 T-TATTTAATTACTTTATTTTAATATTATTATATTATATTTGCTTTTTGCATTTCAACATTATTA
66 TGTATTTAATTAAGTTATTTTAATATT-TT-TATTATATTTGCTTTTTGCATTTCAACATTATTA
8469152 TC
129 TC
* *
8469154 ATTATTATTATATATTAGTGTA-CATTTATTATATACGTATATGTATATATGTATATATATAGCA
1 ATTATTATTA-ATATTAGTGTATCATTTATTATACACGTATATATATATATGTATATATATAGCA
* * * *
8469218 GTGTTTTTTATTAAGTTATTTTAATATTTTTATTATATTTGCTTTTTGTATTTCAATATTATTAT
65 GTGTATTTAATTAAGTTATTTTAATATTTTTATTATATTTGCTTTTTGCATTTCAACATTATTAT
*
8469283 T
130 C
* * ** * *
8469284 ATTATTATTAGTATTAGTATATGTTTTATTATATATGTATATAT
1 ATTATTATTAATATTAGTGTATCATTTATTATACACGTATATAT
8469328 CTTTAATATA
Statistics
Matches: 148, Mismatches: 22, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
129 9 0.06
130 104 0.70
131 14 0.09
132 21 0.14
ACGTcount: A:0.32, C:0.04, G:0.08, T:0.57
Consensus pattern (130 bp):
ATTATTATTAATATTAGTGTATCATTTATTATACACGTATATATATATATGTATATATATAGCAG
TGTATTTAATTAAGTTATTTTAATATTTTTATTATATTTGCTTTTTGCATTTCAACATTATTATC
Found at i:8469312 original size:21 final size:21
Alignment explanation
Indices: 8469288--8469352 Score: 71
Period size: 21 Copynumber: 3.0 Consensus size: 21
8469278 ATTATTATTA
8469288 TTATTAGTATTA-GTATATGTT
1 TTATTA-TATTATGTATATGTT
*
8469309 TTATTATA-TATGTATATATCT
1 TTATTATATTATGTATATGT-T
*
8469330 TTAATATATATATGTATATGTT
1 TTATTATAT-TATGTATATGTT
8469352 T
1 T
8469353 ATGTAGTATT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
19 2 0.05
20 9 0.24
21 14 0.38
22 2 0.05
23 10 0.27
ACGTcount: A:0.32, C:0.02, G:0.09, T:0.57
Consensus pattern (21 bp):
TTATTATATTATGTATATGTT
Found at i:8469353 original size:21 final size:20
Alignment explanation
Indices: 8469300--8469353 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 20
8469290 ATTAGTATTA
*
8469300 GTATATGTTTTATTATATAT
1 GTATATGTTTAATTATATAT
*
8469320 GTATATATCTTTAATATATATAT
1 G--TATATGTTTAAT-TATATAT
8469343 GTATATGTTTA
1 GTATATGTTTA
8469354 TGTAGTATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 1 0.04
21 9 0.32
22 10 0.36
23 8 0.29
ACGTcount: A:0.33, C:0.02, G:0.09, T:0.56
Consensus pattern (20 bp):
GTATATGTTTAATTATATAT
Found at i:8469757 original size:14 final size:14
Alignment explanation
Indices: 8469738--8469771 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
8469728 CATTATTAAC
8469738 ATATATATATATGT
1 ATATATATATATGT
*
8469752 ATATATATTTATGT
1 ATATATATATATGT
*
8469766 ACATAT
1 ATATAT
8469772 TGTTATTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.41, C:0.03, G:0.06, T:0.50
Consensus pattern (14 bp):
ATATATATATATGT
Found at i:8472333 original size:30 final size:30
Alignment explanation
Indices: 8472299--8472359 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
8472289 CTTATTTTAC
*
8472299 TGTTAATTTTGTTATTATTTTAAAGGCATT
1 TGTTAATTTTGTTATTATTTCAAAGGCATT
*
8472329 TGTTAATTTTGTTATTATTTCAGAGGCATT
1 TGTTAATTTTGTTATTATTTCAAAGGCATT
8472359 T
1 T
8472360 ACTTGTTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.25, C:0.05, G:0.15, T:0.56
Consensus pattern (30 bp):
TGTTAATTTTGTTATTATTTCAAAGGCATT
Found at i:8472491 original size:11 final size:11
Alignment explanation
Indices: 8472477--8472511 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
8472467 ATATTATATA
8472477 TATATAAAAAT
1 TATATAAAAAT
8472488 TATATAAAAAT
1 TATATAAAAAT
*
8472499 AATATAAAAAT
1 TATATAAAAAT
8472510 TA
1 TA
8472512 ATACGGGTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
TATATAAAAAT
Found at i:8477202 original size:2 final size:2
Alignment explanation
Indices: 8477195--8477237 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
8477185 ACATGCATAA
8477195 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
8477237 A
1 A
8477238 AAACCTGTTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8480902 original size:17 final size:17
Alignment explanation
Indices: 8480876--8480914 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
8480866 TTTTTCTTGG
8480876 ATTTTAAT-TTTT-TAA
1 ATTTTAATATTTTATAA
*
8480891 TTTTTAATATTTTATAA
1 ATTTTAATATTTTATAA
8480908 ATTTTAA
1 ATTTTAA
8480915 ATTATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 7 0.35
16 4 0.20
17 9 0.45
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
ATTTTAATATTTTATAA
Found at i:8483745 original size:17 final size:17
Alignment explanation
Indices: 8483722--8483777 Score: 94
Period size: 17 Copynumber: 3.3 Consensus size: 17
8483712 AACAGACTAA
8483722 CTAACTGCTAACTGTTG
1 CTAACTGCTAACTGTTG
* *
8483739 TTAACTGCTAACTATTG
1 CTAACTGCTAACTGTTG
8483756 CTAACTGCTAACTGTTG
1 CTAACTGCTAACTGTTG
8483773 CTAAC
1 CTAAC
8483778 AACCACAACC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 35 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (17 bp):
CTAACTGCTAACTGTTG
Found at i:8485618 original size:24 final size:24
Alignment explanation
Indices: 8485591--8485642 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
8485581 TTAGTAAGTC
*
8485591 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
8485615 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
8485639 AAAT
1 AAAT
8485643 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:8487588 original size:24 final size:24
Alignment explanation
Indices: 8487561--8487612 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
8487551 TTAGTAAGTC
*
8487561 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
8487585 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
8487609 AAAT
1 AAAT
8487613 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:8490671 original size:17 final size:17
Alignment explanation
Indices: 8490644--8490699 Score: 85
Period size: 17 Copynumber: 3.3 Consensus size: 17
8490634 AATAGACTAA
8490644 CTAACTGCTAACTGTTG
1 CTAACTGCTAACTGTTG
* *
8490661 TTAACTACTAACTGTTG
1 CTAACTGCTAACTGTTG
*
8490678 CTAACTGCTAATTGTTG
1 CTAACTGCTAACTGTTG
8490695 CTAAC
1 CTAAC
8490700 AACCATAACC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 34 1.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (17 bp):
CTAACTGCTAACTGTTG
Found at i:8503506 original size:30 final size:29
Alignment explanation
Indices: 8503470--8503537 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
8503460 CGGCCTTTTT
*
8503470 TATTAAAATAAC-CCCTTAATTTTAATTAAA
1 TATTAAAATAACTCACTT--TTTTAATTAAA
*
8503500 TATTAAAATGACTCACTTTTTTAATTAAA
1 TATTAAAATAACTCACTTTTTTAATTAAA
*
8503529 TACTAAAAT
1 TATTAAAAT
8503538 GACCTGAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 19 0.56
30 11 0.32
31 4 0.12
ACGTcount: A:0.46, C:0.12, G:0.01, T:0.41
Consensus pattern (29 bp):
TATTAAAATAACTCACTTTTTTAATTAAA
Found at i:8503799 original size:8 final size:8
Alignment explanation
Indices: 8503786--8503821 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
8503776 ATGTCAATTT
8503786 TTTTTTAC
1 TTTTTTAC
8503794 TTTTTTAC
1 TTTTTTAC
*
8503802 TTTTTGAC
1 TTTTTTAC
*
8503810 TTTTTAAC
1 TTTTTTAC
8503818 TTTT
1 TTTT
8503822 CTTTTGTCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.14, C:0.11, G:0.03, T:0.72
Consensus pattern (8 bp):
TTTTTTAC
Found at i:8503855 original size:18 final size:19
Alignment explanation
Indices: 8503832--8503870 Score: 71
Period size: 18 Copynumber: 2.1 Consensus size: 19
8503822 CTTTTGTCTT
8503832 TTTTATTTATTTATT-TTA
1 TTTTATTTATTTATTATTA
8503850 TTTTATTTATTTATTATTA
1 TTTTATTTATTTATTATTA
8503869 TT
1 TT
8503871 AACTTTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTTATTTATTTATTATTA
Found at i:8503869 original size:14 final size:14
Alignment explanation
Indices: 8503832--8503870 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
8503822 CTTTTGTCTT
8503832 TTTTA-TTTATTTA
1 TTTTATTTTATTTA
8503845 TTTTATTTTATTTA
1 TTTTATTTTATTTA
8503859 -TTTATTATTATT
1 TTTTATT-TTATT
8503871 AACTTTAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTTATTTTATTTA
Found at i:8503903 original size:22 final size:22
Alignment explanation
Indices: 8503878--8503951 Score: 80
Period size: 22 Copynumber: 3.2 Consensus size: 22
8503868 ATTAACTTTA
8503878 AAATTTTTGAAATATATA-TTTG
1 AAATTTTT-AAATATATATTTTG
*
8503900 AAATATTTTATTAATATATATTTTTT
1 AAAT-TTTTA--AATATATA-TTTTG
8503926 AAA-TTTTAAATATATATTTTG
1 AAATTTTTAAATATATATTTTG
8503947 AAATT
1 AAATT
8503952 ACTTTTTAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
21 7 0.16
22 14 0.32
23 4 0.09
24 13 0.30
26 6 0.14
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (22 bp):
AAATTTTTAAATATATATTTTG
Found at i:8503958 original size:26 final size:25
Alignment explanation
Indices: 8503880--8503961 Score: 75
Period size: 22 Copynumber: 3.4 Consensus size: 25
8503870 TAACTTTAAA
8503880 ATTTTTGAAATATATA-TTTGAAA-T
1 ATTTTT-AAATATATATTTTGAAATT
* **
8503904 ATTTTATTAATATATATTTTTTAA--
1 ATTTT-TAAATATATATTTTGAAATT
8503928 A-TTTTAAATATATATTTTGAAATT
1 ATTTTTAAATATATATTTTGAAATT
8503952 ACTTTTTAAA
1 A-TTTTTAAA
8503962 ATTTTAAATA
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
22 15 0.33
23 3 0.07
24 15 0.33
25 6 0.13
26 7 0.15
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.55
Consensus pattern (25 bp):
ATTTTTAAATATATATTTTGAAATT
Found at i:8503965 original size:21 final size:23
Alignment explanation
Indices: 8503939--8503995 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 23
8503929 TTTTAAATAT
*
8503939 ATATTTTGAA-ATTACTTTTTAA
1 ATATTTTAAATATTACTTTTTAA
*
8503961 A-ATTTTAAATATTATTTTTTAA
1 ATATTTTAAATATTACTTTTTAA
8503983 ATA-TTTAAATATT
1 ATATTTTAAATATT
8503996 TTAAATTTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
21 7 0.23
22 23 0.74
23 1 0.03
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (23 bp):
ATATTTTAAATATTACTTTTTAA
Found at i:8504009 original size:17 final size:17
Alignment explanation
Indices: 8503956--8504001 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
8503946 GAAATTACTT
8503956 TTTAAA-ATTTTAAATA
1 TTTAAATATTTTAAATA
*
8503972 -TT--ATTTTTTAAATA
1 TTTAAATATTTTAAATA
8503986 TTTAAATATTTTAAAT
1 TTTAAATATTTTAAAT
8504002 TTTCAAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 7
0.73 0.06 0.21
Matches are distributed among these distances:
13 1 0.04
14 9 0.38
15 4 0.17
17 10 0.42
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TTTAAATATTTTAAATA
Found at i:8504327 original size:20 final size:20
Alignment explanation
Indices: 8504302--8504339 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8504292 TTTCACTTTT
8504302 TTTTTACTTATTTATTATTA
1 TTTTTACTTATTTATTATTA
* *
8504322 TTTTTAGTTTTTTATTAT
1 TTTTTACTTATTTATTAT
8504340 CTTTTGTCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (20 bp):
TTTTTACTTATTTATTATTA
Found at i:8504508 original size:12 final size:13
Alignment explanation
Indices: 8504475--8504508 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
8504465 TATTTTTTAA
8504475 ATTTTAAA-TATT
1 ATTTTAAATTATT
8504487 ATTTTAAATTATT
1 ATTTTAAATTATT
8504500 -TTTTAAATT
1 ATTTTAAATT
8504509 TTGAATATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 17 0.81
13 4 0.19
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
ATTTTAAATTATT
Found at i:8504538 original size:23 final size:23
Alignment explanation
Indices: 8504494--8504563 Score: 67
Period size: 23 Copynumber: 3.1 Consensus size: 23
8504484 ATTATTTTAA
**
8504494 ATTATTTTTT-AAAT-TTTGAAT
1 ATTATTTTTTAAAATATTAAAAT
8504515 ATTATTTTTTAAAATATTAAAAT
1 ATTATTTTTTAAAATATTAAAAT
*
8504538 A-TATATATTTAATAATA-TAAAAT
1 ATTAT-TTTTTAA-AATATTAAAAT
8504561 ATT
1 ATT
8504564 TAAATATTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
21 10 0.24
22 7 0.17
23 19 0.46
24 5 0.12
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (23 bp):
ATTATTTTTTAAAATATTAAAAT
Found at i:8504844 original size:30 final size:31
Alignment explanation
Indices: 8504808--8504870 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 31
8504798 AAAAAATCAA
* * *
8504808 TTATTTTGATAATAAATTAAATT-TTTTATG
1 TTATTTTGATAAAAAAATAAATTATTTAATG
*
8504838 TTATTTTTATAAAAAAATAAATTATTTAATG
1 TTATTTTGATAAAAAAATAAATTATTTAATG
8504869 TT
1 TT
8504871 TAAAAAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 20 0.71
31 8 0.29
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (31 bp):
TTATTTTGATAAAAAAATAAATTATTTAATG
Found at i:8504884 original size:18 final size:19
Alignment explanation
Indices: 8504869--8504906 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
8504859 TTATTTAATG
8504869 TTTAAAAAA-AATTTAAAA
1 TTTAAAAAATAATTTAAAA
8504887 TTTAAAAAATAATTTAAAA
1 TTTAAAAAATAATTTAAAA
8504906 T
1 T
8504907 AATATTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (19 bp):
TTTAAAAAATAATTTAAAA
Found at i:8504902 original size:12 final size:13
Alignment explanation
Indices: 8504885--8504918 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
8504875 AAAAATTTAA
8504885 AATTTAAAA-AAT
1 AATTTAAAATAAT
8504897 AATTTAAAATAAT
1 AATTTAAAATAAT
8504910 -ATTTAAAAT
1 AATTTAAAAT
8504919 TTACAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 18 0.86
13 3 0.14
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
AATTTAAAATAAT
Found at i:8504916 original size:31 final size:30
Alignment explanation
Indices: 8504869--8504928 Score: 93
Period size: 31 Copynumber: 2.0 Consensus size: 30
8504859 TTATTTAATG
8504869 TTTAAAAAAAATTTAAAATTTAAAAAATAA
1 TTTAAAAAAAATTTAAAATTTAAAAAATAA
* *
8504899 TTTAAAATAATATTTAAAATTTACAAAATA
1 TTTAAAA-AAAATTTAAAATTTAAAAAATA
8504929 TATATTATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 7 0.26
31 20 0.74
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (30 bp):
TTTAAAAAAAATTTAAAATTTAAAAAATAA
Found at i:8505000 original size:22 final size:21
Alignment explanation
Indices: 8504970--8505106 Score: 58
Period size: 22 Copynumber: 6.6 Consensus size: 21
8504960 AAATTTTTTA
*
8504970 AAATTAATAAGAAAAAATAATT
1 AAATAAATAA-AAAAAATAATT
*
8504992 AAATAAATAAACAAAAT-A--
1 AAATAAATAAAAAAAATAATT
* *
8505010 AAAT-AAGAAAAAATATAA--
1 AAATAAATAAAAAAAATAATT
*
8505028 AACTTAAA-AAAAGAAAATAATTT
1 AA-ATAAATAAAA-AAAATAA-TT
* *
8505051 AAAGAAAAAAACAAAAGATAA-T
1 AAATAAATAAA-AAAA-ATAATT
* *
8505073 AAAAAAACTAAAAAAAATAAAT
1 AAATAAA-TAAAAAAAATAATT
*
8505095 AAGTAAA-AAAAA
1 AAATAAATAAAAA
8505107 GAGTGAAAGA
Statistics
Matches: 90, Mismatches: 13, Indels: 26
0.70 0.10 0.20
Matches are distributed among these distances:
17 9 0.10
18 7 0.08
19 5 0.06
20 14 0.16
21 10 0.11
22 29 0.32
23 11 0.12
24 5 0.06
ACGTcount: A:0.75, C:0.03, G:0.04, T:0.18
Consensus pattern (21 bp):
AAATAAATAAAAAAAATAATT
Found at i:8505013 original size:18 final size:17
Alignment explanation
Indices: 8504982--8505093 Score: 64
Period size: 18 Copynumber: 6.2 Consensus size: 17
8504972 ATTAATAAGA
*
8504982 AAAAATAATTAAATAAAT
1 AAAAA-AATAAAATAAAT
8505000 AAACAAAATAAAATAAGA-
1 AAA-AAAATAAAATAA-AT
* *
8505018 AAAAATATAAAACTTAAAA
1 AAAAAAATAAAA--TAAAT
** *
8505037 AAAGAAAATAATTTAAAG
1 AAA-AAAATAAAATAAAT
* *
8505055 AAAAAAACAAAAGATAAT
1 AAAAAAATAAAATA-AAT
*
8505073 AAAAAAACTAAAAAAAAT
1 AAAAAAA-TAAAATAAAT
8505091 AAA
1 AAA
8505094 TAAGTAAAAA
Statistics
Matches: 73, Mismatches: 13, Indels: 16
0.72 0.13 0.16
Matches are distributed among these distances:
17 15 0.21
18 38 0.52
19 14 0.19
20 6 0.08
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.17
Consensus pattern (17 bp):
AAAAAAATAAAATAAAT
Found at i:8505458 original size:21 final size:22
Alignment explanation
Indices: 8505421--8505475 Score: 78
Period size: 21 Copynumber: 2.5 Consensus size: 22
8505411 GAAAGTTTAA
8505421 AATATTTAAATATTTAAAAAA-T
1 AATATTTAAA-ATTTAAAAAAGT
8505443 AATATTTAAAATTTAAAAAAGT
1 AATATTTAAAATTTAAAAAAGT
*
8505465 AAT-TTCAAAAT
1 AATATTTAAAAT
8505476 ATATATTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
21 17 0.55
22 14 0.45
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (22 bp):
AATATTTAAAATTTAAAAAAGT
Found at i:8505499 original size:22 final size:21
Alignment explanation
Indices: 8505465--8505537 Score: 74
Period size: 24 Copynumber: 3.2 Consensus size: 21
8505455 TTAAAAAAGT
*
8505465 AATTTCAAAATATATATTTAA
1 AATTTAAAAATATATATTTAA
8505486 AATTTAAAAAATATATATTAATAA
1 AATTT-AAAAATATATATT--TAA
**
8505510 AATATTTCAAATATATATTTCAA
1 AAT-TTAAAAATATATATTT-AA
8505533 AATTT
1 AATTT
8505538 TTAAAGTTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
21 5 0.11
22 15 0.34
23 5 0.11
24 17 0.39
25 2 0.05
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.42
Consensus pattern (21 bp):
AATTTAAAAATATATATTTAA
Found at i:8507854 original size:20 final size:20
Alignment explanation
Indices: 8507825--8507864 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
8507815 GACGACTATA
*
8507825 AAATAGAAGAAATAAACTTT
1 AAATAAAAGAAATAAACTTT
8507845 AAATAAAAGAAATAAACTTT
1 AAATAAAAGAAATAAACTTT
8507865 TATATGGATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.62, C:0.05, G:0.07, T:0.25
Consensus pattern (20 bp):
AAATAAAAGAAATAAACTTT
Found at i:8508520 original size:18 final size:16
Alignment explanation
Indices: 8508489--8508535 Score: 58
Period size: 18 Copynumber: 2.8 Consensus size: 16
8508479 GTCATCTCAA
* *
8508489 TAAATAATTTAAAATT
1 TAAAAAATTAAAAATT
8508505 TATAAAATATTAAAAATT
1 TA-AAAA-ATTAAAAATT
8508523 TAAAAAATTAAAA
1 TAAAAAATTAAAA
8508536 TCCAAGAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 9 0.33
17 7 0.26
18 11 0.41
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
TAAAAAATTAAAAATT
Found at i:8508525 original size:8 final size:8
Alignment explanation
Indices: 8508489--8508535 Score: 51
Period size: 8 Copynumber: 5.6 Consensus size: 8
8508479 GTCATCTCAA
8508489 TAAATAATT
1 TAAA-AATT
8508498 T-AAAATT
1 TAAAAATT
8508505 TATAAAATAT
1 TA-AAAAT-T
8508515 TAAAAATT
1 TAAAAATT
*
8508523 TAAAAAAT
1 TAAAAATT
8508531 TAAAA
1 TAAAA
8508536 TCCAAGAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
7 5 0.15
8 15 0.44
9 11 0.32
10 3 0.09
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
TAAAAATT
Found at i:8512216 original size:72 final size:72
Alignment explanation
Indices: 8512121--8512359 Score: 365
Period size: 72 Copynumber: 3.3 Consensus size: 72
8512111 AAATGCTAAA
* *
8512121 CTAGTTTTATCAATAGTTATTTATGTTTGATTTTTGGATATTGAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
*
8512186 GTGTAAT
66 ATGTAAT
* *
8512193 CTAGTTTTATCAATGGCTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
8512258 ATGTAAT
66 ATGTAAT
* * *
8512265 CTACTTTTATTAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
*
8512330 ACT-AAAT
66 A-TGTAAT
*
8512337 -TAGTTTTACCAATAGTTGTTTAT
1 CTAGTTTTATCAATAGTTGTTTAT
8512360 ATATGATTTT
Statistics
Matches: 152, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
71 20 0.13
72 131 0.86
73 1 0.01
ACGTcount: A:0.24, C:0.07, G:0.14, T:0.54
Consensus pattern (72 bp):
CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
ATGTAAT
Found at i:8515184 original size:2 final size:2
Alignment explanation
Indices: 8515177--8515203 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8515167 ACATGCATGA
8515177 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
8515204 ACCTGTTCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8530482 original size:36 final size:36
Alignment explanation
Indices: 8530435--8530506 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
8530425 GAGTGAGACA
8530435 TTGAATGTGATGGAAAAGGTGTAGTGGAGGTAGGTG
1 TTGAATGTGATGGAAAAGGTGTAGTGGAGGTAGGTG
* *
8530471 TTGAATGTGATGGGATAGGTGTAGTGGAGGTAGGTG
1 TTGAATGTGATGGAAAAGGTGTAGTGGAGGTAGGTG
8530507 GCGTATTTGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.25, C:0.00, G:0.46, T:0.29
Consensus pattern (36 bp):
TTGAATGTGATGGAAAAGGTGTAGTGGAGGTAGGTG
Found at i:8535777 original size:31 final size:31
Alignment explanation
Indices: 8535739--8535804 Score: 123
Period size: 31 Copynumber: 2.1 Consensus size: 31
8535729 TTAAGTATTG
*
8535739 TTATCCCACATCTTTTATATATTGGATTTTT
1 TTATCCCACATCTTTTATATATTAGATTTTT
8535770 TTATCCCACATCTTTTATATATTAGATTTTT
1 TTATCCCACATCTTTTATATATTAGATTTTT
8535801 TTAT
1 TTAT
8535805 TTGTATTAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.24, C:0.15, G:0.05, T:0.56
Consensus pattern (31 bp):
TTATCCCACATCTTTTATATATTAGATTTTT
Found at i:8547257 original size:5 final size:5
Alignment explanation
Indices: 8547247--8547298 Score: 52
Period size: 5 Copynumber: 10.2 Consensus size: 5
8547237 AGGTCACCTG
** *
8547247 CTGTT CTGTT CTGCC CTGTT CT-TCT GCTGTT CTGTT CTGTT CTGTC CTGTT
1 CTGTT CTGTT CTGTT CTGTT CTGT-T -CTGTT CTGTT CTGTT CTGTT CTGTT
8547298 C
1 C
8547299 CTTTCATTTC
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
4 1 0.03
5 33 0.87
6 3 0.08
7 1 0.03
ACGTcount: A:0.00, C:0.29, G:0.19, T:0.52
Consensus pattern (5 bp):
CTGTT
Found at i:8547284 original size:13 final size:13
Alignment explanation
Indices: 8547244--8547285 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
8547234 TTAAGGTCAC
8547244 CTGCTGTTCTGTT
1 CTGCTGTTCTGTT
8547257 CTGCCCTGTTC--TT
1 CTG--CTGTTCTGTT
8547270 CTGCTGTTCTGTT
1 CTGCTGTTCTGTT
8547283 CTG
1 CTG
8547286 TTCTGTCCTG
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
11 6 0.24
13 13 0.52
15 6 0.24
ACGTcount: A:0.00, C:0.29, G:0.21, T:0.50
Consensus pattern (13 bp):
CTGCTGTTCTGTT
Found at i:8548296 original size:26 final size:28
Alignment explanation
Indices: 8548250--8548304 Score: 87
Period size: 26 Copynumber: 2.0 Consensus size: 28
8548240 ATTTTACCTG
8548250 GTGAAAAAAATCAAAATTCTGAAGTATCT
1 GTGAAAAAAA-CAAAATTCTGAAGTATCT
8548279 GTGAAAAAAA-AAAA-TCTGAAGTATCT
1 GTGAAAAAAACAAAATTCTGAAGTATCT
8548305 TATTTGTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 12 0.46
27 4 0.15
29 10 0.38
ACGTcount: A:0.51, C:0.09, G:0.15, T:0.25
Consensus pattern (28 bp):
GTGAAAAAAACAAAATTCTGAAGTATCT
Found at i:8548504 original size:3 final size:3
Alignment explanation
Indices: 8548496--8548534 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
8548486 CAAAAGAAAA
8548496 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
8548535 GATAACTGAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:8550290 original size:42 final size:42
Alignment explanation
Indices: 8550243--8550326 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
8550233 AATCCTAATT
**
8550243 GGGAAAATAATTCTCTTATTCTAAGAAACTACTAAAACATAA
1 GGGAAAATAATTCTCTTAAACTAAGAAACTACTAAAACATAA
* * *
8550285 GGGAAAATAGTTCTCTTAAACTAATAAACTACTAAAAGATAA
1 GGGAAAATAATTCTCTTAAACTAAGAAACTACTAAAACATAA
8550327 AATAAAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.49, C:0.13, G:0.11, T:0.27
Consensus pattern (42 bp):
GGGAAAATAATTCTCTTAAACTAAGAAACTACTAAAACATAA
Found at i:8550379 original size:19 final size:18
Alignment explanation
Indices: 8550357--8550396 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
8550347 TGAATAAAAC
8550357 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
8550376 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
8550394 TTA
1 TTA
8550397 AAAAATATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:8553355 original size:33 final size:33
Alignment explanation
Indices: 8553313--8553436 Score: 212
Period size: 33 Copynumber: 3.8 Consensus size: 33
8553303 TTTCTTCTTG
*
8553313 ACATTCCAGCTACTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
* *
8553346 ACATTCCAGCTCCTGTCCAGTAACTAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
*
8553379 ACATTCCAGCTCCCGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
8553412 ACATTCCAGCTCCTGTCCAGCAACC
1 ACATTCCAGCTCCTGTCCAGCAACC
8553437 TGAAACAGAG
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 84 1.00
ACGTcount: A:0.30, C:0.41, G:0.10, T:0.19
Consensus pattern (33 bp):
ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
Found at i:8555232 original size:13 final size:13
Alignment explanation
Indices: 8555214--8555241 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
8555204 TTCAAAAACT
8555214 AGTAAACAAGCTG
1 AGTAAACAAGCTG
8555227 AGTAAACAAGCTG
1 AGTAAACAAGCTG
8555240 AG
1 AG
8555242 AATGGATGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.14, G:0.25, T:0.14
Consensus pattern (13 bp):
AGTAAACAAGCTG
Found at i:8565532 original size:33 final size:33
Alignment explanation
Indices: 8565470--8565537 Score: 82
Period size: 33 Copynumber: 2.1 Consensus size: 33
8565460 ATGTCCAAAC
* * * * *
8565470 AATAACAATAAAATAGTAGTAACATAATAAGAA
1 AATAACAATAAAACAGTAGGAAAACAATAAAAA
*
8565503 AATAACATTAAAACAGTAGGAAAACAATAAAAA
1 AATAACAATAAAACAGTAGGAAAACAATAAAAA
8565536 AA
1 AA
8565538 ATAATAGAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.66, C:0.07, G:0.09, T:0.18
Consensus pattern (33 bp):
AATAACAATAAAACAGTAGGAAAACAATAAAAA
Found at i:8568019 original size:43 final size:43
Alignment explanation
Indices: 8567952--8568190 Score: 261
Period size: 42 Copynumber: 5.6 Consensus size: 43
8567942 GTTTATGAAA
* * * *
8567952 AAACGCCGCTATAGAACATAACCTTTAGAGGCTCTTTTCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAC
* * *
8567995 AAACTCCGCTAAAGAACATGACCTTTAGCGGGGC-TTTCTCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAC
* **
8568037 AAACGTCGCTAAAGAACATGACCTTTAGCGGTACTTTTCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAC
* * *
8568080 AAACGCCGCTATAGAACA-GACCTTTAGCGACGCTTTTGCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAC
* ** * ** *
8568122 AAATGCCATTATA-AA-ATAGACCTTTAGTTGCGCTTTTCTCAC
1 AAACGCCGCTAAAGAACAT-GACCTTTAGCGGCGCTTTTCCCAC
8568164 AAACGCCGCTAAAGAACATGACCTTTA
1 AAACGCCGCTAAAGAACATGACCTTTA
8568191 AAAAATTATT
Statistics
Matches: 161, Mismatches: 30, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
40 1 0.01
41 2 0.01
42 95 0.59
43 61 0.38
44 2 0.01
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAC
Found at i:8568062 original size:85 final size:85
Alignment explanation
Indices: 8567952--8568190 Score: 272
Period size: 85 Copynumber: 2.8 Consensus size: 85
8567942 GTTTATGAAA
* *
8567952 AAACGCCGCTATAGAACATAACCTTTAGAGGCTCTTTTCCCACAAACTCCGCTAAAGAACATGAC
1 AAACGCCGCTATAGAACATGACCTTTAGAGGCTCTTTTCCCACAAACGCCGCTAAAGAACATGAC
**
8568017 CTTTAGCGGGGC-TTTCTCAC
66 CTTTAGCGACGCTTTTC-CAC
* * * *
8568037 AAACGTCGCTAAAGAACATGACCTTTAGCGG-TACTTTTCCCACAAACGCCGCTATAGAACA-GA
1 AAACGCCGCTATAGAACATGACCTTTAGAGGCT-CTTTTCCCACAAACGCCGCTAAAGAACATGA
8568100 CCTTTAGCGACGCTTTTGCCAC
65 CCTTTAGCGACGCTTTT-CCAC
* ** ** * *
8568122 AAATGCCATTATA-AA-ATAGACCTTTAGTTGCGCTTTTCTCACAAACGCCGCTAAAGAACATGA
1 AAACGCCGCTATAGAACAT-GACCTTTAGAGGCTCTTTTCCCACAAACGCCGCTAAAGAACATGA
8568185 CCTTTA
65 CCTTTA
8568191 AAAAATTATT
Statistics
Matches: 130, Mismatches: 18, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
83 2 0.02
84 52 0.40
85 75 0.58
86 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.26
Consensus pattern (85 bp):
AAACGCCGCTATAGAACATGACCTTTAGAGGCTCTTTTCCCACAAACGCCGCTAAAGAACATGAC
CTTTAGCGACGCTTTTCCAC
Found at i:8572038 original size:21 final size:21
Alignment explanation
Indices: 8572014--8572054 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8572004 CCCTATCCCC
*
8572014 TAAACCCTAAATCATAAAACA
1 TAAACCCGAAATCATAAAACA
*
8572035 TAAACCCGAAATCATTAAAC
1 TAAACCCGAAATCATAAAAC
8572055 CCTAGCCCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.54, C:0.24, G:0.02, T:0.20
Consensus pattern (21 bp):
TAAACCCGAAATCATAAAACA
Found at i:8572093 original size:14 final size:14
Alignment explanation
Indices: 8572076--8572153 Score: 54
Period size: 14 Copynumber: 5.5 Consensus size: 14
8572066 ACCCTTGACA
8572076 CCTAAACCTTAAAC
1 CCTAAACCTTAAAC
8572090 CCT-AACTCTTAAAC
1 CCTAAAC-CTTAAAC
* * *
8572104 CATAATCCATAAAC
1 CCTAAACCTTAAAC
* *
8572118 CTTAAA--ATAGTAAC
1 CCTAAACCTTA--AAC
8572132 TCCTAAACCTTAAAC
1 -CCTAAACCTTAAAC
8572147 CCTAAAC
1 CCTAAAC
8572154 TAAAATGATA
Statistics
Matches: 50, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
12 3 0.06
13 3 0.06
14 32 0.64
15 10 0.20
17 2 0.04
ACGTcount: A:0.44, C:0.31, G:0.01, T:0.24
Consensus pattern (14 bp):
CCTAAACCTTAAAC
Found at i:8572665 original size:38 final size:39
Alignment explanation
Indices: 8572597--8572683 Score: 117
Period size: 38 Copynumber: 2.2 Consensus size: 39
8572587 TAGAAAGCAC
*
8572597 CGCTAATGCTCGATCTATAGCGGAGTTTTTCAAGAAGCG-
1 CGCTAATGCTCGATC-ATAGCGGAGTTTTTCAAAAAGCGT
8572636 CTGCTAATGCTCGATC-TAGCGGCA-TTTTTCAAAAAGCGT
1 C-GCTAATGCTCGATCATAGCGG-AGTTTTTCAAAAAGCGT
8572675 CGCTAATGC
1 CGCTAATGC
8572684 CACTAAAGCT
Statistics
Matches: 44, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
38 27 0.61
39 3 0.07
40 14 0.32
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (39 bp):
CGCTAATGCTCGATCATAGCGGAGTTTTTCAAAAAGCGT
Found at i:8572785 original size:40 final size:40
Alignment explanation
Indices: 8572730--8573111 Score: 226
Period size: 40 Copynumber: 9.7 Consensus size: 40
8572720 AATTTTTTGT
* * *
8572730 GGCGTTTTTCAAAAAGCGTCGCTAATGCTCGACCTATAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
** *
8572770 GGCGTTTTTCAAAAAGTACCTCTAATGCTCGATCTATAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
* * * * * * *
8572810 GACATTTTTCAAAAAGCACCGCTAATACTTGATCTATAAC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
* * * * *
8572850 GGCATTTTTCAAAAAGTGACACTAATTCTCGATCTACAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
* * *
8572890 GACGTTTTTC-AAAAGCGTCACTAATGC-C-A-CTAAAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
* **** * * * * * * * * *
8572926 -TC-AACAT-AAAACGACGGC-GT--TGTCCCTAATTTTTTTGT
1 GGCGTTTTTCAAAAAG-CGCCACTAATG-CTC-GA-TCTATAGC
* * * * *
8572964 GGCATTTTTCAAAAAGAGCCCCTAATGGTCGACCTATAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
* * * *
8573004 GGCGTTTTTTAGAAAGCGCCACTAATACTCAATCTATAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
*
8573044 GGCGTTTTTCAAAAAGCGTCACTAATGCTCGATCTATAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
* * *
8573084 GGTGTTTTTCAAAAAGTGCCGCTAATGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGC
8573112 CACTAATGCT
Statistics
Matches: 253, Mismatches: 75, Indels: 28
0.71 0.21 0.08
Matches are distributed among these distances:
32 2 0.01
33 1 0.00
34 7 0.03
35 4 0.02
36 7 0.03
37 1 0.00
38 3 0.01
39 15 0.06
40 203 0.80
41 7 0.03
42 1 0.00
43 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30
Consensus pattern (40 bp):
GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
Found at i:8572797 original size:192 final size:193
Alignment explanation
Indices: 8572462--8572865 Score: 519
Period size: 192 Copynumber: 2.1 Consensus size: 193
8572452 AATGTTTTTT
* * *
8572462 ACGGCGTTTTTCAAAAAGCCTCGCTAATGCCACTAAAGCTCAACATAAAACGATGGCGTCTTACT
1 ACGGCATTTTTCAAAAAGCCTCGCTAATGCCACTAAAGCTCAACATAAAACAACGGCGTCTTACT
* * ** *
8572527 GAATTTTTTGCGGCATTTTTCAAAAAGCGCCGCTAACGGTCAACTTATAGTTGCGATTTTTAGAA
66 GAATTTTTTGCGGCATTTTTCAAAAAGCGCCGCTAACGCTCAACCTATAGCGGCGATTTTTAAAA
* * * * *
8572592 AGCACCGCTAATGCTCGATCTATAGCGGA-GTTTTTCAAGAAGCGCTGCTAATGCTCGATC-TA
131 AGCACCGCTAATGCTCGATCTATAGC-GACATTTTTCAAAAAGCACCGCTAATACTCGATCATA
* * *
8572654 GCGGCATTTTTCAAAAAGCGTCGCTAATGCCACTAAAGCTCAACATAAAACAACGGCGT-TGTGC
1 ACGGCATTTTTCAAAAAGCCTCGCTAATGCCACTAAAGCTCAACATAAAACAACGGCGTCT-TAC
* * * * * *
8572718 TTAATTTTTTGTGGCGTTTTTCAAAAAGCGTCGCTAATGCTCGACCTATAGCGGCG-TTTTTCAA
65 TGAATTTTTTGCGGCATTTTTCAAAAAGCGCCGCTAACGCTCAACCTATAGCGGCGATTTTT-AA
* * *
8572782 AAAGTACCTCTAATGCTCGATCTATAGCGACATTTTTCAAAAAGCACCGCTAATACTTGATCTAT
129 AAAGCACCGCTAATGCTCGATCTATAGCGACATTTTTCAAAAAGCACCGCTAATACTCGATC-AT
8572847 A
193 A
8572848 ACGGCATTTTTCAAAAAG
1 ACGGCATTTTTCAAAAAG
8572866 TGACACTAAT
Statistics
Matches: 181, Mismatches: 26, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
191 8 0.04
192 154 0.85
194 19 0.10
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (193 bp):
ACGGCATTTTTCAAAAAGCCTCGCTAATGCCACTAAAGCTCAACATAAAACAACGGCGTCTTACT
GAATTTTTTGCGGCATTTTTCAAAAAGCGCCGCTAACGCTCAACCTATAGCGGCGATTTTTAAAA
AGCACCGCTAATGCTCGATCTATAGCGACATTTTTCAAAAAGCACCGCTAATACTCGATCATA
Found at i:8572978 original size:194 final size:195
Alignment explanation
Indices: 8572774--8573161 Score: 519
Period size: 194 Copynumber: 2.0 Consensus size: 195
8572764 TATAGCGGCG
* * *
8572774 TTTTTCAAAAAGTA-CCTCTAATGCTCGATCTATAGCGACATTTTTCAAAAAGCACCGCTAATAC
1 TTTTTCAAAAAG-AGCCCCTAATGCTCGACCTATAGCGACATTTTTCAAAAAGCACCACTAATAC
** * *
8572838 TTGATCTATAACGGCATTTTTCAAAAAGTGACACTAATTCTCGATCTACAGCGACGTTTTTC-AA
65 TCAATCTATAACGGCATTTTTCAAAAAGCGACACTAATGCTCGATCTACAGCGACGTTTTTCAAA
*
8572902 AAGCGTCACTAATGCCACTAAAGCTCAACATAAAACGACGGCGTTGTCCCTAATTTTTTTGTGGC
130 AAGCGCCACTAATGCCACTAAAGCTCAACATAAAACGACGGCGTTGTCCCTAATTTTTTTGTGGC
8572967 A
195 A
* * * * * *
8572968 TTTTTCAAAAAGAGCCCCTAATGGTCGACCTATAGCGGCGTTTTTTAGAAAGCGCCACTAATACT
1 TTTTTCAAAAAGAGCCCCTAATGCTCGACCTATAGCGACATTTTTCAAAAAGCACCACTAATACT
* * * * **
8573033 CAATCTATAGCGGCGTTTTTCAAAAAGCGTCACTAATGCTCGATCTATAGCGGTGTTTTTCAAAA
66 CAATCTATAACGGCATTTTTCAAAAAGCGACACTAATGCTCGATCTACAGCGACGTTTTTCAAAA
* * * * * *
8573098 AGTGCCGCTAATGCCACTAATGCTCAACATAAAACGACGGTGTTGTGCTTAATTTTTTTGTGGC
131 AGCGCCACTAATGCCACTAAAGCTCAACATAAAACGACGGCGTTGTCCCTAATTTTTTTGTGGC
8573162 GCTTTTCCGC
Statistics
Matches: 166, Mismatches: 26, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
193 1 0.01
194 105 0.63
195 60 0.36
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (195 bp):
TTTTTCAAAAAGAGCCCCTAATGCTCGACCTATAGCGACATTTTTCAAAAAGCACCACTAATACT
CAATCTATAACGGCATTTTTCAAAAAGCGACACTAATGCTCGATCTACAGCGACGTTTTTCAAAA
AGCGCCACTAATGCCACTAAAGCTCAACATAAAACGACGGCGTTGTCCCTAATTTTTTTGTGGCA
Found at i:8573041 original size:234 final size:231
Alignment explanation
Indices: 8572582--8573111 Score: 670
Period size: 234 Copynumber: 2.3 Consensus size: 231
8572572 TATAGTTGCG
* * * *
8572582 ATTTTT-AGAAAGCACCGCTAATGCTCGATCTATAGCGGAGTTTTTCAAGAAGCGCTGCTAATGC
1 ATTTTTCAAAAAGCACCGCTAATGCTCGATCTATAGCGGA-TTTTTCAAAAAGTGCTACTAATGC
* *
8572646 TCGATCTAGCGGCATTTTTCAAAAAGCGTCGCTAATGCCACTAAAGCTCAACATAAAACAACGGC
65 TCGATCTAGCGACATTTTTCAAAAAGCGTCACTAATGCCACTAAAGCTCAACATAAAACAACGGC
* * * * * *
8572711 GTTGTGCTTAATTTTTTGTGGCGTTTTTCAAAAAGCGTCGCTAATGCTCGACCTATAGCGGCGTT
130 GTTGTCCCTAATTTTTTGTGGCATTTTTCAAAAAGAGCCCCTAATGCTCGACCTATAGCGGCGTT
* * * *
8572776 TTTCAAAAAGTACCTCTAATGCTCGATCTATAGCGAC
195 TTTCAAAAAGCACCACTAATACTCAATCTATAGCGAC
* * * *
8572813 ATTTTTCAAAAAGCACCGCTAATACTTGATCTATAACGGCATTTTTCAAAAAGTGAC-ACTAATT
1 ATTTTTCAAAAAGCACCGCTAATGCTCGATCTATAGCGG-ATTTTTCAAAAAGTG-CTACTAATG
* *
8572877 CTCGATCTACAGCGACGTTTTTC-AAAAGCGTCACTAATGCCACTAAAGCTCAACATAAAACGAC
64 CTCGATCT--AGCGACATTTTTCAAAAAGCGTCACTAATGCCACTAAAGCTCAACATAAAACAAC
*
8572941 GGCGTTGTCCCTAATTTTTTTGTGGCATTTTTCAAAAAGAGCCCCTAATGGTCGACCTATAGCGG
127 GGCGTTGTCCCTAA-TTTTTTGTGGCATTTTTCAAAAAGAGCCCCTAATGCTCGACCTATAGCGG
* * * *
8573006 CGTTTTTTAGAAAGCGCCACTAATACTCAATCTATAGCGGC
191 CGTTTTTCAAAAAGCACCACTAATACTCAATCTATAGCGAC
* ** * * **
8573047 GTTTTTCAAAAAGCGTCACTAATGCTCGATCTATAGCGGTGTTTTTCAAAAAGTGCCGCTAATGC
1 ATTTTTCAAAAAGCACCGCTAATGCTCGATCTATAGCGG-ATTTTTCAAAAAGTGCTACTAATGC
8573112 CACTAATGCT
Statistics
Matches: 254, Mismatches: 38, Indels: 11
0.84 0.13 0.04
Matches are distributed among these distances:
231 6 0.02
232 53 0.21
233 54 0.21
234 141 0.56
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.30
Consensus pattern (231 bp):
ATTTTTCAAAAAGCACCGCTAATGCTCGATCTATAGCGGATTTTTCAAAAAGTGCTACTAATGCT
CGATCTAGCGACATTTTTCAAAAAGCGTCACTAATGCCACTAAAGCTCAACATAAAACAACGGCG
TTGTCCCTAATTTTTTGTGGCATTTTTCAAAAAGAGCCCCTAATGCTCGACCTATAGCGGCGTTT
TTCAAAAAGCACCACTAATACTCAATCTATAGCGAC
Found at i:8573223 original size:195 final size:186
Alignment explanation
Indices: 8572786--8573203 Score: 478
Period size: 194 Copynumber: 2.2 Consensus size: 186
8572776 TTTCAAAAAG
* * * * * **
8572786 TACCTCTAATGCTCGATCTATAGCGACATTTTTCAAAAAGCACCGCTAATACTTGATCTATAACG
1 TACCCCTAATGCTCGACCTATAGCGGCATTTTTCAAAAAGCGCCACTAATACTCAATCTATAACG
* * *
8572851 GCATTTTTCAAAAAGTGACACTAATTCTCGATCTACAGCGACGTTTTTCAAAAGCGTCACTAATG
66 GCATTTTTCAAAAAGCGACACTAATGCTCGATCTACAGCGACGTTTTTCAAAAGCGCCACTAATG
*
8572916 CCACTAAAGCTCAACATAAAACGACGGCGTTGTCCCTAATTTTTTTGTGGCATTTT
131 CCACTAAAGCTCAACATAAAACGACGGCGTTGTCCCTAATTTTTTTGTGGCACTTT
* * * *
8572972 TCAAAAAGAGCCCCTAATGGTCGACCTATAGCGGCGTTTTTTAGAAAGCGCCACTAATACTCAAT
1 T-------A-CCCCTAATGCTCGACCTATAGCGGCATTTTTCAAAAAGCGCCACTAATACTCAAT
* * * * ** *
8573037 CTATAGCGGCGTTTTTCAAAAAGCGTCACTAATGCTCGATCTATAGCGGTGTTTTTCAAAAAGTG
58 CTATAACGGCATTTTTCAAAAAGCGACACTAATGCTCGATCTACAGCGACGTTTTTC-AAAAGCG
* * * * * *
8573102 CCGCTAATGCCACTAATGCTCAACATAAAACGACGGTGTTGTGCTTAATTTTTTTGTGGCGCTTT
122 CCACTAATGCCACTAAAGCTCAACATAAAACGACGGCGTTGTCCCTAATTTTTTTGTGGCACTTT
* *
8573167 T-CCGCTAATGCTCGATCTATAGCGGCATTTTTCAAAA
1 TACCCCTAATGCTCGACCTATAGCGGCATTTTTCAAAA
8573204 TGCACCGCTA
Statistics
Matches: 189, Mismatches: 34, Indels: 18
0.78 0.14 0.07
Matches are distributed among these distances:
186 31 0.16
193 1 0.01
194 93 0.49
195 64 0.34
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.31
Consensus pattern (186 bp):
TACCCCTAATGCTCGACCTATAGCGGCATTTTTCAAAAAGCGCCACTAATACTCAATCTATAACG
GCATTTTTCAAAAAGCGACACTAATGCTCGATCTACAGCGACGTTTTTCAAAAGCGCCACTAATG
CCACTAAAGCTCAACATAAAACGACGGCGTTGTCCCTAATTTTTTTGTGGCACTTT
Found at i:8573250 original size:106 final size:106
Alignment explanation
Indices: 8573065--8573261 Score: 322
Period size: 106 Copynumber: 1.9 Consensus size: 106
8573055 AAAAGCGTCA
** ** **
8573065 CTAATGCTCGATCTATAGCGGTGTTTTTCAAAAAGTGCCGCTAATGCCACTAATGCTCAACATAA
1 CTAATGCTCGATCTATAGCGGCATTTTTCAAAAAGCACCGCTAATGCCACTAAAACTCAACATAA
8573130 AACGACGGTGTTGTGCTTAATTTTTTTGTGGCGCTTTTCCG
66 AACGACGGTGTTGTGCTTAATTTTTTTGTGGCGCTTTTCCG
* *
8573171 CTAATGCTCGATCTATAGCGGCATTTTTCAAAATGCACCGCTAGTGCCACTAAAACTCAACATAA
1 CTAATGCTCGATCTATAGCGGCATTTTTCAAAAAGCACCGCTAATGCCACTAAAACTCAACATAA
8573236 AACGACGGTGTTGTGCTTAATTTTTT
66 AACGACGGTGTTGTGCTTAATTTTTT
8573262 ATGGCGTTTT
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
106 83 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (106 bp):
CTAATGCTCGATCTATAGCGGCATTTTTCAAAAAGCACCGCTAATGCCACTAAAACTCAACATAA
AACGACGGTGTTGTGCTTAATTTTTTTGTGGCGCTTTTCCG
Found at i:8573308 original size:40 final size:40
Alignment explanation
Indices: 8573264--8573411 Score: 188
Period size: 40 Copynumber: 3.7 Consensus size: 40
8573254 AATTTTTTAT
* * *
8573264 GGCGTTTTTCAAAAAGCGCCATTAATGCTTGACCTATAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
* * * *
8573304 GGCGTTTTTCAGAAAGTGCCGCTAATGCTCGATCTAAAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
* * *
8573344 TGCATTTTTCAAAAAGTGCCACTAATGCTCGATCTATAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
* *
8573384 AGCGTTTTTCAAAAAGCGCCACCAATGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGC
8573412 CACTAAAGCT
Statistics
Matches: 92, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 92 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (40 bp):
GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
Found at i:8573432 original size:300 final size:300
Alignment explanation
Indices: 8572871--8573468 Score: 829
Period size: 300 Copynumber: 2.0 Consensus size: 300
8572861 AAAAGTGACA
* * ** *
8572871 CTAATTCTCGATCTACAGCGACGTTTTTCAAAAGCGTCACTAATGCCACTAAAGCTCAACATAAA
1 CTAATGCTCGATCTACAGCGACATTTTTCAAAAGCACCACTAATGCCACTAAAACTCAACATAAA
* * *
8572936 ACGACGGCGTTGTCCCTAATTTTTTTGTGGCATTTTTCAAAAAGAGCCCCTAATGGTCGACCTAT
66 ACGACGGCGTTGTCCCTAATTTTTTTATGGCATTTTTCAAAAAGAGCCACTAATGCTCGACCTAT
* * * *
8573001 AGCGGCGTTTTTTAGAAAGCGCCACTAATACTCAATCTATAGCGGCGTTTTTCAAAAAGCGTCAC
131 AGCGGCGTTTTTCAGAAAGCGCCACTAATACTCAATCTAAAGCGGCATTTTTCAAAAAGCGCCAC
* * * * * * *
8573066 TAATGCTCGATCTATAGCGGTGTTTTTCAAAAAGTGCCGCTAATGCCACTAATGCTCAACATAAA
196 TAATGCTCGATCTATAGCAGCGTTTTTCAAAAAGCGCCACCAATGCCACTAAAGCTCAAAATAAA
**
8573131 ACGACGGTGTTGTGCTTAATTTTTTTGTGGCGCTTTTCCG
261 ACGACGACGTTGTGCTTAATTTTTTTGTGGCGCTTTTCCG
* * * *
8573171 CTAATGCTCGATCTATAGCGGCATTTTTCAAAATGCACCGCTAGTGCCACTAAAACTCAACATAA
1 CTAATGCTCGATCTACAGCGACATTTTTCAAAA-GCACCACTAATGCCACTAAAACTCAACATAA
* * * * * * *
8573236 AACGACGGTGTTGTGCTTAA-TTTTTTATGGCGTTTTTCAAAAAGCGCCATTAATGCTTGACCTA
65 AACGACGGCGTTGTCCCTAATTTTTTTATGGCATTTTTCAAAAAGAGCCACTAATGCTCGACCTA
* * * * * *
8573300 TAGCGGCGTTTTTCAGAAAGTGCCGCTAATGCTCGATCTAAAGCTGCATTTTTCAAAAAGTGCCA
130 TAGCGGCGTTTTTCAGAAAGCGCCACTAATACTCAATCTAAAGCGGCATTTTTCAAAAAGCGCCA
8573365 CTAATGCTCGATCTATAGCAGCGTTTTTCAAAAAGCGCCACCAATGCCACTAAAGCTCAAAATAA
195 CTAATGCTCGATCTATAGCAGCGTTTTTCAAAAAGCGCCACCAATGCCACTAAAGCTCAAAATAA
*
8573430 AACGACGACGTTGTGCTTAATTTTTTTGTGGCGTTTTTC
260 AACGACGACGTTGTGCTTAATTTTTTTGTGGCGCTTTTC
8573469 AAAAAGTGCC
Statistics
Matches: 258, Mismatches: 39, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
300 215 0.83
301 43 0.17
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.31
Consensus pattern (300 bp):
CTAATGCTCGATCTACAGCGACATTTTTCAAAAGCACCACTAATGCCACTAAAACTCAACATAAA
ACGACGGCGTTGTCCCTAATTTTTTTATGGCATTTTTCAAAAAGAGCCACTAATGCTCGACCTAT
AGCGGCGTTTTTCAGAAAGCGCCACTAATACTCAATCTAAAGCGGCATTTTTCAAAAAGCGCCAC
TAATGCTCGATCTATAGCAGCGTTTTTCAAAAAGCGCCACCAATGCCACTAAAGCTCAAAATAAA
ACGACGACGTTGTGCTTAATTTTTTTGTGGCGCTTTTCCG
Found at i:8573536 original size:40 final size:40
Alignment explanation
Indices: 8573460--8573564 Score: 122
Period size: 40 Copynumber: 2.6 Consensus size: 40
8573450 TTTTTTTGTG
* *
8573460 GCGTTTTTCAAAAAGTGCCCCTAATAGTCGACCTATAACA
1 GCGTTTTTCAAAAAGCGCCGCTAATAGTCGACCTATAACA
* * * * *
8573500 GCGTTTTTCAGAAAGCGCCGCTAGT-GCTCGATCTATAGCT
1 GCGTTTTTCAAAAAGCGCCGCTAATAG-TCGACCTATAACA
*
8573540 GCGTTTTTCAAAAAGCGTCGCTAAT
1 GCGTTTTTCAAAAAGCGCCGCTAAT
8573565 GCCACTAAAG
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.02
40 53 0.98
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.30
Consensus pattern (40 bp):
GCGTTTTTCAAAAAGCGCCGCTAATAGTCGACCTATAACA
Found at i:8573566 original size:195 final size:194
Alignment explanation
Indices: 8573168--8573566 Score: 548
Period size: 195 Copynumber: 2.1 Consensus size: 194
8573158 TGGCGCTTTT
* * * * * *
8573168 CCGCTAATGCTCGATCTATAGCGGCATTTTTCAAAATGCACCGCTAGTGCCACTAAAACTCAACA
1 CCGCTAATGCTCGATCTATAGCAGCATTTTTCAAAAAGCACCACCAATGCCACTAAAACTCAAAA
** * *
8573233 TAAAACGACGGTGTTGTGCTTAATTTTTTATGGCGTTTTTCAAAAAGCGCCATTAATGCTTGACC
66 TAAAACGACGACGTTGTGCTTAATTTTTTATGGCGTTTTTCAAAAAGCGCCACTAATGCTCGACC
* * * *
8573298 TATAGCGGCGTTTTTCAGAAAGTGCCGCTAATGCTCGATCTAAAGCTGCATTTTTCAAAAAGTG
131 TATAACAGCGTTTTTCAGAAAGCGCCGCTAATGCTCGATCTAAAGCTGCATTTTTCAAAAAGCG
* * * *
8573362 CCACTAATGCTCGATCTATAGCAGCGTTTTTCAAAAAGCGCCACCAATGCCACTAAAGCTCAAAA
1 CCGCTAATGCTCGATCTATAGCAGCATTTTTCAAAAAGCACCACCAATGCCACTAAAACTCAAAA
* * *
8573427 TAAAACGACGACGTTGTGCTTAATTTTTTTGTGGCGTTTTTCAAAAAGTGCCCCTAATAG-TCGA
66 TAAAACGACGACGTTGTGCTTAA-TTTTTTATGGCGTTTTTCAAAAAGCGCCACTAAT-GCTCGA
* * *
8573491 CCTATAACAGCGTTTTTCAGAAAGCGCCGCTAGTGCTCGATCTATAGCTGCGTTTTTCAAAAAGC
129 CCTATAACAGCGTTTTTCAGAAAGCGCCGCTAATGCTCGATCTAAAGCTGCATTTTTCAAAAAGC
8573556 G
194 G
*
8573557 TCGCTAATGC
1 CCGCTAATGC
8573567 CACTAAAGCT
Statistics
Matches: 177, Mismatches: 26, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
194 76 0.43
195 100 0.56
196 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (194 bp):
CCGCTAATGCTCGATCTATAGCAGCATTTTTCAAAAAGCACCACCAATGCCACTAAAACTCAAAA
TAAAACGACGACGTTGTGCTTAATTTTTTATGGCGTTTTTCAAAAAGCGCCACTAATGCTCGACC
TATAACAGCGTTTTTCAGAAAGCGCCGCTAATGCTCGATCTAAAGCTGCATTTTTCAAAAAGCG
Found at i:8573677 original size:40 final size:40
Alignment explanation
Indices: 8573619--8573743 Score: 160
Period size: 40 Copynumber: 3.1 Consensus size: 40
8573609 TTTTGTGGCA
* * *
8573619 TTTTTCAAAAAGCACCGCTAATGGTCGACCTATAGCGGCG
1 TTTTTCAAAAAGCGCCGCTAATGCTCAACCTATAGCGGCG
** * *
8573659 TTTTTCAAAAAATGCCGCTAGTGCTCAATCTATAGCGGCG
1 TTTTTCAAAAAGCGCCGCTAATGCTCAACCTATAGCGGCG
** *
8573699 TTTTTCAAAAAGCGCCGCTAATGCTCAATATATAGCTGCG
1 TTTTTCAAAAAGCGCCGCTAATGCTCAACCTATAGCGGCG
8573739 TTTTT
1 TTTTT
8573744 TCCCCAAACG
Statistics
Matches: 73, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 73 1.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.31
Consensus pattern (40 bp):
TTTTTCAAAAAGCGCCGCTAATGCTCAACCTATAGCGGCG
Found at i:8573693 original size:156 final size:155
Alignment explanation
Indices: 8573308--8573722 Score: 596
Period size: 155 Copynumber: 2.7 Consensus size: 155
8573298 TATAGCGGCG
* * * * * * * *
8573308 TTTTTCAGAAAGTGCCGCTAATGCTCGATCTAAAGCTGCATTTTTCAAAAAGTGCCACTAATGCT
1 TTTTTCAAAAAGTGCCGCTAATGGTCGACCTATAGCAGCGTTTTTCAAAAAGTGCCGCTAGTGCT
* *
8573373 CGATCTATAGCAGCGTTTTTCAAAAAGCGCCACCAATGCCACTAAAGCTCAAAATAAAACGACGA
66 CGATCTATAGCAGCGTTTTTCAAAAAGCGCCGCTAATGCCACTAAAGCTCAAAATAAAACGACGA
*
8573438 CGTTGTGCTTAATTTTTTTGTGGCG
131 CGTTGTGCTTAATTTTTTTGTGGCA
* * * * *
8573463 TTTTTCAAAAAGTGCCCCTAATAGTCGACCTATAACAGCGTTTTTCAGAAAGCGCCGCTAGTGCT
1 TTTTTCAAAAAGTGCCGCTAATGGTCGACCTATAGCAGCGTTTTTCAAAAAGTGCCGCTAGTGCT
* * *
8573528 CGATCTATAGCTGCGTTTTTCAAAAAGCGTCGCTAATGCCACTAAAGCTCAATATAAAACGACGA
66 CGATCTATAGCAGCGTTTTTCAAAAAGCGCCGCTAATGCCACTAAAGCTCAAAATAAAACGACGA
8573593 CGTTGTGCTTAATTTTTTTTGTGGCA
131 CGTTGTGCTTAA-TTTTTTTGTGGCA
** * *
8573619 TTTTTCAAAAAGCACCGCTAATGGTCGACCTATAGCGGCGTTTTTCAAAAAATGCCGCTAGTGCT
1 TTTTTCAAAAAGTGCCGCTAATGGTCGACCTATAGCAGCGTTTTTCAAAAAGTGCCGCTAGTGCT
* *
8573684 CAATCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATGC
66 CGATCTATAGCAGCGTTTTTCAAAAAGCGCCGCTAATGC
8573723 TCAATATATA
Statistics
Matches: 228, Mismatches: 31, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
155 124 0.54
156 104 0.46
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (155 bp):
TTTTTCAAAAAGTGCCGCTAATGGTCGACCTATAGCAGCGTTTTTCAAAAAGTGCCGCTAGTGCT
CGATCTATAGCAGCGTTTTTCAAAAAGCGCCGCTAATGCCACTAAAGCTCAAAATAAAACGACGA
CGTTGTGCTTAATTTTTTTGTGGCA
Found at i:8582530 original size:14 final size:14
Alignment explanation
Indices: 8582511--8582541 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8582501 TGCTACCATT
8582511 TTACTATTATATTG
1 TTACTATTATATTG
*
8582525 TTACTATTTTATTG
1 TTACTATTATATTG
8582539 TTA
1 TTA
8582542 TCGTTTGGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.26, C:0.06, G:0.06, T:0.61
Consensus pattern (14 bp):
TTACTATTATATTG
Found at i:8582609 original size:30 final size:31
Alignment explanation
Indices: 8582575--8582634 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
8582565 TATTTTATTG
*
8582575 TTAAA-TTTGTTATTATTTTAAAGGCATTTT
1 TTAAATTTTGTTATTATTTTAAAGACATTTT
* *
8582605 TTAAATTTTTTTATTATTTTAGAGACATTT
1 TTAAATTTTGTTATTATTTTAAAGACATTT
8582635 GCTTGTTAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 5 0.19
31 21 0.81
ACGTcount: A:0.30, C:0.03, G:0.08, T:0.58
Consensus pattern (31 bp):
TTAAATTTTGTTATTATTTTAAAGACATTTT
Found at i:8583826 original size:27 final size:28
Alignment explanation
Indices: 8583795--8583851 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 28
8583785 AAAAGAGTTT
*
8583795 ATTATTATTATTAT-TTATTTGTTAAAA
1 ATTATAATTATTATGTTATTTGTTAAAA
* * *
8583822 ATTATAATTTTTATGTTTTTTGTTTAAA
1 ATTATAATTATTATGTTATTTGTTAAAA
8583850 AT
1 AT
8583852 AAGAAAATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 12 0.48
28 13 0.52
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.61
Consensus pattern (28 bp):
ATTATAATTATTATGTTATTTGTTAAAA
Found at i:8584074 original size:9 final size:9
Alignment explanation
Indices: 8584051--8584077 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
8584041 TATTTTTATA
8584051 TTTTTTAAT
1 TTTTTTAAT
8584060 TTTTTTAAT
1 TTTTTTAAT
8584069 TTTTTTAAT
1 TTTTTTAAT
8584078 AATATATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTTTAAT
Found at i:8584357 original size:26 final size:25
Alignment explanation
Indices: 8584305--8584372 Score: 77
Period size: 26 Copynumber: 2.7 Consensus size: 25
8584295 AATTTTGAAA
* *
8584305 TTTTAGTTTATATTTTTAAGATCTT
1 TTTTATTTTTTATTTTTAAGATCTT
8584330 TTTTATTTTTTATTTTTAAAGAGT-TT
1 TTTTATTTTTTATTTTT-AAGA-TCTT
8584356 TTTT-TTTGTTTATTTTT
1 TTTTATTT-TTTATTTTT
8584373 TTTAGTTTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
25 18 0.47
26 19 0.50
27 1 0.03
ACGTcount: A:0.19, C:0.01, G:0.07, T:0.72
Consensus pattern (25 bp):
TTTTATTTTTTATTTTTAAGATCTT
Found at i:8594263 original size:25 final size:25
Alignment explanation
Indices: 8594204--8594252 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
8594194 GGATTAGACA
*
8594204 TAAAAC-TAGAATTAGACTTAAGTT
1 TAAAACTTAGGATTAGACTTAAGTT
8594228 TAAAACTTAGGATTAGACTTAAGTT
1 TAAAACTTAGGATTAGACTTAAGTT
8594253 AAGAGCTTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.43, C:0.08, G:0.14, T:0.35
Consensus pattern (25 bp):
TAAAACTTAGGATTAGACTTAAGTT
Found at i:8598798 original size:20 final size:20
Alignment explanation
Indices: 8598775--8598824 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
8598765 ATTGACTATT
* *
8598775 TATAAAATTTATTTTGAATA
1 TATAAAATATATTTTAAATA
*
8598795 TATAAACTATATTTTAAATA
1 TATAAAATATATTTTAAATA
*
8598815 T-TAAAGTATA
1 TATAAAATATA
8598825 ACCATTACAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 8 0.31
20 18 0.69
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (20 bp):
TATAAAATATATTTTAAATA
Found at i:8616031 original size:23 final size:22
Alignment explanation
Indices: 8615997--8616039 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
8615987 ATTTTCTCTA
*
8615997 ATTTTTTAAATATTTCTATTTTT
1 ATTTTTTAAATAATT-TATTTTT
*
8616020 ATTTTTTTAATAATTTATTT
1 ATTTTTTAAATAATTTATTT
8616040 GATCGAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (22 bp):
ATTTTTTAAATAATTTATTTTT
Found at i:8616331 original size:26 final size:26
Alignment explanation
Indices: 8616302--8616366 Score: 94
Period size: 26 Copynumber: 2.5 Consensus size: 26
8616292 AGAAATAACT
8616302 GTGCTTTTGAAAAGTAATTTTGAGAA
1 GTGCTTTTGAAAAGTAATTTTGAGAA
* * * *
8616328 GTGCTGTAGAAAATTACTTTTGAGAA
1 GTGCTTTTGAAAAGTAATTTTGAGAA
8616354 GTGCTTTTGAAAA
1 GTGCTTTTGAAAA
8616367 ATTTAAGTGT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (26 bp):
GTGCTTTTGAAAAGTAATTTTGAGAA
Found at i:8616362 original size:13 final size:13
Alignment explanation
Indices: 8616302--8616366 Score: 58
Period size: 13 Copynumber: 5.0 Consensus size: 13
8616292 AGAAATAACT
8616302 GTGCTTTTGAAAA
1 GTGCTTTTGAAAA
** *
8616315 GTAATTTTGAGAA
1 GTGCTTTTGAAAA
* *
8616328 GTGCTGTAGAAAA
1 GTGCTTTTGAAAA
* * *
8616341 TTACTTTTGAGAA
1 GTGCTTTTGAAAA
8616354 GTGCTTTTGAAAA
1 GTGCTTTTGAAAA
8616367 ATTTAAGTGT
Statistics
Matches: 36, Mismatches: 16, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
13 36 1.00
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (13 bp):
GTGCTTTTGAAAA
Found at i:8616581 original size:19 final size:18
Alignment explanation
Indices: 8616520--8616586 Score: 57
Period size: 19 Copynumber: 3.7 Consensus size: 18
8616510 TTTCTAAGTA
* *
8616520 ATTAATATTAATT-AATT
1 ATTAAAATTAATTAAAAT
* *
8616537 ATTAAATTTAATTACAAT
1 ATTAAAATTAATTAAAAT
8616555 A-TATAAATTATATTAAAAT
1 ATTA-AAATTA-ATTAAAAT
8616574 ATTAAAATATAAT
1 ATTAAAAT-TAAT
8616587 AATTAAATAT
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
17 13 0.33
18 8 0.21
19 14 0.36
20 4 0.10
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (18 bp):
ATTAAAATTAATTAAAAT
Found at i:8620115 original size:26 final size:26
Alignment explanation
Indices: 8620079--8620140 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 26
8620069 TCTCTGTTTC
* *
8620079 TTATTCTTTTTGTTTTTTTTTTTA-T
1 TTATTCTTTTTGTTCTTTTATTTACT
8620104 TTCATTCTTTTTGTTCTTTTATTTACT
1 TT-ATTCTTTTTGTTCTTTTATTTACT
8620131 TTATT-TTTTT
1 TTATTCTTTTT
8620141 AATTAACATA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
25 7 0.21
26 23 0.70
27 3 0.09
ACGTcount: A:0.10, C:0.08, G:0.03, T:0.79
Consensus pattern (26 bp):
TTATTCTTTTTGTTCTTTTATTTACT
Found at i:8622363 original size:46 final size:47
Alignment explanation
Indices: 8622227--8622446 Score: 177
Period size: 46 Copynumber: 4.7 Consensus size: 47
8622217 GGAGTAAGGT
* * * *
8622227 GCCGATGACGTGTCCCAGACACGGTCTTACACTGGCTTATATCTCAAG
1 GCCGATGCCATGTCCCAGACA-TGTCTTACACTGGCTTACATCTCAAG
* * * * *
8622275 TG--GAAGTCATATCCCAGACATGGTCTTACACTGAC-TATCATCTCGTA-
1 -GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTTA-CATCTC-AAG
* *
8622322 GCCGACG-CATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAG
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAG
* * * *
8622368 GCCGATG-CATGTTCCAG-CAATGTCTTACACTAGCATT-CGTCTCAAT
1 GCCGATGCCATGTCCCAGAC-ATGTCTTACACTGGC-TTACATCTCAAG
8622414 GCCGATGCCATGTCCCAGACATGGTCTTACACT
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACT
8622447 AGCTCACACA
Statistics
Matches: 140, Mismatches: 19, Indels: 25
0.76 0.10 0.14
Matches are distributed among these distances:
45 2 0.01
46 63 0.45
47 59 0.42
48 15 0.11
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAG
Found at i:8642568 original size:46 final size:45
Alignment explanation
Indices: 8642524--8642896 Score: 462
Period size: 46 Copynumber: 8.2 Consensus size: 45
8642514 ATGAAATGTG
* **
8642524 TAAGACCATGGTTGAAAGATACCATGGCAACATGATTAGAAATGTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGA-CAGAAATGAA
* **
8642570 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAATGAA
* *
8642616 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA-AAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAATGAA
*
8642661 TAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGAC-AGAAATGAA
* * * *
8642707 TAAGACCATGGTTGAAAAATACCATGGCAGCGTGACATAAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAATGAA
* *
8642753 TAAGACCATGGTTGAAAGATACCACGGCAACATGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAATGAA
*
8642799 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAG-AAATGAA
* * * * * *
8642845 TAAGACCATAGTTGAAAGACACTATGGCATCATGTCA-AAGATAAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAA-ATGAA
8642890 TAAGACC
1 TAAGACC
8642897 GTGGATGGGA
Statistics
Matches: 292, Mismatches: 29, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
44 2 0.01
45 52 0.18
46 238 0.82
ACGTcount: A:0.43, C:0.15, G:0.23, T:0.20
Consensus pattern (45 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAATGAA
Found at i:8642770 original size:137 final size:138
Alignment explanation
Indices: 8642524--8642896 Score: 518
Period size: 137 Copynumber: 2.7 Consensus size: 138
8642514 ATGAAATGTG
* * *
8642524 TAAGACCATGGTTGAAAGATACCATGGCAACATGATTA-GAAATGTGTAAGACCATGGTTGAAAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGA-CAGGAAATGAGTAAGACCATGGTTGAAAA
* * ** * *
8642588 ATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACA
65 ATACCATGGCAACATGACATAAAATGAATAAGACCATGGTTGAAAGATACCACGGCAACATGACA
8642653 TGAAAA-AA
130 TGAAAAGAA
* *
8642661 TAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATGAATAAGACCATGGTTGAAAAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAGTAAGACCATGGTTGAAAAA
* *
8642726 TACCATGGCAGCGTGACATAAAATGAATAAGACCATGGTTGAAAGATACCACGGCAACATGACAT
66 TACCATGGCAACATGACATAAAATGAATAAGACCATGGTTGAAAGATACCACGGCAACATGACAT
8642791 GAAAAGAA
131 GAAAAGAA
* * *
8642799 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAGTAAGACCATGGTTGAAAAA
* * * * * *
8642864 CACTATGGCATCATGTCA-AAGATAAATAAGACC
66 TACCATGGCAACATGACATAAAATGAATAAGACC
8642897 GTGGATGGGA
Statistics
Matches: 209, Mismatches: 25, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
137 134 0.64
138 75 0.36
ACGTcount: A:0.43, C:0.15, G:0.23, T:0.20
Consensus pattern (138 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAGTAAGACCATGGTTGAAAAA
TACCATGGCAACATGACATAAAATGAATAAGACCATGGTTGAAAGATACCACGGCAACATGACAT
GAAAAGAA
Found at i:8645362 original size:13 final size:14
Alignment explanation
Indices: 8645331--8645363 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
8645321 TTATTTAATT
8645331 AAAAATAATTTTTA
1 AAAAATAATTTTTA
*
8645345 TAAAATAA-TTTTA
1 AAAAATAATTTTTA
8645358 AAAAAT
1 AAAAAT
8645364 CTACTAAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 10 0.59
14 7 0.41
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
AAAAATAATTTTTA
Found at i:8648637 original size:17 final size:18
Alignment explanation
Indices: 8648617--8648652 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
8648607 TTGAATAATT
*
8648617 TGGAT-ATTTTATTTAAA
1 TGGATCATTTTATTGAAA
8648634 TGGATCATTTTATTGAAA
1 TGGATCATTTTATTGAAA
8648652 T
1 T
8648653 TTTTTTAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.33, C:0.03, G:0.14, T:0.50
Consensus pattern (18 bp):
TGGATCATTTTATTGAAA
Found at i:8657261 original size:19 final size:19
Alignment explanation
Indices: 8657220--8657271 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
8657210 TTAAAAAATT
*
8657220 TAAAAT-TATTAAAACAAA
1 TAAAATATATAAAAACAAA
*
8657238 TAAAATATGTAAAAACTAAA
1 TAAAATATATAAAAAC-AAA
8657258 -AAAATATATAAAAA
1 TAAAATATATAAAAA
8657272 AATTTATAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
18 6 0.21
19 20 0.69
20 3 0.10
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.25
Consensus pattern (19 bp):
TAAAATATATAAAAACAAA
Found at i:8657279 original size:14 final size:12
Alignment explanation
Indices: 8657254--8657287 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
8657244 ATGTAAAAAC
8657254 TAAAAAAATATA
1 TAAAAAAATATA
*
8657266 TAAAAAAATTTA
1 TAAAAAAATATA
*
8657278 TAAAAGAATA
1 TAAAAAAATA
8657288 AAAAAAATCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (12 bp):
TAAAAAAATATA
Found at i:8659977 original size:27 final size:26
Alignment explanation
Indices: 8659916--8659980 Score: 69
Period size: 29 Copynumber: 2.3 Consensus size: 26
8659906 AGATGCTTAC
*
8659916 ATATAAAATGTTAATTTACATAAAAAA
1 ATATAAAATGTTAA-TTAAATAAAAAA
8659943 ATGAATAAAATGTTAA-TAAATAAAAAAGA
1 AT--ATAAAATGTTAATTAAAT-AAAAA-A
8659972 ATATAAAAT
1 ATATAAAAT
8659981 TAGTAAATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
27 13 0.39
28 5 0.15
29 15 0.45
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29
Consensus pattern (26 bp):
ATATAAAATGTTAATTAAATAAAAAA
Found at i:8671404 original size:20 final size:19
Alignment explanation
Indices: 8671366--8671404 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
8671356 TAAGAAATTG
*
8671366 AATTTTTTAATATTTTTTT
1 AATTTTTTAATATTATTTT
*
8671385 AATTTATTTCATATTATTTT
1 AATTT-TTTAATATTATTTT
8671405 TATAATATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (19 bp):
AATTTTTTAATATTATTTT
Found at i:8671734 original size:23 final size:23
Alignment explanation
Indices: 8671708--8671753 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
8671698 ATAGAAAACT
8671708 GAAATAAAAACTACAATTGAAAG
1 GAAATAAAAACTACAATTGAAAG
** *
8671731 GAAATCTAAATTACAATTGAAAG
1 GAAATAAAAACTACAATTGAAAG
8671754 TAAAATTAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.57, C:0.09, G:0.13, T:0.22
Consensus pattern (23 bp):
GAAATAAAAACTACAATTGAAAG
Found at i:8674401 original size:40 final size:40
Alignment explanation
Indices: 8674319--8674402 Score: 107
Period size: 41 Copynumber: 2.1 Consensus size: 40
8674309 TTAGCATTTT
**
8674319 AATTGATTTTTTAAAATTTTAAAAATTCAAAAAAATTTCAA
1 AATTGATTTTTTAAAA-TTTAAAAATTCAAAAAAATGACAA
* *
8674360 AATTTATTTTTTAAAA-TTAAAAATTATAAAAAAATGACAA
1 AATTGATTTTTTAAAATTTAAAAATT-CAAAAAAATGACAA
8674400 AAT
1 AAT
8674403 AATTAAATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
39 9 0.24
40 14 0.37
41 15 0.39
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (40 bp):
AATTGATTTTTTAAAATTTAAAAATTCAAAAAAATGACAA
Found at i:8678910 original size:24 final size:24
Alignment explanation
Indices: 8678878--8678923 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
8678868 TAGCATAGAG
8678878 ATCCCCCAAATACCACAAAACCAT
1 ATCCCCCAAATACCACAAAACCAT
*
8678902 ATCCCCCAAATACTACAAAACC
1 ATCCCCCAAATACCACAAAACC
8678924 CAATTCGCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.46, C:0.41, G:0.00, T:0.13
Consensus pattern (24 bp):
ATCCCCCAAATACCACAAAACCAT
Found at i:8681013 original size:389 final size:389
Alignment explanation
Indices: 8680319--8681868 Score: 2722
Period size: 389 Copynumber: 4.0 Consensus size: 389
8680309 GTAAACATAG
8680319 CCACGGGTCGTCCGTCTTTATGATGAATGACTTGATCACTATTTAATAGTGATTGATTTTTAATG
1 CCACGGGTCGTCCGTCTTTATGATGAATGACTTGATCACTATTTAATAGTGATTGATTTTTAATG
*
8680384 AAGGAAGATGTAATGGTTACCATGAGATAAAATAGGATCATATTGGGAGAACTGATATTATCCCA
66 AAGGAAGATGTAATGGTTACCATGAGAT-AAATAAGATCATATTGGGAGAACTGATATTATCCCA
8680449 AAAAGATCAATGATACCTTATGAGGGTAACACACTTATGACAAGGTCATTGGACGAACTCTGAGT
130 AAAAGATCAATGATACCTTATGAGGGTAACACACTTATGACAAGGTCATTGGACGAACTCTGAGT
* *
8680514 AGTTGCTTACGTAATGGTATGTCGTTGGGGAGAGCTCAGTCACGATACTACAGTGGAGTGACTTT
195 AGTTGCTTTCGTAATGGTATGTCGTTGGGGAGAGCTCAGTCACGATACTACAGTGGAATGACTTT
* *
8680579 GTGACTAAATGAGTTTATTATTAATAGGCGAAAAGCTGGAACTTAATTACAAACCATTTGAGCCT
260 GTGACTAAATGAGTTTATTATTAATAGACGAAAAGCTGAAACTTAATTACAAACCATTTGAGCCT
* * * * *
8680644 CAACTACATATATCCAATCGGTCCCTCCGCTAACTCATTAAAACCATAAATGAATTGTAAAGTAG
325 CAACTACATATATCCAATCGGTCCCTCCGCTAGCTCATTGAAACTATAAATGAATTGTAACGTAA
* *
8680709 CCACCGGTCGTCCGTCTTTTTGATGAATGACTTGATCACTATTTAATAGTGATTGATTTTTAATG
1 CCACGGGTCGTCCGTCTTTATGATGAATGACTTGATCACTATTTAATAGTGATTGATTTTTAATG
8680774 AAGGAAGATGTAATGGTTACCATGAGATAAATAAGATCATATTGGGAGAACTGATATTATCCCAA
66 AAGGAAGATGTAATGGTTACCATGAGATAAATAAGATCATATTGGGAGAACTGATATTATCCCAA
* *
8680839 AAAGATTAATGATACCTTATGAGGGTAACACACTTATGACAAGGTCATTGGATGAACTCTGAGTA
131 AAAGATCAATGATACCTTATGAGGGTAACACACTTATGACAAGGTCATTGGACGAACTCTGAGTA
* * *
8680904 GTTTCTTTCGTAATGGTATGTCGTTGGGGAGAGTTCAGTCACGATACTACAGTGAAATGACTTTG
196 GTTGCTTTCGTAATGGTATGTCGTTGGGGAGAGCTCAGTCACGATACTACAGTGGAATGACTTTG
* * *
8680969 TGACTAAATGAGTTTATTATTAATAGACGAAAAGTTGAAACTTAATTACAAACCATTTGAACTTC
261 TGACTAAATGAGTTTATTATTAATAGACGAAAAGCTGAAACTTAATTACAAACCATTTGAGCCTC
*
8681034 AACTACATATATCCAATCGGTCCCTCCGCTAGCTCATTGAAACTATCAATGAATTGTAACGTAA
326 AACTACATATATCCAATCGGTCCCTCCGCTAGCTCATTGAAACTATAAATGAATTGTAACGTAA
8681098 CCACGGGTCGTCCGTCTTTATGATGAATGACTTGATCACTATTTAATAGTGATTGATTTTTAATG
1 CCACGGGTCGTCCGTCTTTATGATGAATGACTTGATCACTATTTAATAGTGATTGATTTTTAATG
*
8681163 AAGGAAGATGTAATGGTTACCATGAGATAAATAAGATTATATTGGGAGAACTGATATTATCCCAA
66 AAGGAAGATGTAATGGTTACCATGAGATAAATAAGATCATATTGGGAGAACTGATATTATCCCAA
* **
8681228 AAAGATCAATGATACCTTATGAGGGTAACACACTTATGACAAGGTTATTGGTTGAACTCTGAGTA
131 AAAGATCAATGATACCTTATGAGGGTAACACACTTATGACAAGGTCATTGGACGAACTCTGAGTA
*
8681293 GTTGCTTTCGTAATGGTATGTCGTTGGGGAGAGTTCAGTCACGATACTACAGTGGAATGACTTTG
196 GTTGCTTTCGTAATGGTATGTCGTTGGGGAGAGCTCAGTCACGATACTACAGTGGAATGACTTTG
*
8681358 TGACTAAATGAGTTTATTATTAATAAACGAAAAGCTGAAACTTAATTACAAACCATTTGAGCCTC
261 TGACTAAATGAGTTTATTATTAATAGACGAAAAGCTGAAACTTAATTACAAACCATTTGAGCCTC
* *
8681423 AACTACATATATCCAATCGGTCCCTCAGCTAGCTCATTGAAACTATCAATGAATTGTAACGTAA
326 AACTACATATATCCAATCGGTCCCTCCGCTAGCTCATTGAAACTATAAATGAATTGTAACGTAA
*
8681487 CCACGGGTCGTCCATCTTTATGATGAATGACTTGATCACTATTTAATAGTGATTGATTTTTAATG
1 CCACGGGTCGTCCGTCTTTATGATGAATGACTTGATCACTATTTAATAGTGATTGATTTTTAATG
* * *
8681552 AAGGAAGATGTAATGGTGACCATGAGATAAATAGGATCATATTGGAAGAACTGATATTATCCCAA
66 AAGGAAGATGTAATGGTTACCATGAGATAAATAAGATCATATTGGGAGAACTGATATTATCCCAA
* *
8681617 AAAGATCAATGATACCTTATGAGGGTAACACACTTATGACAAAGTCATTGGACAAACTCTGAGTA
131 AAAGATCAATGATACCTTATGAGGGTAACACACTTATGACAAGGTCATTGGACGAACTCTGAGTA
* * *
8681682 GTTGCTTTCGTAATGGTATATCATTGGGGAGAGCTCAATCACGATACTACAGTGGAATGACTTTG
196 GTTGCTTTCGTAATGGTATGTCGTTGGGGAGAGCTCAGTCACGATACTACAGTGGAATGACTTTG
* * *
8681747 TGACTAAATGAGTTTATTATTAATAGGCAAAAAGCTGGAACTTAATTACAAACCATTTGAGCCTC
261 TGACTAAATGAGTTTATTATTAATAGACGAAAAGCTGAAACTTAATTACAAACCATTTGAGCCTC
8681812 AACTACATATATCCAATCGGTCCCTCCGCTAGCTCATTGAAACTATAAATGAATTGT
326 AACTACATATATCCAATCGGTCCCTCCGCTAGCTCATTGAAACTATAAATGAATTGT
8681869 GTGTTTAAAT
Statistics
Matches: 1106, Mismatches: 54, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
389 1015 0.92
390 91 0.08
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.31
Consensus pattern (389 bp):
CCACGGGTCGTCCGTCTTTATGATGAATGACTTGATCACTATTTAATAGTGATTGATTTTTAATG
AAGGAAGATGTAATGGTTACCATGAGATAAATAAGATCATATTGGGAGAACTGATATTATCCCAA
AAAGATCAATGATACCTTATGAGGGTAACACACTTATGACAAGGTCATTGGACGAACTCTGAGTA
GTTGCTTTCGTAATGGTATGTCGTTGGGGAGAGCTCAGTCACGATACTACAGTGGAATGACTTTG
TGACTAAATGAGTTTATTATTAATAGACGAAAAGCTGAAACTTAATTACAAACCATTTGAGCCTC
AACTACATATATCCAATCGGTCCCTCCGCTAGCTCATTGAAACTATAAATGAATTGTAACGTAA
Found at i:8684468 original size:24 final size:24
Alignment explanation
Indices: 8684430--8684484 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
8684420 TACATGTTAT
* *
8684430 CAACATCATCTTTCAATTTAGCAC
1 CAACATCATCATTCAATCTAGCAC
* *
8684454 CAACATTATCATTCAATCTATCAC
1 CAACATCATCATTCAATCTAGCAC
8684478 CAACATC
1 CAACATC
8684485 CCAATTTCAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.36, C:0.31, G:0.02, T:0.31
Consensus pattern (24 bp):
CAACATCATCATTCAATCTAGCAC
Found at i:8684651 original size:19 final size:19
Alignment explanation
Indices: 8684627--8684665 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
8684617 AAGTAAGTAG
8684627 TAACCATTATTATCACATC
1 TAACCATTATTATCACATC
8684646 TAACCATTATTATCACATC
1 TAACCATTATTATCACATC
8684665 T
1 T
8684666 TTATAAAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.26, G:0.00, T:0.38
Consensus pattern (19 bp):
TAACCATTATTATCACATC
Found at i:8689262 original size:19 final size:19
Alignment explanation
Indices: 8689230--8689285 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
8689220 ATACAAATTT
8689230 TAAAAAA-TAAAAAATATA
1 TAAAAAATTAAAAAATATA
* *
8689248 T-CAATATTGAAAAAAT-TA
1 TAAAAAATT-AAAAAATATA
8689266 TAAAAAATTAAAAAATATA
1 TAAAAAATTAAAAAATATA
8689285 T
1 T
8689286 TAACTTTAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
17 3 0.10
18 12 0.40
19 15 0.50
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (19 bp):
TAAAAAATTAAAAAATATA
Found at i:8689272 original size:37 final size:36
Alignment explanation
Indices: 8689231--8689308 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 36
8689221 TACAAATTTT
*
8689231 AAAAAATAAAAAATATATCAA-TATTGAAAAAATTATA
1 AAAAAATAAAAAATATATCAACT-TT-AAAAAATTACA
* *
8689268 AAAAATTAAAAAATATATTAACTTTAAAAAATTACA
1 AAAAAATAAAAAATATATCAACTTTAAAAAATTACA
8689304 AAAAA
1 AAAAA
8689309 GCTTTTTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
36 15 0.41
37 21 0.57
38 1 0.03
ACGTcount: A:0.68, C:0.04, G:0.01, T:0.27
Consensus pattern (36 bp):
AAAAAATAAAAAATATATCAACTTTAAAAAATTACA
Found at i:8689297 original size:36 final size:36
Alignment explanation
Indices: 8689224--8689308 Score: 111
Period size: 36 Copynumber: 2.4 Consensus size: 36
8689214 TTATAAATAC
*
8689224 AAATTTTAAAAAATAAAAAATATATCAATATTGAAA
1 AAATTATAAAAAATAAAAAATATATCAATATTGAAA
*
8689260 AAATTATAAAAAATTAAAAAATATATTAACT-TT-AAA
1 AAATTATAAAAAA-TAAAAAATATATCAA-TATTGAAA
*
8689296 AAATTACAAAAAA
1 AAATTATAAAAAA
8689309 GCTTTTTTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
36 27 0.61
37 16 0.36
38 1 0.02
ACGTcount: A:0.66, C:0.04, G:0.01, T:0.29
Consensus pattern (36 bp):
AAATTATAAAAAATAAAAAATATATCAATATTGAAA
Found at i:8704551 original size:6 final size:6
Alignment explanation
Indices: 8704540--8704574 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
8704530 ATTGATATAA
* *
8704540 GAGTAG GAGTAG TAGTAG GAGTAG GAGTAG AAGTA
1 GAGTAG GAGTAG GAGTAG GAGTAG GAGTAG GAGTA
8704575 AAAGTAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.37, C:0.00, G:0.43, T:0.20
Consensus pattern (6 bp):
GAGTAG
Found at i:8704563 original size:18 final size:18
Alignment explanation
Indices: 8704540--8704574 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8704530 ATTGATATAA
*
8704540 GAGTAGGAGTAGTAGTAG
1 GAGTAGGAGTAGAAGTAG
8704558 GAGTAGGAGTAGAAGTA
1 GAGTAGGAGTAGAAGTA
8704575 AAAGTAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.43, T:0.20
Consensus pattern (18 bp):
GAGTAGGAGTAGAAGTAG
Found at i:8704580 original size:18 final size:18
Alignment explanation
Indices: 8704541--8704580 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
8704531 TTGATATAAG
* **
8704541 AGTAGGAGTAGTAGTAGG
1 AGTAGGAGTAGAAGTAAA
8704559 AGTAGGAGTAGAAGTAAA
1 AGTAGGAGTAGAAGTAAA
8704577 AGTA
1 AGTA
8704581 AAATTAGTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.38, T:0.20
Consensus pattern (18 bp):
AGTAGGAGTAGAAGTAAA
Found at i:8704827 original size:41 final size:41
Alignment explanation
Indices: 8704770--8704852 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
8704760 TTAACAAAAG
8704770 TAACAACTTACTCATTAATCTAATGCACAAAAATTAATTTA
1 TAACAACTTACTCATTAATCTAATGCACAAAAATTAATTTA
*
8704811 TAACAACTTACTCATTAATCTAATGTACAAAAATTAATTTA
1 TAACAACTTACTCATTAATCTAATGCACAAAAATTAATTTA
8704852 T
1 T
8704853 CTACTTTTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.46, C:0.16, G:0.02, T:0.36
Consensus pattern (41 bp):
TAACAACTTACTCATTAATCTAATGCACAAAAATTAATTTA
Found at i:8709152 original size:12 final size:12
Alignment explanation
Indices: 8709135--8709182 Score: 60
Period size: 12 Copynumber: 4.0 Consensus size: 12
8709125 ACAGGGAAAA
*
8709135 GATGATGACGAG
1 GATGATGACGAT
*
8709147 GATGATGATGAT
1 GATGATGACGAT
*
8709159 GATGAAGACGAT
1 GATGATGACGAT
*
8709171 GACGATGACGAT
1 GATGATGACGAT
8709183 AACTAAATTC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.35, C:0.08, G:0.35, T:0.21
Consensus pattern (12 bp):
GATGATGACGAT
Found at i:8710963 original size:20 final size:20
Alignment explanation
Indices: 8710938--8710977 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
8710928 AATGAATAAA
8710938 TTAATCTATATAAATTATAC
1 TTAATCTATATAAATTATAC
8710958 TTAATCTATATAAATTATAC
1 TTAATCTATATAAATTATAC
8710978 AGAGAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.10, G:0.00, T:0.45
Consensus pattern (20 bp):
TTAATCTATATAAATTATAC
Found at i:8712303 original size:21 final size:20
Alignment explanation
Indices: 8712279--8712339 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
8712269 TCAGAAAAAA
*
8712279 AAATTACACCAATAATTTTAT
1 AAATTACA-AAATAATTTTAT
* *
8712300 AAATTGCAAAATAATTTTAA
1 AAATTACAAAATAATTTTAT
*
8712320 AAAAT-CAAAAT-A-TTTAT
1 AAATTACAAAATAATTTTAT
8712337 AAA
1 AAA
8712340 AATTCTAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
17 7 0.20
18 1 0.03
19 6 0.17
20 14 0.40
21 7 0.20
ACGTcount: A:0.56, C:0.08, G:0.02, T:0.34
Consensus pattern (20 bp):
AAATTACAAAATAATTTTAT
Found at i:8712330 original size:19 final size:20
Alignment explanation
Indices: 8712289--8712341 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
8712279 AAATTACACC
* *
8712289 AATAATTTTATAAATTGCAA
1 AATAATTTTAAAAAATGCAA
8712309 AATAATTTTAAAAAAT-CAA
1 AATAATTTTAAAAAATGCAA
8712328 AAT-ATTTATAAAAA
1 AATAATTT-TAAAAA
8712342 TTCTAAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
18 4 0.13
19 12 0.40
20 14 0.47
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (20 bp):
AATAATTTTAAAAAATGCAA
Found at i:8712342 original size:18 final size:19
Alignment explanation
Indices: 8712300--8712355 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
8712290 ATAATTTTAT
8712300 AAATTGCAAAATAATTT-TAA
1 AAATT-CAAAAT-ATTTATAA
*
8712320 AAAATCAAAATATTTATAA
1 AAATTCAAAATATTTATAA
*
8712339 AAATTCTAAA-ATTTATA
1 AAATTCAAAATATTTATA
8712356 TTTTTAACAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 11 0.34
19 17 0.53
20 4 0.12
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (19 bp):
AAATTCAAAATATTTATAA
Found at i:8712430 original size:12 final size:12
Alignment explanation
Indices: 8712408--8712456 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
8712398 GTTAAAAATT
8712408 AAAAAAT-CTAA
1 AAAAAATCCTAA
*
8712419 AAAAAACCCTAA
1 AAAAAATCCTAA
*
8712431 AACAAAATCCTTA
1 AA-AAAATCCTAA
*
8712444 ACAAAATCCTAA
1 AAAAAATCCTAA
8712456 A
1 A
8712457 CTGATCGAGG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
11 6 0.19
12 16 0.52
13 9 0.29
ACGTcount: A:0.63, C:0.20, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAAAATCCTAA
Found at i:8714045 original size:25 final size:25
Alignment explanation
Indices: 8714015--8714151 Score: 213
Period size: 25 Copynumber: 5.5 Consensus size: 25
8714005 CAAATAACAA
8714015 GCCACAAAGGCTTTCTAGAGAATTC
1 GCCACAAAGGCTTTCTAGAGAATTC
*
8714040 ACCACAAAGGCTTTCTAGAGAATTC
1 GCCACAAAGGCTTTCTAGAGAATTC
8714065 GCCACAAAGGCTTTCTAGAGAATTC
1 GCCACAAAGGCTTTCTAGAGAATTC
*
8714090 GCCACATAGGCTTTCTAGAGAATTC
1 GCCACAAAGGCTTTCTAGAGAATTC
* *
8714115 GCCACAAAGGCTTT-TCAAAGGATTC
1 GCCACAAAGGCTTTCT-AGAGAATTC
*
8714140 GCTACAAAGGCT
1 GCCACAAAGGCT
8714152 CTCCATGAAA
Statistics
Matches: 104, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
24 1 0.01
25 103 0.99
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (25 bp):
GCCACAAAGGCTTTCTAGAGAATTC
Found at i:8717823 original size:40 final size:40
Alignment explanation
Indices: 8717758--8717863 Score: 124
Period size: 40 Copynumber: 2.6 Consensus size: 40
8717748 ATCCAATGTT
* * *
8717758 CCATTTCATATATC-TATTTCCATATACCCAATTCATATAA
1 CCATTTCATATATCAT-TTTTCATATAACCAAGTCATATAA
** * * *
8717798 TTATTTCATATATCATTTTTTATATAACCGAGTCATATGA
1 CCATTTCATATATCATTTTTCATATAACCAAGTCATATAA
8717838 CCATTTCATATATCATTTTTCATATA
1 CCATTTCATATATCATTTTTCATATA
8717864 TTATTTTTTC
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
40 53 0.98
41 1 0.02
ACGTcount: A:0.33, C:0.19, G:0.03, T:0.45
Consensus pattern (40 bp):
CCATTTCATATATCATTTTTCATATAACCAAGTCATATAA
Found at i:8717874 original size:15 final size:14
Alignment explanation
Indices: 8717841--8717871 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8717831 CATATGACCA
8717841 TTTCATATATCATT
1 TTTCATATATCATT
*
8717855 TTTCATATATTATT
1 TTTCATATATCATT
8717869 TTT
1 TTT
8717872 TCACCTAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.26, C:0.10, G:0.00, T:0.65
Consensus pattern (14 bp):
TTTCATATATCATT
Found at i:8726592 original size:24 final size:25
Alignment explanation
Indices: 8726533--8726603 Score: 108
Period size: 24 Copynumber: 2.9 Consensus size: 25
8726523 AAGCAGGCCC
*
8726533 ATATTCATAGCTCATGTGAGCACTT
1 ATATTCACAGCTCATGTGAGCACTT
* *
8726558 ACATTCACAGCTCGTGTGAGCA-TT
1 ATATTCACAGCTCATGTGAGCACTT
8726582 ATATTCACAGCTCATGTGAGCA
1 ATATTCACAGCTCATGTGAGCA
8726604 AATTTTATCC
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
24 22 0.54
25 19 0.46
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (25 bp):
ATATTCACAGCTCATGTGAGCACTT
Found at i:8729062 original size:19 final size:20
Alignment explanation
Indices: 8729030--8729067 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
8729020 TCATCATGTT
8729030 TATGTTGATAATTACGATTG
1 TATGTTGATAATTACGATTG
* *
8729050 TATG-TGATTATTATGATT
1 TATGTTGATAATTACGATT
8729068 TAATGTCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.29, C:0.03, G:0.18, T:0.50
Consensus pattern (20 bp):
TATGTTGATAATTACGATTG
Found at i:8730558 original size:18 final size:19
Alignment explanation
Indices: 8730531--8730579 Score: 62
Period size: 19 Copynumber: 2.4 Consensus size: 19
8730521 GTATGAACAA
8730531 ATTAATTAATCTAATAATATAT
1 ATTAATTAAT-TAAT-AT-TAT
8730553 ATTAATTAATTAATATTAT
1 ATTAATTAATTAATATTAT
*
8730572 ATTTATTA
1 ATTAATTA
8730580 TCATCATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 10 0.38
20 2 0.08
21 4 0.15
22 10 0.38
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (19 bp):
ATTAATTAATTAATATTAT
Found at i:8730607 original size:36 final size:32
Alignment explanation
Indices: 8730549--8730632 Score: 80
Period size: 36 Copynumber: 2.5 Consensus size: 32
8730539 ATCTAATAAT
* *
8730549 ATATATTAAT-TAATTAATATTATATTTATTATCA
1 ATATAATAATATAA-TAA-ATTAT-TTTAATATCA
8730583 TCATATAATAATACTAATAAATTATTTTAATATCA
1 --ATATAATAATA-TAATAAATTATTTTAATATCA
*
8730618 ATTTAATAATATAAT
1 ATATAATAATATAAT
8730633 TAACAATAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
32 4 0.09
33 10 0.23
35 9 0.21
36 14 0.33
37 3 0.07
38 3 0.07
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (32 bp):
ATATAATAATATAATAAATTATTTTAATATCA
Found at i:8730774 original size:14 final size:14
Alignment explanation
Indices: 8730738--8730781 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
8730728 GTTTTAATAC
*
8730738 TTTTTTGCTTTCTTT
1 TTTTTTACTTT-TTT
*
8730753 TTACTTTACTTTTTT
1 TT-TTTTACTTTTTT
8730768 TTTTTTACTTTTTT
1 TTTTTTACTTTTTT
8730782 AAAATTTTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
14 11 0.44
15 7 0.28
16 7 0.28
ACGTcount: A:0.07, C:0.11, G:0.02, T:0.80
Consensus pattern (14 bp):
TTTTTTACTTTTTT
Found at i:8732520 original size:22 final size:23
Alignment explanation
Indices: 8732482--8732528 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
8732472 GTTCTTGTAC
8732482 TTTTATTTTATAAA-TTTAAAAT
1 TTTTATTTTATAAATTTTAAAAT
*
8732504 TTTTATTTT-TCATATTTTAAAAT
1 TTTTATTTTAT-AAATTTTAAAAT
8732527 TT
1 TT
8732529 AGGTCCAACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 1 0.05
22 11 0.50
23 10 0.45
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (23 bp):
TTTTATTTTATAAATTTTAAAAT
Found at i:8733865 original size:30 final size:30
Alignment explanation
Indices: 8733822--8733881 Score: 79
Period size: 28 Copynumber: 2.0 Consensus size: 30
8733812 AAAAAGTAAT
*
8733822 GGGGTTAAAAGTGTGAATATTTAAAA-GTTGA
1 GGGGTTAAAAGTGT-AA-ATTCAAAAGGTTGA
8733853 GGGGTT-AAAGTGTAAATTCAAAAGGTTGA
1 GGGGTTAAAAGTGTAAATTCAAAAGGTTGA
8733882 AAGACTAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
28 7 0.26
29 7 0.26
30 7 0.26
31 6 0.22
ACGTcount: A:0.38, C:0.02, G:0.30, T:0.30
Consensus pattern (30 bp):
GGGGTTAAAAGTGTAAATTCAAAAGGTTGA
Found at i:8735466 original size:132 final size:132
Alignment explanation
Indices: 8735070--8735478 Score: 422
Period size: 132 Copynumber: 3.1 Consensus size: 132
8735060 CTTATTTTTT
* * * *
8735070 AGAGTTTTTAAGAAACATGAGG-GAAATTCCAAAGGGGATGTTCGATTATTTGGAACCAACAGGA
1 AGAGTTTTTAA-AAACATG-GGTGAAATT-CAAAAGGGATATTCGATTATTTTGAACAAAC-GGA
* * * * * * ** *
8735134 AATTGCAACCCAACATGATAGGGCACGATTCCCCAAATTTCCAAACATCGAATATTACCCTCGTT
62 AATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAATATCGAATATCGCCTTCGTT
8735199 TT--GG
127 TTAAGG
** **
8735203 AGAGTTTTTAGAAAACATAAGTGAAATTCAAAAGGGACCTTCGATTATTTTGAACAAACGAGAAA
1 AGAGTTTTTA-AAAACATGGGTGAAATTCAAAAGGGATATTCGATTATTTTGAACAAACG-GAAA
* * *
8735268 TTGTC-ACCCAACACGTTAGGGCAC-AATCCAGCGAATTGCCAAATATCGAATATCGCCTCCGCT
64 TTG-CAACCCAACACGTTAGGGCACGATTCC-GCGAATTGCCAAATATCGAATATCGCCTTCGTT
8735331 TTAAGG
127 TTAAGG
* * *
8735337 -G-GTTTTTAAAAGACATGGGTGAAATTCTAAAGGGATATTCGATCATTTTGAGCAAACGCGAAA
1 AGAGTTTTTAAAA-ACATGGGTGAAATTCAAAAGGGATATTCGATTATTTTGAACAAACG-GAAA
* * *
8735400 TTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAATATCAAATCTCGTCTTCGTTTT
64 TTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAATATCGAATATCGCCTTCGTTTT
8735465 AA--
129 AAGG
*
8735467 AGAATTTTTAAA
1 AGAGTTTTTAAA
8735479 TGAATAATTA
Statistics
Matches: 230, Mismatches: 34, Indels: 25
0.80 0.12 0.09
Matches are distributed among these distances:
131 10 0.04
132 189 0.82
133 28 0.12
134 3 0.01
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (132 bp):
AGAGTTTTTAAAAACATGGGTGAAATTCAAAAGGGATATTCGATTATTTTGAACAAACGGAAATT
GCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAATATCGAATATCGCCTTCGTTTTAA
GG
Found at i:8738408 original size:45 final size:45
Alignment explanation
Indices: 8738330--8738674 Score: 184
Period size: 45 Copynumber: 7.8 Consensus size: 45
8738320 GGCTTGCTTA
* *
8738330 AATCTGCTTCACTGCAACTTCA-GGAAACCAAGATTTGTCGTCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGA-CAAGATTTGTCGTCTTC
* * * * *
8738375 AATTTGCTCCACTACAACTTCAGGGAGACAAGATCT-ACAATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGACAAGATTTGTC-GTCTTC
** * * * * ** * * *
8738420 AGCCTACTCCACTACAACTTTAGGGAG-CTAGGGTGGT-GGCTTA
1 AATCTGCTCCACTGCAACTTCAGGGAGACAAGATTTGTCGTCTTC
* * * * * *
8738463 AATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCTTCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGACAAGATTTGTCGTCTTC
* * * * * * *
8738508 GATTTGCCCCACTTCAACTTCAGGGAGACAAGATCT-ACAATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGACAAGATTTGTC-GTCTTC
** * * * * * * *
8738553 AGCCTACTCCACTACAACTTTAGGGAG-CTAGGA-TGGT-GGCTTA
1 AATCTGCTCCACTGCAACTTCAGGGAGAC-AAGATTTGTCGTCTTC
* * * *
8738596 AATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGACAAGATTTGTCGTCTTC
* *
8738641 AATTTGCCCCACTGCAACTTCAGGGAGACAAGAT
1 AATCTGCTCCACTGCAACTTCAGGGAGACAAGAT
8738675 CTACAATATT
Statistics
Matches: 211, Mismatches: 78, Indels: 22
0.68 0.25 0.07
Matches are distributed among these distances:
43 49 0.23
44 16 0.08
45 142 0.67
46 4 0.02
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (45 bp):
AATCTGCTCCACTGCAACTTCAGGGAGACAAGATTTGTCGTCTTC
Done.