Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 264 of 290
Found at i:85138999 original size:19 final size:20
Alignment explanation
Indices: 85138968--85139019 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
85138958 TACATATTTT
85138968 TCAATTTTAAATAAGTTT-TA
1 TCAATTTT-AATAAGTTTATA
*
85138988 TTAATTTTAATAAGTTTATA
1 TCAATTTTAATAAGTTTATA
*
85139008 TCAAATTTAATA
1 TCAATTTTAATA
85139020 TATTTTTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 9 0.32
20 19 0.68
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (20 bp):
TCAATTTTAATAAGTTTATA
Found at i:85139035 original size:7 final size:7
Alignment explanation
Indices: 85139018--85139067 Score: 52
Period size: 7 Copynumber: 7.4 Consensus size: 7
85139008 TCAAATTTAA
85139018 TATATTTT
1 TATA-TTT
85139026 TATATTT
1 TATATTT
85139033 TATATTT
1 TATATTT
85139040 T-T-TTT
1 TATATTT
85139045 TATATTT
1 TATATTT
* *
85139052 AATATTC
1 TATATTT
85139059 T-TATTT
1 TATATTT
85139065 TAT
1 TAT
85139068 TATAACTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
5 4 0.11
6 7 0.20
7 20 0.57
8 4 0.11
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (7 bp):
TATATTT
Found at i:85139037 original size:17 final size:17
Alignment explanation
Indices: 85139012--85139062 Score: 50
Period size: 17 Copynumber: 3.0 Consensus size: 17
85139002 TTTATATCAA
*
85139012 ATTTAATATATTTTTAT
1 ATTTTATATATTTTTAT
* *
85139029 ATTTTATATTTTTTTTT
1 ATTTTATATATTTTTAT
*
85139046 ATATTTA-ATATTCTTAT
1 AT-TTTATATATTTTTAT
85139063 TTTATTATAA
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
17 23 0.85
18 4 0.15
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTATATATTTTTAT
Found at i:85139067 original size:20 final size:20
Alignment explanation
Indices: 85139023--85139085 Score: 67
Period size: 19 Copynumber: 3.2 Consensus size: 20
85139013 TTTAATATAT
* *
85139023 TTTTATATTTTATATT-TTT
1 TTTTATATTTAATATTCTTA
85139042 TTTTATATTTAATATTCTTA
1 TTTTATATTTAATATTCTTA
* *
85139062 TTTTAT-TATAACTTTTCTTA
1 TTTTATATTTAA-TATTCTTA
85139082 TTTT
1 TTTT
85139086 TTTGATTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
19 19 0.50
20 19 0.50
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (20 bp):
TTTTATATTTAATATTCTTA
Found at i:85147336 original size:11 final size:11
Alignment explanation
Indices: 85147322--85147347 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
85147312 TCTTTATATA
85147322 TTTTTTAGAAT
1 TTTTTTAGAAT
85147333 TTTTTTAGAAT
1 TTTTTTAGAAT
85147344 TTTT
1 TTTT
85147348 ATGATTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (11 bp):
TTTTTTAGAAT
Found at i:85147384 original size:9 final size:9
Alignment explanation
Indices: 85147370--85147419 Score: 57
Period size: 9 Copynumber: 5.6 Consensus size: 9
85147360 TAAAAAATCT
85147370 ATTATTCGA
1 ATTATTCGA
*
85147379 ATTATTAGA
1 ATTATTCGA
85147388 ATTATTC-A
1 ATTATTCGA
85147396 AGTTATTCGA
1 A-TTATTCGA
* *
85147406 GTTATTTGA
1 ATTATTCGA
85147415 ATTAT
1 ATTAT
85147420 AAAATTCAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
8 2 0.06
9 31 0.91
10 1 0.03
ACGTcount: A:0.34, C:0.06, G:0.12, T:0.48
Consensus pattern (9 bp):
ATTATTCGA
Found at i:85150751 original size:13 final size:13
Alignment explanation
Indices: 85150735--85150760 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
85150725 ATTTTTATGT
85150735 AATCTTTTTTAAA
1 AATCTTTTTTAAA
85150748 AATCTTTTTTAAA
1 AATCTTTTTTAAA
85150761 GTTTTTAGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (13 bp):
AATCTTTTTTAAA
Found at i:85154114 original size:16 final size:16
Alignment explanation
Indices: 85154093--85154134 Score: 84
Period size: 16 Copynumber: 2.6 Consensus size: 16
85154083 ACGCTCCAAA
85154093 AATTGGGCCTAGAAAG
1 AATTGGGCCTAGAAAG
85154109 AATTGGGCCTAGAAAG
1 AATTGGGCCTAGAAAG
85154125 AATTGGGCCT
1 AATTGGGCCT
85154135 TAAGTCTAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.21
Consensus pattern (16 bp):
AATTGGGCCTAGAAAG
Found at i:85159137 original size:23 final size:23
Alignment explanation
Indices: 85159111--85159163 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
85159101 TGGGTTGAGT
85159111 ATATAAATATAAAAAAAGTAATA
1 ATATAAATATAAAAAAAGTAATA
*
85159134 ATATAAATATAAAAAAATTAATA
1 ATATAAATATAAAAAAAGTAATA
*
85159157 ATCTAAA
1 ATATAAA
85159164 CAACATAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (23 bp):
ATATAAATATAAAAAAAGTAATA
Found at i:85159365 original size:7 final size:7
Alignment explanation
Indices: 85159355--85159395 Score: 82
Period size: 7 Copynumber: 5.9 Consensus size: 7
85159345 TTAAGGATTT
85159355 AAAATTC
1 AAAATTC
85159362 AAAATTC
1 AAAATTC
85159369 AAAATTC
1 AAAATTC
85159376 AAAATTC
1 AAAATTC
85159383 AAAATTC
1 AAAATTC
85159390 AAAATT
1 AAAATT
85159396 TGAAGATTGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29
Consensus pattern (7 bp):
AAAATTC
Found at i:85159410 original size:15 final size:14
Alignment explanation
Indices: 85159362--85159419 Score: 53
Period size: 14 Copynumber: 4.1 Consensus size: 14
85159352 TTTAAAATTC
* * *
85159362 AAAATTCAAAATTC
1 AAAATTGAAGATTG
* * *
85159376 AAAATTCAAAATTC
1 AAAATTGAAGATTG
85159390 AAAATTTGAAGATTG
1 AAAA-TTGAAGATTG
85159405 AAAATTGAAGATTG
1 AAAATTGAAGATTG
85159419 A
1 A
85159420 GGATTAAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
14 29 0.73
15 11 0.28
ACGTcount: A:0.53, C:0.07, G:0.10, T:0.29
Consensus pattern (14 bp):
AAAATTGAAGATTG
Found at i:85159436 original size:14 final size:14
Alignment explanation
Indices: 85159419--85159447 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
85159409 TTGAAGATTG
85159419 AGGATTAAAAATTT
1 AGGATTAAAAATTT
85159433 AGGATTAAAAATTT
1 AGGATTAAAAATTT
85159447 A
1 A
85159448 AAAAGGAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (14 bp):
AGGATTAAAAATTT
Found at i:85161005 original size:18 final size:18
Alignment explanation
Indices: 85160982--85161022 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
85160972 AAAAAATTAT
*
85160982 TAAAATTTAAATATTTGA
1 TAAAATTTAAAAATTTGA
*
85161000 TAAAATTTAAAAATTTTA
1 TAAAATTTAAAAATTTGA
85161018 TAAAA
1 TAAAA
85161023 ATCAGAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.41
Consensus pattern (18 bp):
TAAAATTTAAAAATTTGA
Found at i:85161443 original size:13 final size:13
Alignment explanation
Indices: 85161425--85161451 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
85161415 TATTTTTAAA
85161425 ATTTTTAAAAAAT
1 ATTTTTAAAAAAT
85161438 ATTTTTAAAAAAT
1 ATTTTTAAAAAAT
85161451 A
1 A
85161452 ACTTTTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATTTTTAAAAAAT
Found at i:85161457 original size:14 final size:13
Alignment explanation
Indices: 85161427--85161460 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
85161417 TTTTTAAAAT
*
85161427 TTTTAAAAAATAT
1 TTTTAAAAAATAC
85161440 TTTTAAAAAATAAC
1 TTTTAAAAAAT-AC
85161454 TTTTAAA
1 TTTTAAA
85161461 TAATTTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTTAAAAAATAC
Found at i:85162841 original size:17 final size:18
Alignment explanation
Indices: 85162806--85162847 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
85162796 AAATATTTTT
85162806 TTAAAAATTAATAGTAAA
1 TTAAAAATTAATAGTAAA
*
85162824 -TAAAAATTAA-ATTAAAA
1 TTAAAAATTAATAGT-AAA
85162841 TTAAAAA
1 TTAAAAA
85162848 AAGCATAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 2 0.10
17 13 0.62
18 6 0.29
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (18 bp):
TTAAAAATTAATAGTAAA
Found at i:85172242 original size:46 final size:46
Alignment explanation
Indices: 85172182--85172273 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
85172172 AAAGAGAATA
85172182 TTACTTGGGATTTCTTCCAATCAGAGTTTAGGAAGAAATATATTAG
1 TTACTTGGGATTTCTTCCAATCAGAGTTTAGGAAGAAATATATTAG
*
85172228 TTACTTTGGATTTCTTCCAATCAGAGTTTAGGAAGAAATATATTAG
1 TTACTTGGGATTTCTTCCAATCAGAGTTTAGGAAGAAATATATTAG
85172274 CCAATGGTTT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (46 bp):
TTACTTGGGATTTCTTCCAATCAGAGTTTAGGAAGAAATATATTAG
Found at i:85175996 original size:25 final size:25
Alignment explanation
Indices: 85175968--85176018 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
85175958 TAGAGTATTT
85175968 TTGAAAGTATCTCCATGGAAAAAGG
1 TTGAAAGTATCTCCATGGAAAAAGG
85175993 TTGAAAGTATCTCCATGGAAAAAGG
1 TTGAAAGTATCTCCATGGAAAAAGG
85176018 T
1 T
85176019 ATTAAGATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.25
Consensus pattern (25 bp):
TTGAAAGTATCTCCATGGAAAAAGG
Found at i:85181828 original size:26 final size:26
Alignment explanation
Indices: 85181793--85181844 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
85181783 AATGTGAAAG
*
85181793 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
85181819 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
85181845 TTCAGCGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:85181862 original size:103 final size:105
Alignment explanation
Indices: 85181610--85181876 Score: 441
Period size: 105 Copynumber: 2.6 Consensus size: 105
85181600 TTGTATATAA
** *
85181610 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
85181674 TTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
85181715 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
85181780 TGAAATGTG-AAAGGGGGTTGCTATGTGCTGATT-CCCCG
66 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** *
85181818 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
85181877 ATAACGGTTA
Statistics
Matches: 153, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
103 60 0.39
104 24 0.16
105 68 0.44
106 1 0.01
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.30
Consensus pattern (105 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:85189205 original size:26 final size:26
Alignment explanation
Indices: 85189170--85189220 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
85189160 AATGTGAAAG
*
85189170 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
85189196 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
85189221 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:85189232 original size:103 final size:104
Alignment explanation
Indices: 85189092--85189314 Score: 369
Period size: 103 Copynumber: 2.2 Consensus size: 104
85189082 TGTATATAAA
** * *
85189092 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
85189156 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
85189195 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTT
85189260 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
85189299 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
85189315 GATATCCATT
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 90 0.80
104 22 0.20
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:85189366 original size:71 final size:72
Alignment explanation
Indices: 85189233--85189384 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
85189223 TCATTGGTGG
* *
85189233 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
85189298 GAGGGGT
66 GAGGGGT
***
85189305 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
85189369 GAGGGGT
66 GAGGGGT
85189376 TGCTAAGTG
1 TGCTAAGTG
85189385 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:85191280 original size:16 final size:16
Alignment explanation
Indices: 85191261--85191291 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
85191251 TTTTCATTAT
85191261 TATATTATTAAAATAA
1 TATATTATTAAAATAA
*
85191277 TATATTATTTAAATA
1 TATATTATTAAAATA
85191292 GGGGGTACAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TATATTATTAAAATAA
Found at i:85191837 original size:16 final size:16
Alignment explanation
Indices: 85191803--85191855 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
85191793 ATGGCATTAG
85191803 TCATGCAATACTCAAT
1 TCATGCAATACTCAAT
*
85191819 TCATG-AATACATCATT
1 TCATGCAATAC-TCAAT
* *
85191835 TCATACCATACTCAAT
1 TCATGCAATACTCAAT
85191851 TCATG
1 TCATG
85191856 AGTATATAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
15 5 0.17
16 21 0.70
17 4 0.13
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.34
Consensus pattern (16 bp):
TCATGCAATACTCAAT
Found at i:85193199 original size:28 final size:26
Alignment explanation
Indices: 85193146--85193199 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
85193136 TTAAGTAAAC
** *
85193146 ATATTATAATATATATTTTAACTTTA
1 ATATTATAATATATATAATAAATTTA
85193172 ATATTATAATATATATAAAATAAATTTA
1 ATATTATAATATATAT--AATAAATTTA
85193200 CACATGTAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 16 0.70
28 7 0.30
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (26 bp):
ATATTATAATATATATAATAAATTTA
Found at i:85195119 original size:26 final size:25
Alignment explanation
Indices: 85195090--85195168 Score: 77
Period size: 26 Copynumber: 3.0 Consensus size: 25
85195080 TTAATCACTT
85195090 TAATATTAAATTTAATCTAATATTTA
1 TAATATTAAA-TTAATCTAATATTTA
* * *
85195116 TAATATTACATTAAACTTAATATTAAA
1 TAATATTAAATTAATC-TAATATT-TA
* **
85195143 TATTATTAAATTAATAGAATATTTA
1 TAATATTAAATTAATCTAATATTTA
85195168 T
1 T
85195169 CTACAAGATA
Statistics
Matches: 42, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
25 7 0.17
26 22 0.52
27 13 0.31
ACGTcount: A:0.48, C:0.04, G:0.01, T:0.47
Consensus pattern (25 bp):
TAATATTAAATTAATCTAATATTTA
Found at i:85195158 original size:21 final size:24
Alignment explanation
Indices: 85195069--85195158 Score: 73
Period size: 26 Copynumber: 3.8 Consensus size: 24
85195059 AGAGTTCAAC
*
85195069 TATT-ATTAAACTTAATCACTTTAA
1 TATTAATTAAACTTAAT-ACTTAAA
* *
85195093 TATTAAATTTAA-TCTAATATTTATAA
1 TATT-AATTAAACT-TAATACTTA-AA
85195119 TATTACATTAAACTTAATA-TTAAA
1 TATTA-ATTAAACTTAATACTTAAA
85195143 TATT-ATTAAA-TTAATA
1 TATTAATTAAACTTAATA
85195159 GAATATTTAT
Statistics
Matches: 56, Mismatches: 4, Indels: 15
0.75 0.05 0.20
Matches are distributed among these distances:
21 6 0.11
22 6 0.11
24 10 0.18
25 8 0.14
26 25 0.45
27 1 0.02
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (24 bp):
TATTAATTAAACTTAATACTTAAA
Found at i:85199698 original size:23 final size:23
Alignment explanation
Indices: 85199655--85199699 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
85199645 GGATGTGAAT
*
85199655 GCTCCCTTTAATTGATGATAATA
1 GCTCCCTTTAATTGAAGATAATA
*
85199678 GCTCCTTTTAA-TGAAGAATAAT
1 GCTCCCTTTAATTGAAG-ATAAT
85199700 GTTCTCCCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (23 bp):
GCTCCCTTTAATTGAAGATAATA
Found at i:85199799 original size:9 final size:9
Alignment explanation
Indices: 85199785--85199857 Score: 61
Period size: 9 Copynumber: 8.6 Consensus size: 9
85199775 GACACCTGCA
85199785 ATTAAACAC
1 ATTAAACAC
85199794 ATTAAA-AC
1 ATTAAACAC
*
85199802 ---AAACAT
1 ATTAAACAC
85199808 ATTAAACAC
1 ATTAAACAC
85199817 ATTTAAACAC
1 A-TTAAACAC
85199827 TTATTAAACAC
1 --ATTAAACAC
85199838 A--AAACAC
1 ATTAAACAC
85199845 ATTAAACAC
1 ATTAAACAC
85199854 -TTAA
1 ATTAA
85199858 CTTAAATAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 19
0.72 0.03 0.26
Matches are distributed among these distances:
5 3 0.06
6 1 0.02
7 7 0.13
8 6 0.11
9 19 0.36
10 8 0.15
11 8 0.15
12 1 0.02
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.25
Consensus pattern (9 bp):
ATTAAACAC
Found at i:85199833 original size:11 final size:11
Alignment explanation
Indices: 85199785--85199838 Score: 58
Period size: 10 Copynumber: 4.9 Consensus size: 11
85199775 GACACCTGCA
85199785 ATTAAACACAT
1 ATTAAACACAT
*
85199796 -TAAAACAAACAT
1 ATTAAAC--ACAT
85199808 ATTAAACACAT
1 ATTAAACACAT
*
85199819 -TTAAACACTT
1 ATTAAACACAT
85199829 ATTAAACACA
1 ATTAAACACA
85199839 AAACACATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
10 14 0.40
11 12 0.34
12 4 0.11
13 5 0.14
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.26
Consensus pattern (11 bp):
ATTAAACACAT
Found at i:85199833 original size:21 final size:22
Alignment explanation
Indices: 85199785--85199838 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 22
85199775 GACACCTGCA
85199785 ATTAAACACATTAAAACAAACAT
1 ATTAAACACATTAAAAC-AACAT
* *
85199808 ATTAAACACATTTAAAC-ACTT
1 ATTAAACACATTAAAACAACAT
85199829 ATTAAACACA
1 ATTAAACACA
85199839 AAACACATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 13 0.45
23 16 0.55
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.26
Consensus pattern (22 bp):
ATTAAACACATTAAAACAACAT
Found at i:85203038 original size:27 final size:26
Alignment explanation
Indices: 85202998--85203063 Score: 71
Period size: 26 Copynumber: 2.4 Consensus size: 26
85202988 AAAAATAAAG
85202998 AAGAAAAATGAAAAGTTAAA-AGCTCATAA
1 AAGAAAAA--AAAA-TTAAATAGCTCA-AA
*
85203027 AAGAAAAAAAAATTAAATTGCTCAAA
1 AAGAAAAAAAAATTAAATAGCTCAAA
*
85203053 ACGAAAAAAAA
1 AAGAAAAAAAA
85203064 GGACTCATTG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
26 17 0.50
27 9 0.26
29 8 0.24
ACGTcount: A:0.67, C:0.08, G:0.11, T:0.15
Consensus pattern (26 bp):
AAGAAAAAAAAATTAAATAGCTCAAA
Found at i:85204161 original size:19 final size:19
Alignment explanation
Indices: 85204122--85204162 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
85204112 TGGTAATTTG
*
85204122 TTTGTTGTTATCATTTGCT
1 TTTGTTGTTATCATTGGCT
85204141 TTTGTTGTTAT-ATTGGTCT
1 TTTGTTGTTATCATTGG-CT
85204160 TTT
1 TTT
85204163 TTTTTTCTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.10, C:0.07, G:0.17, T:0.66
Consensus pattern (19 bp):
TTTGTTGTTATCATTGGCT
Found at i:85208181 original size:7 final size:7
Alignment explanation
Indices: 85208169--85208194 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
85208159 TAATTGAAAA
85208169 AAAATAT
1 AAAATAT
85208176 AAAATAT
1 AAAATAT
85208183 AAAATAT
1 AAAATAT
85208190 AAAAT
1 AAAAT
85208195 TGAAAGCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
AAAATAT
Found at i:85209600 original size:20 final size:20
Alignment explanation
Indices: 85209577--85209623 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
85209567 AGCTCCGTTC
85209577 AGCTCAAACCAGCTCATTTG
1 AGCTCAAACCAGCTCATTTG
** *
85209597 AGCTCATTCCAGCTCGTTTG
1 AGCTCAAACCAGCTCATTTG
85209617 AGCTCAA
1 AGCTCAA
85209624 TTCCGTTTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.28
Consensus pattern (20 bp):
AGCTCAAACCAGCTCATTTG
Found at i:85213640 original size:18 final size:17
Alignment explanation
Indices: 85213606--85213697 Score: 66
Period size: 17 Copynumber: 5.4 Consensus size: 17
85213596 ATTTTAATAG
85213606 ATTTAATATTAAATTAA
1 ATTTAATATTAAATTAA
*
85213623 ATTTAATACTTAACTT-A
1 ATTTAATA-TTAAATTAA
* **
85213640 A--TAGTATTTTATT-A
1 ATTTAATATTAAATTAA
* *
85213654 ATTTAATATTAAAGTGATT
1 ATTTAATATTAAA-TTA-A
85213673 ATCTTAATATTAAATTAA
1 AT-TTAATATTAAATTAA
85213691 ATTTAAT
1 ATTTAAT
85213698 GTTTATCTTG
Statistics
Matches: 56, Mismatches: 12, Indels: 14
0.68 0.15 0.17
Matches are distributed among these distances:
14 6 0.11
15 4 0.07
16 7 0.12
17 16 0.29
18 8 0.14
19 4 0.07
20 11 0.20
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.49
Consensus pattern (17 bp):
ATTTAATATTAAATTAA
Found at i:85213684 original size:31 final size:29
Alignment explanation
Indices: 85213649--85213706 Score: 71
Period size: 31 Copynumber: 1.9 Consensus size: 29
85213639 AATAGTATTT
*
85213649 TATTAATTTAATATTAAAGTGATTATCTTAA
1 TATTAAATTAA-ATTAAA-TGATTATCTTAA
* *
85213680 TATTAAATTAAATTTAATGTTTATCTT
1 TATTAAATTAAATTAAATGATTATCTT
85213707 GTAGACAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 9 0.38
30 5 0.21
31 10 0.42
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.52
Consensus pattern (29 bp):
TATTAAATTAAATTAAATGATTATCTTAA
Found at i:85213791 original size:59 final size:62
Alignment explanation
Indices: 85213676--85213792 Score: 150
Period size: 62 Copynumber: 1.9 Consensus size: 62
85213666 AGTGATTATC
* * *
85213676 TTAATATTAAATTAAATTTAATGTTTATCTTGTAGACAAATATTCCATTAATTTAATAATAT
1 TTAATATTAAATTAAATCTAATGTTTATCATGTAGACAAATATTACATTAATTTAATAATAT
* * * *
85213738 TTAATATTAAATTTAATCTAATTTTTAT-AT-T-GATAAATATTATATTAATTTAATA
1 TTAATATTAAATTAAATCTAATGTTTATCATGTAGACAAATATTACATTAATTTAATA
85213793 TTATAGTGAT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
59 21 0.44
60 1 0.02
61 1 0.02
62 25 0.52
ACGTcount: A:0.43, C:0.04, G:0.03, T:0.50
Consensus pattern (62 bp):
TTAATATTAAATTAAATCTAATGTTTATCATGTAGACAAATATTACATTAATTTAATAATAT
Found at i:85223840 original size:71 final size:71
Alignment explanation
Indices: 85223731--85223898 Score: 194
Period size: 71 Copynumber: 2.4 Consensus size: 71
85223721 TTGATGCTAC
* * ** * ** * *
85223731 TCACTCAAGTTGTCGAAAATCTATAACTTATGTTGGATCTTAGTCATCGCTAAATAATAATTCAA
1 TCACTCAAGCTGTCGAGAATCTGCAACTTATGTTGGATCTCAACCACCACTAAATAATAATTCAA
*
85223796 TGCTT-T
66 T-ATTGT
* * *
85223802 TCACTCAAGCTGTCGAGAATCTGCAACTTATGTTGGATCTCAACCACCATTAAATAATGATTCGA
1 TCACTCAAGCTGTCGAGAATCTGCAACTTATGTTGGATCTCAACCACCACTAAATAATAATTCAA
85223867 TATTGT
66 TATTGT
*
85223873 TCACTCAAGCTGTCAAGAATCTGCAA
1 TCACTCAAGCTGTCGAGAATCTGCAA
85223899 GATTACTCAA
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
70 2 0.02
71 80 0.98
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.33
Consensus pattern (71 bp):
TCACTCAAGCTGTCGAGAATCTGCAACTTATGTTGGATCTCAACCACCACTAAATAATAATTCAA
TATTGT
Found at i:85225286 original size:24 final size:24
Alignment explanation
Indices: 85225258--85225321 Score: 83
Period size: 25 Copynumber: 2.6 Consensus size: 24
85225248 AGAAGATTTC
* *
85225258 TTTCTTGTGATTTTTAGAAATAGT
1 TTTCTTTTGATTTTTAGAAATAAT
*
85225282 TTTCTTCTTGATTTTTAGAAGTAAT
1 TTTCTT-TTGATTTTTAGAAATAAT
85225307 TTTCTTTTTGATTTT
1 TTTC-TTTTGATTTT
85225322 ATTCAAGGAG
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
24 6 0.17
25 27 0.77
26 2 0.06
ACGTcount: A:0.20, C:0.06, G:0.12, T:0.61
Consensus pattern (24 bp):
TTTCTTTTGATTTTTAGAAATAAT
Found at i:85225293 original size:25 final size:25
Alignment explanation
Indices: 85225265--85225321 Score: 87
Period size: 25 Copynumber: 2.3 Consensus size: 25
85225255 TTCTTTCTTG
*
85225265 TGATTTTTAGAAATAGTTTTCTTCT
1 TGATTTTTAGAAATAATTTTCTTCT
* *
85225290 TGATTTTTAGAAGTAATTTTCTTTT
1 TGATTTTTAGAAATAATTTTCTTCT
85225315 TGATTTT
1 TGATTTT
85225322 ATTCAAGGAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.23, C:0.05, G:0.12, T:0.60
Consensus pattern (25 bp):
TGATTTTTAGAAATAATTTTCTTCT
Found at i:85226832 original size:9 final size:9
Alignment explanation
Indices: 85226777--85226835 Score: 73
Period size: 9 Copynumber: 6.6 Consensus size: 9
85226767 TTTATACAAA
85226777 TAATTCGGT
1 TAATTCGGT
* *
85226786 TAATTTGGG
1 TAATTCGGT
*
85226795 TAATTCGGG
1 TAATTCGGT
85226804 TAATTCGGT
1 TAATTCGGT
*
85226813 TAAGTCGGT
1 TAATTCGGT
*
85226822 TAATTCAGT
1 TAATTCGGT
85226831 TAATT
1 TAATT
85226836 TTATACTTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 43 1.00
ACGTcount: A:0.25, C:0.08, G:0.24, T:0.42
Consensus pattern (9 bp):
TAATTCGGT
Found at i:85227545 original size:17 final size:17
Alignment explanation
Indices: 85227518--85227558 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
85227508 GGTAATCATT
85227518 TTAATATTAAA-TTAAGTA
1 TTAA-ATTAAATTTAA-TA
85227536 TTAAATTAAATTTAATA
1 TTAAATTAAATTTAATA
85227553 TTAAAT
1 TTAAAT
85227559 CTATTAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 14 0.64
18 8 0.36
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (17 bp):
TTAAATTAAATTTAATA
Found at i:85230338 original size:47 final size:48
Alignment explanation
Indices: 85230264--85230393 Score: 155
Period size: 46 Copynumber: 2.8 Consensus size: 48
85230254 AACCTGCCCC
*
85230264 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-T
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACATCT
* *
85230312 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCT
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT-CT
*
85230357 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
85230394 TCAACCATCC
Statistics
Matches: 70, Mismatches: 5, Indels: 13
0.80 0.06 0.15
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 1 0.01
45 3 0.04
46 29 0.41
47 29 0.41
48 2 0.03
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (48 bp):
TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCT
Found at i:85230409 original size:46 final size:46
Alignment explanation
Indices: 85230262--85230409 Score: 144
Period size: 46 Copynumber: 3.2 Consensus size: 46
85230252 GTAACCTGCC
85230262 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACAT
* * * *** *
85230311 -TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT
85230354 CCTTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA-CAT
85230402 CCT-AGTGA
1 CCTAAGTGA
85230410 CATGTCACTT
Statistics
Matches: 79, Mismatches: 14, Indels: 15
0.73 0.13 0.14
Matches are distributed among these distances:
43 3 0.04
45 2 0.03
46 36 0.46
47 30 0.38
48 8 0.10
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (46 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT
Found at i:85234588 original size:46 final size:46
Alignment explanation
Indices: 85234521--85234738 Score: 284
Period size: 46 Copynumber: 4.7 Consensus size: 46
85234511 AACCCGCCCC
* * *
85234521 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
85234567 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
85234615 TCA-CGAACTC-GACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
85234659 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAAATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
85234705 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
85234739 TGCTCAACCA
Statistics
Matches: 150, Mismatches: 12, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
41 2 0.01
42 4 0.03
43 1 0.01
44 2 0.01
45 6 0.04
46 121 0.81
47 6 0.04
48 2 0.01
49 1 0.01
50 3 0.02
51 2 0.01
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:85235187 original size:30 final size:30
Alignment explanation
Indices: 85235153--85235212 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
85235143 ATTTAATACG
85235153 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
85235183 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
85235213 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:85242215 original size:47 final size:48
Alignment explanation
Indices: 85242141--85242270 Score: 155
Period size: 46 Copynumber: 2.8 Consensus size: 48
85242131 AACCTGCCCC
*
85242141 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-T
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACATCT
* *
85242189 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCT
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT-CT
*
85242234 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
85242271 TCAACCATCC
Statistics
Matches: 70, Mismatches: 5, Indels: 13
0.80 0.06 0.15
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 1 0.01
45 3 0.04
46 29 0.41
47 29 0.41
48 2 0.03
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (48 bp):
TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCT
Found at i:85242286 original size:46 final size:46
Alignment explanation
Indices: 85242139--85242286 Score: 144
Period size: 46 Copynumber: 3.2 Consensus size: 46
85242129 GTAACCTGCC
85242139 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACAT
* * * *** *
85242188 -TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT
85242231 CCTTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA-CAT
85242279 CCT-AGTGA
1 CCTAAGTGA
85242287 CATGTCACTT
Statistics
Matches: 79, Mismatches: 14, Indels: 15
0.73 0.13 0.14
Matches are distributed among these distances:
43 3 0.04
45 2 0.03
46 36 0.46
47 30 0.38
48 8 0.10
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (46 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT
Found at i:85242722 original size:30 final size:30
Alignment explanation
Indices: 85242688--85242747 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
85242678 ATTTAATACG
85242688 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
85242718 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
85242748 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:85248653 original size:27 final size:27
Alignment explanation
Indices: 85248582--85248720 Score: 183
Period size: 27 Copynumber: 5.2 Consensus size: 27
85248572 CAATTTGTAA
* *
85248582 AATTACCATTTTA-CCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTACAG
85248608 AATTACC-TTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
85248634 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
* *
85248661 AATTATCGTTTCACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
* * * * *
85248688 AATTATCGTTTTACCATTGATTTATAA
1 AATTACCGTTTTACCCTCGATTTACAG
85248715 AATTAC
1 AATTAC
85248721 TGAAATACCC
Statistics
Matches: 102, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
25 5 0.05
26 26 0.25
27 71 0.70
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
AATTACCGTTTTACCCTCGATTTACAG
Found at i:85248770 original size:54 final size:54
Alignment explanation
Indices: 85248705--85248921 Score: 233
Period size: 54 Copynumber: 4.0 Consensus size: 54
85248695 GTTTTACCAT
* ** * * ** *
85248705 TGATTTATAAAATTACTGAAATACCCTTGGTTTAAAAAATTACCAAAA-AACCC
1 TGATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCC
* *
85248758 TCGATTAGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCC
1 T-GATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCC
* *
85248813 TGGTTTGTAAAATTACCAAAATACCCCTAGCTTGTAAAATTACCAAAATACCCC
1 TGATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCC
* * * * * *
85248867 TGATTTGTGAAATTATCGAAATA-CTCTCGATTTGTAAAA-TATCAAAATACCCC
1 TGATTTGTAAAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCC
85248920 TG
1 TG
85248922 TAGGGTAGAA
Statistics
Matches: 139, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
53 20 0.14
54 114 0.82
55 5 0.04
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
TGATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCC
Found at i:85248797 original size:81 final size:81
Alignment explanation
Indices: 85248705--85248890 Score: 243
Period size: 81 Copynumber: 2.3 Consensus size: 81
85248695 GTTTTACCAT
* * *
85248705 TGATTTATAAAATTACTGAAATACCCTTGGTTTAAAAAATTACCAAAA-AACCCTCGATTAGTAA
1 TGATTTGTAAAATTACTGAAATACCCCTGGTTTAAAAAATTACCAAAATAACCCTAGATT-GTAA
85248769 AATTACCAAAATACCCC
65 AATTACCAAAATACCCC
* ** * *
85248786 T-AGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGCTTGTAA
1 TGA-TTTGTAAAATTACTGAAATACCCCTGGTTTAAAAAATTACCAAAATAACCCTAGATTGTAA
85248850 AATTACCAAAATACCCC
65 AATTACCAAAATACCCC
*
85248867 TGATTTGTGAAATTA-TCGAAATAC
1 TGATTTGTAAAATTACT-GAAATAC
85248891 TCTCGATTTG
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
80 2 0.02
81 80 0.88
82 9 0.10
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.30
Consensus pattern (81 bp):
TGATTTGTAAAATTACTGAAATACCCCTGGTTTAAAAAATTACCAAAATAACCCTAGATTGTAAA
ATTACCAAAATACCCC
Found at i:85248874 original size:27 final size:27
Alignment explanation
Indices: 85248705--85248921 Score: 210
Period size: 27 Copynumber: 8.1 Consensus size: 27
85248695 GTTTTACCAT
* ** *
85248705 TGATTTATAAAATTACTGAAATACCCT
1 TGATTTGTAAAATTACCAAAATACCCC
* ** *
85248732 TGGTTTAAAAAATTACCAAAA-AACCC
1 TGATTTGTAAAATTACCAAAATACCCC
*
85248758 TCGATTAGTAAAATTACCAAAATACCCC
1 T-GATTTGTAAAATTACCAAAATACCCC
*
85248786 T-AGTTTGTAAAATTACTAAAATACCCC
1 TGA-TTTGTAAAATTACCAAAATACCCC
*
85248813 TGGTTTGTAAAATTACCAAAATACCCC
1 TGATTTGTAAAATTACCAAAATACCCC
*
85248840 T-AGCTTGTAAAATTACCAAAATACCCC
1 TGA-TTTGTAAAATTACCAAAATACCCC
* * * *
85248867 TGATTTGTGAAATTATCGAAATA-CTC
1 TGATTTGTAAAATTACCAAAATACCCC
*
85248893 TCGATTTGTAAAA-TATCAAAATACCCC
1 T-GATTTGTAAAATTACCAAAATACCCC
85248920 TG
1 TG
85248922 TAGGGTAGAA
Statistics
Matches: 157, Mismatches: 25, Indels: 17
0.79 0.13 0.09
Matches are distributed among these distances:
26 18 0.11
27 133 0.85
28 6 0.04
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
TGATTTGTAAAATTACCAAAATACCCC
Found at i:85248901 original size:81 final size:82
Alignment explanation
Indices: 85248712--85248920 Score: 232
Period size: 81 Copynumber: 2.6 Consensus size: 82
85248702 CATTGATTTA
* * * ** * *
85248712 TAAAATTACTGAAATACCCTTGGTTTAAAAAATTACCAAAA-AACCCTCGATTAGTAAAATTACC
1 TAAAATTACTAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTAGATTAGTAAAATTACC
85248776 AAAATACCCCTAGTTTG
66 AAAATACCCCTAGTTTG
* *
85248793 TAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGCTT-GTAAAATTACC
1 TAAAATTACTAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTAGATTAGTAAAATTACC
85248857 AAAATACCCCT-GATTTG
66 AAAATACCCCTAG-TTTG
* * * *
85248874 TGAAATTA-TCGAAATA-CTCTCGATTTGTAAAA-TATCAAAATACCCCT
1 TAAAATTACT-AAAATACCCCT-GATTTGTAAAATTACCAAAATACCCCT
85248921 GTAGGGTAGA
Statistics
Matches: 112, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
80 19 0.17
81 85 0.76
82 8 0.07
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.30
Consensus pattern (82 bp):
TAAAATTACTAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTAGATTAGTAAAATTACC
AAAATACCCCTAGTTTG
Found at i:85248950 original size:27 final size:27
Alignment explanation
Indices: 85248911--85249124 Score: 250
Period size: 27 Copynumber: 8.0 Consensus size: 27
85248901 TAAAATATCA
*
85248911 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * **
85248938 AAATAACCTTGTAGGGTAAAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCG
*
85248965 AAATAACCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* **
85248992 AAATACCCCTGTAGAG-AGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
85249018 AAATACCCTTATATGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
85249045 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
85249072 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
85249099 AGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
85249125 ATTTTGCCCC
Statistics
Matches: 159, Mismatches: 27, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 20 0.13
27 139 0.87
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:85248988 original size:107 final size:107
Alignment explanation
Indices: 85248910--85249106 Score: 288
Period size: 107 Copynumber: 1.8 Consensus size: 107
85248900 GTAAAATATC
* * *
85248910 AAAATACCCCTGTAGGGTAGAATTACTGAAATAACCTTGTAGGGTA-AAATTACTAAAATAACCC
1 AAAATACCCCTATAGGGTAGAATTACCGAAATAACCTTGTAGGGTAGAAA-TACCAAAATAACCC
*
85248974 TGTAGGGTAGAATTACCGAAATACCCCTGTAGAGAGAATTACT
65 TGTAGGGTAGAATTACCGAAATACCCATGTAGAGAGAATTACT
* * * * *
85249017 AAAATACCCTTATATGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCT
1 AAAATACCCCTATAGGGTAGAATTACCGAAATAACCTTGTAGGGTAGAAATACCAAAATAACCCT
*
85249082 GTAGGGTAGAATTACCGAGATACCC
66 GTAGGGTAGAATTACCGAAATACCC
85249107 TTGTGGGGTA
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
107 77 0.96
108 3 0.04
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (107 bp):
AAAATACCCCTATAGGGTAGAATTACCGAAATAACCTTGTAGGGTAGAAATACCAAAATAACCCT
GTAGGGTAGAATTACCGAAATACCCATGTAGAGAGAATTACT
Found at i:85249135 original size:54 final size:54
Alignment explanation
Indices: 85248900--85249125 Score: 287
Period size: 54 Copynumber: 4.2 Consensus size: 54
85248890 CTCTCGATTT
* * *
85248900 GTAAAA-TATCAAAATACCCCTGTAGGGTAGAATTACTGAAATAACCTTGTAGG
1 GTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGG
* * * *
85248953 GTAAAATTACTAAAATAACCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGA
1 GTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGG
* * * * *
85249007 G-AGAATTACTAAAATACCCTTATATGGTAGAATTACCGAAATACCCTTGTAGG
1 GTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGG
* * *
85249060 GTAGAAA-TACCGAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGG
1 GTA-AAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGG
85249114 GTAAAATTACCA
1 GTAAAATTACCA
85249126 TTTTGCCCCT
Statistics
Matches: 146, Mismatches: 23, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
53 55 0.38
54 89 0.61
55 2 0.01
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (54 bp):
GTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGG
Found at i:85249365 original size:25 final size:25
Alignment explanation
Indices: 85249327--85249421 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
85249317 AGGAAGTGCT
* *
85249327 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTAACG
85249352 AAAAGGGCTTTGCCCCAGTTTAACG
1 AAAAGGGCTTTGCCCCAGTTTAACG
* *
85249377 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTAACG
*
85249402 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
85249422 ATTAAAAGAG
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTAACG
Found at i:85249434 original size:24 final size:25
Alignment explanation
Indices: 85249327--85249434 Score: 109
Period size: 25 Copynumber: 4.4 Consensus size: 25
85249317 AGGAAGTGCT
* *
85249327 AAAAG-GGCTATGCCCCAGTTTACC
1 AAAAGAGGCTTTGCCCCAGTTTATC
*
85249351 GAAAAG-GGCTTTGCCCCAGTTTAAC
1 -AAAAGAGGCTTTGCCCCAGTTTATC
85249376 GAAAAG-GGCTTTGCCCCAGTTTATC
1 -AAAAGAGGCTTTGCCCCAGTTTATC
* *
85249401 AAAA-AGGGCTTTGCCCTAG-TTATT
1 AAAAGA-GGCTTTGCCCCAGTTTATC
85249425 AAAAGAGGCT
1 AAAAGAGGCT
85249435 AGGCCTCCAG
Statistics
Matches: 75, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
24 16 0.21
25 59 0.79
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGTTTATC
Found at i:85249445 original size:50 final size:50
Alignment explanation
Indices: 85249325--85249446 Score: 149
Period size: 50 Copynumber: 2.4 Consensus size: 50
85249315 GGAGGAAGTG
*
85249325 CTAAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTAA
1 CTAAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTAA
* * * *
85249375 CGAAAAGGGCTTTGCCCCAGTTTATCAAAAAGGGCTTTGCCCTAG-TT-A
1 CTAAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTAA
* *
85249423 TTAAAAGAGGCTAGGCCTCCAGTT
1 CTAAAAG-GGCTATGCC-CCAGTT
85249447 ATATGATGAA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
48 6 0.10
49 9 0.15
50 46 0.75
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (50 bp):
CTAAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTAA
Found at i:85264392 original size:30 final size:29
Alignment explanation
Indices: 85264358--85264442 Score: 109
Period size: 30 Copynumber: 2.8 Consensus size: 29
85264348 AAACATTTTT
85264358 ACTTTTCCCTCAAAACTTTTACTCCTTCCC
1 ACTTTTCCC-CAAAACTTTTACTCCTTCCC
*
85264388 AC-TTTCTCCCAAAACTTTTTACTCATTCCC
1 ACTTTTC-CCCAAAAC-TTTTACTCCTTCCC
*
85264418 ACTTTCTCCCAAAAACTTTTACTCC
1 ACTTT-TCCCCAAAACTTTTACTCC
85264443 CCTTCCATCC
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
29 10 0.21
30 27 0.56
31 9 0.19
32 2 0.04
ACGTcount: A:0.24, C:0.38, G:0.00, T:0.39
Consensus pattern (29 bp):
ACTTTTCCCCAAAACTTTTACTCCTTCCC
Found at i:85264589 original size:30 final size:29
Alignment explanation
Indices: 85264541--85264598 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
85264531 AAGCTTTTTA
85264541 TTTCCCCAAAAATTTTAC-TCCCTCCCAC
1 TTTCCCCAAAAATTTTACTTCCCTCCCAC
* *
85264569 TTTCCTCCTAAAATTTTTACTTCCTTCCCA
1 TTTCC-CC-AAAAATTTTACTTCCCTCCCA
85264599 TCCCACCTCC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 5 0.20
29 2 0.08
30 10 0.40
31 8 0.32
ACGTcount: A:0.22, C:0.38, G:0.00, T:0.40
Consensus pattern (29 bp):
TTTCCCCAAAAATTTTACTTCCCTCCCAC
Found at i:85267939 original size:40 final size:40
Alignment explanation
Indices: 85267879--85268062 Score: 230
Period size: 40 Copynumber: 4.6 Consensus size: 40
85267869 TATTCAAATG
*
85267879 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
85267919 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * **
85267959 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCAACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
85267999 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
85268039 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
85268063 CTTGTGCGAG
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
40 121 0.98
41 3 0.02
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:85268012 original size:80 final size:80
Alignment explanation
Indices: 85267879--85268062 Score: 255
Period size: 80 Copynumber: 2.3 Consensus size: 80
85267869 TATTCAAATG
* * **
85267879 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCAACTATATCCGGACTAAG-TCCCGAAGGC
* *
85267943 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
* *
85267959 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCAACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCAACTATATCCGGACTAAGTCCCGAAGGCA
*
85268024 TTTATGCTAGTGACC
66 TTTATGCGAGTGACC
85268039 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
85268063 CTTGTGCGAG
Statistics
Matches: 93, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 3 0.03
80 90 0.97
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCAACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:85271372 original size:22 final size:22
Alignment explanation
Indices: 85271344--85271388 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
85271334 TTTAAGTTTG
85271344 TATTTTCTTTCCTATTCTAATT
1 TATTTTCTTTCCTATTCTAATT
85271366 TATTTTCTTTCCTATTCTAATT
1 TATTTTCTTTCCTATTCTAATT
85271388 T
1 T
85271389 TTCTCTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.64
Consensus pattern (22 bp):
TATTTTCTTTCCTATTCTAATT
Found at i:85276200 original size:324 final size:326
Alignment explanation
Indices: 85275608--85276259 Score: 1254
Period size: 324 Copynumber: 2.0 Consensus size: 326
85275598 CTTAGCTATG
85275608 TTTTGTTCTTCTATGTATTTGACTTGTTCTTAAAAAAAACAACAACAACAACAATACTTACATAC
1 TTTTGTTCTTCTATGTATTTGACTTGTTCTT-AAAAAAACAACAACAACAACAATACTTACATAC
*
85275673 ATATTAGTAGTAATTCGCCATTTTTTGAGCTTGAGTGTTAATTCCATATTCTGAGAAAAAGCTCA
65 ATATTAGTAGTAATTCGCCATTTTTTAAGCTTGAGTGTTAATTCCATATTCTGAGAAAAAGCTCA
85275738 CTTGTATTCAACTGAATAGTAGTCATTTTTCTAGATAGGTAATTTTTCAATTCAATCTCGATTCT
130 CTTGTATTCAACTGAATAGTAGTCATTTTTCTAGATAGGTAATTTTTCAATTCAATCTCGATTCT
85275803 AACCTTTTCTTTTCACTTGTGACCATACCCTCTAACCAAAGCCACGTTACAACCCTCTAAAGACC
195 AACCTTTTCTTTTCACTTGTGACCATACCCTCTAACCAAAGCCACGTTACAACCCTCTAAAGACC
85275868 TTTTTGATTGAGGTATCATCTCAATATATAGTGGTGGAGATTTGATTTTTAAGCAAGCCTATGGT
260 TTTTTGATTGAGGTATCATCTCAATATATAGTGGTGGAGATTTGATTTTTAAGCAAGCCTATGGT
85275933 AA
325 AA
85275935 TTTTGTTCTTCTATGTATTTGACTTGTTCTT-AAAAAA-AACAACAACAACAATACTTACATACA
1 TTTTGTTCTTCTATGTATTTGACTTGTTCTTAAAAAAACAACAACAACAACAATACTTACATACA
*
85275998 TATTAGTAGTAATTTGCCATTTTTTAAGCTTGAGTGTTAATTCCATATTCTGAGAAAAAGCTCAC
66 TATTAGTAGTAATTCGCCATTTTTTAAGCTTGAGTGTTAATTCCATATTCTGAGAAAAAGCTCAC
85276063 TTGTATTCAACTGAATAGTAGTCATTTTTCTAGATAGGTAATTTTTCAATTCAATCTCGATTCTA
131 TTGTATTCAACTGAATAGTAGTCATTTTTCTAGATAGGTAATTTTTCAATTCAATCTCGATTCTA
*
85276128 ACCTTTTCTTTTCGCTTGTGACCATACCCTCTAACCAAAGCCACGTTACAACCCTCTAAAGACCT
196 ACCTTTTCTTTTCACTTGTGACCATACCCTCTAACCAAAGCCACGTTACAACCCTCTAAAGACCT
85276193 TTTTGATTGAGGTATCATCTCAATATATAGTGGTGGAGATTTGATTTTTAAGCAAGCCTATGGTA
261 TTTTGATTGAGGTATCATCTCAATATATAGTGGTGGAGATTTGATTTTTAAGCAAGCCTATGGTA
85276258 A
326 A
85276259 T
1 T
85276260 AACTTCTCAT
Statistics
Matches: 322, Mismatches: 3, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
324 285 0.89
325 6 0.02
327 31 0.10
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (326 bp):
TTTTGTTCTTCTATGTATTTGACTTGTTCTTAAAAAAACAACAACAACAACAATACTTACATACA
TATTAGTAGTAATTCGCCATTTTTTAAGCTTGAGTGTTAATTCCATATTCTGAGAAAAAGCTCAC
TTGTATTCAACTGAATAGTAGTCATTTTTCTAGATAGGTAATTTTTCAATTCAATCTCGATTCTA
ACCTTTTCTTTTCACTTGTGACCATACCCTCTAACCAAAGCCACGTTACAACCCTCTAAAGACCT
TTTTGATTGAGGTATCATCTCAATATATAGTGGTGGAGATTTGATTTTTAAGCAAGCCTATGGTA
A
Found at i:85284063 original size:13 final size:13
Alignment explanation
Indices: 85284045--85284069 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85284035 TCCAAGTTTC
85284045 TTTTTCTTTTTTT
1 TTTTTCTTTTTTT
85284058 TTTTTCTTTTTT
1 TTTTTCTTTTTT
85284070 GATCCATATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (13 bp):
TTTTTCTTTTTTT
Found at i:85292657 original size:24 final size:23
Alignment explanation
Indices: 85292625--85292672 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 23
85292615 GAATCATTGA
85292625 ATGATGACGTGGTAGATTATATG
1 ATGATGACGTGGTAGATTATATG
*
85292648 ATGATTGACGTGGTAGTTTATATG
1 ATGA-TGACGTGGTAGATTATATG
85292672 A
1 A
85292673 AAAATTGATG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 4 0.17
24 19 0.83
ACGTcount: A:0.29, C:0.04, G:0.29, T:0.38
Consensus pattern (23 bp):
ATGATGACGTGGTAGATTATATG
Found at i:85293621 original size:11 final size:12
Alignment explanation
Indices: 85293579--85293624 Score: 56
Period size: 12 Copynumber: 3.6 Consensus size: 12
85293569 AAAATTATAC
*
85293579 TTTTTTTATTAA
1 TTTTTTTTTTAA
85293591 TTTATATATTTTTAA
1 TTT-T-T-TTTTTAA
85293606 TTTTTTTTTTAA
1 TTTTTTTTTTAA
85293618 TTTTTTT
1 TTTTTTT
85293625 AAATTTATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
12 17 0.57
13 2 0.07
14 2 0.07
15 9 0.30
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTTTTTTTTAA
Found at i:85299496 original size:9 final size:9
Alignment explanation
Indices: 85299482--85299511 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
85299472 GATCGAGTAA
85299482 AATTAAATT
1 AATTAAATT
85299491 AATTAAATT
1 AATTAAATT
85299500 AATTTAAATT
1 AA-TTAAATT
85299510 AA
1 AA
85299512 AATAATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (9 bp):
AATTAAATT
Found at i:85299675 original size:19 final size:19
Alignment explanation
Indices: 85299651--85299691 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
85299641 TCGAACTGTC
* *
85299651 AAATCGGGCCTAGTTTGTG
1 AAATCGGACCTAGTATGTG
*
85299670 AAATCGGACCTGGTATGTG
1 AAATCGGACCTAGTATGTG
85299689 AAA
1 AAA
85299692 CTGGGTCGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (19 bp):
AAATCGGACCTAGTATGTG
Found at i:85300006 original size:62 final size:59
Alignment explanation
Indices: 85299927--85300060 Score: 189
Period size: 62 Copynumber: 2.2 Consensus size: 59
85299917 TCCAAAAATG
* * *
85299927 ATATTATTTTAGT-AGATTTAATATTAAATTTAATTTAATATTTATCTTGTAGATAAATATT
1 ATATTAATTTAATAAGATTTAATATTAAATTTAATCTAATATTTATC-T-T-GATAAATATT
* *
85299988 CTATTAGTTTAATAAGATTTAATATTAAATTTAATCTAATATTTATCTTGATAAATATT
1 ATATTAATTTAATAAGATTTAATATTAAATTTAATCTAATATTTATCTTGATAAATATT
85300047 ATATTAATTTAATA
1 ATATTAATTTAATA
85300061 TTGAAATAAT
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
59 22 0.33
60 1 0.02
61 11 0.17
62 32 0.48
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (59 bp):
ATATTAATTTAATAAGATTTAATATTAAATTTAATCTAATATTTATCTTGATAAATATT
Found at i:85303918 original size:44 final size:42
Alignment explanation
Indices: 85303803--85303968 Score: 161
Period size: 43 Copynumber: 3.9 Consensus size: 42
85303793 TTCCGATATA
* * * *
85303803 TGATTTCGTGTAAGACCATGTCTGGGACGTTGACATCAATTTG
1 TGATTTCGTGTAAGACCACGTCTAGGACATTGGCATC-ATTTG
* * *
85303846 TGATTTCGTGTAAGACCTCGTTTGGGACATTGGCATCGATTTG
1 TGATTTCGTGTAAGACCACGTCTAGGACATTGGCATC-ATTTG
** * * *
85303889 TGATTTACGTGTAAGACCTTGTCTAGGACAGTGGCATCAATAG
1 TGATTT-CGTGTAAGACCACGTCTAGGACATTGGCATCATTTG
* * *
85303932 TTGATTACATGTAAGACCACGTCTAAGACATTGGCAT
1 -TGATTTCGTGTAAGACCACGTCTAGGACATTGGCAT
85303969 TGTACGAGCT
Statistics
Matches: 103, Mismatches: 18, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
43 71 0.69
44 32 0.31
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCACGTCTAGGACATTGGCATCATTTG
Found at i:85303937 original size:87 final size:86
Alignment explanation
Indices: 85303803--85303968 Score: 201
Period size: 87 Copynumber: 1.9 Consensus size: 86
85303793 TTCCGATATA
* * * * * *
85303803 TGATTTCGTGTAAGACCATGTCTGGGACGTTGACATCAATTTGTGATTTCGTGTAAGACCTCGTT
1 TGATTTCGTGTAAGACCATGTCTAGGACGTTGACATCAATGTGTGATTACATGTAAGACCACGTC
**
85303868 TGGGACATTGGCATCGATTTG
66 TAAGACATTGGCATCGATTTG
* *
85303889 TGATTTACGTGTAAGACCTTGTCTAGGACAG-TGGCATCAATAGT-TGATTACATGTAAGACCAC
1 TGATTT-CGTGTAAGACCATGTCTAGGAC-GTTGACATCAAT-GTGTGATTACATGTAAGACCAC
85303952 GTCTAAGACATTGGCAT
63 GTCTAAGACATTGGCAT
85303969 TGTACGAGCT
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
86 6 0.09
87 59 0.88
88 2 0.03
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (86 bp):
TGATTTCGTGTAAGACCATGTCTAGGACGTTGACATCAATGTGTGATTACATGTAAGACCACGTC
TAAGACATTGGCATCGATTTG
Found at i:85308607 original size:10 final size:10
Alignment explanation
Indices: 85308592--85308618 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
85308582 TACTCCTTCA
85308592 AGCTCAAATC
1 AGCTCAAATC
85308602 AGCTCAAATC
1 AGCTCAAATC
85308612 AGCTCAA
1 AGCTCAA
85308619 CTTAACTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.30, G:0.11, T:0.19
Consensus pattern (10 bp):
AGCTCAAATC
Found at i:85311429 original size:20 final size:21
Alignment explanation
Indices: 85311404--85311443 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
85311394 ATGAGCTTTT
*
85311404 TCTT-AAATGATAAAAAAAAA
1 TCTTAAAATAATAAAAAAAAA
85311424 TCTTAAAATAATAAAAAAAA
1 TCTTAAAATAATAAAAAAAA
85311444 GAAGCGCCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.68, C:0.05, G:0.03, T:0.25
Consensus pattern (21 bp):
TCTTAAAATAATAAAAAAAAA
Found at i:85312377 original size:7 final size:8
Alignment explanation
Indices: 85312346--85312375 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
85312336 AAAATAAAAC
85312346 TAAAAATTT
1 TAAAAA-TT
85312355 TAAAAATT
1 TAAAAATT
85312363 TAAAAATT
1 TAAAAATT
85312371 TAAAA
1 TAAAA
85312376 TTAATAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 15 0.71
9 6 0.29
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
TAAAAATT
Found at i:85312978 original size:19 final size:20
Alignment explanation
Indices: 85312932--85312979 Score: 55
Period size: 19 Copynumber: 2.4 Consensus size: 20
85312922 CGTATTTAAT
85312932 TTTTTTAATTATTTTAAGAG
1 TTTTTTAATTATTTTAAGAG
*
85312952 TTTCTTTAA-TA-TTTAAGTGG
1 TTT-TTTAATTATTTTAAG-AG
85312972 TTTTTTAA
1 TTTTTTAA
85312980 AAATATATTC
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 11 0.44
20 9 0.36
21 5 0.20
ACGTcount: A:0.27, C:0.02, G:0.10, T:0.60
Consensus pattern (20 bp):
TTTTTTAATTATTTTAAGAG
Found at i:85315944 original size:6 final size:6
Alignment explanation
Indices: 85315933--85315957 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
85315923 CACCCAAGCC
85315933 ATCCAA ATCCAA ATCCAA ATCCAA A
1 ATCCAA ATCCAA ATCCAA ATCCAA A
85315958 CACAAGATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.32, G:0.00, T:0.16
Consensus pattern (6 bp):
ATCCAA
Found at i:85318613 original size:5 final size:5
Alignment explanation
Indices: 85318593--85318625 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
85318583 TGAAGGAATT
85318593 AAAAG ACAAA- AAAAG AAAAG AAAAG AAAAG AAA
1 AAAAG A-AAAG AAAAG AAAAG AAAAG AAAAG AAA
85318626 CAGGTTTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 3 0.12
5 20 0.77
6 3 0.12
ACGTcount: A:0.82, C:0.03, G:0.15, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:85318668 original size:7 final size:7
Alignment explanation
Indices: 85318656--85318683 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
85318646 AATGAGACCG
85318656 GTTCCAA
1 GTTCCAA
85318663 GTTCCAA
1 GTTCCAA
85318670 GTTCCAA
1 GTTCCAA
85318677 GTTCCAA
1 GTTCCAA
85318684 TTTCTAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (7 bp):
GTTCCAA
Found at i:85319732 original size:20 final size:20
Alignment explanation
Indices: 85319678--85319732 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 20
85319668 TCAAATATAC
*
85319678 TATATTAAAAAATAATTTAAAA
1 TATATT-AAAAAT-ATTCAAAA
*
85319700 TTTA-TAAAAATATTCAAAA
1 TATATTAAAAATATTCAAAA
85319719 TATATTAAAAATAT
1 TATATTAAAAATAT
85319733 ATAGAAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 10 0.34
20 15 0.52
21 1 0.03
22 3 0.10
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (20 bp):
TATATTAAAAATATTCAAAA
Found at i:85319740 original size:11 final size:11
Alignment explanation
Indices: 85319678--85319734 Score: 50
Period size: 11 Copynumber: 5.5 Consensus size: 11
85319668 TCAAATATAC
85319678 TATATTAAAAA
1 TATATTAAAAA
*
85319689 -ATAATTTAAAA
1 TAT-ATTAAAAA
*
85319700 TTTA-T-AAAA
1 TATATTAAAAA
*
85319709 -ATATTCAAAA
1 TATATTAAAAA
85319719 TATATTAAAAA
1 TATATTAAAAA
85319730 TATAT
1 TATAT
85319735 AGAAAAAACT
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
8 2 0.05
9 5 0.14
10 7 0.19
11 22 0.59
12 1 0.03
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (11 bp):
TATATTAAAAA
Found at i:85322760 original size:4 final size:4
Alignment explanation
Indices: 85322751--85322788 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
85322741 TTAAATATGT
*
85322751 TTTA TTTA TTTA TTTA TTTA CTTA TTTA TATT- TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TT
85322789 GAAAAATATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
3 2 0.07
4 26 0.87
5 2 0.07
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:85323094 original size:21 final size:21
Alignment explanation
Indices: 85323053--85323107 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
85323043 TATTGAATTG
85323053 TTTTGAATTTA-ATA-A-AAT
1 TTTTGAATTTATATATATAAT
85323071 TTTAT-AATTTATATATATAAT
1 TTT-TGAATTTATATATATAAT
*
85323092 TTTTGAATTTTTATAT
1 TTTTGAATTTATATAT
85323108 TAGTAGATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
18 9 0.29
19 4 0.13
20 2 0.06
21 16 0.52
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (21 bp):
TTTTGAATTTATATATATAAT
Found at i:85324040 original size:34 final size:34
Alignment explanation
Indices: 85323997--85324067 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
85323987 TTGAAACTAT
85323997 TTAAGTTTATGAATCCCATATGTCGGCCTAATAG
1 TTAAGTTTATGAATCCCATATGTCGGCCTAATAG
85324031 TTAAGTTTATGAATCCCATATGTCGGCCTAATAG
1 TTAAGTTTATGAATCCCATATGTCGGCCTAATAG
85324065 TTA
1 TTA
85324068 GGGTGTTCAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.37
Consensus pattern (34 bp):
TTAAGTTTATGAATCCCATATGTCGGCCTAATAG
Found at i:85327460 original size:14 final size:14
Alignment explanation
Indices: 85327441--85327471 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
85327431 TCAAGTTGAG
*
85327441 TTGAATTTTAAAAT
1 TTGAATATTAAAAT
85327455 TTGAATATTAAAAT
1 TTGAATATTAAAAT
85327469 TTG
1 TTG
85327472 GATAACTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.48
Consensus pattern (14 bp):
TTGAATATTAAAAT
Found at i:85328547 original size:16 final size:18
Alignment explanation
Indices: 85328521--85328554 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
85328511 TAGAATTAGG
85328521 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
85328538 TTGA-AAAATTAATTTAA
1 TTGAGAAAATTAATTTAA
85328555 CAAATAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:85329190 original size:15 final size:14
Alignment explanation
Indices: 85329170--85329217 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 14
85329160 AGTATACTTG
85329170 TTATTTTAAATAATA
1 TTATTTTAAATAA-A
*
85329185 TTATTTTAAATTAA
1 TTATTTTAAATAAA
* *
85329199 TTACTTAAAATAAAA
1 TTATTTTAAAT-AAA
85329214 TTAT
1 TTAT
85329218 ATTATCAATA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
14 10 0.37
15 17 0.63
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (14 bp):
TTATTTTAAATAAA
Found at i:85329782 original size:9 final size:9
Alignment explanation
Indices: 85329757--85329796 Score: 55
Period size: 9 Copynumber: 4.3 Consensus size: 9
85329747 TCAAAGTCTT
85329757 TAATATTTTA
1 TAAT-TTTTA
85329767 T-ATTTTTA
1 TAATTTTTA
85329775 TAATTTTTAA
1 TAATTTTT-A
85329785 TAATTTTTA
1 TAATTTTTA
85329794 TAA
1 TAA
85329797 GTTTATATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
8 6 0.21
9 12 0.43
10 10 0.36
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (9 bp):
TAATTTTTA
Found at i:85339977 original size:37 final size:37
Alignment explanation
Indices: 85339936--85340017 Score: 128
Period size: 37 Copynumber: 2.2 Consensus size: 37
85339926 AAATATTTAT
* * *
85339936 TAATCAATGTTCAAACTTTGAACATGCTTTATTAAAC
1 TAATCAATGCTAAAACTTTGAACATGCTTTAATAAAC
*
85339973 TAATCAATGCTAAAACTTTGAACATGCTTTAATGAAC
1 TAATCAATGCTAAAACTTTGAACATGCTTTAATAAAC
85340010 TAATCAAT
1 TAATCAAT
85340018 ACTTAACAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (37 bp):
TAATCAATGCTAAAACTTTGAACATGCTTTAATAAAC
Found at i:85340972 original size:39 final size:39
Alignment explanation
Indices: 85340918--85340993 Score: 152
Period size: 39 Copynumber: 1.9 Consensus size: 39
85340908 TCTAACCAAG
85340918 TTATATCATGTGATATAGAATTGCTTAGGTGCTCTTGTT
1 TTATATCATGTGATATAGAATTGCTTAGGTGCTCTTGTT
85340957 TTATATCATGTGATATAGAATTGCTTAGGTGCTCTTG
1 TTATATCATGTGATATAGAATTGCTTAGGTGCTCTTG
85340994 ATGGAACCCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.24, C:0.11, G:0.21, T:0.45
Consensus pattern (39 bp):
TTATATCATGTGATATAGAATTGCTTAGGTGCTCTTGTT
Found at i:85343318 original size:121 final size:121
Alignment explanation
Indices: 85343182--85344414 Score: 2385
Period size: 121 Copynumber: 10.2 Consensus size: 121
85343172 TTTTCAAGTT
*
85343182 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
***
85343247 TAATATAAGAATATTATATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
*
85343303 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
85343368 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
85343424 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
85343489 TAATATAAGAATATTATCTAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
*
85343545 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
85343610 TAATATAAGAATATTATCCTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
85343666 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
85343731 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
85343787 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
85343852 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
85343908 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
85343973 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
85344029 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
85344094 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
85344150 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
85344215 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
85344271 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
85344336 TAATATAAGAATATTATCCAATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
85344392 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
85344415 TAAATATGAT
Statistics
Matches: 1101, Mismatches: 11, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
121 1101 1.00
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (121 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
Found at i:85343449 original size:30 final size:30
Alignment explanation
Indices: 85343415--85343571 Score: 78
Period size: 30 Copynumber: 5.2 Consensus size: 30
85343405 ATTATATATT
85343415 TTAATTAAAATATATTTAATAATAATTATG
1 TTAATTAAAATATATTTAATAATAATTATG
*
85343445 TTAATT--TATAT-TTTACAGTATCATATATTATG
1 TTAATTAAAATATATTTA-A-TA--ATA-ATTATG
* * * * *
85343477 ATTTCAGTAAATTA-ATATAAGAAT-ATTAT-
1 --TTAATTAAAATATATTTAATAATAATTATG
* * * * *
85343506 CTAATTAAGAATTTCATTAAATTAT-A-TATT
1 TTAATTAA-AATAT-ATTTAATAATAATTATG
85343536 TTAATTAAAATATATTTAATAATAATTATG
1 TTAATTAAAATATATTTAATAATAATTATG
85343566 TTAATT
1 TTAATT
85343572 TATATTTTAC
Statistics
Matches: 90, Mismatches: 21, Indels: 32
0.63 0.15 0.22
Matches are distributed among these distances:
27 9 0.10
28 15 0.17
29 10 0.11
30 34 0.38
31 3 0.03
32 8 0.09
34 5 0.06
35 1 0.01
36 5 0.06
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.48
Consensus pattern (30 bp):
TTAATTAAAATATATTTAATAATAATTATG
Found at i:85344391 original size:18 final size:17
Alignment explanation
Indices: 85344363--85344397 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
85344353 CCAATTAAGA
*
85344363 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
85344380 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
85344398 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:85344627 original size:44 final size:45
Alignment explanation
Indices: 85344562--85344652 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
85344552 ACCTCTATTC
* * *
85344562 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
85344606 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
85344651 CA
1 CA
85344653 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:85344654 original size:16 final size:16
Alignment explanation
Indices: 85344633--85344701 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
85344623 GATTAGCTAT
85344633 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
85344649 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
85344666 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
85344682 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
85344698 TACA
1 TACA
85344702 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:85344675 original size:33 final size:32
Alignment explanation
Indices: 85344633--85344701 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
85344623 GATTAGCTAT
85344633 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
*
85344666 TACACCTCTAATCCAATACGCCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
85344698 TACA
1 TACA
85344702 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:85346237 original size:23 final size:23
Alignment explanation
Indices: 85346205--85346249 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
85346195 TGAAAAATAA
* *
85346205 ATTTTTAATTTTTAATTGAAAAC
1 ATTTTCAATTTTAAATTGAAAAC
85346228 ATTTTCAATTTTAAATTGAAAA
1 ATTTTCAATTTTAAATTGAAAA
85346250 ATTAAAAGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.49
Consensus pattern (23 bp):
ATTTTCAATTTTAAATTGAAAAC
Found at i:85351034 original size:18 final size:18
Alignment explanation
Indices: 85350967--85351114 Score: 185
Period size: 18 Copynumber: 8.3 Consensus size: 18
85350957 ATAATCTTCA
85350967 ATGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGAT
* *
85350986 GTGATATGCCATCTTAGAT
1 ATGAT-TGCAATCTTAGAT
*
85351005 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
85351022 ATGATTTCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
* *
85351040 ATGA-TCCAATCTTAGGT
1 ATGATTGCAATCTTAGAT
85351057 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
* *
85351075 ATGA-TACAATCTTAGAC
1 ATGATTGCAATCTTAGAT
85351092 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
85351110 ATGAT
1 ATGAT
85351115 ATACAATCAT
Statistics
Matches: 112, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
17 45 0.40
18 47 0.42
19 20 0.18
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (18 bp):
ATGATTGCAATCTTAGAT
Found at i:85351041 original size:35 final size:35
Alignment explanation
Indices: 85350975--85351115 Score: 219
Period size: 35 Copynumber: 4.0 Consensus size: 35
85350965 CAATGATATG
* *
85350975 CAATCTTAGATGTGATATGCCATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
* *
85351011 CAATCTTAGATATGATTTCAATCTTAGATATGATC
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
*
85351046 CAATCTTAGGTATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
*
85351081 CAATCTTAGACATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
85351116 TACAATCATA
Statistics
Matches: 96, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
35 81 0.84
36 15 0.16
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:85352550 original size:43 final size:43
Alignment explanation
Indices: 85352481--85352625 Score: 134
Period size: 43 Copynumber: 3.4 Consensus size: 43
85352471 TCCTTGATAT
* *
85352481 GGTCTTACATGTTATC-ATTTATCGATGTCACTGTCTCACACAG
1 GGTCTTACATGTAATCGA-TTAACGATGTCACTGTCTCACACAG
* * *
85352524 GGTCTTACATGAAATCGATTAACGATGCTGA-TGTCTCACACAT
1 GGTCTTACATGTAATCGATTAACGATG-TCACTGTCTCACACAG
* * * * * *
85352567 GGTCTTACACGTAATTG-TAACACAATGCCACTGTCCCACACAG
1 GGTCTTACATGTAATCGATTA-ACGATGTCACTGTCTCACACAG
*
85352610 GGTTTTACATGTAATC
1 GGTCTTACATGTAATC
85352626 ACATTTCAAT
Statistics
Matches: 81, Mismatches: 17, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
42 3 0.04
43 75 0.93
44 3 0.04
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (43 bp):
GGTCTTACATGTAATCGATTAACGATGTCACTGTCTCACACAG
Found at i:85353903 original size:2 final size:2
Alignment explanation
Indices: 85353896--85353920 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
85353886 AGCAACAAAA
85353896 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
85353921 AAAATATGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:85356948 original size:23 final size:23
Alignment explanation
Indices: 85356922--85356966 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
85356912 GTTTTTCCTT
*
85356922 TTGTAGGAGTGTTTTTTTCTCAA
1 TTGTAGAAGTGTTTTTTTCTCAA
85356945 TTGTAGAAGTGTTTTTTTCTCA
1 TTGTAGAAGTGTTTTTTTCTCA
85356967 GTTGATTGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.18, C:0.09, G:0.20, T:0.53
Consensus pattern (23 bp):
TTGTAGAAGTGTTTTTTTCTCAA
Found at i:85361415 original size:10 final size:10
Alignment explanation
Indices: 85361393--85361444 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
85361383 AATTCTATCG
*
85361393 AAAA-TAATC
1 AAAATTAATT
85361402 AAAATTAATT
1 AAAATTAATT
*
85361412 AAAATTTATTAT
1 AAAA-TTAAT-T
85361424 AAAATTAATT
1 AAAATTAATT
*
85361434 AAAATTCATT
1 AAAATTAATT
85361444 A
1 A
85361445 TGTTAATAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
9 4 0.11
10 19 0.53
11 8 0.22
12 5 0.14
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (10 bp):
AAAATTAATT
Found at i:85361455 original size:22 final size:22
Alignment explanation
Indices: 85361402--85361445 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
85361392 GAAAATAATC
*
85361402 AAAATTAATTAAAATTTATTAT
1 AAAATTAATTAAAATTCATTAT
85361424 AAAATTAATTAAAATTCATTAT
1 AAAATTAATTAAAATTCATTAT
85361446 GTTAATAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
AAAATTAATTAAAATTCATTAT
Found at i:85374464 original size:22 final size:23
Alignment explanation
Indices: 85374426--85374475 Score: 75
Period size: 22 Copynumber: 2.2 Consensus size: 23
85374416 TCTGTCAAAA
* *
85374426 ATTATCAAAGTTAATTAAAATTT
1 ATTATCAAAATTAATTAAAATTC
85374449 ATTAT-AAAATTAATTAAAATTC
1 ATTATCAAAATTAATTAAAATTC
85374471 ATTAT
1 ATTAT
85374476 GTTAATAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 20 0.80
23 5 0.20
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (23 bp):
ATTATCAAAATTAATTAAAATTC
Found at i:85376365 original size:20 final size:18
Alignment explanation
Indices: 85376342--85376380 Score: 60
Period size: 20 Copynumber: 2.1 Consensus size: 18
85376332 ATAATAATTA
85376342 TATTTTATTAAATTATGTAT
1 TATTTTATT-AATT-TGTAT
85376362 TATTTTATTAATTTGTAT
1 TATTTTATTAATTTGTAT
85376380 T
1 T
85376381 TAATAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.32
19 4 0.21
20 9 0.47
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (18 bp):
TATTTTATTAATTTGTAT
Found at i:85376380 original size:15 final size:15
Alignment explanation
Indices: 85376312--85376381 Score: 50
Period size: 15 Copynumber: 4.2 Consensus size: 15
85376302 ATATTATAAT
*
85376312 TTTTATTAATTCATA
1 TTTTATTAATTTATA
*
85376327 TTTTAATAATAATTATA
1 TTTTATTAAT--TTATA
85376344 TTTTATTAAATTATGTATTA
1 TTTTATT-AA-T-T-TA-TA
*
85376364 TTTTATTAATTTGTA
1 TTTTATTAATTTATA
85376379 TTT
1 TTT
85376382 AATAAAAATC
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
15 14 0.31
16 1 0.02
17 11 0.24
18 5 0.11
19 5 0.11
20 9 0.20
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.61
Consensus pattern (15 bp):
TTTTATTAATTTATA
Found at i:85376627 original size:16 final size:16
Alignment explanation
Indices: 85376606--85376640 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
85376596 TGAATTACTG
*
85376606 ATTACAACTTTATTTC
1 ATTACAACTCTATTTC
85376622 ATTACAACTCTATTTC
1 ATTACAACTCTATTTC
85376638 ATT
1 ATT
85376641 CCCCTAACCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.20, G:0.00, T:0.49
Consensus pattern (16 bp):
ATTACAACTCTATTTC
Found at i:85377812 original size:15 final size:16
Alignment explanation
Indices: 85377769--85377816 Score: 62
Period size: 15 Copynumber: 3.0 Consensus size: 16
85377759 CTCCATATTT
*
85377769 GATTTTTTTAAAATTA
1 GATTTTTTTAAAAATA
*
85377785 GTTTTTATTTAAAAATA
1 GATTTT-TTTAAAAATA
85377802 -ATTTTTTTAAAAATA
1 GATTTTTTTAAAAATA
85377817 TAATACACTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 10 0.36
16 9 0.32
17 9 0.32
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (16 bp):
GATTTTTTTAAAAATA
Found at i:85377819 original size:17 final size:16
Alignment explanation
Indices: 85377770--85377820 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 16
85377760 TCCATATTTG
85377770 ATTTTTTTAAAAT-TA
1 ATTTTTTTAAAATATA
*
85377785 GTTTTTATTTAAAA-ATA
1 -ATTTT-TTTAAAATATA
85377802 ATTTTTTTAAAAATATA
1 ATTTTTTT-AAAATATA
85377819 AT
1 AT
85377821 ACACTAAATG
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
15 3 0.10
16 12 0.41
17 14 0.48
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (16 bp):
ATTTTTTTAAAATATA
Found at i:85378054 original size:18 final size:18
Alignment explanation
Indices: 85378008--85378056 Score: 53
Period size: 20 Copynumber: 2.6 Consensus size: 18
85377998 TTAATGATTT
*
85378008 AATATAAATATATATAATT
1 AATAT-AATATATATAATC
*
85378027 ATTATTTAATATATATAATC
1 A--ATATAATATATATAATC
85378047 AATATAATAT
1 AATATAATAT
85378057 TTTTTTATAG
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
18 8 0.32
19 1 0.04
20 13 0.52
21 3 0.12
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (18 bp):
AATATAATATATATAATC
Found at i:85379118 original size:16 final size:18
Alignment explanation
Indices: 85379097--85379129 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
85379087 AAATATCTTT
85379097 ATTTTTA-GTA-AATATA
1 ATTTTTATGTATAATATA
85379113 ATTTTTATGTATAATAT
1 ATTTTTATGTATAATAT
85379130 TTATTTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (18 bp):
ATTTTTATGTATAATATA
Found at i:85379288 original size:67 final size:68
Alignment explanation
Indices: 85379180--85379314 Score: 254
Period size: 67 Copynumber: 2.0 Consensus size: 68
85379170 ATAGGTGGAG
85379180 AAAGTAAATATTTTTAACTAATGTTTATAATTAATAAATATATTATTTT-AATTTTTTATTTTTA
1 AAAGTAAATATTTTTAACTAATGTTTATAATTAATAAATATATTATTTTCAATTTTTTATTTTTA
85379244 ATT
66 ATT
*
85379247 AAAGTAAATATTTTTAATTAATGTTTATAATTAATAAATATATTATTTTCAATTTTTTATTTTTA
1 AAAGTAAATATTTTTAACTAATGTTTATAATTAATAAATATATTATTTTCAATTTTTTATTTTTA
85379312 ATT
66 ATT
85379315 CATCTTTTTA
Statistics
Matches: 66, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
67 48 0.73
68 18 0.27
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (68 bp):
AAAGTAAATATTTTTAACTAATGTTTATAATTAATAAATATATTATTTTCAATTTTTTATTTTTA
ATT
Found at i:85379290 original size:32 final size:32
Alignment explanation
Indices: 85379187--85379290 Score: 106
Period size: 32 Copynumber: 3.2 Consensus size: 32
85379177 GAGAAAGTAA
*
85379187 ATATTTTTAACTAATGTTTATAATTAATAAAT
1 ATATTTTTAATTAATGTTTATAATTAATAAAT
**
85379219 ATATTATTTTAATT--T-TTTATTTTTAATTAAAGT
1 ATA-T-TTTTAATTAATGTTTATAATTAA-TAAA-T
85379252 AAATATTTTTAATTAATGTTTATAATTAATAAAT
1 --ATATTTTTAATTAATGTTTATAATTAATAAAT
85379286 ATATT
1 ATATT
85379291 ATTTTCAATT
Statistics
Matches: 58, Mismatches: 5, Indels: 18
0.72 0.06 0.22
Matches are distributed among these distances:
31 9 0.16
32 13 0.22
33 10 0.17
34 9 0.16
35 8 0.14
36 9 0.16
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (32 bp):
ATATTTTTAATTAATGTTTATAATTAATAAAT
Found at i:85379313 original size:32 final size:31
Alignment explanation
Indices: 85379210--85379313 Score: 111
Period size: 32 Copynumber: 3.2 Consensus size: 31
85379200 ATGTTTATAA
85379210 TTAATAAATATATTATTTTAATTTTTTATTT
1 TTAATAAATATATTATTTTAATTTTTTATTT
* **
85379241 TTAATTAAAGTA-AATATTTTTAATTAATGTTTATAA
1 TTAA-TAAA-TATATTA-TTTTAATT--T-TTTATTT
85379277 TTAATAAATATATTATTTTCAATTTTTTATTT
1 TTAATAAATATATTATTTT-AATTTTTTATTT
85379309 TTAAT
1 TTAAT
85379314 TCATCTTTTT
Statistics
Matches: 59, Mismatches: 6, Indels: 15
0.74 0.08 0.19
Matches are distributed among these distances:
31 4 0.07
32 17 0.29
33 11 0.19
34 6 0.10
35 12 0.20
36 9 0.15
ACGTcount: A:0.38, C:0.01, G:0.02, T:0.59
Consensus pattern (31 bp):
TTAATAAATATATTATTTTAATTTTTTATTT
Found at i:85379383 original size:32 final size:35
Alignment explanation
Indices: 85379347--85379410 Score: 80
Period size: 32 Copynumber: 1.9 Consensus size: 35
85379337 TTTATTTATA
85379347 AAATAAAATAATTAT-TGT-A-ATTTATTTTTAGT
1 AAATAAAATAATTATGTGTAATATTTATTTTTAGT
* **
85379379 AAATATAATTTTTATGTGTAATATTTATTTTT
1 AAATAAAATAATTATGTGTAATATTTATTTTT
85379411 CAATCCATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
32 12 0.46
33 3 0.12
34 1 0.04
35 10 0.38
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (35 bp):
AAATAAAATAATTATGTGTAATATTTATTTTTAGT
Done.