Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 262 of 290
Found at i:84587722 original size:15 final size:15
Alignment explanation
Indices: 84587687--84587738 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
84587677 TTAAGAATTT
*
84587687 TATTAAATTAT-ATA
1 TATTTAATTATAATA
84587701 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
84587715 TATTTAATAATAAT-
1 TATTTAATTATAATA
84587729 TATGTTAATT
1 TAT-TTAATT
84587739 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:84587851 original size:120 final size:120
Alignment explanation
Indices: 84587487--84587854 Score: 598
Period size: 120 Copynumber: 3.1 Consensus size: 120
84587477 TTCAAATTTT
* * * *
84587487 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAATG-ATAT
1 ATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA-GAATAT
* * * * *
84587551 TTACTATTAATAATTTTATTAAATTATATATTTTTATTA-AATTATATTTAAAAATA
65 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAA-TATATTTAATAATA
84587607 ATTAAT-TTAATTTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATAT
1 ATT-ATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATAT
84587671 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATA
65 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATA
84587727 ATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATT
1 ATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATT
*
84587792 AATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAGTA
66 AATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATA
84587847 ATTATGTT
1 ATTATGTT
84587855 TAAATATGAT
Statistics
Matches: 235, Mismatches: 9, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
119 3 0.01
120 228 0.97
121 4 0.02
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (120 bp):
ATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATT
AATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATA
Found at i:84588112 original size:16 final size:16
Alignment explanation
Indices: 84588071--84588124 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
84588061 TTGATTTGCT
* *
84588071 ATTACACATCTAATCC
1 ATTACACCTCTATTCC
84588087 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
84588103 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
*
84588119 AATACA
1 ATTACA
84588125 GCGAACCAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.31, C:0.33, G:0.02, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:84593144 original size:21 final size:21
Alignment explanation
Indices: 84593112--84593152 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
84593102 GAACATTTGG
84593112 TGTATAGGCTAAGAA-AGGCCT
1 TGTATAGGCTAA-AACAGGCCT
84593133 TGTAT-GGCCTAAAACAGGCC
1 TGTATAGG-CTAAAACAGGCC
84593153 CCTCGAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (21 bp):
TGTATAGGCTAAAACAGGCCT
Found at i:84598910 original size:26 final size:26
Alignment explanation
Indices: 84598881--84598931 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
84598871 TCTCATCCCT
**
84598881 ATTTTACCTTTAGTAAAATGTTGATG
1 ATTTTACCCCTAGTAAAATGTTGATG
*
84598907 ATTTTACCCCTAGTAAAATTTTGAT
1 ATTTTACCCCTAGTAAAATGTTGAT
84598932 AAAATATGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.45
Consensus pattern (26 bp):
ATTTTACCCCTAGTAAAATGTTGATG
Found at i:84607636 original size:20 final size:20
Alignment explanation
Indices: 84607595--84607639 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
84607585 AGCACATGTA
* *
84607595 TTCATAAATTTTCAGAATTT
1 TTCATAAATTTTCACAACTT
84607615 TTCATCAAATTTT-ACAACTT
1 TTCAT-AAATTTTCACAACTT
84607635 TTCAT
1 TTCAT
84607640 TTTGGTTTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.33, C:0.16, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAATTTTCACAACTT
Found at i:84616003 original size:27 final size:26
Alignment explanation
Indices: 84615985--84616054 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
84615975 ATATTAAGTC
84615985 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
84616012 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
84616040 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
84616055 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:84616048 original size:28 final size:28
Alignment explanation
Indices: 84615985--84616082 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
84615975 ATATTAAGTC
*
84615985 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
84616012 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
84616040 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
84616069 CGCACACTTAGTGC
1 CGCACACTTAGTGC
84616083 CAATCTCAGG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:84621061 original size:30 final size:30
Alignment explanation
Indices: 84621006--84621063 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
84620996 CAAGCACTTC
* *
84621006 CACACGGGTAAACCATAGGCCCGTGTGAGG
1 CACACGGGCAAACCACAGGCCCGTGTGAGG
* *
84621036 CACACGGGCAAACCACATGCTCGTGTGA
1 CACACGGGCAAACCACAGGCCCGTGTGA
84621064 CATGGCCCTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.28, C:0.29, G:0.29, T:0.14
Consensus pattern (30 bp):
CACACGGGCAAACCACAGGCCCGTGTGAGG
Found at i:84627357 original size:15 final size:16
Alignment explanation
Indices: 84627331--84627365 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
84627321 TAATTTATTC
*
84627331 AATTTATTTTAATTTT
1 AATTTATTTTAAATTT
84627347 AATTT-TTTTAAATTT
1 AATTTATTTTAAATTT
84627362 AATT
1 AATT
84627366 GTTACATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
AATTTATTTTAAATTT
Found at i:84627374 original size:29 final size:26
Alignment explanation
Indices: 84627331--84627384 Score: 72
Period size: 29 Copynumber: 2.0 Consensus size: 26
84627321 TAATTTATTC
84627331 AATTTATTTTAATTTTAATTTTTTTA
1 AATTTATTTTAATTTTAATTTTTTTA
*
84627357 AATTTAATTGTTACATTTTACTTTTTTT
1 AATTT-ATT-TTA-ATTTTAATTTTTTT
84627385 TCTTTTTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 5 0.21
27 3 0.12
28 3 0.12
29 13 0.54
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.67
Consensus pattern (26 bp):
AATTTATTTTAATTTTAATTTTTTTA
Found at i:84631815 original size:5 final size:5
Alignment explanation
Indices: 84631805--84631838 Score: 59
Period size: 5 Copynumber: 6.6 Consensus size: 5
84631795 CCATTTAGTT
84631805 TTTTA TTTTA TTTTA TTTTA TTTTTA TTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA -TTTTA TTTTA TTT
84631839 ATTGGACTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 23 0.82
6 5 0.18
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:84631841 original size:15 final size:16
Alignment explanation
Indices: 84631805--84631838 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
84631795 CCATTTAGTT
84631805 TTTTA-TTTTATTTTA
1 TTTTATTTTTATTTTA
84631820 TTTTATTTTTATTTTA
1 TTTTATTTTTATTTTA
84631836 TTT
1 TTT
84631839 ATTGGACTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTTATTTTTATTTTA
Found at i:84631937 original size:8 final size:8
Alignment explanation
Indices: 84631926--84631952 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
84631916 CATCTCTTTA
84631926 TCTTATTT
1 TCTTATTT
84631934 TCTTATTT
1 TCTTATTT
84631942 TCTTATTT
1 TCTTATTT
84631950 TCT
1 TCT
84631953 ATCTTTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.11, C:0.15, G:0.00, T:0.74
Consensus pattern (8 bp):
TCTTATTT
Found at i:84639290 original size:56 final size:56
Alignment explanation
Indices: 84639176--84639282 Score: 205
Period size: 56 Copynumber: 1.9 Consensus size: 56
84639166 ACACGGGCGT
84639176 CACACGCCCGTATGTATTTGGTAGATTTGACCACGACCAGGTTGCACGCCCATAGC
1 CACACGCCCGTATGTATTTGGTAGATTTGACCACGACCAGGTTGCACGCCCATAGC
*
84639232 CACACGCCCGTATGTATTTGGTAGATTTGACCACGGCCAGGTTGCACGCCC
1 CACACGCCCGTATGTATTTGGTAGATTTGACCACGACCAGGTTGCACGCCC
84639283 GTGGCCACTT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.21, C:0.31, G:0.24, T:0.23
Consensus pattern (56 bp):
CACACGCCCGTATGTATTTGGTAGATTTGACCACGACCAGGTTGCACGCCCATAGC
Found at i:84643339 original size:46 final size:46
Alignment explanation
Indices: 84643222--84643344 Score: 180
Period size: 45 Copynumber: 2.7 Consensus size: 46
84643212 TTTGGGCATT
*
84643222 CGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGACTGTC
1 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGACTGTC
*
84643268 CGAG-TCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAAC-G-C
1 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-ACTGTC
*
84643312 CTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTA
1 C-GAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
84643345 AGGGCGGGTT
Statistics
Matches: 70, Mismatches: 4, Indels: 6
0.88 0.05 0.08
Matches are distributed among these distances:
44 2 0.03
45 37 0.53
46 31 0.44
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.31
Consensus pattern (46 bp):
CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGACTGTC
Found at i:84647468 original size:46 final size:46
Alignment explanation
Indices: 84647399--84647523 Score: 189
Period size: 46 Copynumber: 2.7 Consensus size: 46
84647389 TGGGCATCCA
* * * *
84647399 AGCTCGTTAAGTCGAGTCTGAGTTCACTTATGGATGCG-ACTGTCCG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC-GCCCG
84647445 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
*
84647491 AGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84647524 GCGAGTTACA
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
46 71 0.97
47 2 0.03
ACGTcount: A:0.18, C:0.22, G:0.30, T:0.30
Consensus pattern (46 bp):
AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
Found at i:84651915 original size:41 final size:40
Alignment explanation
Indices: 84651836--84652124 Score: 314
Period size: 41 Copynumber: 7.1 Consensus size: 40
84651826 AAAAATTATA
* * * * *
84651836 AAAAACGGAGCAATAGCGGCGTTTTACCAAAAATGCCGCT
1 AAAAACAGAGCATTAGCGGCGTTTTAGCTAAAACGCCGCT
* * *
84651876 AAAAACAGAGCAATAGCGGCGTTTTTTGTTAAAACGCCGCT
1 AAAAACAGAGCATTAGCGGCG-TTTTAGCTAAAACGCCGCT
*
84651917 AAAAACAGTGCATTAGCGGCGTTTTTAG-TAAAACGCCGCT
1 AAAAACAGAGCATTAGCGGCG-TTTTAGCTAAAACGCCGCT
* *
84651957 AAAAACTAGAGCATTAGCGGCGCTTTT-GGTAAAACGCCACT
1 AAAAAC-AGAGCATTAGCGGCG-TTTTAGCTAAAACGCCGCT
* *
84651998 AAAAACCAGAGCATTAGCGGCGTTTTACCAAAAACGCCGCT
1 AAAAA-CAGAGCATTAGCGGCGTTTTAGCTAAAACGCCGCT
*
84652039 AAAAACCAGAGCATTAGCGGCGCTTTT-GGTAAAACGCCGCT
1 AAAAA-CAGAGCATTAGCGGCG-TTTTAGCTAAAACGCCGCT
* * * * *
84652080 AAAAACCAGAGTAGTAGCGGCGCTTTCGATAAAACGCCGCT
1 AAAAA-CAGAGCATTAGCGGCGTTTTAGCTAAAACGCCGCT
84652121 AAAA
1 AAAA
84652125 GTAATATAAT
Statistics
Matches: 219, Mismatches: 23, Indels: 13
0.86 0.09 0.05
Matches are distributed among these distances:
40 46 0.21
41 168 0.77
42 5 0.02
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.20
Consensus pattern (40 bp):
AAAAACAGAGCATTAGCGGCGTTTTAGCTAAAACGCCGCT
Found at i:84652018 original size:82 final size:81
Alignment explanation
Indices: 84651834--84652124 Score: 381
Period size: 82 Copynumber: 3.6 Consensus size: 81
84651824 ACAAAAATTA
* * * * * *
84651834 TAAAAAACGGAGCAATAGCGGCGTTTTACCAAAAATGCCGCTAAAAACAGAGCAATAGCGGCGTT
1 TAAAAACCAGAGCATTAGCGGCGTTTTACCAAAAACGCCGCTAAAAACAGAGCATTAGCGGCG-C
*
84651899 TTTTGTTAAAACGCCGC
65 TTTTGGTAAAACGCCGC
* **
84651916 TAAAAA-CAGTGCATTAGCGGCGTTTTTA-GTAAAACGCCGCTAAAAACTAGAGCATTAGCGGCG
1 TAAAAACCAGAGCATTAGCGGCG-TTTTACCAAAAACGCCGCTAAAAAC-AGAGCATTAGCGGCG
*
84651979 CTTTTGGTAAAACGCCAC
64 CTTTTGGTAAAACGCCGC
84651997 TAAAAACCAGAGCATTAGCGGCGTTTTACCAAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGC
1 TAAAAACCAGAGCATTAGCGGCGTTTTACCAAAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGC
84652062 TTTTGGTAAAACGCCGC
65 TTTTGGTAAAACGCCGC
* * * *
84652079 TAAAAACCAGAGTAGTAGCGGCGCTTT-CGATAAAACGCCGCTAAAA
1 TAAAAACCAGAGCATTAGCGGCGTTTTACCA-AAAACGCCGCTAAAA
84652125 GTAATATAAT
Statistics
Matches: 185, Mismatches: 18, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
81 57 0.31
82 127 0.69
83 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.20
Consensus pattern (81 bp):
TAAAAACCAGAGCATTAGCGGCGTTTTACCAAAAACGCCGCTAAAAACAGAGCATTAGCGGCGCT
TTTGGTAAAACGCCGC
Found at i:84652079 original size:123 final size:122
Alignment explanation
Indices: 84651834--84652124 Score: 361
Period size: 123 Copynumber: 2.4 Consensus size: 122
84651824 ACAAAAATTA
* * * * * *
84651834 TAAAAAACGGAGCAATAGCGGCGTTTTACCA-AAAATGCCGCTAAAAACAGAGCAATAGCGGCGT
1 TAAAAACCAGAGCAGTAGCGGCGCTTT-CGATAAAACGCCGCTAAAAACAGAGCAATAGCGGCGT
**** * *
84651898 TTTTTGTTAAAACGCCGCTAAAAACAGTGCATTAGCGGCGTTTTTAGTAAAACGCCGC
65 TTTTACCAAAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTAGTAAAACGCCGC
* * * * * *
84651956 TAAAAACTAGAGCATTAGCGGCGCTTTTGGTAAAACGCCACTAAAAACCAGAGCATTAGCGGCG-
1 TAAAAACCAGAGCAGTAGCGGCGCTTTCGATAAAACGCCGCTAAAAA-CAGAGCAATAGCGGCGT
*
84652020 TTTTACCAAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
65 TTTTACCAAAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTTAGTAAAACGCCGC
*
84652079 TAAAAACCAGAGTAGTAGCGGCGCTTTCGATAAAACGCCGCTAAAA
1 TAAAAACCAGAGCAGTAGCGGCGCTTTCGATAAAACGCCGCTAAAA
84652125 GTAATATAAT
Statistics
Matches: 142, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
122 56 0.39
123 86 0.61
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.20
Consensus pattern (122 bp):
TAAAAACCAGAGCAGTAGCGGCGCTTTCGATAAAACGCCGCTAAAAACAGAGCAATAGCGGCGTT
TTTACCAAAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTAGTAAAACGCCGC
Found at i:84652659 original size:14 final size:14
Alignment explanation
Indices: 84652621--84652677 Score: 53
Period size: 14 Copynumber: 4.1 Consensus size: 14
84652611 TAAAGGTGGT
84652621 TTAAGGGTT-GGGG
1 TTAAGGGTTAGGGG
** *
84652634 TTTAAGATTTAGGTG
1 -TTAAGGGTTAGGGG
84652649 TTAAGGGTTAGGGG
1 TTAAGGGTTAGGGG
* *
84652663 TTAGGGGTTAAGGG
1 TTAAGGGTTAGGGG
84652677 T
1 T
84652678 GAGGGGTTCA
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
14 31 0.91
15 3 0.09
ACGTcount: A:0.21, C:0.00, G:0.44, T:0.35
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:84652667 original size:21 final size:21
Alignment explanation
Indices: 84652642--84652685 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
84652632 GGTTTAAGAT
* *
84652642 TTAGGTGTTAAGGGTTAGGGG
1 TTAGGGGTTAAGGGTGAGGGG
84652663 TTAGGGGTTAAGGGTGAGGGG
1 TTAGGGGTTAAGGGTGAGGGG
84652684 TT
1 TT
84652686 CATAGTTCAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.18, C:0.00, G:0.50, T:0.32
Consensus pattern (21 bp):
TTAGGGGTTAAGGGTGAGGGG
Found at i:84652684 original size:7 final size:7
Alignment explanation
Indices: 84652642--84652685 Score: 52
Period size: 7 Copynumber: 6.3 Consensus size: 7
84652632 GGTTTAAGAT
*
84652642 TTAGGTG
1 TTAGGGG
*
84652649 TTAAGGG
1 TTAGGGG
84652656 TTAGGGG
1 TTAGGGG
84652663 TTAGGGG
1 TTAGGGG
*
84652670 TTAAGGG
1 TTAGGGG
*
84652677 TGAGGGG
1 TTAGGGG
84652684 TT
1 TT
84652686 CATAGTTCAG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.18, C:0.00, G:0.50, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:84652855 original size:7 final size:7
Alignment explanation
Indices: 84652843--84652868 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
84652833 TATCATTATA
84652843 GTTTAGG
1 GTTTAGG
84652850 GTTTAGG
1 GTTTAGG
84652857 GTTTAGG
1 GTTTAGG
84652864 GTTTA
1 GTTTA
84652869 AAGTGTATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.38, T:0.46
Consensus pattern (7 bp):
GTTTAGG
Found at i:84652910 original size:15 final size:15
Alignment explanation
Indices: 84652892--84652934 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
84652882 ATTATTTTAA
84652892 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
84652907 GGTTTAGGGATTAT-
1 GGTTTATGGATTATG
*
84652921 GATTTATGG-TTATG
1 GGTTTATGGATTATG
84652935 TAAGAGATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
13 4 0.17
14 7 0.29
15 13 0.54
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.47
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:84652912 original size:22 final size:22
Alignment explanation
Indices: 84652887--84652929 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
84652877 GAGTTATTAT
*
84652887 TTTAAGGTTTATGGA-TTATGGG
1 TTTAAGGATTAT-GATTTATGGG
*
84652909 TTTAGGGATTATGATTTATGG
1 TTTAAGGATTATGATTTATGG
84652930 TTATGTAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (22 bp):
TTTAAGGATTATGATTTATGGG
Found at i:84653541 original size:8 final size:8
Alignment explanation
Indices: 84653520--84653575 Score: 55
Period size: 7 Copynumber: 7.2 Consensus size: 8
84653510 AAAATCTTCA
84653520 AAAAAATT
1 AAAAAATT
**
84653528 TTAAAATT
1 AAAAAATT
84653536 AAAAAA-T
1 AAAAAATT
84653543 AAAAAA-T
1 AAAAAATT
84653550 AAAAAA-T
1 AAAAAATT
84653557 AAAAAACTT
1 AAAAAA-TT
*
84653566 AAAAATTT
1 AAAAAATT
84653574 AA
1 AA
84653576 TATTTAATAT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
7 21 0.51
8 14 0.34
9 6 0.15
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (8 bp):
AAAAAATT
Found at i:84653546 original size:6 final size:7
Alignment explanation
Indices: 84653530--84653562 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
84653520 AAAAAATTTT
*
84653530 AAAATTA
1 AAAAATA
84653537 AAAAATA
1 AAAAATA
84653544 AAAAATA
1 AAAAATA
84653551 AAAAATA
1 AAAAATA
84653558 AAAAA
1 AAAAA
84653563 CTTAAAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
AAAAATA
Found at i:84655451 original size:138 final size:138
Alignment explanation
Indices: 84655223--84655474 Score: 468
Period size: 138 Copynumber: 1.8 Consensus size: 138
84655213 GTGGAGTCCC
* *
84655223 TGTTTTGAATTTTAGAATCATATGTAATCTCTTTAAAAATTGGCATTAAATTGTTTTTAGGTTTT
1 TGTTTTGAATTTTAGAACCATATGTAATCTCCTTAAAAATTGGCATTAAATTGTTTTTAGGTTTT
84655288 ATAATAACATTTCTCTTTGTTATGTTATTATGCAACTTATTTGATTTAACGTCTGGATGCTTTTA
66 ATAATAACATTTCTCTTTGTTATGTTATTATGCAACTTATTTGATTTAACGTCTGGATGCTTTTA
84655353 GGATTACT
131 GGATTACT
*
84655361 TGTTTTGAATTTTAGAACCATATGTAATTTCCTTAAAAATTGGCATTAAATTGTTTTTAGGTTTT
1 TGTTTTGAATTTTAGAACCATATGTAATCTCCTTAAAAATTGGCATTAAATTGTTTTTAGGTTTT
*
84655426 ATATTAACATTTCTCTTTGTTATGTTATTATGCAACTTATTTGATTTAA
66 ATAATAACATTTCTCTTTGTTATGTTATTATGCAACTTATTTGATTTAA
84655475 AATTTTAAAA
Statistics
Matches: 110, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
138 110 1.00
ACGTcount: A:0.28, C:0.09, G:0.13, T:0.50
Consensus pattern (138 bp):
TGTTTTGAATTTTAGAACCATATGTAATCTCCTTAAAAATTGGCATTAAATTGTTTTTAGGTTTT
ATAATAACATTTCTCTTTGTTATGTTATTATGCAACTTATTTGATTTAACGTCTGGATGCTTTTA
GGATTACT
Found at i:84656587 original size:43 final size:43
Alignment explanation
Indices: 84656513--84656687 Score: 251
Period size: 43 Copynumber: 4.1 Consensus size: 43
84656503 TTTTTAAATT
* * * * *
84656513 TCATTACCTTTAGCGGTGTTTGTGGGAAAAGCGTCACTAAAGG
1 TCATGACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
* *
84656556 TCAAGACCTCTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGG
1 TCATGACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
* * *
84656599 TCTTGATCTCTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGG
1 TCATGACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
*
84656642 TCTTGACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
1 TCATGACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
84656685 TCA
1 TCA
84656688 CCGCTAAAGG
Statistics
Matches: 119, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 119 1.00
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.25
Consensus pattern (43 bp):
TCATGACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
Found at i:84656693 original size:13 final size:13
Alignment explanation
Indices: 84656675--84656700 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
84656665 GGGAAAAGCG
84656675 CCGCTAAAGGTCA
1 CCGCTAAAGGTCA
84656688 CCGCTAAAGGTCA
1 CCGCTAAAGGTCA
84656701 TGACCTTTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.31, G:0.23, T:0.15
Consensus pattern (13 bp):
CCGCTAAAGGTCA
Found at i:84657554 original size:19 final size:19
Alignment explanation
Indices: 84657520--84657558 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
84657510 AATTTCGTAC
*
84657520 TTTGGCCCATTTTCTCCGTT
1 TTTGGCCCAATTTCT-CGTT
84657540 TTTGG-CCAATTTCTCGTT
1 TTTGGCCCAATTTCTCGTT
84657558 T
1 T
84657559 CTTTCACTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 8 0.44
20 5 0.28
ACGTcount: A:0.08, C:0.26, G:0.15, T:0.51
Consensus pattern (19 bp):
TTTGGCCCAATTTCTCGTT
Found at i:84657808 original size:16 final size:16
Alignment explanation
Indices: 84657782--84657818 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
84657772 TAAACCAAAT
84657782 TTAAT-TAATTAAACC
1 TTAATCTAATTAAACC
*
84657797 TTAATCTAATTAAATC
1 TTAATCTAATTAAACC
84657813 TTAATC
1 TTAATC
84657819 ACATTTAACC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 5 0.25
16 15 0.75
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (16 bp):
TTAATCTAATTAAACC
Found at i:84659361 original size:24 final size:24
Alignment explanation
Indices: 84659333--84659385 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
84659323 TTTCTAGAAG
*
84659333 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGTATAATAT
* *
84659357 ATTTAGCATTTATTAGTATAGTTT
1 ATTTAGCATTTATTAGTATAATAT
84659381 ATTTA
1 ATTTA
84659386 ACTTACTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.34, C:0.02, G:0.09, T:0.55
Consensus pattern (24 bp):
ATTTAGCATTTATTAGTATAATAT
Found at i:84669030 original size:12 final size:12
Alignment explanation
Indices: 84669010--84669046 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
84669000 TTTTTTAGCC
84669010 ATGGATTCCACT
1 ATGGATTCCACT
*
84669022 ATGGGTTCCACT
1 ATGGATTCCACT
*
84669034 GTGGATTCCACT
1 ATGGATTCCACT
84669046 A
1 A
84669047 CCTTTATCTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (12 bp):
ATGGATTCCACT
Found at i:84671139 original size:21 final size:22
Alignment explanation
Indices: 84671114--84671163 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
84671104 ATTTTAATAT
84671114 TTAATTTTTT-TTAACT-TTATA
1 TTAATTTTTTATTAACTATTA-A
*
84671135 TTAATATTTTTATTAATTATTAA
1 TTAAT-TTTTTATTAACTATTAA
84671158 TTAATT
1 TTAATT
84671164 ATATTTAGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 5 0.20
22 6 0.24
23 11 0.44
24 3 0.12
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (22 bp):
TTAATTTTTTATTAACTATTAA
Found at i:84674353 original size:16 final size:16
Alignment explanation
Indices: 84674324--84674357 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
84674314 TAATGTTTTA
* *
84674324 ATTATTTTTTTATCAT
1 ATTATATTTGTATCAT
84674340 ATTATATTTGTATCAT
1 ATTATATTTGTATCAT
84674356 AT
1 AT
84674358 AATTAAATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.62
Consensus pattern (16 bp):
ATTATATTTGTATCAT
Found at i:84675085 original size:17 final size:16
Alignment explanation
Indices: 84675059--84675090 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
84675049 TCTAAGTCTA
84675059 TAATGATTCAAACTTG
1 TAATGATTCAAACTTG
84675075 TAATAGATTCAAACTT
1 TAAT-GATTCAAACTT
84675091 AAAAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.38
Consensus pattern (16 bp):
TAATGATTCAAACTTG
Found at i:84675649 original size:31 final size:31
Alignment explanation
Indices: 84675584--84675650 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
84675574 ACTAAATTAG
* *
84675584 TATATTAATAATACATAAAATAATAATATAA
1 TATATAAATAATACATAAAATAATAATACAA
* *
84675615 TATATAAATATTAC-TAAAATATTAATAC-A
1 TATATAAATAATACATAAAATAATAATACAA
84675644 TATATAA
1 TATATAA
84675651 TTATTATTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 8 0.25
30 12 0.38
31 12 0.38
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.37
Consensus pattern (31 bp):
TATATAAATAATACATAAAATAATAATACAA
Found at i:84675655 original size:29 final size:30
Alignment explanation
Indices: 84675584--84675686 Score: 93
Period size: 29 Copynumber: 3.5 Consensus size: 30
84675574 ACTAAATTAG
* *
84675584 TATATTAATAATACATAAAATAATAATATAA
1 TATATAAATATTAC-TAAAATAATAATATAA
* *
84675615 TATATAAATATTACTAAAATATTAATA-CA
1 TATATAAATATTACTAAAATAATAATATAA
* * * * * *
84675644 TATATAATTATTATTTAGATTATAATAAAA
1 TATATAAATATTACTAAAATAATAATATAA
84675674 TATAT-AATATTAC
1 TATATAAATATTAC
84675687 ATGATATTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
29 28 0.48
30 18 0.31
31 12 0.21
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (30 bp):
TATATAAATATTACTAAAATAATAATATAA
Found at i:84678474 original size:16 final size:17
Alignment explanation
Indices: 84678450--84678483 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
84678440 TATAAAACGT
84678450 ACTACTATTATA-TATA
1 ACTACTATTATATTATA
*
84678466 ACTATTATTATATTATA
1 ACTACTATTATATTATA
84678483 A
1 A
84678484 ATTATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (17 bp):
ACTACTATTATATTATA
Found at i:84678577 original size:5 final size:5
Alignment explanation
Indices: 84678569--84678627 Score: 118
Period size: 5 Copynumber: 11.8 Consensus size: 5
84678559 ATTATATACT
84678569 ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG
1 ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG
84678619 ATATG ATAT
1 ATATG ATAT
84678628 AACATTATAG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 54 1.00
ACGTcount: A:0.41, C:0.00, G:0.19, T:0.41
Consensus pattern (5 bp):
ATATG
Found at i:84679088 original size:24 final size:23
Alignment explanation
Indices: 84679055--84679112 Score: 80
Period size: 24 Copynumber: 2.5 Consensus size: 23
84679045 GCTCGATTCA
*
84679055 TTTAGCGTTCGCAAACATGTTCAT
1 TTTAACGTTCGCAAACATGTTC-T
* *
84679079 TTTAATGTTCGCGAACATGTTCT
1 TTTAACGTTCGCAAACATGTTCT
84679102 TTTAACGTTCG
1 TTTAACGTTCG
84679113 TGAATGTTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
23 11 0.37
24 19 0.63
ACGTcount: A:0.22, C:0.19, G:0.17, T:0.41
Consensus pattern (23 bp):
TTTAACGTTCGCAAACATGTTCT
Found at i:84684053 original size:9 final size:9
Alignment explanation
Indices: 84684025--84684168 Score: 101
Period size: 9 Copynumber: 15.4 Consensus size: 9
84684015 ACATATGACA
*
84684025 AAAAATGAT
1 AAAAATTAT
**
84684034 AAAAAAAAT
1 AAAAATTAT
*
84684043 AAAAGTTAT
1 AAAAATTAT
84684052 AAAAATTAT
1 AAAAATTAT
*
84684061 ATAAATTATT
1 AAAAATTA-T
**
84684071 AAACTTTAAT
1 AAAAATT-AT
84684081 AAAAA-TAT
1 AAAAATTAT
*
84684089 AAAAATATTT
1 AAAAAT-TAT
*
84684099 AAAATTTACT
1 AAAAATTA-T
*
84684109 AAAAATTAG
1 AAAAATTAT
*
84684118 AAAAAATAT
1 AAAAATTAT
*
84684127 AAAAATTGT
1 AAAAATTAT
*
84684136 AAAATTTAAT
1 AAAAATT-AT
*
84684146 AAAAATCAT
1 AAAAATTAT
84684155 AAAAAATTAT
1 -AAAAATTAT
84684165 AAAA
1 AAAA
84684169 TGCATCAAAA
Statistics
Matches: 102, Mismatches: 26, Indels: 14
0.72 0.18 0.10
Matches are distributed among these distances:
8 7 0.07
9 56 0.55
10 38 0.37
11 1 0.01
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.31
Consensus pattern (9 bp):
AAAAATTAT
Found at i:84684073 original size:28 final size:28
Alignment explanation
Indices: 84684025--84684168 Score: 91
Period size: 28 Copynumber: 5.1 Consensus size: 28
84684015 ACATATGACA
* ** *
84684025 AAAAATGATAAAAA-AAATAAAAGTTAT
1 AAAAATTATAAAAATATTTAAAATTTAT
* *
84684052 AAAAATTATATAAAT-TATTAAACTTTAAT
1 AAAAATTATAAAAATAT-TTAAAATTT-AT
84684081 AAAAA-TATAAAAATATTTAAAATTTACT
1 AAAAATTATAAAAATATTTAAAATTTA-T
* * * *
84684109 AAAAATTAGAAAAA-ATATAAAAATTGT
1 AAAAATTATAAAAATATTTAAAATTTAT
* * *
84684136 AAAATTTAATAAAAATCA-TAAAAAATTAT
1 AAAAATT-ATAAAAAT-ATTTAAAATTTAT
84684165 AAAA
1 AAAA
84684169 TGCATCAAAA
Statistics
Matches: 91, Mismatches: 17, Indels: 16
0.73 0.14 0.13
Matches are distributed among these distances:
27 20 0.22
28 43 0.47
29 27 0.30
30 1 0.01
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.31
Consensus pattern (28 bp):
AAAAATTATAAAAATATTTAAAATTTAT
Found at i:84684157 original size:19 final size:19
Alignment explanation
Indices: 84684041--84684158 Score: 66
Period size: 19 Copynumber: 6.3 Consensus size: 19
84684031 GATAAAAAAA
*
84684041 ATAAAAGTT-ATAAAAATT
1 ATAAAATTTAATAAAAATT
* **
84684059 ATATAAA-TTATTAAACTTT
1 ATA-AAATTTAATAAAAATT
*
84684078 AATAAAA-AT-ATAAAAATAT
1 -ATAAAATTTAATAAAAAT-T
* *
84684097 TTAAAATTTACTAAAAATT
1 ATAAAATTTAATAAAAATT
* **
84684116 AGAAAAAAT-ATAAAAATT
1 ATAAAATTTAATAAAAATT
* *
84684134 GTAAAATTTAATAAAAATC
1 ATAAAATTTAATAAAAATT
84684153 ATAAAA
1 ATAAAA
84684159 AATTATAAAA
Statistics
Matches: 72, Mismatches: 21, Indels: 13
0.68 0.20 0.12
Matches are distributed among these distances:
18 28 0.39
19 34 0.47
20 10 0.14
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (19 bp):
ATAAAATTTAATAAAAATT
Found at i:84684169 original size:37 final size:38
Alignment explanation
Indices: 84684081--84684168 Score: 124
Period size: 37 Copynumber: 2.3 Consensus size: 38
84684071 AAACTTTAAT
* * *
84684081 AAAAATATAAAAATATTTAAAATTTACTAAAAATTAGA
1 AAAAATATAAAAATATGTAAAATTTAATAAAAATCAGA
*
84684119 AAAAATATAAAAAT-TGTAAAATTTAATAAAAATCATA
1 AAAAATATAAAAATATGTAAAATTTAATAAAAATCAGA
84684156 AAAAATTATAAAA
1 AAAAA-TATAAAA
84684169 TGCATCAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
37 24 0.53
38 21 0.47
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (38 bp):
AAAAATATAAAAATATGTAAAATTTAATAAAAATCAGA
Found at i:84684363 original size:9 final size:9
Alignment explanation
Indices: 84684349--84684533 Score: 87
Period size: 9 Copynumber: 20.0 Consensus size: 9
84684339 TTTTGGTATG
84684349 ATAATTTTT
1 ATAATTTTT
84684358 ATAATTCTTTT
1 ATAA-T-TTTT
* *
84684369 ACAAATTTT
1 ATAATTTTT
84684378 ATAATTCTTT
1 ATAATT-TTT
84684388 AT-ATTTTT
1 ATAATTTTT
*
84684396 ATCATTTTCTT
1 AT-AATTT-TT
84684407 ATAATTTTAT
1 ATAATTTT-T
* *
84684417 AAAAATTTAT
1 -ATAATTTTT
*
84684427 ATATTTTTT
1 ATAATTTTT
*
84684436 CTACA-TTTT
1 ATA-ATTTTT
84684445 AT-ATTTTT
1 ATAATTTTT
84684453 AT-ATTTTT
1 ATAATTTTT
*
84684461 ACAATTTTT
1 ATAATTTTT
84684470 ATAATATTTTT
1 AT-A-ATTTTT
* *
84684481 CTAGTTTTT
1 ATAATTTTT
*
84684490 AATAA-TTTA
1 -ATAATTTTT
*
84684499 ATAAATTTT
1 ATAATTTTT
*
84684508 ATTGATTTTT
1 A-TAATTTTT
84684518 AT--TTTTT
1 ATAATTTTT
*
84684525 ATCATTTTT
1 ATAATTTTT
84684534 TTGTCACAAC
Statistics
Matches: 134, Mismatches: 24, Indels: 36
0.69 0.12 0.19
Matches are distributed among these distances:
7 8 0.06
8 22 0.16
9 54 0.40
10 26 0.19
11 24 0.18
ACGTcount: A:0.31, C:0.05, G:0.01, T:0.63
Consensus pattern (9 bp):
ATAATTTTT
Found at i:84684414 original size:19 final size:18
Alignment explanation
Indices: 84684349--84684418 Score: 68
Period size: 19 Copynumber: 3.7 Consensus size: 18
84684339 TTTTGGTATG
84684349 ATAATTTTTATAATTCTTTT
1 ATAA-TTTTATAATTC-TTT
*
84684369 ACAAATTTTATAATTCTTT
1 A-TAATTTTATAATTCTTT
* * *
84684388 ATATTTTTATCATTTTCTT
1 ATAATTTTATAATTCT-TT
84684407 ATAATTTTATAA
1 ATAATTTTATAA
84684419 AAATTTATAT
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
18 11 0.27
19 16 0.39
20 12 0.29
21 2 0.05
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (18 bp):
ATAATTTTATAATTCTTT
Found at i:84688782 original size:2 final size:2
Alignment explanation
Indices: 84688775--84688808 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
84688765 TTTCCTTTCA
84688775 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84688809 TATGCCTAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:84691392 original size:26 final size:26
Alignment explanation
Indices: 84691363--84691416 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
84691353 TCATGGACAA
*
84691363 ATGAACGTTTTTTTATGAATCATGAT
1 ATGAACCTTTTTTTATGAATCATGAT
84691389 ATGAACCTTTTTTTATGAATCATGAT
1 ATGAACCTTTTTTTATGAATCATGAT
84691415 AT
1 AT
84691417 CATTCATTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (26 bp):
ATGAACCTTTTTTTATGAATCATGAT
Found at i:84691633 original size:18 final size:19
Alignment explanation
Indices: 84691586--84691634 Score: 57
Period size: 21 Copynumber: 2.6 Consensus size: 19
84691576 AACATTTTTT
*
84691586 ATAA-ATTTTTATTTTTAA
1 ATAATATTTTTATTTCTAA
84691604 ATATATTATTTTTATTTCT-A
1 ATA-A-TATTTTTATTTCTAA
84691624 ATAATATTTTT
1 ATAATATTTTT
84691635 CACAAGTTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 10 0.37
19 2 0.07
20 4 0.15
21 11 0.41
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (19 bp):
ATAATATTTTTATTTCTAA
Found at i:84697552 original size:50 final size:50
Alignment explanation
Indices: 84697428--84697676 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
84697418 GATAATAACA
* * ** * *
84697428 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
84697479 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
84697529 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
84697579 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
84697634 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
84697677 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:84697606 original size:100 final size:104
Alignment explanation
Indices: 84697427--84697676 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
84697417 TGATAATAAC
**
84697427 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
84697492 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
84697529 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
84697592 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
84697634 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
84697677 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:84697792 original size:13 final size:13
Alignment explanation
Indices: 84697771--84697802 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
84697761 GCTTGGATCA
*
84697771 TCATCAAATAAAT
1 TCATAAAATAAAT
84697784 TCATAAAATAAAT
1 TCATAAAATAAAT
84697797 TCATAA
1 TCATAA
84697803 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:84698049 original size:30 final size:30
Alignment explanation
Indices: 84698014--84698071 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
84698004 CCTCGACTCT
*
84698014 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
84698044 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
84698072 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:84705142 original size:50 final size:50
Alignment explanation
Indices: 84705018--84705266 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
84705008 GATAATAACA
* * ** * *
84705018 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
84705069 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
84705119 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
84705169 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
84705224 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
84705267 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:84705196 original size:100 final size:104
Alignment explanation
Indices: 84705017--84705266 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
84705007 TGATAATAAC
**
84705017 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
84705082 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
84705119 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
84705182 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
84705224 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
84705267 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:84705382 original size:13 final size:13
Alignment explanation
Indices: 84705361--84705392 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
84705351 GCTTGGATCA
*
84705361 TCATCAAATAAAT
1 TCATAAAATAAAT
84705374 TCATAAAATAAAT
1 TCATAAAATAAAT
84705387 TCATAA
1 TCATAA
84705393 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:84705639 original size:30 final size:30
Alignment explanation
Indices: 84705604--84705661 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
84705594 CCTCGACTCT
*
84705604 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
84705634 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
84705662 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:84707405 original size:6 final size:6
Alignment explanation
Indices: 84707390--84707426 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
84707380 ATACACAGTT
* *
84707390 AGATAC AGATTT AGATTC AGATTC AGATTC AGATTC A
1 AGATTC AGATTC AGATTC AGATTC AGATTC AGATTC A
84707427 AATTACATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32
Consensus pattern (6 bp):
AGATTC
Found at i:84711062 original size:21 final size:21
Alignment explanation
Indices: 84711038--84711088 Score: 86
Period size: 21 Copynumber: 2.4 Consensus size: 21
84711028 TGATAATATA
84711038 AGTTATCTTTA-CCTGTTGAAG
1 AGTTATCTTTACCCT-TTGAAG
84711059 AGTTATCTTTACCCTTTGAAG
1 AGTTATCTTTACCCTTTGAAG
84711080 AGTTATCTT
1 AGTTATCTT
84711089 GAGAACTCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 26 0.90
22 3 0.10
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.45
Consensus pattern (21 bp):
AGTTATCTTTACCCTTTGAAG
Found at i:84717500 original size:518 final size:518
Alignment explanation
Indices: 84716535--84717846 Score: 1942
Period size: 518 Copynumber: 2.5 Consensus size: 518
84716525 GTATGGTTCA
* * * *
84716535 TCTTAACTCATCATCATTCAACATACAAAACCTCTATCGAAAACACAA-TATACAATATCATTAA
1 TCTTAACTCATCATCATTCACCAAACAAAACCTCCATCGAAAACACAAGT-TACATTATCATTAA
* * *
84716599 ATCTAAAATCCTCAATC-TTTCTTTCTTTCACGAGCTTGATTTGAGGTAATAGGGTTATATCTGA
65 ATCTAAAATCCTCAATCTTTTC-TTCTTCCATGAGCTTGATTCGAGGTAATAGGGTTATATCTGA
*** * * *
84716663 GGGTTGTTTAGATTTGATCTCATCATCTAAGGCGTGTTTTACTTGCAATTCTGCTAGCAAGACTC
129 GGGTTGTTTAGATTTGATCTCATTGGCTAAGGTGGGTTTTACTTGCAATTCTGCTAGCAAGCCTC
*
84716728 CATCATCCATTAAACTCAACCTTGCCAAAATTGCCCTTAAATCAGTCACATGCTTCCAATTTAGG
194 CATCATCCATTAAACTCAACCTTGCCAAAATTG-CCTTAAATCAGTCACCTGCTTCCAATTTAGG
* * *
84716793 GCGTTTGCAA-TAACATTGACTTTCCCGGTGTGATACTCAATCACACAATCATAAGTTTCAACAG
258 GCGTTTGCAACGAACATTGACTTTCCCGGTGTGATAATCAATCACAAAATCATAAGTTTCAACAG
** * *
84716857 CTCTAACCATGTCCATTTCCTAAGCTTCAATTTTTTTAAGTGAGAAGATAATTAAGGTTCTTATG
323 CTCTAACCACATCCATTGCATAAGCTTCAATTTTTTTAAGTGAGAAGATAATTAAGGTTCTTATG
84716922 GTTAGTGTAGATGTAATACTTCTTCCTATACAAATACTACCTCCAAATCTTAAGTGAAAAACCAA
388 GTTAGTGTAGATGTAATACTTCTTCCTATACAAATACTACCTCCAAATCTTAAGTGAAAAACCAA
* * *
84716987 CTACAACTAACTTTAAGTCATGAGTTGGGTAGTTGCACTGATGTTGTTTCAACTAAGTATGATTT
453 CTACAACCAACTTTAAGTCATGAGTTGGGTAGTTGCACTCATGTTGTTTCAACTAAGTATGATGT
*
84717052 G
518 C
*
84717053 TCTTAACTCATCATCATTCACCAAACAAAACTTCCATCGAAAACACAAGTTACTATTAT-ATTAA
1 TCTTAACTCATCATCATTCACCAAACAAAACCTCCATCGAAAACACAAGTTAC-ATTATCATTAA
*
84717117 ATCTAAAATCCTCAATCTTTTCTTCTTCCATGAGCTTGATTCGAGGTAATAGAGTTATATCTGAG
65 ATCTAAAATCCTCAATCTTTTCTTCTTCCATGAGCTTGATTCGAGGTAATAGGGTTATATCTGAG
* * *
84717182 GGTTGTTTACATTTGATCTTATTGGCTAAGGTGGGTTTTACTTGCAATTCTGCTAGCAAGCCTCT
130 GGTTGTTTAGATTTGATCTCATTGGCTAAGGTGGGTTTTACTTGCAATTCTGCTAGCAAGCCTCC
* ** * * *
84717247 ATTATCCATTAAACTCAACCTTGCCAGGATTGCACTTAAATCAATCACCTACTTCCAACTTAGGG
195 ATCATCCATTAAACTCAACCTTGCCAAAATTGC-CTTAAATCAGTCACCTGCTTCCAATTTAGGG
* * * *
84717312 TGTTTGCAACGAA-ATTGGCTTTCCCAAGGTG-G-TAATCAATCACAAAATCATAATTTTCAATA
259 CGTTTGCAACGAACATTGACTTTCCC--GGTGTGATAATCAATCACAAAATCATAAGTTTCAACA
* *
84717374 GCTCTAACCACATCTATTGCATAAGCTTTAATTTTTTTAAGTGAGAAGATAATTAAGGTTCTTAT
322 GCTCTAACCACATCCATTGCATAAGCTTCAATTTTTTTAAGTGAGAAGATAATTAAGGTTCTTAT
84717439 GGTTAGTGTAGATGTAATACTTCTTCCTATACAAATACTACCTCCAAATCTTAAGTGAAAAACCA
387 GGTTAGTGTAGATGTAATACTTCTTCCTATACAAATACTACCTCCAAATCTTAAGTGAAAAACCA
* *
84717504 ACTGCAACCAACTTTAAGTCATGAGTTGGGTAGTTGCACTCATGTTGTTTCAACTAAGTATGGTG
452 ACTACAACCAACTTTAAGTCATGAGTTGGGTAGTTGCACTCATGTTGTTTCAACTAAGTATGATG
84717569 TC
517 TC
* * * * *
84717571 TCTTAACTCATCATTATTCACCACACAAAACCTCCATC-AGAAACACAAGATACCATTATCCTGA
1 TCTTAACTCATCATCATTCACCAAACAAAACCTCCATCGA-AAACACAAGTTA-CATTATCATTA
* *
84717635 AATC-AGAAATCCTCAATCTTTCCTTCTTCCATGAGCTTGATTCGAGGTAATAGGGTTATATCTA
64 AATCTA-AAATCCTCAATCTTTTCTTCTTCCATGAGCTTGATTCGAGGTAATAGGGTTATATCTG
* * * *
84717699 AAGGTTGTTTAGATTTGGTCTCATTGGCTAAGGTGGGTTTTACTTTCAATTCTGTTAGCAAGCCT
128 AGGGTTGTTTAGATTTGATCTCATTGGCTAAGGTGGGTTTTACTTGCAATTCTGCTAGCAAGCCT
*
84717764 CCATCATCCATTAAACTCAACCTTGCCAACATTGCCTTTAAATCAGTCACCTGCTTCCAATTTAG
193 CCATCATCCATTAAACTCAACCTTGCCAAAATTGCC-TTAAATCAGTCACCTGCTTCCAATTTAG
*
84717829 AGCGTTTGCAACG-ACATT
257 GGCGTTTGCAACGAACATT
84717847 CCCGAAAGGT
Statistics
Matches: 713, Mismatches: 68, Indels: 25
0.88 0.08 0.03
Matches are distributed among these distances:
517 2 0.00
518 504 0.71
519 203 0.28
520 4 0.01
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34
Consensus pattern (518 bp):
TCTTAACTCATCATCATTCACCAAACAAAACCTCCATCGAAAACACAAGTTACATTATCATTAAA
TCTAAAATCCTCAATCTTTTCTTCTTCCATGAGCTTGATTCGAGGTAATAGGGTTATATCTGAGG
GTTGTTTAGATTTGATCTCATTGGCTAAGGTGGGTTTTACTTGCAATTCTGCTAGCAAGCCTCCA
TCATCCATTAAACTCAACCTTGCCAAAATTGCCTTAAATCAGTCACCTGCTTCCAATTTAGGGCG
TTTGCAACGAACATTGACTTTCCCGGTGTGATAATCAATCACAAAATCATAAGTTTCAACAGCTC
TAACCACATCCATTGCATAAGCTTCAATTTTTTTAAGTGAGAAGATAATTAAGGTTCTTATGGTT
AGTGTAGATGTAATACTTCTTCCTATACAAATACTACCTCCAAATCTTAAGTGAAAAACCAACTA
CAACCAACTTTAAGTCATGAGTTGGGTAGTTGCACTCATGTTGTTTCAACTAAGTATGATGTC
Found at i:84724859 original size:19 final size:19
Alignment explanation
Indices: 84724808--84724859 Score: 50
Period size: 22 Copynumber: 2.6 Consensus size: 19
84724798 AAAAATAAAC
** *
84724808 TTTTAAATCATTTTTTACT
1 TTTTAAATTTTTTTTTAAT
84724827 TTTTAAAAGGTTTTTTTTTAAT
1 TTTT-AAA--TTTTTTTTTAAT
84724849 TTTTAAATTTT
1 TTTTAAATTTT
84724860 AAGAATTAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
19 8 0.30
20 3 0.11
21 3 0.11
22 13 0.48
ACGTcount: A:0.27, C:0.04, G:0.04, T:0.65
Consensus pattern (19 bp):
TTTTAAATTTTTTTTTAAT
Found at i:84729881 original size:16 final size:15
Alignment explanation
Indices: 84729860--84729890 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
84729850 CATCCATGGT
84729860 TAGAGGATATTCTTGA
1 TAGAGGATATT-TTGA
84729876 TAGAGGATATTTTGA
1 TAGAGGATATTTTGA
84729891 ATCATAATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.32, C:0.03, G:0.26, T:0.39
Consensus pattern (15 bp):
TAGAGGATATTTTGA
Found at i:84743228 original size:48 final size:48
Alignment explanation
Indices: 84743153--84743328 Score: 153
Period size: 48 Copynumber: 3.6 Consensus size: 48
84743143 CTTGATGCAT
*
84743153 GGGAGAGCTTAC-GAAAGGTAATCATATGACCCTACTCCCAAATGTATGG
1 GGGAG-GCTTACAGAAA-GTAATAATATGACCCTACTCCCAAATGTATGG
* * * *
84743202 GGGAGGCTTACAGAAAATAATAATATGACCCTACTTCCAGATATATGG
1 GGGAGGCTTACAGAAAGTAATAATATGACCCTACTCCCAAATGTATGG
** ** * * *
84743250 AGTAAGGCTTATGGAAAGTAATAATAT-ATTCCTACTCCCAAATGCAAT-A
1 -GGGAGGCTTACAGAAAGTAATAATATGA-CCCTACTCCCAAATG-TATGG
*
84743299 GGGAGACTTACA-ACAAGTAATAATATGACC
1 GGGAGGCTTACAGA-AAGTAATAATATGACC
84743329 TGCTCTTAAA
Statistics
Matches: 99, Mismatches: 22, Indels: 13
0.74 0.16 0.10
Matches are distributed among these distances:
47 1 0.01
48 54 0.55
49 42 0.42
50 2 0.02
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (48 bp):
GGGAGGCTTACAGAAAGTAATAATATGACCCTACTCCCAAATGTATGG
Found at i:84743357 original size:48 final size:49
Alignment explanation
Indices: 84743313--84743420 Score: 148
Period size: 51 Copynumber: 2.2 Consensus size: 49
84743303 GACTTACAAC
84743313 AAGTAATAATATGA-C-CTGCTCTTAAACACATGAGGAGAGTCTTACAG
1 AAGTAATAATATGACCACTGCTCTTAAACACATGAGGAGAGTCTTACAG
* * * *
84743360 AAGTAATAATGTTACCCTACTTCTCTTAAACACATGAGGAGAGTCTTATAG
1 AAGTAATAATATGA-CC-ACTGCTCTTAAACACATGAGGAGAGTCTTACAG
84743411 AAGTAATAAT
1 AAGTAATAAT
84743421 GTTACCCTAC
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
47 12 0.23
49 1 0.02
51 40 0.75
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.29
Consensus pattern (49 bp):
AAGTAATAATATGACCACTGCTCTTAAACACATGAGGAGAGTCTTACAG
Found at i:84743391 original size:51 final size:51
Alignment explanation
Indices: 84743331--84743434 Score: 199
Period size: 51 Copynumber: 2.0 Consensus size: 51
84743321 ATATGACCTG
84743331 CTCTTAAACACATGAGGAGAGTCTTACAGAAGTAATAATGTTACCCTACTT
1 CTCTTAAACACATGAGGAGAGTCTTACAGAAGTAATAATGTTACCCTACTT
*
84743382 CTCTTAAACACATGAGGAGAGTCTTATAGAAGTAATAATGTTACCCTACTT
1 CTCTTAAACACATGAGGAGAGTCTTACAGAAGTAATAATGTTACCCTACTT
84743433 CT
1 CT
84743435 AGATGTATGA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (51 bp):
CTCTTAAACACATGAGGAGAGTCTTACAGAAGTAATAATGTTACCCTACTT
Found at i:84747745 original size:14 final size:14
Alignment explanation
Indices: 84747704--84747750 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
84747694 TCATTGTTTC
84747704 TTTATGCCTGAAAT
1 TTTATGCCTGAAAT
*
84747718 TTT-TACC-G--AT
1 TTTATGCCTGAAAT
84747728 TTTATGCCTGAAAT
1 TTTATGCCTGAAAT
84747742 TTTATGCCT
1 TTTATGCCT
84747751 TTCTTTGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
10 5 0.19
11 3 0.11
12 2 0.07
13 3 0.11
14 14 0.52
ACGTcount: A:0.23, C:0.17, G:0.13, T:0.47
Consensus pattern (14 bp):
TTTATGCCTGAAAT
Found at i:84749804 original size:22 final size:22
Alignment explanation
Indices: 84749773--84749837 Score: 103
Period size: 22 Copynumber: 3.0 Consensus size: 22
84749763 TTGGGGCTCT
* *
84749773 TTTTTCTTTAAGGCCATTTATG
1 TTTTTGTTTAAGGCCATTGATG
84749795 TTTTTGTTTAAGGCCATTGATG
1 TTTTTGTTTAAGGCCATTGATG
*
84749817 TTTTTGTTTAAGGCAATTGAT
1 TTTTTGTTTAAGGCCATTGAT
84749838 CTGCTCTATG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.20, C:0.09, G:0.18, T:0.52
Consensus pattern (22 bp):
TTTTTGTTTAAGGCCATTGATG
Found at i:84759565 original size:15 final size:15
Alignment explanation
Indices: 84759518--84759565 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
84759508 TATAAGATAA
84759518 AAATTTAAATTTTGTT
1 AAATTT-AATTTTGTT
* **
84759534 AATTTTAATAATGTT
1 AAATTTAATTTTGTT
*
84759549 AAATTTAATTTTTTT
1 AAATTTAATTTTGTT
84759564 AA
1 AA
84759566 TTTGAAATTA
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
15 20 0.80
16 5 0.20
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (15 bp):
AAATTTAATTTTGTT
Found at i:84766532 original size:17 final size:16
Alignment explanation
Indices: 84766497--84766528 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
84766487 TGAACACTTT
*
84766497 TAAAATACCTTAAACC
1 TAAAAAACCTTAAACC
84766513 TAAAAAACCTTAAACC
1 TAAAAAACCTTAAACC
84766529 CTAACCCTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.25, G:0.00, T:0.22
Consensus pattern (16 bp):
TAAAAAACCTTAAACC
Found at i:84766538 original size:23 final size:23
Alignment explanation
Indices: 84766497--84766581 Score: 75
Period size: 23 Copynumber: 3.7 Consensus size: 23
84766487 TGAACACTTT
* *
84766497 TAAAATACCTTAAACCTAAAAAACC
1 TAAAAT-CCCTAACCCTAAAAAA-C
* *
84766522 TTAAA-CCCTAACCCTAAAACAC
1 TAAAATCCCTAACCCTAAAAAAC
*
84766544 TAAAATCCCTAACCTTAAAAAA-
1 TAAAATCCCTAACCCTAAAAAAC
**
84766566 TAAAAAACCTAACCCT
1 TAAAATCCCTAACCCT
84766582 GGAGAGAGAA
Statistics
Matches: 49, Mismatches: 10, Indels: 5
0.77 0.16 0.08
Matches are distributed among these distances:
22 18 0.37
23 27 0.55
25 4 0.08
ACGTcount: A:0.52, C:0.28, G:0.00, T:0.20
Consensus pattern (23 bp):
TAAAATCCCTAACCCTAAAAAAC
Found at i:84766576 original size:22 final size:23
Alignment explanation
Indices: 84766528--84766581 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 23
84766518 AACCTTAAAC
* **
84766528 CCTAACCCTAAAACACTAAAATC
1 CCTAACCCTAAAACAATAAAAAA
*
84766551 CCTAACCTTAAAA-AATAAAAAA
1 CCTAACCCTAAAACAATAAAAAA
84766573 CCTAACCCT
1 CCTAACCCT
84766582 GGAGAGAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 14 0.54
23 12 0.46
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (23 bp):
CCTAACCCTAAAACAATAAAAAA
Found at i:84771559 original size:21 final size:21
Alignment explanation
Indices: 84771533--84771581 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
84771523 ATTAATTTTG
* * *
84771533 ATCTCACTGTTATATTAACTA
1 ATCTCACCGTTACAGTAACTA
84771554 ATCTCACCGTTACAGTAACTA
1 ATCTCACCGTTACAGTAACTA
84771575 ATCTCAC
1 ATCTCAC
84771582 AACTATCATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.35
Consensus pattern (21 bp):
ATCTCACCGTTACAGTAACTA
Found at i:84772994 original size:16 final size:16
Alignment explanation
Indices: 84772963--84772999 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
84772953 ATGTAAAGAA
84772963 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
84772979 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
84772995 TATTA
1 TATTA
84773000 AAATAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:84773009 original size:17 final size:18
Alignment explanation
Indices: 84772987--84773030 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
84772977 ATTATTTTTA
84772987 AAATTTATTAT-TAAAAT
1 AAATTTATTATATAAAAT
**
84773004 AAATTTAGAATATAAAAT
1 AAATTTATTATATAAAAT
84773022 -AATTTATTA
1 AAATTTATTA
84773031 AAATAATAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
17 16 0.73
18 6 0.27
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (18 bp):
AAATTTATTATATAAAAT
Found at i:84773079 original size:29 final size:28
Alignment explanation
Indices: 84772994--84773079 Score: 77
Period size: 29 Copynumber: 2.9 Consensus size: 28
84772984 TTAAAATTTA
84772994 TTATTAAAATAAATTTAGAATATAA-AATAAT
1 TTATTAAAAT-AA--TA-AATATAATAATAAT
*
84773025 TTATTAAAATAATAAATCATATTAATAAT
1 TTATTAAAATAATAAAT-ATAATAATAAT
*
84773054 TTATT-ATATGAATAAATATAAATAAT
1 TTATTAAAAT-AATAAATAT-AATAAT
84773080 TAAATATGTA
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
27 3 0.06
28 10 0.21
29 23 0.48
30 2 0.04
31 10 0.21
ACGTcount: A:0.56, C:0.01, G:0.02, T:0.41
Consensus pattern (28 bp):
TTATTAAAATAATAAATATAATAATAAT
Found at i:84777529 original size:22 final size:23
Alignment explanation
Indices: 84777503--84777551 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 23
84777493 AATAATTTAG
*
84777503 TTTAGATTTACTTTTATT-TAAA
1 TTTAGATATACTTTTATTATAAA
*
84777525 TTTAGATATACTTTTATTATTAA
1 TTTAGATATACTTTTATTATAAA
84777548 TTTA
1 TTTA
84777552 TTGTATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 17 0.71
23 7 0.29
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (23 bp):
TTTAGATATACTTTTATTATAAA
Found at i:84792542 original size:33 final size:33
Alignment explanation
Indices: 84792462--84792543 Score: 96
Period size: 33 Copynumber: 2.5 Consensus size: 33
84792452 TTAGGTTCCA
*
84792462 TTTAGTTTTTGAAAATATATTTTATTTTTATTT
1 TTTAATTTTTGAAAATATATTTTATTTTTATTT
* *
84792495 TTTAATTTTAGAAAATA-GTTTTATTTTT-TATT
1 TTTAATTTTTGAAAATATATTTTATTTTTAT-TT
*
84792527 TTTATTTTTTTGAAAAT
1 TTTA-ATTTTTGAAAAT
84792544 TGAAAAACTT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
31 1 0.02
32 16 0.38
33 25 0.60
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (33 bp):
TTTAATTTTTGAAAATATATTTTATTTTTATTT
Found at i:84795651 original size:60 final size:60
Alignment explanation
Indices: 84795527--84795700 Score: 167
Period size: 60 Copynumber: 2.9 Consensus size: 60
84795517 TAGGCCATCT
* * * * * * * *
84795527 TAAATCTTATTTGAAACAC-CCAGCAGATA-CCAAGATCAGCCAAAC-CAATAAGTAGTCC
1 TAAATCTTACTTGAAATACTCAAGCAGATAGCC-ACATCAGCCAAACATAATAAGCACTCG
* * * *
84795585 TAAATCTTACTTGAAACT-CTCAAGCATATATCCACATCAGCCAAGCTTAATAAGCACTCG
1 TAAATCTTACTTGAAA-TACTCAAGCAGATAGCCACATCAGCCAAACATAATAAGCACTCG
* * *
84795645 TAAATCTTCCTTGAAATAGTCATGCAGATAGCCACATCAGCCAAACATAATAAGCA
1 TAAATCTTACTTGAAATACTCAAGCAGATAGCCACATCAGCCAAACATAATAAGCA
84795701 GTCCTAAAAC
Statistics
Matches: 94, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
58 16 0.17
59 20 0.21
60 58 0.62
ACGTcount: A:0.40, C:0.25, G:0.11, T:0.24
Consensus pattern (60 bp):
TAAATCTTACTTGAAATACTCAAGCAGATAGCCACATCAGCCAAACATAATAAGCACTCG
Found at i:84800106 original size:3 final size:3
Alignment explanation
Indices: 84800098--84800124 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
84800088 ATTAAAAGAA
84800098 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
84800125 GTGCCATGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:84801314 original size:26 final size:25
Alignment explanation
Indices: 84801269--84801319 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 25
84801259 TTTAATTAAG
*
84801269 TAAAATCTTAAAATAAAAAATTTATT
1 TAAAATC-TAAAATAAAAAAATTATT
84801295 TAAAATC-AAAATATATAAAAATTAT
1 TAAAATCTAAAATA-A-AAAAATTAT
84801320 AAAAAAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
24 6 0.27
25 1 0.05
26 15 0.68
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (25 bp):
TAAAATCTAAAATAAAAAAATTATT
Found at i:84802828 original size:22 final size:21
Alignment explanation
Indices: 84802786--84802831 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
84802776 CTTACTAACA
84802786 ATATAATATAGCAAAACATTT
1 ATATAATATAGCAAAACATTT
* * *
84802807 ATATATATATTGCCAAATATTT
1 ATATA-ATATAGCAAAACATTT
84802829 ATA
1 ATA
84802832 AAAATTTAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.48, C:0.09, G:0.04, T:0.39
Consensus pattern (21 bp):
ATATAATATAGCAAAACATTT
Found at i:84812236 original size:21 final size:21
Alignment explanation
Indices: 84812203--84812255 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
84812193 GTGGAAATCT
* * *
84812203 CACACGCCCGTGTGGCTAAGG
1 CACATGCCTGTGTGGCCAAGG
* * *
84812224 GACATGGCTGTGTGTCCAAGG
1 CACATGCCTGTGTGGCCAAGG
84812245 CACATGCCTGT
1 CACATGCCTGT
84812256 ATGAAAATCG
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.21
Consensus pattern (21 bp):
CACATGCCTGTGTGGCCAAGG
Found at i:84818810 original size:24 final size:24
Alignment explanation
Indices: 84818783--84818836 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
84818773 AGTAAGGTTA
84818783 GAATACCCTGTTCATTAAGTCCAT
1 GAATACCCTGTTCATTAAGTCCAT
*
84818807 GAATACCCTGTTCATTAAGTCTAT
1 GAATACCCTGTTCATTAAGTCCAT
84818831 GAATAC
1 GAATAC
84818837 TGTTGGCACA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (24 bp):
GAATACCCTGTTCATTAAGTCCAT
Found at i:84824574 original size:17 final size:17
Alignment explanation
Indices: 84824554--84824587 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
84824544 AAAAAAGTCA
84824554 AATCAACTAAAATGAAT
1 AATCAACTAAAATGAAT
84824571 AATCAACTAAAATGAAT
1 AATCAACTAAAATGAAT
84824588 CTAAAATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.12, G:0.06, T:0.24
Consensus pattern (17 bp):
AATCAACTAAAATGAAT
Found at i:84824697 original size:5 final size:5
Alignment explanation
Indices: 84824687--84824721 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
84824677 TACTTTAAAT
84824687 ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA
84824722 TTTATTTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:84844424 original size:14 final size:14
Alignment explanation
Indices: 84844405--84844434 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
84844395 AAATTTAAGA
*
84844405 TTTAATTTATATAT
1 TTTAATTTAAATAT
84844419 TTTAATTTAAATAT
1 TTTAATTTAAATAT
84844433 TT
1 TT
84844435 CATTCAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
TTTAATTTAAATAT
Found at i:84846164 original size:19 final size:22
Alignment explanation
Indices: 84846137--84846179 Score: 56
Period size: 19 Copynumber: 2.1 Consensus size: 22
84846127 CAATCATTTG
84846137 ATTTAATAA-AAA-A-TTTTAA
1 ATTTAATAACAAATATTTTTAA
*
84846156 ATTTTATAACAAATATTTTTAA
1 ATTTAATAACAAATATTTTTAA
84846178 AT
1 AT
84846180 AAAATAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 8 0.40
20 3 0.15
21 1 0.05
22 8 0.40
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (22 bp):
ATTTAATAACAAATATTTTTAA
Found at i:84856978 original size:27 final size:26
Alignment explanation
Indices: 84856906--84856966 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
84856896 CTTAAGAGTG
84856906 CGCCACAAAGGCTTTCTTTCATATTA
1 CGCCACAAAGGCTTTCTTTCATATTA
* *
84856932 CACCGCAAAGGCTTTCTTTCATATTA
1 CGCCACAAAGGCTTTCTTTCATATTA
*
84856958 TGCCACAAA
1 CGCCACAAA
84856967 AGGTTTCCTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.28, G:0.11, T:0.31
Consensus pattern (26 bp):
CGCCACAAAGGCTTTCTTTCATATTA
Found at i:84869931 original size:40 final size:40
Alignment explanation
Indices: 84869867--84869945 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 40
84869857 ATACGGTACC
*
84869867 ACTTGGTGTGTAGGGTTGAATGGGTTGATTGTATCCCCAT
1 ACTTGGTGTGTAGGGCTGAATGGGTTGATTGTATCCCCAT
** *
84869907 ACTTGGTGTGTAGGGCTGGGTGGGTTGATTTTATCCCCA
1 ACTTGGTGTGTAGGGCTGAATGGGTTGATTGTATCCCCA
84869946 CATAGTGTGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.15, C:0.14, G:0.34, T:0.37
Consensus pattern (40 bp):
ACTTGGTGTGTAGGGCTGAATGGGTTGATTGTATCCCCAT
Found at i:84872365 original size:58 final size:58
Alignment explanation
Indices: 84872291--84872407 Score: 234
Period size: 58 Copynumber: 2.0 Consensus size: 58
84872281 AATTTCAATA
84872291 GTTATGAAATAACTTATAATGTCTAGAAAAAGTATTAATTGAGAAAATTATCTTAATT
1 GTTATGAAATAACTTATAATGTCTAGAAAAAGTATTAATTGAGAAAATTATCTTAATT
84872349 GTTATGAAATAACTTATAATGTCTAGAAAAAGTATTAATTGAGAAAATTATCTTAATT
1 GTTATGAAATAACTTATAATGTCTAGAAAAAGTATTAATTGAGAAAATTATCTTAATT
84872407 G
1 G
84872408 AGAGGTTAAT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.44, C:0.05, G:0.13, T:0.38
Consensus pattern (58 bp):
GTTATGAAATAACTTATAATGTCTAGAAAAAGTATTAATTGAGAAAATTATCTTAATT
Found at i:84873688 original size:17 final size:17
Alignment explanation
Indices: 84873662--84873695 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
84873652 TTAGAATTCG
* *
84873662 ATTGAGAAATTTATTTA
1 ATTGAAAAATTAATTTA
84873679 ATTGAAAAATTAATTTA
1 ATTGAAAAATTAATTTA
84873696 TCTAATTAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (17 bp):
ATTGAAAAATTAATTTA
Found at i:84878642 original size:56 final size:57
Alignment explanation
Indices: 84878582--84878691 Score: 186
Period size: 56 Copynumber: 1.9 Consensus size: 57
84878572 TAGACAGGGT
* *
84878582 CTTACTCACACACATATATCGGAGTCACATATTGATGCCAACGTATTA-AACGTGGG
1 CTTACTCACACACATATATCGAAGTCACATATCGATGCCAACGTATTACAACGTGGG
*
84878638 CTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATTACAACGT
1 CTTACTCACACACATATATCGAAGTCACATATCGATGCCAACGTATTACAACGT
84878692 ATTAAACGTG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
56 45 0.90
57 5 0.10
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.26
Consensus pattern (57 bp):
CTTACTCACACACATATATCGAAGTCACATATCGATGCCAACGTATTACAACGTGGG
Found at i:84887387 original size:62 final size:62
Alignment explanation
Indices: 84887311--84887435 Score: 250
Period size: 62 Copynumber: 2.0 Consensus size: 62
84887301 TCTCTTTAAG
84887311 TTTGAATGTTTCTAGACTAAAACTAACTCTAACGGGTTAGGCATTCTTTTGCTCAAATCCCC
1 TTTGAATGTTTCTAGACTAAAACTAACTCTAACGGGTTAGGCATTCTTTTGCTCAAATCCCC
84887373 TTTGAATGTTTCTAGACTAAAACTAACTCTAACGGGTTAGGCATTCTTTTGCTCAAATCCCC
1 TTTGAATGTTTCTAGACTAAAACTAACTCTAACGGGTTAGGCATTCTTTTGCTCAAATCCCC
84887435 T
1 T
84887436 ACTCATCTAG
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.36
Consensus pattern (62 bp):
TTTGAATGTTTCTAGACTAAAACTAACTCTAACGGGTTAGGCATTCTTTTGCTCAAATCCCC
Found at i:84889358 original size:20 final size:21
Alignment explanation
Indices: 84889311--84889359 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
84889301 GTTTAAATTT
84889311 TAAA-AATTTTAAAAATTAAA
1 TAAATAATTTTAAAAATTAAA
*
84889331 TATATAATTTT-AAAA-TAAA
1 TAAATAATTTTAAAAATTAAA
84889350 TAAATTAATT
1 TAAA-TAATT
84889360 AACCTAGTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 7 0.28
20 12 0.48
21 6 0.24
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
TAAATAATTTTAAAAATTAAA
Found at i:84890886 original size:15 final size:14
Alignment explanation
Indices: 84890866--84890911 Score: 53
Period size: 12 Copynumber: 3.4 Consensus size: 14
84890856 TTCGCACCTG
84890866 ATATTTTTCGTTTAA
1 ATATTTTTC-TTTAA
84890881 ATA-TTTT-TTTAA
1 ATATTTTTCTTTAA
*
84890893 AT-TTTATCTTTAA
1 ATATTTTTCTTTAA
84890906 ATATTT
1 ATATTT
84890912 ACTCGACTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
12 10 0.37
13 7 0.26
14 7 0.26
15 3 0.11
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.63
Consensus pattern (14 bp):
ATATTTTTCTTTAA
Found at i:84891966 original size:20 final size:20
Alignment explanation
Indices: 84891943--84891982 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
84891933 AATAATTAAA
* *
84891943 TTAAATATTTAATAATATTT
1 TTAAATATTAAAAAATATTT
*
84891963 TTAATTATTAAAAAATATTT
1 TTAAATATTAAAAAATATTT
84891983 GAATCAATCC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TTAAATATTAAAAAATATTT
Found at i:84892625 original size:20 final size:20
Alignment explanation
Indices: 84892600--84892649 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
84892590 GCACACGCCT
84892600 GTGTGGCCT-GAGACATGCCC
1 GTGTGGCCTGGA-ACATGCCC
84892620 GTGTGGCCTGGAACATGCCC
1 GTGTGGCCTGGAACATGCCC
84892640 GTGTGGCCTG
1 GTGTGGCCTG
84892650 CCCGTAGGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 27 0.93
21 2 0.07
ACGTcount: A:0.12, C:0.28, G:0.38, T:0.22
Consensus pattern (20 bp):
GTGTGGCCTGGAACATGCCC
Found at i:84894766 original size:23 final size:24
Alignment explanation
Indices: 84894740--84894784 Score: 83
Period size: 23 Copynumber: 1.9 Consensus size: 24
84894730 ATATTACATG
84894740 TGTATTAATCCCACACC-TACACA
1 TGTATTAATCCCACACCATACACA
84894763 TGTATTAATCCCACACCATACA
1 TGTATTAATCCCACACCATACA
84894785 TTTGTCATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.36, C:0.33, G:0.04, T:0.27
Consensus pattern (24 bp):
TGTATTAATCCCACACCATACACA
Found at i:84894823 original size:3 final size:3
Alignment explanation
Indices: 84894802--84894839 Score: 53
Period size: 3 Copynumber: 13.0 Consensus size: 3
84894792 TTATCTCAAT
84894802 TAA TAGA TAA -AA T-A TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
84894840 GTAAATATCT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
2 4 0.12
3 25 0.78
4 3 0.09
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:84896499 original size:21 final size:21
Alignment explanation
Indices: 84896474--84896542 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
84896464 TATAATGATT
*
84896474 ATTATTATGGTTTTATATTAA
1 ATTATTATGATTTTATATTAA
*
84896495 ATTATTATAATTATTA-ATT-A
1 ATTATTATGATT-TTATATTAA
* *
84896515 A-CATTATGATTTTATATTAG
1 ATTATTATGATTTTATATTAA
84896535 ATTATTAT
1 ATTATTAT
84896543 TATTAGCATT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
18 3 0.08
19 11 0.29
20 3 0.08
21 18 0.47
22 3 0.08
ACGTcount: A:0.38, C:0.01, G:0.06, T:0.55
Consensus pattern (21 bp):
ATTATTATGATTTTATATTAA
Found at i:84899212 original size:3 final size:3
Alignment explanation
Indices: 84899206--84899336 Score: 54
Period size: 3 Copynumber: 43.0 Consensus size: 3
84899196 TTTTTGTTTT
* * * *
84899206 TTA TTA TCA TTA TTA -TA TTA TTA TTA TTT TTCA CGTA CATA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A -TTA -TTA TTA TTA
* * * * * *
84899252 TATA TTA TTT TTA TGA TTA TTA TT- GTA TTTA TTT TTA CTA CTA TTA
1 T-TA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
* * * *
84899298 -TA TTTA TTA TTA GTA TTA GTA TTA TAA TTA CTA TTA TTA
1 TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
84899337 CACCTATATG
Statistics
Matches: 94, Mismatches: 25, Indels: 18
0.69 0.18 0.13
Matches are distributed among these distances:
2 6 0.06
3 78 0.83
4 9 0.10
5 1 0.01
ACGTcount: A:0.31, C:0.05, G:0.04, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:84899296 original size:24 final size:24
Alignment explanation
Indices: 84899216--84899308 Score: 84
Period size: 24 Copynumber: 3.7 Consensus size: 24
84899206 TTATTATCAT
84899216 TATTATATTATTATTATTTTTCACGTAC
1 TATTAT-TTA-TATTATTTTT-AC-TAC
*
84899244 ATATTATTTATATTATTTTTA-TGAT
1 -TATTATTTATATTATTTTTACT-AC
84899269 TATTATTGTAT-TTATTTTTACTAC
1 TATTATT-TATATTATTTTTACTAC
84899293 TATTATATT-TATTATT
1 TATTAT-TTATATTATT
84899309 AGTATTAGTA
Statistics
Matches: 57, Mismatches: 2, Indels: 15
0.77 0.03 0.20
Matches are distributed among these distances:
23 1 0.02
24 30 0.53
25 6 0.11
26 1 0.02
27 10 0.18
28 3 0.05
29 6 0.11
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.62
Consensus pattern (24 bp):
TATTATTTATATTATTTTTACTAC
Found at i:84899625 original size:27 final size:27
Alignment explanation
Indices: 84899585--84899643 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
84899575 TATATTACTT
* *
84899585 TTTTTTACATATTATCTTCTGTATATA
1 TTTTTTACATATTATATTATGTATATA
*
84899612 TTTTTTA-ATAATTATATTATGTATGTA
1 TTTTTTACAT-ATTATATTATGTATATA
84899639 TTTTT
1 TTTTT
84899644 AACGCTATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 2 0.07
27 26 0.93
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.63
Consensus pattern (27 bp):
TTTTTTACATATTATATTATGTATATA
Found at i:84899732 original size:11 final size:11
Alignment explanation
Indices: 84899716--84899783 Score: 73
Period size: 11 Copynumber: 6.0 Consensus size: 11
84899706 TCATTTCTAA
*
84899716 TATGTATATGT
1 TATGTATATAT
84899727 TATGTATATAT
1 TATGTATATAT
* *
84899738 TTTAATACTATAT
1 TAT-GTA-TATAT
84899751 TATGTATATAT
1 TATGTATATAT
* *
84899762 TTTATATATAT
1 TATGTATATAT
84899773 TATGTATATAT
1 TATGTATATAT
84899784 ATTTTTAATA
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
11 35 0.76
12 4 0.09
13 7 0.15
ACGTcount: A:0.35, C:0.01, G:0.07, T:0.56
Consensus pattern (11 bp):
TATGTATATAT
Found at i:84899754 original size:24 final size:22
Alignment explanation
Indices: 84899720--84899825 Score: 107
Period size: 22 Copynumber: 5.0 Consensus size: 22
84899710 TTCTAATATG
*
84899720 TATATGTTATGTATATATTTTAA
1 TATATATTATGTATATATTTT-A
84899743 TACTATATTATGTATATATTTTA
1 TA-TATATTATGTATATATTTTA
84899766 TATATATTATGTATATATATTT-
1 TATATATTATGTATATAT-TTTA
* *
84899788 T-TA-A-TA-ATAT-TTTTTTA
1 TATATATTATGTATATATTTTA
*
84899805 TATATGTTATGTATATATTTT
1 TATATATTATGTATATATTTT
84899826 TAATATCACA
Statistics
Matches: 69, Mismatches: 6, Indels: 17
0.75 0.07 0.18
Matches are distributed among these distances:
16 3 0.04
17 3 0.04
18 5 0.07
19 2 0.03
20 3 0.04
21 5 0.07
22 22 0.32
23 8 0.12
24 18 0.26
ACGTcount: A:0.34, C:0.01, G:0.06, T:0.59
Consensus pattern (22 bp):
TATATATTATGTATATATTTTA
Found at i:84899766 original size:13 final size:13
Alignment explanation
Indices: 84899720--84899825 Score: 70
Period size: 13 Copynumber: 8.6 Consensus size: 13
84899710 TTCTAATATG
*
84899720 TATATGTTATGTA
1 TATATTTTATGTA
84899733 TATATTTTA---A
1 TATATTTTATGTA
*
84899743 TACTATATTATGTA
1 TA-TATTTTATGTA
84899757 TATATTTTA--TA
1 TATATTTTATGTA
84899768 TATA--TTATGTA
1 TATATTTTATGTA
84899779 TATATATTT-T-TAA
1 TATAT-TTTATGT-A
*
84899792 TAATATTTT-TTTA
1 T-ATATTTTATGTA
*
84899805 TATATGTTATGTA
1 TATATTTTATGTA
84899818 TATATTTT
1 TATATTTT
84899826 TAATATCACA
Statistics
Matches: 74, Mismatches: 6, Indels: 26
0.70 0.06 0.25
Matches are distributed among these distances:
9 3 0.04
10 3 0.04
11 18 0.24
12 7 0.09
13 33 0.45
14 10 0.14
ACGTcount: A:0.34, C:0.01, G:0.06, T:0.59
Consensus pattern (13 bp):
TATATTTTATGTA
Found at i:84899772 original size:48 final size:48
Alignment explanation
Indices: 84899720--84899930 Score: 139
Period size: 50 Copynumber: 4.6 Consensus size: 48
84899710 TTCTAATATG
84899720 TATATGTTATGTATATA-TTTTAATACTATATTATGTATATA--TTTTA
1 TATATGTTATGTATATACTTTTAATACTATATTAT-TATATATTTTTTA
*
84899766 TATATATTATGTATATA-TATTT--T--TA-A-TA--ATAT-TTTTTTA
1 TATATGTTATGTATATACT-TTTAATACTATATTATTATATATTTTTTA
* * *
84899805 TATATGTTATGTATATATTTTTAATA-TCACATTATTCATACATTTTTTA
1 TATATGTTATGTATATACTTTTAATACT-ATATTATT-ATATATTTTTTA
*** * * * *
84899854 TATTATCCCATGTAAATACTTTCAATACTATATTATGCATATATTTTTGTC
1 TA-TATGTTATGTATATACTTTTAATACTATATTAT-TATATATTTTT-TA
*
84899905 TATA--TTATATATATACTTTTAATACT
1 TATATGTTATGTATATACTTTTAATACT
84899931 CAACACTATT
Statistics
Matches: 129, Mismatches: 18, Indels: 34
0.71 0.10 0.19
Matches are distributed among these distances:
38 4 0.03
39 24 0.19
40 1 0.01
41 3 0.02
42 2 0.02
43 3 0.02
44 1 0.01
45 3 0.02
46 17 0.13
47 3 0.02
48 20 0.16
49 9 0.07
50 35 0.27
51 4 0.03
ACGTcount: A:0.34, C:0.07, G:0.04, T:0.55
Consensus pattern (48 bp):
TATATGTTATGTATATACTTTTAATACTATATTATTATATATTTTTTA
Found at i:84899807 original size:37 final size:37
Alignment explanation
Indices: 84899756--84899830 Score: 100
Period size: 37 Copynumber: 2.0 Consensus size: 37
84899746 TATATTATGT
84899756 ATATATTTTATATATA-TTATGTATATATATTTTTAATA
1 ATATATTTTATATATAGTTATG--TATATATTTTTAATA
*
84899794 ATAT-TTTTTTATATATGTTATGTATATATTTTTAATA
1 ATATATTTTATATATA-GTTATGTATATATTTTTAATA
84899831 TCACATTATT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
37 25 0.74
38 4 0.12
39 5 0.15
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (37 bp):
ATATATTTTATATATAGTTATGTATATATTTTTAATA
Found at i:84899918 original size:23 final size:23
Alignment explanation
Indices: 84899881--84899924 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
84899871 ACTTTCAATA
* *
84899881 CTATATTATGCATATATTTTTGT
1 CTATATTATACATATACTTTTGT
*
84899904 CTATATTATATATATACTTTT
1 CTATATTATACATATACTTTT
84899925 AATACTCAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.30, C:0.09, G:0.05, T:0.57
Consensus pattern (23 bp):
CTATATTATACATATACTTTTGT
Found at i:84900236 original size:32 final size:32
Alignment explanation
Indices: 84900165--84900237 Score: 78
Period size: 32 Copynumber: 2.3 Consensus size: 32
84900155 TTGTTTTCAA
* * *
84900165 TATATATTGTATATATATATTTAATCTAGTAT
1 TATATGTTTTATATATATATTTAATCTACTAT
*
84900197 TATATGTTTTATATATATATGTTCA-CTACTAT
1 TATATGTTTTATATATATAT-TTAATCTACTAT
84900229 T-TAATGTTT
1 TAT-ATGTTT
84900238 ACATTATTAC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
31 1 0.03
32 31 0.89
33 3 0.09
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.55
Consensus pattern (32 bp):
TATATGTTTTATATATATATTTAATCTACTAT
Found at i:84907588 original size:46 final size:46
Alignment explanation
Indices: 84907537--84907626 Score: 171
Period size: 46 Copynumber: 2.0 Consensus size: 46
84907527 TACCATGTTT
84907537 TTGAGCTTGTTTCAACTCGTAGAGAGCCTTATTTAACAAATAAATC
1 TTGAGCTTGTTTCAACTCGTAGAGAGCCTTATTTAACAAATAAATC
*
84907583 TTGAGCTTGTTTCAACTCGTAGATAGCCTTATTTAACAAATAAA
1 TTGAGCTTGTTTCAACTCGTAGAGAGCCTTATTTAACAAATAAA
84907627 CTTTTTCCTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (46 bp):
TTGAGCTTGTTTCAACTCGTAGAGAGCCTTATTTAACAAATAAATC
Found at i:84917112 original size:26 final size:25
Alignment explanation
Indices: 84917075--84917179 Score: 183
Period size: 25 Copynumber: 4.2 Consensus size: 25
84917065 CCTCAAATCA
*
84917075 TTTTTCCCAAATCTCTAACTTAGTT
1 TTTTTCCCAAATCCCTAACTTAGTT
84917100 TTTTTCCCTAAATCCCTAACTTAGTT
1 TTTTTCCC-AAATCCCTAACTTAGTT
*
84917126 TTTTTCCTAAATCCCTAACTTAGTT
1 TTTTTCCCAAATCCCTAACTTAGTT
84917151 TTTTTCCCAAATCCCTAACTTAGTT
1 TTTTTCCCAAATCCCTAACTTAGTT
84917176 TTTT
1 TTTT
84917180 CTTTCCCATC
Statistics
Matches: 76, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
25 53 0.70
26 23 0.30
ACGTcount: A:0.23, C:0.25, G:0.04, T:0.49
Consensus pattern (25 bp):
TTTTTCCCAAATCCCTAACTTAGTT
Found at i:84917138 original size:51 final size:50
Alignment explanation
Indices: 84917075--84917179 Score: 183
Period size: 51 Copynumber: 2.1 Consensus size: 50
84917065 CCTCAAATCA
*
84917075 TTTTTCCCAAATCTCTAACTTAGTTTTTTTCCCTAAATCCCTAACTTAGTT
1 TTTTTCCCAAATCCCTAACTTAGTTTTTTTCCC-AAATCCCTAACTTAGTT
*
84917126 TTTTTCCTAAATCCCTAACTTAGTTTTTTTCCCAAATCCCTAACTTAGTT
1 TTTTTCCCAAATCCCTAACTTAGTTTTTTTCCCAAATCCCTAACTTAGTT
84917176 TTTT
1 TTTT
84917180 CTTTCCCATC
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
50 21 0.40
51 31 0.60
ACGTcount: A:0.23, C:0.25, G:0.04, T:0.49
Consensus pattern (50 bp):
TTTTTCCCAAATCCCTAACTTAGTTTTTTTCCCAAATCCCTAACTTAGTT
Found at i:84917969 original size:36 final size:36
Alignment explanation
Indices: 84917922--84917993 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
84917912 ATATTGTGTT
84917922 TGTATTTGGGAAAGAGACACAGAGGCAAAGACTTAA
1 TGTATTTGGGAAAGAGACACAGAGGCAAAGACTTAA
*
84917958 TGTATTTGGGAAAGAGACACAGAGGCAGAGACTTAA
1 TGTATTTGGGAAAGAGACACAGAGGCAAAGACTTAA
84917994 AGACAACTCC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.40, C:0.11, G:0.29, T:0.19
Consensus pattern (36 bp):
TGTATTTGGGAAAGAGACACAGAGGCAAAGACTTAA
Found at i:84918691 original size:44 final size:44
Alignment explanation
Indices: 84918628--84918717 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
84918618 ATCCTCATAA
84918628 TGCTCACCATTAGTCTGTTAGAGAAGATGACATGGAAGGTTTGT
1 TGCTCACCATTAGTCTGTTAGAGAAGATGACATGGAAGGTTTGT
84918672 TGCTCACCATTAGTCTGTTAGAGAAGATGACATGGAAGGTTTGT
1 TGCTCACCATTAGTCTGTTAGAGAAGATGACATGGAAGGTTTGT
84918716 TG
1 TG
84918718 TGGGATGCAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.32
Consensus pattern (44 bp):
TGCTCACCATTAGTCTGTTAGAGAAGATGACATGGAAGGTTTGT
Found at i:84920115 original size:66 final size:66
Alignment explanation
Indices: 84919970--84920173 Score: 266
Period size: 66 Copynumber: 3.1 Consensus size: 66
84919960 CAAATTGCTT
* * * * *
84919970 AACTTAAAGCGGAGGTAGCATTGAAAGAAATAGAGGCTAAAAAGAAAATATGCTGAACTCCATCT
1 AACTTAAAGCGGAGGTAGCATCGAGAGAAACAGAGGCT-AAAAGAAAATATGATGAACTCCAGCT
84920035 AC
65 AC
* **
84920037 AACTTAAAGCGGATGTAGCATCGAGAGAAACAGAGGCTAAAAGAAAATATGATGAACTTTAGCTA
1 AACTTAAAGCGGAGGTAGCATCGAGAGAAACAGAGGCTAAAAGAAAATATGATGAACTCCAGCTA
84920102 C
66 C
* * * * *
84920103 AACTTAAAGCGGAGGTAGCAGCGAGGGAAGCAGAAGC-AACAAGAAAATATGACGAACTCCAGCT
1 AACTTAAAGCGGAGGTAGCATCGAGAGAAACAGAGGCTAA-AAGAAAATATGATGAACTCCAGCT
84920167 AC
65 AC
84920169 AACTT
1 AACTT
84920174 CAAAATATGA
Statistics
Matches: 120, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
65 2 0.02
66 84 0.70
67 34 0.28
ACGTcount: A:0.44, C:0.16, G:0.23, T:0.17
Consensus pattern (66 bp):
AACTTAAAGCGGAGGTAGCATCGAGAGAAACAGAGGCTAAAAGAAAATATGATGAACTCCAGCTA
C
Found at i:84924096 original size:2 final size:2
Alignment explanation
Indices: 84924089--84924114 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
84924079 GGGTTAACGC
84924089 GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA
84924115 ATCGAAAGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Done.