Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 260 of 290
Found at i:83874054 original size:26 final size:26
Alignment explanation
Indices: 83874018--83874101 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
83874008 CATGAAATTC
83874018 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
83874044 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
83874070 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
83874096 TTATCA
1 TTATCA
83874102 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:83875532 original size:63 final size:63
Alignment explanation
Indices: 83875449--83875575 Score: 218
Period size: 63 Copynumber: 2.0 Consensus size: 63
83875439 ACGATTCACT
* *
83875449 GTCTGAATTAAGTAAGAAATTATCAATAGGCTCAATGGTTAAGTGTTAGTGCTTATTCCTAGA
1 GTCTAAATTAAGTAAGAAATTATCAATAGGCTCAATGGTTAAGTGTTAGTGCTCATTCCTAGA
* *
83875512 GTCTAAATTAAGTAAGAAATTATCAATAGGCTCACTGGTTAAGTGTTAGTGCTCCTTCCTAGA
1 GTCTAAATTAAGTAAGAAATTATCAATAGGCTCAATGGTTAAGTGTTAGTGCTCATTCCTAGA
83875575 G
1 G
83875576 ATCCTAGGTT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.34
Consensus pattern (63 bp):
GTCTAAATTAAGTAAGAAATTATCAATAGGCTCAATGGTTAAGTGTTAGTGCTCATTCCTAGA
Found at i:83875846 original size:12 final size:11
Alignment explanation
Indices: 83875818--83875860 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 11
83875808 TTTCTCTCCA
83875818 TCTTCTTTTTC
1 TCTTCTTTTTC
*
83875829 TTTTCTTTTTGC
1 TCTTCTTTTT-C
83875841 TCTTCTTTTCTC
1 TCTTCTTTT-TC
83875853 TCATTCTT
1 TC-TTCTT
83875861 GCACCTATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 9 0.33
12 12 0.44
13 6 0.22
ACGTcount: A:0.02, C:0.26, G:0.02, T:0.70
Consensus pattern (11 bp):
TCTTCTTTTTC
Found at i:83876766 original size:38 final size:35
Alignment explanation
Indices: 83876680--83876773 Score: 107
Period size: 38 Copynumber: 2.6 Consensus size: 35
83876670 TTATCGCTCT
* *
83876680 ACTAAGTACATGTTAAACATGTCTACTACTGTTGA
1 ACTAAGTACATGTTAAGCATGTCTACTACGGTTGA
* * *
83876715 ACTGAGTATATGTTTAGCATGTCTACTATTACGGTTGA
1 ACTAAGTACATGTTAAGCATGTCTAC---TACGGTTGA
*
83876753 ACTAAATACATGTTAAGCATG
1 ACTAAGTACATGTTAAGCATG
83876774 ACTATTGTTT
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
35 22 0.47
38 25 0.53
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (35 bp):
ACTAAGTACATGTTAAGCATGTCTACTACGGTTGA
Found at i:83879817 original size:34 final size:34
Alignment explanation
Indices: 83879774--83879843 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
83879764 AATTATTAAT
83879774 TTATTGGGTTTGCTTCTTTAGGCAAGGAAGAACC
1 TTATTGGGTTTGCTTCTTTAGGCAAGGAAGAACC
83879808 TTATTGGGTTTGCTTCTTTAGGCAAGGAAGAACC
1 TTATTGGGTTTGCTTCTTTAGGCAAGGAAGAACC
83879842 TT
1 TT
83879844 TCTATGAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.23, C:0.14, G:0.26, T:0.37
Consensus pattern (34 bp):
TTATTGGGTTTGCTTCTTTAGGCAAGGAAGAACC
Found at i:83881883 original size:92 final size:93
Alignment explanation
Indices: 83881748--83881932 Score: 327
Period size: 92 Copynumber: 2.0 Consensus size: 93
83881738 AGCAATACTT
* *
83881748 TTCTTAGCCTTTATTTACTTTTGTTAGGATTGAGCTCTGATTAGAGATTTTGTTTTGGGTTTAAT
1 TTCTTAGCCTTTATTTACTTTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAAT
83881813 TGTTGATTCATCTTTTTTCTATTATTTC
66 TGTTGATTCATCTTTTTTCTATTATTTC
*
83881841 TTCTTCGCCTTTATTTAC-TTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAAT
1 TTCTTAGCCTTTATTTACTTTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAAT
*
83881905 TGTTTATTCATCTTTTTTCTATTATTTC
66 TGTTGATTCATCTTTTTTCTATTATTTC
83881933 CTGGCAGCTC
Statistics
Matches: 88, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 71 0.81
93 17 0.19
ACGTcount: A:0.18, C:0.11, G:0.15, T:0.56
Consensus pattern (93 bp):
TTCTTAGCCTTTATTTACTTTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAAT
TGTTGATTCATCTTTTTTCTATTATTTC
Found at i:83882404 original size:25 final size:25
Alignment explanation
Indices: 83882370--83882419 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
83882360 AAGGTTAATG
83882370 CTATTTGTCAATTCCCATTCAACAT
1 CTATTTGTCAATTCCCATTCAACAT
83882395 CTATTTGTCAATTCCCATTCAACAT
1 CTATTTGTCAATTCCCATTCAACAT
83882420 TCTCACTCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.04, T:0.40
Consensus pattern (25 bp):
CTATTTGTCAATTCCCATTCAACAT
Found at i:83883702 original size:20 final size:20
Alignment explanation
Indices: 83883665--83883702 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
83883655 TGATGGGGAG
*
83883665 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
83883685 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
83883703 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:83885652 original size:46 final size:46
Alignment explanation
Indices: 83885600--83885873 Score: 397
Period size: 46 Copynumber: 6.0 Consensus size: 46
83885590 AGTGTGCTCT
*
83885600 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
83885646 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
83885692 CTAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
83885738 CTGATATGAAATATATAAGACCATAGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ***
83885784 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
83885830 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
83885874 TCATGTCAAA
Statistics
Matches: 209, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.00
46 208 1.00
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:83886900 original size:18 final size:18
Alignment explanation
Indices: 83886877--83886919 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
83886867 ATAATTGAAA
83886877 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
83886895 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
*
83886913 ATGTAAA
1 ATATAAA
83886920 AATAGCTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
ATATAAATTTATTAATAT
Found at i:83887024 original size:14 final size:14
Alignment explanation
Indices: 83887005--83887042 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
83886995 CCAGAAAAGT
83887005 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
83887019 AAATCATTTTCCGG
1 AAATCATTTTCCAG
*
83887033 AAAACATTTT
1 AAATCATTTT
83887043 ATTGGCAAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.37, C:0.18, G:0.08, T:0.37
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:83889341 original size:19 final size:19
Alignment explanation
Indices: 83889294--83889341 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
83889284 CCACGCCAAC
*
83889294 AATTAATTAAATTTTTTAAA
1 AATT-ATTAAATTTTTAAAA
*
83889314 ATTTA-TAAATTTTTAAAA
1 AATTATTAAATTTTTAAAA
83889332 AATTATTAAA
1 AATTATTAAA
83889342 ATTATGTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 16 0.67
19 5 0.21
20 3 0.12
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
AATTATTAAATTTTTAAAA
Found at i:83900329 original size:2 final size:2
Alignment explanation
Indices: 83900322--83900347 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
83900312 AGACAGACAC
83900322 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
83900348 GGTGATCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:83907015 original size:22 final size:22
Alignment explanation
Indices: 83906990--83907033 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
83906980 TTTTTAAAAT
83906990 TTTAAA-AATTTAAAAATATATA
1 TTTAAATAATTTAAAAAT-TATA
*
83907012 TTTAAATTATTTAAAAATTATA
1 TTTAAATAATTTAAAAATTATA
83907034 AAAAATGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
TTTAAATAATTTAAAAATTATA
Found at i:83907028 original size:31 final size:30
Alignment explanation
Indices: 83906974--83907037 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 30
83906964 TTTGGCACTT
*
83906974 AAATAATTTTTAAAATTTTAAAAATT-TAA
1 AAATAATATTTAAAATTTTAAAAATTATAA
*
83907003 AAATATATATTTAAATTATTTAAAAATTATAA
1 AAATA-ATATTTAAAAT-TTTAAAAATTATAA
83907035 AAA
1 AAA
83907038 ATGTTTTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
29 5 0.17
30 9 0.30
31 10 0.33
32 6 0.20
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (30 bp):
AAATAATATTTAAAATTTTAAAAATTATAA
Found at i:83907942 original size:12 final size:13
Alignment explanation
Indices: 83907920--83907948 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
83907910 ATTTATTTTA
83907920 TGTTGTTTTAAAT
1 TGTTGTTTTAAAT
83907933 TGTT-TTTTAAAT
1 TGTTGTTTTAAAT
83907945 TGTT
1 TGTT
83907949 AAATCGTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.21, C:0.00, G:0.14, T:0.66
Consensus pattern (13 bp):
TGTTGTTTTAAAT
Found at i:83909005 original size:20 final size:18
Alignment explanation
Indices: 83908957--83909012 Score: 58
Period size: 20 Copynumber: 2.9 Consensus size: 18
83908947 AACTAAAATA
*
83908957 TTAAAATAAAAATAATTTAT
1 TTAAAATAAAAAT--TATAT
*
83908977 TTAAAATAAAATTTATAT
1 TTAAAATAAAAATTATAT
83908995 TTAACATATAAAAATTAT
1 TTAA-A-ATAAAAATTAT
83909013 GAAAAAAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
18 8 0.26
19 1 0.03
20 22 0.71
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (18 bp):
TTAAAATAAAAATTATAT
Found at i:83909566 original size:24 final size:24
Alignment explanation
Indices: 83909518--83909567 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
83909508 ATGATATATA
* *
83909518 TATTTTTTATTTTATATGTTCAAT
1 TATTTTTAATTTTATATATTCAAT
* *
83909542 TATTTTTAATTTTATTTATTTAAT
1 TATTTTTAATTTTATATATTCAAT
83909566 TA
1 TA
83909568 ATTGTTTTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (24 bp):
TATTTTTAATTTTATATATTCAAT
Found at i:83911268 original size:3 final size:3
Alignment explanation
Indices: 83911260--83911292 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
83911250 TGATTCACCA
83911260 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
83911293 GATGGGAAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:83912999 original size:14 final size:15
Alignment explanation
Indices: 83912975--83913011 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
83912965 ATATTATTGA
83912975 AAATA-TTTAAT-AT
1 AAATATTTTAATAAT
*
83912988 TAATATTTTAATAAT
1 AAATATTTTAATAAT
83913003 AAATATTTT
1 AAATATTTT
83913012 GTAGTATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
13 4 0.20
14 6 0.30
15 10 0.50
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
AAATATTTTAATAAT
Found at i:83916973 original size:14 final size:14
Alignment explanation
Indices: 83916938--83916984 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
83916928 ACAAATACCA
*
83916938 CTTTTTT-TCCTTT
1 CTTTTTTCTCTTTT
83916951 CTTTCTTTCTCTTTT
1 CTTT-TTTCTCTTTT
83916966 CTTTTTTCT-TTTT
1 CTTTTTTCTCTTTT
83916979 CCTTTT
1 -CTTTT
83916985 AGCAAGAGAC
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
13 8 0.27
14 13 0.43
15 9 0.30
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (14 bp):
CTTTTTTCTCTTTT
Found at i:83918025 original size:18 final size:19
Alignment explanation
Indices: 83918002--83918037 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
83917992 TTACATGCCA
83918002 AAGTG-AAAAGTGATTTTT
1 AAGTGAAAAAGTGATTTTT
83918020 AAGTGAAAAAGTGATTTT
1 AAGTGAAAAAGTGATTTT
83918038 GTGACTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.42, C:0.00, G:0.22, T:0.36
Consensus pattern (19 bp):
AAGTGAAAAAGTGATTTTT
Found at i:83919039 original size:12 final size:12
Alignment explanation
Indices: 83918980--83919040 Score: 68
Period size: 12 Copynumber: 5.0 Consensus size: 12
83918970 ATATGCACAG
*
83918980 TCAGATACAAAT
1 TCAGATTCAAAT
* *
83918992 ACAGATTCAATT
1 TCAGATTCAAAT
*
83919004 TCAGATTCAGAT
1 TCAGATTCAAAT
*
83919016 TCAGATAACAAAT
1 TCAGAT-TCAAAT
83919029 TCAGATTCAAAT
1 TCAGATTCAAAT
83919041 ATGCAAAATC
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
12 29 0.74
13 10 0.26
ACGTcount: A:0.44, C:0.16, G:0.10, T:0.30
Consensus pattern (12 bp):
TCAGATTCAAAT
Found at i:83920886 original size:14 final size:14
Alignment explanation
Indices: 83920850--83920888 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
83920840 TTGTTTCACT
*
83920850 GAAAATGACTTCTA
1 GAAAATGATTTCTA
83920864 GAAAATGATTTCTA
1 GAAAATGATTTCTA
83920878 GAAAATGATTT
1 GAAAATGATTT
83920889 GCTTTTCTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.33
Consensus pattern (14 bp):
GAAAATGATTTCTA
Found at i:83921455 original size:16 final size:17
Alignment explanation
Indices: 83921429--83921466 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
83921419 ATGTGAATAG
83921429 TATTATTTAAAAATTAT
1 TATTATTTAAAAATTAT
*
83921446 TATT-TTTAAAATTTAT
1 TATTATTTAAAAATTAT
83921462 TATTA
1 TATTA
83921467 AAATAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TATTATTTAAAAATTAT
Found at i:83921518 original size:22 final size:22
Alignment explanation
Indices: 83921478--83921533 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
83921468 AATAAAATTG
*
83921478 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
83921498 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
83921520 TATTAATAATTTAT
1 AAATAATAAATTAT
83921534 TGTATGACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:83925844 original size:13 final size:15
Alignment explanation
Indices: 83925826--83925858 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
83925816 TTTAAATGAC
83925826 TTTTTTT-AA-TTAA
1 TTTTTTTAAATTTAA
83925839 TTTTTTTAAATTTAA
1 TTTTTTTAAATTTAA
83925854 TTTTT
1 TTTTT
83925859 AGATAATGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 2 0.11
15 9 0.50
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTTTTTAAATTTAA
Found at i:83934643 original size:49 final size:50
Alignment explanation
Indices: 83934574--83934806 Score: 290
Period size: 49 Copynumber: 4.7 Consensus size: 50
83934564 ATCTATTGTG
* * *
83934574 AGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
83934624 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * **
83934674 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
83934724 AGGTCACATGTGTTGTAATAAGTGCAGGCTACTACGTGTATCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
83934774 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
83934807 TGCGCACCAG
Statistics
Matches: 155, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
49 71 0.46
50 46 0.30
51 38 0.25
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:83942531 original size:36 final size:36
Alignment explanation
Indices: 83942467--83942554 Score: 88
Period size: 36 Copynumber: 2.4 Consensus size: 36
83942457 GTTATATTGT
* * * * *
83942467 GAACTATGTTAACTTGGTGAATTATATTATTATGGC
1 GAACTGTGTTAATTTGGTGAATTATATTAATATAGA
*
83942503 GAACTGTGTTAATTTGGTG-ATCTGTATTAATATAGA
1 GAACTGTGTTAATTTGGTGAAT-TATATTAATATAGA
* *
83942539 GAATTGTATTAATTTG
1 GAACTGTGTTAATTTG
83942555 CCAAATTGTG
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
35 2 0.05
36 41 0.95
ACGTcount: A:0.31, C:0.06, G:0.20, T:0.43
Consensus pattern (36 bp):
GAACTGTGTTAATTTGGTGAATTATATTAATATAGA
Found at i:83943257 original size:17 final size:17
Alignment explanation
Indices: 83943237--83943277 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
83943227 ATTATTTTGC
83943237 ATGAACTATTACGTGAT
1 ATGAACTATTACGTGAT
* * *
83943254 ATGAACCATTATGTGTT
1 ATGAACTATTACGTGAT
83943271 ATGAACT
1 ATGAACT
83943278 GCTAATTGGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (17 bp):
ATGAACTATTACGTGAT
Found at i:83948744 original size:26 final size:26
Alignment explanation
Indices: 83948713--83948820 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
83948703 TGAAATGTCC
83948713 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
83948739 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
83948765 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
83948791 ATCATGGAACATTTGCCT-AACTCATT
1 ATCATGGAACATTTACCTAAAC-CATT
83948817 ATCA
1 ATCA
83948821 ATTTTTACCA
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
25 2 0.03
26 73 0.97
ACGTcount: A:0.35, C:0.23, G:0.08, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:83954821 original size:34 final size:34
Alignment explanation
Indices: 83954778--83954845 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
83954768 TTATGTAAAT
83954778 GCCAACTAGCCTTAATATTGAAAAAGAGAAGTGA
1 GCCAACTAGCCTTAATATTGAAAAAGAGAAGTGA
*
83954812 GCCAACTAGCTTTAATATTGAAAAAGAGAAGTGA
1 GCCAACTAGCCTTAATATTGAAAAAGAGAAGTGA
83954846 TAGGGGAAAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.44, C:0.13, G:0.21, T:0.22
Consensus pattern (34 bp):
GCCAACTAGCCTTAATATTGAAAAAGAGAAGTGA
Found at i:83956235 original size:12 final size:12
Alignment explanation
Indices: 83956218--83956250 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
83956208 CCTTCCCACC
83956218 CCCTCTCTCCCT
1 CCCTCTCTCCCT
83956230 CCCTCTCTCCCT
1 CCCTCTCTCCCT
83956242 CCCTCTCTC
1 CCCTCTCTC
83956251 TCTACAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (12 bp):
CCCTCTCTCCCT
Found at i:83961500 original size:15 final size:16
Alignment explanation
Indices: 83961469--83961501 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
83961459 TTGGATTGAG
83961469 AAAATTATTTAATTAA
1 AAAATTATTTAATTAA
83961485 AAAATTATTTAA-TAA
1 AAAATTATTTAATTAA
83961500 AA
1 AA
83961502 TAAATAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
AAAATTATTTAATTAA
Found at i:83972299 original size:22 final size:22
Alignment explanation
Indices: 83972255--83972335 Score: 99
Period size: 22 Copynumber: 3.7 Consensus size: 22
83972245 GCTTGTATAG
* ** *
83972255 GTTTAGCACTATGGTGTTGTTT
1 GTTTAGCACTTTGGTACTCTTT
*
83972277 GCTTAGCACTTTGGTACTCTTT
1 GTTTAGCACTTTGGTACTCTTT
* *
83972299 GTTTAGCATTTTGGTACTCTCT
1 GTTTAGCACTTTGGTACTCTTT
83972321 GTTTAGCACTTTGGT
1 GTTTAGCACTTTGGT
83972336 GCTTTCTGTT
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 50 1.00
ACGTcount: A:0.14, C:0.16, G:0.22, T:0.48
Consensus pattern (22 bp):
GTTTAGCACTTTGGTACTCTTT
Found at i:83972343 original size:22 final size:22
Alignment explanation
Indices: 83972279--83972345 Score: 91
Period size: 22 Copynumber: 3.0 Consensus size: 22
83972269 TGTTGTTTGC
83972279 TTAGCACTTTGGTACTCTT-TGT
1 TTAGCACTTTGGTACT-TTCTGT
* *
83972301 TTAGCATTTTGGTACTCTCTGT
1 TTAGCACTTTGGTACTTTCTGT
*
83972323 TTAGCACTTTGGTGCTTTCTGT
1 TTAGCACTTTGGTACTTTCTGT
83972345 T
1 T
83972346 CAAAACTCCG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
21 1 0.03
22 38 0.97
ACGTcount: A:0.12, C:0.18, G:0.19, T:0.51
Consensus pattern (22 bp):
TTAGCACTTTGGTACTTTCTGT
Found at i:83983691 original size:40 final size:40
Alignment explanation
Indices: 83983654--83983837 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 40
83983644 GCTACTCGTT
* *
83983654 CAAATGCCTTCGGGACATATCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCA
83983694 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-TTATAGTAACTCGCA
* * *
83983734 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGTTA-TAGTAACTCGCA
** * * * *
83983773 CAAATGCCTTC-GGATCTTAGTCTGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGTTATAGTAAC-TCGCA
*
83983814 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGG
83983838 ACATCATTCG
Statistics
Matches: 123, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 76 0.62
41 14 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCA
Found at i:83983766 original size:79 final size:81
Alignment explanation
Indices: 83983656--83983838 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
83983646 TACTCGTTCA
* * *
83983656 AATGCCTTCGGGACATATCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
83983719 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
** *
83983736 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCTGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
83983799 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
83983815 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
83983839 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:83986390 original size:22 final size:21
Alignment explanation
Indices: 83986316--83986391 Score: 55
Period size: 22 Copynumber: 3.4 Consensus size: 21
83986306 TAGCCACAGG
83986316 TAAATACGAATGGCACAAAGCCA
1 TAAATA-G-ATGGCACAAAGCCA
* * *
83986339 T-AATCAAGATAGCAGAGAGCCA
1 TAAAT--AGATGGCACAAAGCCA
**
83986361 TATTTAGACTGGCACAAAGCCA
1 TAAATAGA-TGGCACAAAGCCA
83986383 TAAATAGAT
1 TAAATAGAT
83986392 TAAGCAGCAC
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
21 4 0.10
22 31 0.79
23 3 0.08
24 1 0.03
ACGTcount: A:0.45, C:0.18, G:0.18, T:0.18
Consensus pattern (21 bp):
TAAATAGATGGCACAAAGCCA
Found at i:83986769 original size:27 final size:27
Alignment explanation
Indices: 83986739--83986810 Score: 126
Period size: 27 Copynumber: 2.7 Consensus size: 27
83986729 CAAAATAGTC
* *
83986739 ATTTTACCCTACAAGGGTATTTCTGTA
1 ATTTTACACTACAAGGGTATTTCAGTA
83986766 ATTTTACACTACAAGGGTATTTCAGTA
1 ATTTTACACTACAAGGGTATTTCAGTA
83986793 ATTTTACACTACAAGGGT
1 ATTTTACACTACAAGGGT
83986811 CTTTTGATAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.38
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCAGTA
Found at i:83986821 original size:27 final size:26
Alignment explanation
Indices: 83986739--83986822 Score: 98
Period size: 27 Copynumber: 3.1 Consensus size: 26
83986729 CAAAATAGTC
*
83986739 ATTTTACCCTACAAGGGTATTTCTG-TA
1 ATTTTACACTACAAGGGT-TTT-TGATA
* *
83986766 ATTTTACACTACAAGGGTATTTCAGTA
1 ATTTTACACTACAAGGGTTTTTGA-TA
83986793 ATTTTACACTACAAGGGTCTTTTGATA
1 ATTTTACACTACAAGGGT-TTTTGATA
83986820 ATT
1 ATT
83986823 GAGAGAGATA
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
25 1 0.02
26 2 0.04
27 42 0.86
28 4 0.08
ACGTcount: A:0.30, C:0.15, G:0.14, T:0.40
Consensus pattern (26 bp):
ATTTTACACTACAAGGGTTTTTGATA
Found at i:83987472 original size:27 final size:26
Alignment explanation
Indices: 83987431--83987639 Score: 161
Period size: 27 Copynumber: 7.8 Consensus size: 26
83987421 TGCATGGGCT
* *
83987431 GGGTATTTTGATAATTCTACACTATAA
1 GGGTATTTTGATAATTTTACA-TACAA
*
83987458 GGGTATTTTGGTAATTTTACATTACAA
1 GGGTATTTTGATAATTTTACA-TACAA
*
83987485 GGGTATTTTGATAATTTCACACTACAA
1 GGGTATTTTGATAATTTTACA-TACAA
* ** * *
83987512 GAGTATTTCAATAATTTTACAAATTAA
1 GGGTATTTTGATAATTTTACATA-CAA
* * **
83987539 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGATAATTTTACATA-CAA
* *
83987566 GGGTATTTCGGTAATTTTACATTACAA
1 GGGTATTTTGATAATTTTACA-TACAA
* * *
83987593 GGGTA-TTTCAGTAATTTTACAAATC-G
1 GGGTATTTTGA-TAATTTTACATA-CAA
*
83987619 GGGTATTTTAATAATTTTACA
1 GGGTATTTTGATAATTTTACA
83987640 AACTGGGGGT
Statistics
Matches: 149, Mismatches: 28, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
26 19 0.13
27 129 0.87
28 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.42
Consensus pattern (26 bp):
GGGTATTTTGATAATTTTACATACAA
Found at i:83987518 original size:54 final size:54
Alignment explanation
Indices: 83987431--83987600 Score: 195
Period size: 54 Copynumber: 3.1 Consensus size: 54
83987421 TGCATGGGCT
*
83987431 GGGTATTTTGATAA-TTCTACACTATAAGGGTATTTTGGTAATTTTACATTACAA
1 GGGTATTTTGATAATTTC-ACACTATAAGGGTATTTCGGTAATTTTACATTACAA
* * **
83987485 GGGTATTTTGATAATTTCACACTACAAGAGTATTTCAATAATTTTACAAATT--AA
1 GGGTATTTTGATAATTTCACACTATAAGGGTATTTCGGTAATTTTAC--ATTACAA
* * * *
83987539 GGGTATTTTGGTAATTTTACA-AATTGAGGGTATTTCGGTAATTTTACATTACAA
1 GGGTATTTTGATAATTTCACACTA-TAAGGGTATTTCGGTAATTTTACATTACAA
83987593 GGGTATTT
1 GGGTATTT
83987601 CAGTAATTTT
Statistics
Matches: 97, Mismatches: 13, Indels: 12
0.80 0.11 0.10
Matches are distributed among these distances:
52 3 0.03
53 1 0.01
54 87 0.90
55 3 0.03
56 3 0.03
ACGTcount: A:0.32, C:0.09, G:0.17, T:0.42
Consensus pattern (54 bp):
GGGTATTTTGATAATTTCACACTATAAGGGTATTTCGGTAATTTTACATTACAA
Found at i:83987541 original size:81 final size:78
Alignment explanation
Indices: 83987454--83987639 Score: 228
Period size: 81 Copynumber: 2.3 Consensus size: 78
83987444 ATTCTACACT
*
83987454 ATAAGGGTATTTTGGTAATTTTACATTACAAGGGTATTTTGATAATTTCACACTACAAGAGTATT
1 ATAAGGGTATTTTGGTAATTTTACATT--AAGGGTATTTCGATAATTTCACACTACAAGAGTATT
83987519 TCAATAATTTTACAA
64 TCAATAATTTTACAA
* * * * *
83987534 ATTAAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACATTACAAGGGTAT
1 A-TAAGGGTATTTTGGTAATTTTAC--ATTAAGGGTATTTCGATAATTTCACACTACAAGAGTAT
*
83987599 TTCAGTAATTTTACAA
63 TTCAATAATTTTACAA
** **
83987615 ATCGGGGTATTTTAATAATTTTACA
1 ATAAGGGTATTTTGGTAATTTTACA
83987640 AACTGGGGGT
Statistics
Matches: 92, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
80 20 0.22
81 68 0.74
83 3 0.03
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.41
Consensus pattern (78 bp):
ATAAGGGTATTTTGGTAATTTTACATTAAGGGTATTTCGATAATTTCACACTACAAGAGTATTTC
AATAATTTTACAA
Found at i:83992207 original size:15 final size:15
Alignment explanation
Indices: 83992187--83992228 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
83992177 GCTGTAAATG
83992187 GGATTTCCTTATCAT
1 GGATTTCCTTATCAT
** *
83992202 GGATTTATTTATCTT
1 GGATTTCCTTATCAT
83992217 GGATTTCCTTAT
1 GGATTTCCTTAT
83992229 TCTGGGCTTC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.19, C:0.14, G:0.14, T:0.52
Consensus pattern (15 bp):
GGATTTCCTTATCAT
Found at i:83993063 original size:27 final size:27
Alignment explanation
Indices: 83993004--83993057 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
83992994 AAACATTATG
*
83993004 AGATGTGTAAATTATACTGGTATACCC
1 AGATGTGTAAATTACACTGGTATACCC
83993031 AGATGTGTAAATTACACTGGTATACCC
1 AGATGTGTAAATTACACTGGTATACCC
83993058 GAATGTCTGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (27 bp):
AGATGTGTAAATTACACTGGTATACCC
Found at i:84000368 original size:47 final size:46
Alignment explanation
Indices: 84000309--84000427 Score: 141
Period size: 47 Copynumber: 2.5 Consensus size: 46
84000299 TGTGCTAGTG
* *
84000309 TAAGACATGTCTGGGACATGCATCGAC-TACATTATGAGAGCCAGCA
1 TAAGACATGTCTGGGACATGCATCGACATACA-CACGAGAGCCAGCA
** * **
84000355 TAAGACCATGTCTGGGACATGGCATCGACATTGACACGAGAGCTAGTG
1 TAAGA-CATGTCTGGGACAT-GCATCGACATACACACGAGAGCCAGCA
84000403 TAAGACATGTCTGGGACATGCATCG
1 TAAGACATGTCTGGGACATGCATCG
84000428 GCCTCGAGAT
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
46 11 0.17
47 28 0.44
48 22 0.35
49 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (46 bp):
TAAGACATGTCTGGGACATGCATCGACATACACACGAGAGCCAGCA
Found at i:84000451 original size:46 final size:47
Alignment explanation
Indices: 84000305--84000521 Score: 198
Period size: 46 Copynumber: 4.7 Consensus size: 47
84000295 TTTGTGTGCT
* *
84000305 AGTGTAAGACATGTCTGGGACATGCATC-GACTAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTACGA-GATGAGAGCC
** * * * * * *
84000351 AGCATAAGACCATGTCTGGGACATGGCATCGACAT-TGACACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTACGAGATGAGAGCC
84000399 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAGATG-AGAGCC
* * *
84000445 AGTGTAAGACATGTCTGAGACATGCATCGG-CTACGAGAT--GTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAGATGAGAGCC
*
84000489 AGTGTAAGACCATGTCTGAGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
84000522 ACGTATAGAG
Statistics
Matches: 141, Mismatches: 20, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
44 11 0.08
45 16 0.11
46 64 0.45
47 29 0.21
48 19 0.13
49 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAGATGAGAGCC
Found at i:84013881 original size:21 final size:21
Alignment explanation
Indices: 84013848--84013891 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
84013838 ACCAAGAGTC
*
84013848 AAAAGGAGCCAAAAATGAGCCA
1 AAAAGGAGACAAAAATGA-CCA
*
84013870 AAAAGG-GACAAAACTGACCA
1 AAAAGGAGACAAAAATGACCA
84013890 AA
1 AA
84013892 TCGAGAAGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 5 0.25
21 9 0.45
22 6 0.30
ACGTcount: A:0.57, C:0.18, G:0.20, T:0.05
Consensus pattern (21 bp):
AAAAGGAGACAAAAATGACCA
Found at i:84015487 original size:17 final size:17
Alignment explanation
Indices: 84015460--84015547 Score: 53
Period size: 15 Copynumber: 5.2 Consensus size: 17
84015450 AAACCCTAAT
84015460 TTTTCCTTTTCCTT-TTTC
1 TTTT-CTTTT-CTTCTTTC
84015478 TTTTCTTTTCTTCTTTC
1 TTTTCTTTTCTTCTTTC
84015495 -TTTC-TTTCTAT-TTT-
1 TTTTCTTTTCT-TCTTTC
* * *
84015509 GTTTCTTCTC-TATTTC
1 TTTTCTTTTCTTCTTTC
*
84015525 TTTTTCTTGTTTTTCTTTC
1 -TTTTCTT-TTCTTCTTTC
84015544 TTTT
1 TTTT
84015548 ATTTGTTCTT
Statistics
Matches: 56, Mismatches: 5, Indels: 18
0.71 0.06 0.23
Matches are distributed among these distances:
14 1 0.02
15 15 0.27
16 11 0.20
17 15 0.27
18 9 0.16
19 5 0.09
ACGTcount: A:0.02, C:0.20, G:0.02, T:0.75
Consensus pattern (17 bp):
TTTTCTTTTCTTCTTTC
Found at i:84021244 original size:47 final size:47
Alignment explanation
Indices: 84021184--84021330 Score: 222
Period size: 47 Copynumber: 3.1 Consensus size: 47
84021174 TATAAGTTGA
* *
84021184 AGTTAAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTT
1 AGTTAAGCTTGTTAAATTTACTCTTAATATTTCCGGATAAGTTACTT
* *
84021231 AGTTAATCTTGTTAAATTTACTCTTAATATTTCCAGATAAGTTACTT
1 AGTTAAGCTTGTTAAATTTACTCTTAATATTTCCGGATAAGTTACTT
* * * *
84021278 AGTTAAGCTTGTTAAATTTTCCCTTAATATTTCTGGATAATTTACTT
1 AGTTAAGCTTGTTAAATTTACTCTTAATATTTCCGGATAAGTTACTT
84021325 AGTTAA
1 AGTTAA
84021331 AGAAAATTTT
Statistics
Matches: 90, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 90 1.00
ACGTcount: A:0.30, C:0.13, G:0.12, T:0.46
Consensus pattern (47 bp):
AGTTAAGCTTGTTAAATTTACTCTTAATATTTCCGGATAAGTTACTT
Found at i:84022198 original size:45 final size:45
Alignment explanation
Indices: 84022133--84022352 Score: 297
Period size: 45 Copynumber: 5.0 Consensus size: 45
84022123 TATCGTACAG
* *
84022133 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
84022178 TACTATTCGGGCCTTCGAGCCTAGCAGGTTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * * *
84022223 TACTATTCGGGCCTTTGATCCTAGCAAGCTATAATGCTGATGAGA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
84022268 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTG-GA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
84022312 -A-TGATATCGGG-CTTCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 TACT-AT-TCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
84022353 ATGAATTCGG
Statistics
Matches: 155, Mismatches: 17, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
42 11 0.07
43 21 0.14
44 7 0.05
45 116 0.75
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (45 bp):
TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:84022911 original size:16 final size:18
Alignment explanation
Indices: 84022880--84022912 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
84022870 AACTCGTGAC
84022880 ACTATCTATCATTTTGGT
1 ACTATCTATCATTTTGGT
84022898 ACTA-CTAT-ATTTTGG
1 ACTATCTATCATTTTGG
84022913 AGCTAGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.48
Consensus pattern (18 bp):
ACTATCTATCATTTTGGT
Found at i:84024020 original size:17 final size:16
Alignment explanation
Indices: 84023998--84024030 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
84023988 CCCTTCTCAC
84023998 CTTTTCTTTTCTTCCAT
1 CTTTTCTTTTC-TCCAT
84024015 CTTTTCTTTTCTCCAT
1 CTTTTCTTTTCTCCAT
84024031 AGCCGAACCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.06, C:0.30, G:0.00, T:0.64
Consensus pattern (16 bp):
CTTTTCTTTTCTCCAT
Found at i:84026317 original size:46 final size:46
Alignment explanation
Indices: 84026264--84026532 Score: 262
Period size: 46 Copynumber: 5.8 Consensus size: 46
84026254 TATTTGGGCA
** *
84026264 TCCGAACTCGTTGAGTTGAGTTTGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGG
* * * *
84026310 TCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--AGG
* *
84026355 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAGATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGG
* * * *
84026403 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--AGG
* * *
84026448 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGG
* *
84026496 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84026533 GCGGGTTACA
Statistics
Matches: 183, Mismatches: 26, Indels: 28
0.77 0.11 0.12
Matches are distributed among these distances:
43 11 0.06
45 8 0.04
46 90 0.49
47 56 0.31
48 8 0.04
50 10 0.05
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGG
Found at i:84026398 original size:93 final size:93
Alignment explanation
Indices: 84026260--84026524 Score: 440
Period size: 93 Copynumber: 2.8 Consensus size: 93
84026250 GGGATATTTG
**
84026260 GGCATCCGAACTCGTTGAGTTGAGTTTGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
*
84026325 TTGAGTTCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
84026353 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAGATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
84026418 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * * *
84026446 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
84026511 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
84026525 ACTTATGGGC
Statistics
Matches: 160, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 160 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:84029417 original size:15 final size:15
Alignment explanation
Indices: 84029397--84029464 Score: 75
Period size: 15 Copynumber: 4.6 Consensus size: 15
84029387 GTATCTTGGG
84029397 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
84029412 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
84029427 -TTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
84029441 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
84029456 TTTCTTTAT
1 TTTCTTTAT
84029465 TCGGTTTTCT
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
14 12 0.28
15 31 0.72
ACGTcount: A:0.12, C:0.18, G:0.13, T:0.57
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:84029455 original size:29 final size:29
Alignment explanation
Indices: 84029388--84029474 Score: 79
Period size: 29 Copynumber: 3.0 Consensus size: 29
84029378 CATAGTATCG
* * * *
84029388 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTT-GGATTCTTTATTCTGGATTTCTC
*
84029418 TAT-TCTGGATTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTCTTTATTCTGGATTTCTC
*
84029447 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGA-TTCTTTATTCTGGATTTCT
84029475 TGTTATCTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 33 0.69
30 15 0.31
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTCTTTATTCTGGATTTCTC
Found at i:84029475 original size:14 final size:14
Alignment explanation
Indices: 84029395--84029471 Score: 68
Period size: 15 Copynumber: 5.4 Consensus size: 14
84029385 TCGTATCTTG
*
84029395 GGTTTCTTTATCCT
1 GGTTTCTTTATTCT
*
84029409 GGATCTCTTTATTCT
1 GG-TTTCTTTATTCT
*
84029424 GGATTCTTTATTCT
1 GGTTTCTTTATTCT
*
84029438 GGGTTTCTCTA-TCTT
1 -GGTTTCTTTATTC-T
84029453 GGATTTCTTTATTC-
1 GG-TTTCTTTATTCT
84029467 GGTTT
1 GGTTT
84029472 TCTTGTTATC
Statistics
Matches: 51, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
13 3 0.06
14 18 0.35
15 28 0.55
16 2 0.04
ACGTcount: A:0.10, C:0.17, G:0.17, T:0.56
Consensus pattern (14 bp):
GGTTTCTTTATTCT
Found at i:84031939 original size:38 final size:39
Alignment explanation
Indices: 84031854--84032010 Score: 165
Period size: 38 Copynumber: 3.7 Consensus size: 39
84031844 TATTTGGGCA
* *
84031854 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C--GT-GATGAATG
84031898 TCCGAACTCGTTGAGTTGAGT-CGAGTTCGTGATGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGATGAATG
84031936 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGT--GATG-AA-T--G
84031981 CATCCG-ACTCGTTGAGTTGAGTCCGAGTTC
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTC
84032011 ACTTATGGAT
Statistics
Matches: 102, Mismatches: 2, Indels: 16
0.85 0.02 0.13
Matches are distributed among these distances:
38 28 0.27
39 10 0.10
41 5 0.05
42 2 0.02
43 7 0.07
44 21 0.21
45 1 0.01
46 24 0.24
47 4 0.04
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.31
Consensus pattern (39 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGATGAATG
Found at i:84031966 original size:20 final size:20
Alignment explanation
Indices: 84031905--84031966 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
84031895 ATGTCCGAAC
84031905 TCGTTGAGTTGAGT-CGAGT
1 TCGTTGAGTTGAGTCCGAGT
**
84031924 TCG-TGA--TGAATGTCCGAAC
1 TCGTTGAGTTG-A-GTCCGAGT
84031943 TCGTTGAGTTGAGTCCGAGT
1 TCGTTGAGTTGAGTCCGAGT
84031963 TCGT
1 TCGT
84031967 GAGATGTAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 11
0.69 0.08 0.23
Matches are distributed among these distances:
16 2 0.06
17 1 0.03
18 5 0.15
19 9 0.27
20 13 0.39
21 1 0.03
22 2 0.06
ACGTcount: A:0.18, C:0.16, G:0.32, T:0.34
Consensus pattern (20 bp):
TCGTTGAGTTGAGTCCGAGT
Found at i:84033582 original size:27 final size:26
Alignment explanation
Indices: 84033511--84033625 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
84033501 TGAAGGAAGC
84033511 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
84033538 GTTTTTGGTGGCTATGCCACAAATATCT
1 G-TTCTGGTGGCTATGCCAC-AATATCT
*
84033566 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * *
84033592 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
84033619 GTTCTGG
1 GTTCTGG
84033626 CAACCATGCT
Statistics
Matches: 81, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
26 14 0.17
27 41 0.51
28 26 0.32
ACGTcount: A:0.19, C:0.22, G:0.23, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:84040056 original size:47 final size:47
Alignment explanation
Indices: 84039996--84040142 Score: 240
Period size: 47 Copynumber: 3.1 Consensus size: 47
84039986 TATAAGTTGA
** *
84039996 AGTTAAGCTTGTTAAATTTGCTCTTAATATTTCTAGACAAGTTACTT
1 AGTTAAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTT
*
84040043 AGTTAAGTTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTT
1 AGTTAAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTT
* *
84040090 AGTTAAGCTTGTTAAATTTGCCCTTAATATTTCCGGATAATTTACTT
1 AGTTAAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTT
84040137 AGTTAA
1 AGTTAA
84040143 AGAAAATTTT
Statistics
Matches: 93, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 93 1.00
ACGTcount: A:0.29, C:0.12, G:0.14, T:0.45
Consensus pattern (47 bp):
AGTTAAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTT
Found at i:84041217 original size:27 final size:26
Alignment explanation
Indices: 84041182--84041293 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
84041172 AGCATGGCTG
* *
84041182 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
84041208 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
84041236 CCAGAACCGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
84041263 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
84041290 CCAG
1 CCAG
84041294 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.70
28 16 0.22
ACGTcount: A:0.37, C:0.24, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:84041282 original size:54 final size:54
Alignment explanation
Indices: 84041182--84041293 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
84041172 AGCATGGCTG
*
84041182 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAACCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAACCA
* * * * *
84041236 CCAGAACCGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAACCA
84041290 CCAG
1 CCAG
84041294 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.37, C:0.24, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAACCA
Found at i:84042755 original size:24 final size:24
Alignment explanation
Indices: 84042723--84042771 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
84042713 ACACAGTTCA
84042723 CCCTAATCAGCTCCTAAATCCTCT
1 CCCTAATCAGCTCCTAAATCCTCT
* *
84042747 CCCTGATCAGCTCCTAAATCTTCT
1 CCCTAATCAGCTCCTAAATCCTCT
84042771 C
1 C
84042772 TAGATAGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.22, C:0.41, G:0.06, T:0.31
Consensus pattern (24 bp):
CCCTAATCAGCTCCTAAATCCTCT
Found at i:84043906 original size:45 final size:45
Alignment explanation
Indices: 84043837--84044057 Score: 297
Period size: 45 Copynumber: 5.0 Consensus size: 45
84043827 TATAGTACAG
* * * *
84043837 TACTATTCGAGCCTTTGAGGCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* *
84043882 TACTATTTGGGCCTTCGAGCCTAGCAGGCTATGATGCCGGTGAAA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * *
84043927 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
*
84043972 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATATTGCCGGTGAAA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* *
84044017 TGA-TA-TCAGG-CTTCGAGCCTAGCAGGCGA-AATGCCGGTGAA
1 T-ACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAA
84044058 TGAATTTGGG
Statistics
Matches: 157, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
42 11 0.07
43 18 0.11
44 4 0.03
45 123 0.78
46 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (45 bp):
TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:84044616 original size:16 final size:18
Alignment explanation
Indices: 84044585--84044617 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
84044575 AACTCGTGAC
84044585 ACTATCTATCATTTTGGT
1 ACTATCTATCATTTTGGT
84044603 ACTA-CTAT-ATTTTGG
1 ACTATCTATCATTTTGG
84044618 AGCTAGTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.48
Consensus pattern (18 bp):
ACTATCTATCATTTTGGT
Found at i:84049731 original size:17 final size:18
Alignment explanation
Indices: 84049690--84049732 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
84049680 TGTATTTACT
84049690 TATTATATAAGTAAATAA
1 TATTATATAAGTAAATAA
* * *
84049708 CAATATA-AAGTAAATTA
1 TATTATATAAGTAAATAA
84049725 TATTATAT
1 TATTATAT
84049733 TATATAATTA
Statistics
Matches: 19, Mismatches: 5, Indels: 2
0.73 0.19 0.08
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.40
Consensus pattern (18 bp):
TATTATATAAGTAAATAA
Found at i:84055060 original size:13 final size:13
Alignment explanation
Indices: 84055042--84055069 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
84055032 AATTTAATCC
84055042 CTATAACACAAAA
1 CTATAACACAAAA
84055055 CTATAACACAAAA
1 CTATAACACAAAA
84055068 CT
1 CT
84055070 TATGACCTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.25, G:0.00, T:0.18
Consensus pattern (13 bp):
CTATAACACAAAA
Found at i:84055323 original size:12 final size:12
Alignment explanation
Indices: 84055306--84055399 Score: 52
Period size: 12 Copynumber: 7.4 Consensus size: 12
84055296 CCCTAATTTC
84055306 TCTTTT-TTCTTT
1 TCTTTTCTT-TTT
*
84055318 TCTTTTCTTCTT
1 TCTTTTCTTTTT
84055330 TC-TTTCTTTCTT
1 TCTTTTCTTT-TT
84055342 TCTATTTCGTTTCTT
1 TCT-TTTC-TTT-TT
84055357 CTCTGTTTC-TTTT
1 -TCT-TTTCTTTTT
84055370 TCTTGTT-TTTCTT
1 TCTT-TTCTTT-TT
* *
84055383 TCTTTTATTTAT
1 TCTTTTCTTTTT
84055395 TCTTT
1 TCTTT
84055400 ATTTCATTTT
Statistics
Matches: 68, Mismatches: 4, Indels: 20
0.74 0.04 0.22
Matches are distributed among these distances:
11 7 0.10
12 29 0.43
13 13 0.19
14 6 0.09
15 6 0.09
16 7 0.10
ACGTcount: A:0.03, C:0.19, G:0.03, T:0.74
Consensus pattern (12 bp):
TCTTTTCTTTTT
Found at i:84055336 original size:30 final size:30
Alignment explanation
Indices: 84055306--84055368 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 30
84055296 CCCTAATTTC
*
84055306 TCTTT-TTTCT-TTTCTTTTCTTCTTTCTT
1 TCTTTCTTTCTATTTCGTTTCTTCTTTCTT
* *
84055334 TCTTTCTTTCTATTTCGTTTCTTCTCTGTT
1 TCTTTCTTTCTATTTCGTTTCTTCTTTCTT
84055364 TCTTT
1 TCTTT
84055369 TTCTTGTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 5 0.17
29 5 0.17
30 20 0.67
ACGTcount: A:0.02, C:0.22, G:0.03, T:0.73
Consensus pattern (30 bp):
TCTTTCTTTCTATTTCGTTTCTTCTTTCTT
Found at i:84055358 original size:14 final size:14
Alignment explanation
Indices: 84055302--84055392 Score: 59
Period size: 15 Copynumber: 6.6 Consensus size: 14
84055292 CAAACCCTAA
*
84055302 TTTCTCTTT-TTTC
1 TTTCTATTTCTTTC
84055315 TTTTCT-TTTC-TTC
1 -TTTCTATTTCTTTC
84055328 TTTC--TTTCTTTC
1 TTTCTATTTCTTTC
84055340 TTTCTATTTCGTTTC
1 TTTCTATTTC-TTTC
* *
84055355 TTCTCTGTTTCTTTT
1 TT-TCTATTTCTTTC
* *
84055370 TCTTGTTTTTCTTTC
1 T-TTCTATTTCTTTC
84055385 TTT-TATTT
1 TTTCTATTT
84055393 ATTCTTTATT
Statistics
Matches: 64, Mismatches: 6, Indels: 15
0.75 0.07 0.18
Matches are distributed among these distances:
11 4 0.06
12 11 0.17
13 10 0.16
14 11 0.17
15 20 0.31
16 8 0.12
ACGTcount: A:0.02, C:0.20, G:0.03, T:0.75
Consensus pattern (14 bp):
TTTCTATTTCTTTC
Found at i:84055385 original size:30 final size:30
Alignment explanation
Indices: 84055306--84055386 Score: 78
Period size: 30 Copynumber: 2.8 Consensus size: 30
84055296 CCCTAATTTC
* *
84055306 TCTTT-TTTC-TTTTCTTTTCTTCTTTCTT
1 TCTTTCTTTCTTTTTCGTTTCTTCTCTCTT
* *
84055334 TCTTTCTTTCTATTTCGTTTCTTCTCTGTT
1 TCTTTCTTTCTTTTTCGTTTCTTCTCTCTT
* *
84055364 TCTTTTTCTTGTTTTTC-TTTCTT
1 TCTTTCT-TTCTTTTTCGTTTCTT
84055387 TTATTTATTC
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
28 5 0.12
29 4 0.09
30 27 0.63
31 7 0.16
ACGTcount: A:0.01, C:0.21, G:0.04, T:0.74
Consensus pattern (30 bp):
TCTTTCTTTCTTTTTCGTTTCTTCTCTCTT
Found at i:84058172 original size:23 final size:22
Alignment explanation
Indices: 84058126--84058169 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
84058116 AATTATTAAA
84058126 ATAATGAATTTTAACTAATTTT
1 ATAATGAATTTTAACTAATTTT
* * *
84058148 ATAATTAATTTTTATTAATTTT
1 ATAATGAATTTTAACTAATTTT
84058170 TATCATTTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (22 bp):
ATAATGAATTTTAACTAATTTT
Found at i:84069226 original size:20 final size:20
Alignment explanation
Indices: 84069160--84069226 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
84069150 ATTTTGATAA
*
84069160 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
84069180 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
84069200 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
84069220 ACGTGAT
1 ACATGAT
84069227 GTAATCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:84069374 original size:24 final size:23
Alignment explanation
Indices: 84069277--84069372 Score: 156
Period size: 23 Copynumber: 4.1 Consensus size: 23
84069267 AGGAAGTGAA
84069277 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
84069300 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
84069323 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* * *
84069346 AAAAGGTCTTTTACCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
84069370 AAA
1 AAA
84069373 AGAGGCTAGG
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
23 49 0.71
24 20 0.29
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:84069591 original size:31 final size:30
Alignment explanation
Indices: 84069552--84069615 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 30
84069542 CGTTTACAGT
*
84069552 AAAAGCTTCAGCCCAGTAATATGAAATTTG
1 AAAAGCTTCAGCCCAGTAATATGAAATATG
* **
84069582 AAAAGGCTTCGGCCCAGTGTTATGAAATATG
1 AAAA-GCTTCAGCCCAGTAATATGAAATATG
84069613 AAA
1 AAA
84069616 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 4 0.14
31 25 0.86
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (30 bp):
AAAAGCTTCAGCCCAGTAATATGAAATATG
Found at i:84075572 original size:39 final size:39
Alignment explanation
Indices: 84075502--84075723 Score: 254
Period size: 39 Copynumber: 5.6 Consensus size: 39
84075492 GCTACTCGTT
* **
84075502 CAAATGCCTTCGGGACATAGCCCGTTA-TAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
* *
84075541 CAAATGCCTTCGGGACTTAACCC-GATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
*
84075580 CCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
*
84075619 CCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
* * * * *
84075658 CAAATGCCTTCGGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGAAT-TAGTAAC-TCGCA
84075699 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
84075724 CATCATTCGA
Statistics
Matches: 160, Mismatches: 16, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
38 7 0.04
39 114 0.71
40 31 0.19
41 8 0.05
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
Found at i:84083726 original size:39 final size:40
Alignment explanation
Indices: 84083608--84083831 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
84083598 GCTACTCGTT
* *
84083608 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
84083648 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
84083688 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAAATCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
84083727 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGCAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
84083766 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
84083807 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
84083832 CATCATTCGA
Statistics
Matches: 162, Mismatches: 15, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
38 2 0.01
39 71 0.44
40 76 0.47
41 13 0.08
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:84083791 original size:118 final size:120
Alignment explanation
Indices: 84083610--84083831 Score: 292
Period size: 118 Copynumber: 1.9 Consensus size: 120
84083600 TACTCGTTCA
* *
84083610 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* * *
84083675 TTAGTAAC-TCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAAATCGCACC
66 ATAGTAACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAAATCGCACC
* **
84083729 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGCAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGCAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
84083791 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
84083832 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
117 4 0.04
118 58 0.65
119 27 0.30
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTAAATCGCACC
Found at i:84090858 original size:21 final size:21
Alignment explanation
Indices: 84090819--84090865 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
84090809 GCATACACTT
** *
84090819 GTGTGAAGATGGCATACGCCC
1 GTGTGAAGATAACACACGCCC
*
84090840 GTGTGAAGATAACACACGCCT
1 GTGTGAAGATAACACACGCCC
84090861 GTGTG
1 GTGTG
84090866 TCCAAGGGAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.21
Consensus pattern (21 bp):
GTGTGAAGATAACACACGCCC
Found at i:84095614 original size:172 final size:176
Alignment explanation
Indices: 84095150--84095662 Score: 601
Period size: 172 Copynumber: 2.9 Consensus size: 176
84095140 ATTGGTAAAG
* * * *** *
84095150 ATTGAAGATTTTGTCTCCCTGAGATTGCAGTGGAGCAGATCTTCGCAGATGGTGAATCTTATCTC
1 ATTGAAGA-TTTATCTCCCTGAGATTACAGCGGAGCAGA--TTAAAAAATGGTGAATCTTATCTC
* * *
84095215 CATGCATCGGCAATGGAGCAGATTTTACCACCAGCCTCATAT-T-TGAGGTAGCAAGAGAGCAGA
63 CATGTATCGGCAATGGAGCAGATTTTACCACCAGCCTCATCTCTCTGAGGTAGCAAGAGAGCAGG
* * *
84095278 CTGAAGAGTGAGTCTTATCTTCCTGATGTAGCAAGGAAGCAGACTGAGA
128 CTGAAGAATGAGTCTTATCTTCTTGAAGTAGCAAGGAAGCAGACTGAGA
* *** * *
84095327 ATTGAAGATTTTATCTCCCTGAGATTACAGCGGAGTAGATCTTCGCAGATGGTGAGTCTTATCTC
1 ATTGAAGA-TTTATCTCCCTGAGATTACAGCGGAGCAGA--TTAAAAAATGGTGAATCTTATCTC
* * *
84095392 CATGTATCGGCAATGGAGCAGATTTTACCACCAACCTCATCTCTCTGAGGTAGCATGAGAGTAGG
63 CATGTATCGGCAATGGAGCAGATTTTACCACCAGCCTCATCTCTCTGAGGTAGCAAGAGAGCAGG
* * *
84095457 TTGAAGAATGAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGATTGAGA
128 CTGAAGAATGAGTCTTATCTTCTTGAAGTAGCAAGGAAGCAGACTGAGA
* * *
84095506 ATTG-A-A-TTATCTCCCTGA-AGTTGCAGTGGAGCAGA-TAAAAAATGGTTAATCTTATCTCCA
1 ATTGAAGATTTATCTCCCTGAGA-TTACAGCGGAGCAGATTAAAAAATGGTGAATCTTATCTCCA
* * *
84095566 TGTATCGGCAATGGA-CTAGATTTTACCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCGGGC
65 TGTATCGGCAATGGAGC-AGATTTTACCACCAGCCTCATCTCTCTGAGGTAGCAAGAGAGCAGGC
* *
84095630 TGAAGATTGAGTCTTATCTTTTTGAAGTAGCAA
129 TGAAGAATGAGTCTTATCTTCTTGAAGTAGCAA
84095663 AAAAGCATAT
Statistics
Matches: 297, Mismatches: 35, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
171 1 0.00
172 104 0.35
174 1 0.00
175 24 0.08
177 100 0.34
178 2 0.01
179 65 0.22
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (176 bp):
ATTGAAGATTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAAAATGGTGAATCTTATCTCCAT
GTATCGGCAATGGAGCAGATTTTACCACCAGCCTCATCTCTCTGAGGTAGCAAGAGAGCAGGCTG
AAGAATGAGTCTTATCTTCTTGAAGTAGCAAGGAAGCAGACTGAGA
Found at i:84095835 original size:149 final size:147
Alignment explanation
Indices: 84095553--84095838 Score: 360
Period size: 149 Copynumber: 1.9 Consensus size: 147
84095543 AAAAATGGTT
* *
84095553 AATCTTATCTCCATGTATCGGCAATGGACTAGATTTTACCACTAGCCTTATCTCTCTGAGGTAGC
1 AATCTTATCTCCATGTATCGGCAATGAACTAGATTTTACCACTAACCTTATCTCTCTGAGGTAGC
* * * * *
84095618 AAGAGAGCGGGCTGAAGATTGAGTCTTATCTTTTTGAAGTAGCAAAAAAGCATATTGAAGATTAA
66 AAGAGAGCAGGCTGAAGATTGAGTCTTATCTTCTTGAAGTAGCAAAAAAGCAGACTAAAGATTAA
84095683 AGATCTTGGAGGAGGCA
131 AGATCTTGGAGGAGGCA
** * *
84095700 AATCTTATCTCCATGTATCGGTGATGAAGC-AGATTTTAGTCACTAACTTTATCTCTCTGAGGTA
1 AATCTTATCTCCATGTATCGGCAATGAA-CTAGATTTTA-CCACTAACCTTATCTCTCTGAGGTA
* * * * * *
84095764 GCAAGAGAGCATGTTGGTA-ATTGGAGTCTTATCTTCTTGAGGTAGCAAAGAAGTAGACTAAAGA
64 GCAAGAGAGCAGGCT-GAAGATT-GAGTCTTATCTTCTTGAAGTAGCAAAAAAGCAGACTAAAGA
*
84095828 TTGAAGATCTT
127 TTAAAGATCTT
84095839 ATTTCCATGT
Statistics
Matches: 117, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
147 33 0.28
148 38 0.32
149 46 0.39
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (147 bp):
AATCTTATCTCCATGTATCGGCAATGAACTAGATTTTACCACTAACCTTATCTCTCTGAGGTAGC
AAGAGAGCAGGCTGAAGATTGAGTCTTATCTTCTTGAAGTAGCAAAAAAGCAGACTAAAGATTAA
AGATCTTGGAGGAGGCA
Found at i:84107475 original size:54 final size:54
Alignment explanation
Indices: 84107392--84107535 Score: 179
Period size: 54 Copynumber: 2.7 Consensus size: 54
84107382 AGGGAGGGAA
*
84107392 GCCAAAGTGAAAACCTGCAAAGGGCGCTTTGAGACTTTCAAA-AAAAAAGG-GGG
1 GCCAAAGTGAAAACCTGCAAAGGGCGCTTTGAGAC-TTCAAATAAAAAAGGAAGG
* *
84107445 GTCCAAAGTGAAAACCTGCAAAGGGCGCTTTAAGAC--CAAATAAAAATGGAAAGG
1 G-CCAAAGTGAAAACCTGCAAAGGGCGCTTTGAGACTTCAAATAAAAAAGG-AAGG
** *
84107499 GCCAAAGTGAAAACCCACAAAGGGCACTTTGAGACTT
1 GCCAAAGTGAAAACCTGCAAAGGGCGCTTTGAGACTT
84107536 AATAATAATC
Statistics
Matches: 78, Mismatches: 7, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
51 4 0.05
52 7 0.09
53 31 0.40
54 36 0.46
ACGTcount: A:0.41, C:0.19, G:0.25, T:0.15
Consensus pattern (54 bp):
GCCAAAGTGAAAACCTGCAAAGGGCGCTTTGAGACTTCAAATAAAAAAGGAAGG
Found at i:84107540 original size:53 final size:51
Alignment explanation
Indices: 84107392--84107540 Score: 172
Period size: 53 Copynumber: 2.8 Consensus size: 51
84107382 AGGGAGGGAA
* *
84107392 GCCAAAGTGAAAACCTGCAAAGGGCGCTTTGAGACTTTCAAAAAAAAAGGGGG
1 GCCAAAGTGAAAACCTGCAAAGGGCGCTTTGAGAC-TT-AATAAAAAAGGAGG
* ** *
84107445 GTCCAAAGTGAAAACCTGCAAAGGGCGCTTTAAGACCAAATAAAAATGGAAAGG
1 G-CCAAAGTGAAAACCTGCAAAGGGCGCTTTGAGACTTAATAAAAAAGG--AGG
** *
84107499 GCCAAAGTGAAAACCCACAAAGGGCACTTTGAGACTTAATAA
1 GCCAAAGTGAAAACCTGCAAAGGGCGCTTTGAGACTTAATAA
84107541 TAATCAAAAA
Statistics
Matches: 81, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
52 9 0.11
53 36 0.44
54 36 0.44
ACGTcount: A:0.42, C:0.18, G:0.24, T:0.15
Consensus pattern (51 bp):
GCCAAAGTGAAAACCTGCAAAGGGCGCTTTGAGACTTAATAAAAAAGGAGG
Found at i:84109136 original size:172 final size:176
Alignment explanation
Indices: 84108653--84109353 Score: 591
Period size: 177 Copynumber: 4.0 Consensus size: 176
84108643 ATTGGTAAAG
* * * *** *
84108653 ATTGAAGATTTTGTCTCCCTGAGATTACAGTGGAGCAGATCTTCGCAGATGGTGAATCTTATCTC
1 ATTGAAGA-TTTATCTCCCTGAGATTGCAGCGGAGCAGA--TTAAAAAATGGTGAATCTTATCTC
* * *
84108718 CATGTATCGGTAATGGAGCAGATTTTACCACTAGCCTCATCT-T-TGAGGTAGCAAGAGAGCAGA
63 CATGTATCGGAAATGGAGCAGATTTTACCACCAGCCTCATCTCTCTGAGGTAGCAAGAGAGCAGG
* * * *
84108781 CTGAAGAGTGAGTCTTATCTTCCTGATGTAGTAAGGAAGCAGACTGAGA
128 TTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAGA
* *** * *
84108830 ATTGAAGATTTTATCTCCCTGAGATTGCAGCGGAGTAGATCTTCGCAGATGGTGAGTCTTATCTC
1 ATTGAAGA-TTTATCTCCCTGAGATTGCAGCGGAGCAGA--TTAAAAAATGGTGAATCTTATCTC
* * *
84108895 CATGTATCGGCAATGGAGCAGATTTTACCACCAACCTCATCTCTCTGAGGTAGCATGAGAGCAGG
63 CATGTATCGGAAATGGAGCAGATTTTACCACCAGCCTCATCTCTCTGAGGTAGCAAGAGAGCAGG
84108960 TTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAGA
128 TTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAGA
** *
84109009 ATTG-A-A-TTATCTCCCTGA-AGTTGCAGTTGAGCAGA-TAAAAAATGGTTAATCTTATCTCCA
1 ATTGAAGATTTATCTCCCTGAGA-TTGCAGCGGAGCAGATTAAAAAATGGTGAATCTTATCTCCA
* * * * * *
84109069 TGTATCAGAAATGGAGTAGATTTTACCACCAGCCTTATCTCTCTGAGGTAGCAACAGAACGGGTT
65 TGTATCGGAAATGGAGCAGATTTTACCACCAGCCTCATCTCTCTGAGGTAGCAAGAGAGCAGGTT
* ** * * ** * *
84109134 GAAGATTGAGTCTTATCTTTTTGAAGTAGAAAAAAAGTAGATTGA-A
130 GAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAGA
* * * * * * ** ** *
84109180 GATTAAATATCTTATTTCCCTAAGTACTG--GCGGAGTAGATTGGAGGA-GGCGAATCTTATCTC
1 -ATTGAAGAT-TTATCTCCCTGAG-ATTGCAGCGGAGCAGATTAAAAAATGGTGAATCTTATCTC
* ** * * * * * * *
84109242 CTTGTATCGGCGATGAAGCAGATTTTAGTCACTAACTTTATCTCTCTGAGGTAGCAAGAGAGCAT
63 CATGTATCGGAAATGGAGCAGATTTTA-CCACCAGCCTCATCTCTCTGAGGTAGCAAGAGAGCAG
* * * *
84109307 GTTG--GCAATTGAAGTCTTATCTTCTTAAGGTAGCAAAGAAGTAGACT
127 GTTGAAG-AA-TG-AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACT
84109354 AAAGATTAAA
Statistics
Matches: 434, Mismatches: 75, Indels: 30
0.81 0.14 0.06
Matches are distributed among these distances:
171 1 0.00
172 114 0.26
173 1 0.00
174 3 0.01
175 66 0.15
176 48 0.11
177 131 0.30
178 3 0.01
179 67 0.15
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.30
Consensus pattern (176 bp):
ATTGAAGATTTATCTCCCTGAGATTGCAGCGGAGCAGATTAAAAAATGGTGAATCTTATCTCCAT
GTATCGGAAATGGAGCAGATTTTACCACCAGCCTCATCTCTCTGAGGTAGCAAGAGAGCAGGTTG
AAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAGA
Found at i:84113731 original size:21 final size:22
Alignment explanation
Indices: 84113705--84113745 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
84113695 CACATGACAC
*
84113705 AGGGGC-ACACGCCCGTGTGGG
1 AGGGGCAACACACCCGTGTGGG
84113726 AGGGGCAACACACCCGTGTG
1 AGGGGCAACACACCCGTGTG
84113746 AGCATTCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.20, C:0.29, G:0.41, T:0.10
Consensus pattern (22 bp):
AGGGGCAACACACCCGTGTGGG
Found at i:84114396 original size:324 final size:324
Alignment explanation
Indices: 84113807--84114465 Score: 1228
Period size: 324 Copynumber: 2.0 Consensus size: 324
84113797 CAAGACAGGG
84113807 ACACGCCCATGTTCTCCACCTGTGTGGAATTAATTGTAAATGCACACCTACAGGGGTTTTCACAC
1 ACACGCCCATGTTCTCCACCTGTGTGGAATTAATTGTAAATGCACACCTACAGGGGTTTTCACAC
*
84113872 GGCCTGGCACACGCCCGTGTTTCTAGCCCGTGTCCTTCACATGGCCATGACATGCTCGTGTCCTA
66 GGCCTGGCACACGCCCGTGTTTCTAGCCCGTGTCCTTCACATGGCCATGACACGCTCGTGTCCTA
* *
84113937 GCCCGTGTGCAAAAAACTGGACATTCTTTTTCTGACGTCAGCATTTCATAAGGGTTACATGGCCA
131 GCCCATGTGCAAAAAACTGGACATTCTTTTTCTAACGTCAGCATTTCATAAGGGTTACATGGCCA
*
84114002 AGGCACATGCCCGTGTACTAGACCGTGCTCTTCACACGGCAAAGACAAACGGTTGTGTCTCTGCC
196 AGGCACATGCCCGTGTACTAGACCGTGCTCTTCACACAGCAAAGACAAACGGTTGTGTCTCTGCC
* *
84114067 CGTGTGTTTACTATTATGCATAATGACTTGAAATTTTTATGTACAGGGGAGACACAGCTGGACA
261 CGTGTGTTTACTATCATGCATAATGACTTGAAATTTTTATGTACAGGGGAGACAAAGCTGGACA
84114131 ACACGCCCATGTTCTCCACCTGTGTGGAATTAATTGTAAATGCACACCTACAGGGGTTTTCACAC
1 ACACGCCCATGTTCTCCACCTGTGTGGAATTAATTGTAAATGCACACCTACAGGGGTTTTCACAC
*
84114196 GGCCTGGCACACGCCCGTGTTTCTGGCCCGTGTCCTTCACATGGCCATGACACGCTCGTGTCCTA
66 GGCCTGGCACACGCCCGTGTTTCTAGCCCGTGTCCTTCACATGGCCATGACACGCTCGTGTCCTA
*
84114261 GCCCATGTGCAAAAAACTGGACATTCTTTTTCTAACGTTAGCATTTCATAAGGGTTACATGGCCA
131 GCCCATGTGCAAAAAACTGGACATTCTTTTTCTAACGTCAGCATTTCATAAGGGTTACATGGCCA
*
84114326 AGGCACATGCCCGTGTGCTAGACCGTGCTCTTCACACAGCAAAGACAAACGGTTGTGTCTCTGCC
196 AGGCACATGCCCGTGTACTAGACCGTGCTCTTCACACAGCAAAGACAAACGGTTGTGTCTCTGCC
*
84114391 CGTGTGTTTATTATCATGCATAATGACTTGAAATTTTTATGTACAGGGGAGACAAAGCTGGACA
261 CGTGTGTTTACTATCATGCATAATGACTTGAAATTTTTATGTACAGGGGAGACAAAGCTGGACA
84114455 ACACGCCCATG
1 ACACGCCCATG
84114466 GTGCTGGCTG
Statistics
Matches: 325, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
324 325 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.27
Consensus pattern (324 bp):
ACACGCCCATGTTCTCCACCTGTGTGGAATTAATTGTAAATGCACACCTACAGGGGTTTTCACAC
GGCCTGGCACACGCCCGTGTTTCTAGCCCGTGTCCTTCACATGGCCATGACACGCTCGTGTCCTA
GCCCATGTGCAAAAAACTGGACATTCTTTTTCTAACGTCAGCATTTCATAAGGGTTACATGGCCA
AGGCACATGCCCGTGTACTAGACCGTGCTCTTCACACAGCAAAGACAAACGGTTGTGTCTCTGCC
CGTGTGTTTACTATCATGCATAATGACTTGAAATTTTTATGTACAGGGGAGACAAAGCTGGACA
Found at i:84115337 original size:46 final size:46
Alignment explanation
Indices: 84115256--84115372 Score: 130
Period size: 46 Copynumber: 2.5 Consensus size: 46
84115246 AGTTGAAGCC
84115256 ATGTCCCAGACATGGTCTTACACTAATTACCATCTCGTA-GCCAACGA
1 ATGTCCCAGACAT-GTCTTACACTAATTACCATCTCG-AGGCCAACGA
* ** * * *
84115303 ATGTCCCAGACATGTCTTACATTGGCTTA-CATCTCGAGGCCGATGC
1 ATGTCCCAGACATGTCTTACACT-AATTACCATCTCGAGGCCAACGA
*
84115349 ATGTCCCGGACATGTCTTACACTA
1 ATGTCCCAGACATGTCTTACACTA
84115373 GCACTCGTCT
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
45 1 0.02
46 42 0.71
47 16 0.27
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (46 bp):
ATGTCCCAGACATGTCTTACACTAATTACCATCTCGAGGCCAACGA
Found at i:84117222 original size:21 final size:23
Alignment explanation
Indices: 84117187--84117232 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
84117177 CAAATGTGTT
84117187 AAAATCATTAATTAAAA-ATTAA
1 AAAATCATTAATTAAAATATTAA
*
84117209 AAAATCATT-TTTAAAATATTAA
1 AAAATCATTAATTAAAATATTAA
84117231 AA
1 AA
84117233 CTGTGTTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (23 bp):
AAAATCATTAATTAAAATATTAA
Found at i:84118880 original size:13 final size:14
Alignment explanation
Indices: 84118862--84118890 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
84118852 GTTAATGTGA
84118862 AAAATAAAA-AAAT
1 AAAATAAAATAAAT
84118875 AAAATAAAATAAAT
1 AAAATAAAATAAAT
84118889 AA
1 AA
84118891 CACACAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (14 bp):
AAAATAAAATAAAT
Found at i:84123964 original size:22 final size:22
Alignment explanation
Indices: 84123939--84123989 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
84123929 TTTGGAGGAT
*
84123939 AATTTTGACCCTCAACATTAAA
1 AATTTAGACCCTCAACATTAAA
* *
84123961 AATTTAGTCCCTCAACATTATA
1 AATTTAGACCCTCAACATTAAA
84123983 AATTTAG
1 AATTTAG
84123990 TAAAAGTGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.39, C:0.20, G:0.06, T:0.35
Consensus pattern (22 bp):
AATTTAGACCCTCAACATTAAA
Found at i:84123990 original size:22 final size:22
Alignment explanation
Indices: 84123947--84123990 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
84123937 ATAATTTTGA
84123947 CCCTCAACATTAAAAATTTAGT
1 CCCTCAACATTAAAAATTTAGT
*
84123969 CCCTCAACATTATAAATTTAGT
1 CCCTCAACATTAAAAATTTAGT
84123991 AAAAGTGCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.39, C:0.23, G:0.05, T:0.34
Consensus pattern (22 bp):
CCCTCAACATTAAAAATTTAGT
Found at i:84126324 original size:88 final size:88
Alignment explanation
Indices: 84126175--84126350 Score: 298
Period size: 88 Copynumber: 2.0 Consensus size: 88
84126165 ATAAAGCTAA
*
84126175 CATATACTCTCACATACAATTACACTCAACTCGTATATATATAATTCATTTAACGATAATTCATC
1 CATATACTCTCACATACAATTACACTCAACTCGTATATATATAATTCATTTAACAATAATTCATC
84126240 AAGATAAAACAACGTATTCATGC
66 AAGATAAAACAACGTATTCATGC
* * * *
84126263 CATATACTCTCACATGCAATTACACTCTACTCGTATATATATAGTTCATTTAACAATAATTCATG
1 CATATACTCTCACATACAATTACACTCAACTCGTATATATATAATTCATTTAACAATAATTCATC
*
84126328 AAGATAAAACAATGTATTCATGC
66 AAGATAAAACAACGTATTCATGC
84126351 TTTAATGACC
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 82 1.00
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (88 bp):
CATATACTCTCACATACAATTACACTCAACTCGTATATATATAATTCATTTAACAATAATTCATC
AAGATAAAACAACGTATTCATGC
Found at i:84127931 original size:6 final size:6
Alignment explanation
Indices: 84127922--84127972 Score: 52
Period size: 6 Copynumber: 8.8 Consensus size: 6
84127912 AAGAAATGGG
* * * *
84127922 GAAGGA GAA-GA GAAAGA GAA-GA GAAGAA GAAGAA GAAGGA GGAGGA
1 GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA
84127968 GAAGG
1 GAAGG
84127973 CGGCATTACT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
5 10 0.26
6 29 0.74
ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00
Consensus pattern (6 bp):
GAAGGA
Found at i:84128003 original size:6 final size:6
Alignment explanation
Indices: 84127987--84128022 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
84127977 ATTACTGAGG
*
84127987 AAAGAAA AAAGAA AAAGAA AAAGAG AAAGAA AAAGA
1 AAAG-AA AAAGAA AAAGAA AAAGAA AAAGAA AAAGA
84128023 GAAGGAGAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
6 23 0.85
7 4 0.15
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:84128017 original size:18 final size:18
Alignment explanation
Indices: 84127994--84128040 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
84127984 AGGAAAGAAA
84127994 AAAGAAAAAGAAAAAGAG
1 AAAGAAAAAGAAAAAGAG
* *
84128012 AAAGAAAAAGAGAAGGAG
1 AAAGAAAAAGAAAAAGAG
*
84128030 -AAGAAGAAGAA
1 AAAGAAAAAGAA
84128041 GAGGGAGAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
17 9 0.36
18 16 0.64
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (18 bp):
AAAGAAAAAGAAAAAGAG
Found at i:84128023 original size:12 final size:12
Alignment explanation
Indices: 84127986--84128025 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
84127976 CATTACTGAG
84127986 GAAAGAAAAAAGA
1 GAAAG-AAAAAGA
*
84127999 AAAAGAAAAAGA
1 GAAAGAAAAAGA
84128011 GAAAGAAAAAGA
1 GAAAGAAAAAGA
84128023 GAA
1 GAA
84128026 GGAGAAGAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 21 0.84
13 4 0.16
ACGTcount: A:0.78, C:0.00, G:0.23, T:0.00
Consensus pattern (12 bp):
GAAAGAAAAAGA
Found at i:84128124 original size:27 final size:27
Alignment explanation
Indices: 84128071--84128126 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
84128061 GGTAATTTTT
*
84128071 TTTAAGGAAATAATTTTTAATTGTTAA
1 TTTAAGGAAATAATTTTTAATTATTAA
84128098 TTTAAGGAAATAAATTATTT-A-TATTAA
1 TTTAAGGAAAT-AATT-TTTAATTATTAA
84128125 TT
1 TT
84128127 GTTAATGTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 18 0.69
28 5 0.19
29 3 0.12
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48
Consensus pattern (27 bp):
TTTAAGGAAATAATTTTTAATTATTAA
Found at i:84128501 original size:14 final size:14
Alignment explanation
Indices: 84128482--84128510 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
84128472 AGCTTAATAG
84128482 TATATTTTAAAAAA
1 TATATTTTAAAAAA
84128496 TATATTTTAAAAAA
1 TATATTTTAAAAAA
84128510 T
1 T
84128511 CTGAAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
TATATTTTAAAAAA
Found at i:84129137 original size:434 final size:436
Alignment explanation
Indices: 84128506--84129401 Score: 1412
Period size: 434 Copynumber: 2.0 Consensus size: 436
84128496 TATATTTTAA
* *
84128506 AAAATCTGAAAATAAAATAAAAAAAGACCAAAATCAGAGTTTTTTACTAAATTAATATAAATATA
1 AAAATCCGAAAATAAAATAAAAAAAGACCAAAATCAGAGTTTTTTACTAAATTAATATAAATAAA
*
84128571 CTAAAATAATACATATGAAACATTATGTACTAAAATATTATAAAAAAATAAAATACGAAAATAGT
66 CTAAAATAATACATATGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAATAGT
* * *
84128636 ATATTTTGAAAAATAAAATCTAAAAATAAAATAAAAAAACAAACGGCCAAAAGCAGAGTTCTTAC
131 ATATTTTAAAAAATAAAATCCAAAAATAAAAT-AAAAAACAAACGGCCAAAAGCAAAGTTCTTAC
84128701 TAAATTAATATAAAAAAACTAAAATAATACATTTGAAAAATTATGTACTAAAATAATATAAAAAA
195 TAAATTAATATAAAAAAACTAAAATAATACATTTGAAAAATTATGTACTAAAATAATATAAAAAA
*
84128766 TAAAATACGAAAATAGTATATTTTAAAAAATAAAATCTAAAAATAAAAT-AAAAAAC-TG-CCAA
260 TAAAATACAAAAATAGTATATTTTAAAAAATAAAATCTAAAAATAAAATAAAAAAACATGACCAA
*
84128828 AATCACAGATTTTTACTAAATTAATAT-AAAAA-ACTAAAATAATACA-TGAAACATTATGTACT
325 AATCACAGATTTTTACTAAATTAATATAAAAAATACAAAAATAATACATTGAAACATTATGTACT
84128890 AAAATAATATAAAAAAATAAAATACGAAAATAATATATTTTAAAAAAT
390 AAAATAATAT-AAAAAATAAAATACGAAAATAATATATTTTAAAAAAT
* * *
84128938 AAAATCCGAAAATAAAAATAAAAAAGGGCCAAAATCAGAGTTTTTTTTCTAAATTAATATAAA-A
1 AAAATCCGAAAAT-AAAATAAAAAAAGACCAAAATCAGAG-TTTTTTACTAAATTAATATAAATA
*
84129002 AACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAAATAAAATACGAAAAT
64 AACTAAAATAATACATATGAAACATTATGTACTAAAATAATAT-AAAAAAATAAAATACGAAAAT
* * * * *
84129067 AGTATATTTTAAAAAATAAAATCCGAAAATAAAAT-AAAAATAAATGGCCAAAATCAAAGGTTTT
128 AGTATATTTTAAAAAATAAAATCCAAAAATAAAATAAAAAACAAACGGCCAAAAGCAAA-G-TTC
*
84129131 TTACTAAATTAATATAAAAAAACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAA
191 TTACTAAATTAATATAAAAAAACTAAAATAATACATTTGAAAAATTATGTACTAAAATAATATAA
* *
84129196 AAAATAAAATACAAAAATAGTATATTTTAAAAAGTAAAATCTGAAAATAAAATAAAAAAACAAAT
256 AAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATCTAAAAATAAAATAAAAAAAC--AT
* *
84129261 GACCAAAATCATAGTTTTTTACTAAATTAATATAAAAAAATACAAAAATAATACATTTGAAACAT
319 GACCAAAATCACAGATTTTTACTAAATTAATAT-AAAAAATACAAAAATAATACA-TTGAAACAT
* * *
84129326 TATGTACTAAAATAATATAAAAATTATAATACGAAAATAGTATATTTTAAAAAAT
382 TATGTACTAAAATAATATAAAAAATAAAATACGAAAATAATATATTTTAAAAAAT
84129381 AAAATCCGAAAATAAAATAAA
1 AAAATCCGAAAATAAAATAAA
84129402 TACCAAAATA
Statistics
Matches: 424, Mismatches: 25, Indels: 20
0.90 0.05 0.04
Matches are distributed among these distances:
432 31 0.07
433 66 0.16
434 190 0.45
435 7 0.02
438 2 0.00
439 29 0.07
441 5 0.01
442 21 0.05
443 47 0.11
444 26 0.06
ACGTcount: A:0.59, C:0.08, G:0.06, T:0.27
Consensus pattern (436 bp):
AAAATCCGAAAATAAAATAAAAAAAGACCAAAATCAGAGTTTTTTACTAAATTAATATAAATAAA
CTAAAATAATACATATGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAATAGT
ATATTTTAAAAAATAAAATCCAAAAATAAAATAAAAAACAAACGGCCAAAAGCAAAGTTCTTACT
AAATTAATATAAAAAAACTAAAATAATACATTTGAAAAATTATGTACTAAAATAATATAAAAAAT
AAAATACAAAAATAGTATATTTTAAAAAATAAAATCTAAAAATAAAATAAAAAAACATGACCAAA
ATCACAGATTTTTACTAAATTAATATAAAAAATACAAAAATAATACATTGAAACATTATGTACTA
AAATAATATAAAAAATAAAATACGAAAATAATATATTTTAAAAAAT
Found at i:84129245 original size:147 final size:146
Alignment explanation
Indices: 84128506--84129401 Score: 1323
Period size: 148 Copynumber: 6.1 Consensus size: 146
84128496 TATATTTTAA
* *
84128506 AAAATCTGAAAATAAAAT-AAAAAAA-GACCAAAATCAGAGTTTTTTACTAAATTAATATAAATA
1 AAAATCTGAAAATAAAATAAAAAAAATGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAA
* * *
84128569 TACTAAAATAATACATATGAAACATTATGTACTAAAATATTATAAAAAAATAAAATACGAAAATA
66 AACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAATA
*
84128634 GTATATTTTGAAAAAT
131 GTATATTTTAAAAAAT
* * * *
84128650 AAAATCTAAAAATAAAATAAAAAAACAAACGGCCAAAAGCAGAG-TTCTTACTAAATTAATATAA
1 AAAATCTGAAAATAAAAT--AAAAA-AAATGGCCAAAATCAGAGTTTTTTACTAAATTAATATAA
*
84128714 AAAAACTAAAATAATACATTTGAAAAATTATGTACTAAAATAATAT-AAAAAATAAAATACGAAA
63 AAAAACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAA
84128778 ATAGTATATTTTAAAAAAT
128 ATAGTATATTTTAAAAAAT
* * * *
84128797 AAAATCTAAAAATAAAAT-AAAAAACT-GCCAAAATCACAGATTTTTACTAAATTAATAT-AAAA
1 AAAATCTGAAAATAAAATAAAAAAAATGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAA
84128859 AACTAAAATAATACA--TGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAATA
66 AACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAATA
*
84128922 ATATATTTTAAAAAAT
131 GTATATTTTAAAAAAT
* * * *
84128938 AAAATCCGAAAATAAAA-ATAAAAAAGGGCCAAAATCAGAGTTTTTTTTCTAAATTAATAT-AAA
1 AAAATCTGAAAATAAAATAAAAAAAATGGCCAAAATCAGAG-TTTTTTACTAAATTAATATAAAA
84129001 AAACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAAATAAAATACGAAAA
65 AAACTAAAATAATACATTTGAAACATTATGTACTAAAATAATAT-AAAAAAATAAAATACGAAAA
84129066 TAGTATATTTTAAAAAAT
129 TAGTATATTTTAAAAAAT
* *
84129084 AAAATCCGAAAATAAAATAAAAATAAATGGCCAAAATCAAAGGTTTTTTACTAAATTAATATAAA
1 AAAATCTGAAAATAAAATAAAAA-AAATGGCCAAAATCAGA-GTTTTTTACTAAATTAATATAAA
*
84129149 AAAACTAAAATAATACATTTGAAACATTATGTACTAAAATAATAT-AAAAAATAAAATACAAAAA
64 AAAACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAA
*
84129213 TAGTATATTTTAAAAAGT
129 TAGTATATTTTAAAAAAT
* *
84129231 AAAATCTGAAAATAAAATAAAAAAACAAATGACCAAAATCATAGTTTTTTACTAAATTAATATAA
1 AAAATCTGAAAATAAAAT--AAAAA-AAATGGCCAAAATCAGAGTTTTTTACTAAATTAATAT-A
* * *
84129296 AAAAATACAAAAATAATACATTTGAAACATTATGTACTAAAATAATAT-AAAAATTATAATACGA
62 AAAAA-ACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGA
84129360 AAATAGTATATTTTAAAAAAT
126 AAATAGTATATTTTAAAAAAT
*
84129381 AAAATCCGAAAATAAAATAAA
1 AAAATCTGAAAATAAAATAAA
84129402 TACCAAAATA
Statistics
Matches: 689, Mismatches: 42, Indels: 38
0.90 0.05 0.05
Matches are distributed among these distances:
140 25 0.04
141 56 0.08
142 42 0.06
143 55 0.08
144 21 0.03
145 26 0.04
146 54 0.08
147 114 0.17
148 119 0.17
149 86 0.12
150 91 0.13
ACGTcount: A:0.59, C:0.08, G:0.06, T:0.27
Consensus pattern (146 bp):
AAAATCTGAAAATAAAATAAAAAAAATGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAA
AACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAATA
GTATATTTTAAAAAAT
Found at i:84135485 original size:39 final size:39
Alignment explanation
Indices: 84135442--84135520 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
84135432 CACACGTGTA
*
84135442 TATATACATATAGCTACATGTTTTATACCCATTATCCTT
1 TATATACATATAGCTACATGCTTTATACCCATTATCCTT
84135481 TATATACATATAGCTACATGCTTTATACCCATTATCCTT
1 TATATACATATAGCTACATGCTTTATACCCATTATCCTT
84135520 T
1 T
84135521 CACATCTTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.30, C:0.22, G:0.05, T:0.43
Consensus pattern (39 bp):
TATATACATATAGCTACATGCTTTATACCCATTATCCTT
Found at i:84136475 original size:132 final size:131
Alignment explanation
Indices: 84136081--84136478 Score: 413
Period size: 131 Copynumber: 3.0 Consensus size: 131
84136071 ATTATTCATT
* * * * *
84136081 TAAAAAC-CTTTCAAAACAAAGGCAACGTTCGATGTTTGGCAATCCGCGGAATCGTGTCCTATCG
1 TAAAAACTCTTT-AAAACGAAGGAAATGTTCGATGTTTGGCAATTCGAGGAATCGTG-CCTATCG
* * * * ** *
84136145 TGCTGGATTGCAATTTCTCGTTAGCTCAAAATAATCGAACGTCCCTTTAGAATTTCACTCATGGT
64 TGCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAACATCCCTTCGGAATTTCACTCATGTT
*
84136210 TCC
129 TTC
* * *
84136213 TAAAAACTCTTTGAAACGAAGGAAATGTTCGATGTTTGGCGATTTGA-GAATCGTGCCCTATCGT
1 TAAAAACTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGAGGAATCGTG-CCTATCGT
** * * * * * * * * *
84136277 GCTGGGTTGCGCTTTTTCATTTGTTCAAAACAATTGAAGATTCCTTCGAAATTTTACTCACGTTT
65 GCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAACATCCCTTCGGAATTTCACTCATGTTT
84136342 TC
130 TC
* * *
84136344 TAAAAACTCTTTAAAACGAGGGAAATGTTCAATGTTTGGCAATTCGAGGAATAGTGCCTTATCGT
1 TAAAAACTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGAGGAATCGTGCC-TATCGT
* * * * * * *
84136409 GCTGGGTTACAATCTCCCGTTTTTTCAAAATAATCGAATATCCCTTCGGAATTTCACTCGTATTT
65 GCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAACATCCCTTCGGAATTTCACTCATGTTT
84136474 TC
130 TC
84136476 TAA
1 TAA
84136479 GGCGAGGCAA
Statistics
Matches: 212, Mismatches: 51, Indels: 6
0.79 0.19 0.02
Matches are distributed among these distances:
131 108 0.51
132 100 0.47
133 4 0.02
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (131 bp):
TAAAAACTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGAGGAATCGTGCCTATCGTG
CTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAACATCCCTTCGGAATTTCACTCATGTTTT
C
Found at i:84139320 original size:27 final size:27
Alignment explanation
Indices: 84139290--84139344 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
84139280 GAGAAAGGCA
*
84139290 CCACTGGTACCGCCTGTGGGGTACCCT
1 CCACTGGTACCGCCTATGGGGTACCCT
*
84139317 CCACTGGTGCCGCCTATGGGGTACCCT
1 CCACTGGTACCGCCTATGGGGTACCCT
84139344 C
1 C
84139345 AACTAATATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.11, C:0.38, G:0.29, T:0.22
Consensus pattern (27 bp):
CCACTGGTACCGCCTATGGGGTACCCT
Found at i:84139579 original size:25 final size:27
Alignment explanation
Indices: 84139551--84139600 Score: 77
Period size: 25 Copynumber: 1.9 Consensus size: 27
84139541 ATGGTATTCT
*
84139551 TTTTGTTTTTGGCTT-TT-TCTTTTGG
1 TTTTCTTTTTGGCTTCTTCTCTTTTGG
84139576 TTTTCTTTTTGGCTTCTTCTCTTTT
1 TTTTCTTTTTGGCTTCTTCTCTTTT
84139601 CTTTTTGGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 14 0.64
26 2 0.09
27 6 0.27
ACGTcount: A:0.00, C:0.14, G:0.14, T:0.72
Consensus pattern (27 bp):
TTTTCTTTTTGGCTTCTTCTCTTTTGG
Found at i:84143727 original size:21 final size:22
Alignment explanation
Indices: 84143672--84143727 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
84143662 GCCTATTCCT
*
84143672 ACGGCCATGT-CCCTAGTCCAC
1 ACGGCCATGTGCCTTAGTCCAC
* *
84143693 ACGGGCGTGTGCCTTAGT-CAC
1 ACGGCCATGTGCCTTAGTCCAC
*
84143714 ATGGCCATGTGCCT
1 ACGGCCATGTGCCT
84143728 CTCTTTACAC
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
21 22 0.79
22 6 0.21
ACGTcount: A:0.16, C:0.34, G:0.27, T:0.23
Consensus pattern (22 bp):
ACGGCCATGTGCCTTAGTCCAC
Found at i:84152738 original size:40 final size:40
Alignment explanation
Indices: 84152679--84152860 Score: 251
Period size: 40 Copynumber: 4.6 Consensus size: 40
84152669 TATTCAGATG
* *
84152679 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
84152719 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
84152759 ATAACCGGGCTAAGTCCCGAAGTCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
84152799 ATAACTGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
84152839 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
84152861 TACTTGGTTT
Statistics
Matches: 129, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 16 0.12
40 113 0.88
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:84162974 original size:28 final size:28
Alignment explanation
Indices: 84162934--84162990 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
84162924 TTCAGAAGTT
84162934 AGAGGCTGAGAAGTTATGAAAAGGGAAA
1 AGAGGCTGAGAAGTTATGAAAAGGGAAA
84162962 AGAGGCTGAGAAGTTATGAAAAGGGAAA
1 AGAGGCTGAGAAGTTATGAAAAGGGAAA
84162990 A
1 A
84162991 TTAAGGCCGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.47, C:0.04, G:0.35, T:0.14
Consensus pattern (28 bp):
AGAGGCTGAGAAGTTATGAAAAGGGAAA
Found at i:84175576 original size:34 final size:34
Alignment explanation
Indices: 84175546--84175615 Score: 97
Period size: 34 Copynumber: 2.1 Consensus size: 34
84175536 AGTATATGTG
* *
84175546 ATATACATA-ATAGGTTTGAAAGGAAATATATAT
1 ATATACATAGATAGATTTAAAAGGAAATATATAT
* *
84175579 ATATAGATAGATAGATTTAAAAGGAAAAATATAT
1 ATATACATAGATAGATTTAAAAGGAAATATATAT
84175613 ATA
1 ATA
84175616 AAACAACATG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
33 8 0.25
34 24 0.75
ACGTcount: A:0.53, C:0.01, G:0.14, T:0.31
Consensus pattern (34 bp):
ATATACATAGATAGATTTAAAAGGAAATATATAT
Found at i:84178923 original size:22 final size:22
Alignment explanation
Indices: 84178897--84178943 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
84178887 TGTTTCAGTT
84178897 AACAGTGCTTTTAAATTTTCAA
1 AACAGTGCTTTTAAATTTTCAA
*
84178919 AACAGTGCTTTTAACTTTTCAA
1 AACAGTGCTTTTAAATTTTCAA
84178941 AAC
1 AAC
84178944 TCTGTTGGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.38
Consensus pattern (22 bp):
AACAGTGCTTTTAAATTTTCAA
Found at i:84186390 original size:14 final size:14
Alignment explanation
Indices: 84186371--84186398 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
84186361 ATTAGGCAAG
84186371 CTTAGTCTTTGAAT
1 CTTAGTCTTTGAAT
84186385 CTTAGTCTTTGAAT
1 CTTAGTCTTTGAAT
84186399 TTAAGGTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.14, T:0.50
Consensus pattern (14 bp):
CTTAGTCTTTGAAT
Found at i:84189932 original size:8 final size:8
Alignment explanation
Indices: 84189916--84189950 Score: 61
Period size: 8 Copynumber: 4.2 Consensus size: 8
84189906 CTATTTATTT
84189916 TTTTAAAAA
1 TTTT-AAAA
84189925 TTTTAAAA
1 TTTTAAAA
84189933 TTTTAAAA
1 TTTTAAAA
84189941 TTTTAAAA
1 TTTTAAAA
84189949 TT
1 TT
84189951 AAAATATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 22 0.85
9 4 0.15
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (8 bp):
TTTTAAAA
Found at i:84190001 original size:15 final size:17
Alignment explanation
Indices: 84189980--84190020 Score: 59
Period size: 15 Copynumber: 2.5 Consensus size: 17
84189970 TAATCCTTTA
84189980 AAAATTATAAAAATA-T
1 AAAATTATAAAAATAGT
*
84189996 -AAATTATTAAAATAGT
1 AAAATTATAAAAATAGT
84190012 AAAATTATA
1 AAAATTATA
84190021 TTTTATTATC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 13 0.62
16 1 0.05
17 7 0.33
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (17 bp):
AAAATTATAAAAATAGT
Found at i:84190867 original size:22 final size:24
Alignment explanation
Indices: 84190824--84190871 Score: 64
Period size: 22 Copynumber: 2.0 Consensus size: 24
84190814 TATTAAAATA
84190824 AAATATCATCATAATCAATTTCATT
1 AAATATCAT-ATAATCAATTTCATT
*
84190849 AAATATCAT-TAA-CATTTTCATT
1 AAATATCATATAATCAATTTCATT
84190871 A
1 A
84190872 CAAAATCTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 10 0.45
23 3 0.14
25 9 0.41
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.42
Consensus pattern (24 bp):
AAATATCATATAATCAATTTCATT
Found at i:84201446 original size:12 final size:12
Alignment explanation
Indices: 84201429--84201453 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
84201419 TAATTAAATG
84201429 AATTAAAAGCCA
1 AATTAAAAGCCA
84201441 AATTAAAAGCCA
1 AATTAAAAGCCA
84201453 A
1 A
84201454 TTTTTTTCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AATTAAAAGCCA
Found at i:84218793 original size:93 final size:91
Alignment explanation
Indices: 84218629--84218797 Score: 293
Period size: 93 Copynumber: 1.8 Consensus size: 91
84218619 CGCCCTAAGT
*
84218629 GAACTCGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
1 GAACTCGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
84218694 AGTTCGGATGCCTAGTTACATTTCAC
66 AGTTCGGATGCCTAGTTACATTTCAC
*
84218720 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTC-GACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
84218785 TGAGTTCGGATGC
64 CGAGTTCGGATGC
84218798 TCAACCATCC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 6 0.08
92 20 0.27
93 47 0.64
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (91 bp):
GAACTCGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATTTCAC
Found at i:84218813 original size:46 final size:43
Alignment explanation
Indices: 84218626--84218805 Score: 141
Period size: 47 Copynumber: 4.0 Consensus size: 43
84218616 ACCCGCCCTA
* * * * *
84218626 AGTGAACTC-GACTCAACTCAACGAGCTCGGCGTTCGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGC-CAACCATT
84218670 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATTT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCA-TT
* * * *
84218717 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATT
*
84218763 AGTGAACTCGGACTCAACTCAATGAGTTCGGATGCTCAACCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT
84218806 CCTAGTGACA
Statistics
Matches: 110, Mismatches: 14, Indels: 24
0.74 0.09 0.16
Matches are distributed among these distances:
43 1 0.01
44 21 0.19
45 21 0.19
46 30 0.27
47 31 0.28
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (43 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATT
Found at i:84226265 original size:46 final size:46
Alignment explanation
Indices: 84226198--84226368 Score: 209
Period size: 46 Copynumber: 3.7 Consensus size: 46
84226188 CGCGCCTAAG
* *
84226198 TGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAA
* * * * **
84226244 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACATTTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATG-TTCGCATCCA-TAAA
* ** *
84226291 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAA
84226337 TGAACTCGGACTCAACTCAACGAGTTCGGATG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATG
84226369 CTCAACCATC
Statistics
Matches: 101, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
46 65 0.64
47 36 0.36
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAA
Done.