Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 266 of 290
Found at i:85639845 original size:14 final size:14
Alignment explanation
Indices: 85639826--85639858 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
85639816 TTTATCATAC
85639826 TTATTATATTTTAT
1 TTATTATATTTTAT
85639840 TTATTATATTTTAT
1 TTATTATATTTTAT
85639854 TTATT
1 TTATT
85639859 TTTTCCTACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (14 bp):
TTATTATATTTTAT
Found at i:85656238 original size:47 final size:47
Alignment explanation
Indices: 85656173--85656749 Score: 931
Period size: 47 Copynumber: 12.3 Consensus size: 47
85656163 ACAAGATATG
*
85656173 TATATGTGATAAGGCCTAATGGCCAATGGGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
85656220 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
85656267 TATATATGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
85656314 TATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
85656361 TATATGTGATATGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
85656408 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
85656455 TATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
85656502 TATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
85656549 TATATTTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
85656596 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * *
85656643 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
85656690 TATATGTGATAAGG-CTGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCT-AATGGCCAATGTGATGAATGTGAAAGTGTA
*
85656737 TAAATGTGATAAG
1 TATATGTGATAAG
85656750 TCCCGAAGGG
Statistics
Matches: 490, Mismatches: 39, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
46 2 0.00
47 488 1.00
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:85660177 original size:40 final size:40
Alignment explanation
Indices: 85660140--85660364 Score: 235
Period size: 40 Copynumber: 5.6 Consensus size: 40
85660130 GCTACTCGTT
* *
85660140 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCA
85660180 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-TTATAGTAACTCGCA
* *
85660220 CAAATGCCTTCGGGACTTAACCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGTTA-TAGTAACTCGCA
** *
85660260 CAAATGCCTTCGGGACTTAACCC-GAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGTTA-TAGTAACTCGCA
*** * * * *
85660300 CAAATGCCTTC-GGATCTTAGTTCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGTTATAGTAAC-TCGCA
*
85660341 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGG
85660365 ACATCATTCG
Statistics
Matches: 163, Mismatches: 14, Indels: 16
0.84 0.07 0.08
Matches are distributed among these distances:
39 4 0.02
40 143 0.88
41 16 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCA
Found at i:85660244 original size:80 final size:79
Alignment explanation
Indices: 85660140--85660365 Score: 276
Period size: 80 Copynumber: 2.8 Consensus size: 79
85660130 GCTACTCGTT
*
85660140 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
85660205 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
* * * *
85660220 CAAATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGA
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
85660285 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
** * * * *
85660300 CAAATGCCTTC-GGATCTTAGTTCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCC
85660363 GGA
63 GGA
85660366 CATCATTCGA
Statistics
Matches: 125, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
79 4 0.03
80 112 0.90
81 9 0.07
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
ATTAGTAACTCGCA
Found at i:85660349 original size:120 final size:120
Alignment explanation
Indices: 85660140--85660365 Score: 287
Period size: 120 Copynumber: 1.9 Consensus size: 120
85660130 GCTACTCGTT
* **
85660140 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
85660205 ATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCA
66 ATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCA
* * ***
85660260 CAAATGCCTTCGGGACTTAACCCGAA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTTC
1 CAAATGCCTTCGGGACATAACCCGAATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
85660323 GGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
85660366 CATCATTCGA
Statistics
Matches: 90, Mismatches: 13, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
119 4 0.04
120 78 0.87
121 8 0.09
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAACCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCA
Found at i:85663157 original size:38 final size:38
Alignment explanation
Indices: 85663106--85663188 Score: 121
Period size: 38 Copynumber: 2.2 Consensus size: 38
85663096 TATTATGGAG
* *
85663106 TGTAGTGATGGGTGGGATGATGTTATCCTCACATGCAA
1 TGTAGGGATGGGTGGGATGAGGTTATCCTCACATGCAA
* * *
85663144 TGTAGGGATGGGTGGGTTGAGGTTATCCTCACATGGAG
1 TGTAGGGATGGGTGGGATGAGGTTATCCTCACATGCAA
85663182 TGTAGGG
1 TGTAGGG
85663189 CTGGACGGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.20, C:0.11, G:0.39, T:0.30
Consensus pattern (38 bp):
TGTAGGGATGGGTGGGATGAGGTTATCCTCACATGCAA
Found at i:85673281 original size:46 final size:46
Alignment explanation
Indices: 85673228--85673403 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
85673218 TGGTTGAGCA
85673228 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
85673274 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
85673319 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
85673367 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
85673404 GCAGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.58
47 26 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:85673384 original size:93 final size:93
Alignment explanation
Indices: 85673225--85673396 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
85673215 GGATGGTTGA
* * *
85673225 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
85673290 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
85673318 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
85673383 TGAGTTCGAGTTCG
66 TGAGTCCGAGTTCG
85673397 CTTATGGGCA
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:85674866 original size:28 final size:28
Alignment explanation
Indices: 85674824--85674898 Score: 107
Period size: 28 Copynumber: 2.7 Consensus size: 28
85674814 ATCTTTGATG
85674824 TCTCGCACACTAAGTGCCATACTCAATA
1 TCTCGCACACTAAGTGCCATACTCAATA
*
85674852 TCTCGCACA-TCAAGTGCCATTCTCAATA
1 TCTCGCACACT-AAGTGCCATACTCAATA
* *
85674880 TTTCACACACTAAGTGCCA
1 TCTCGCACACTAAGTGCCA
85674899 CAGATATATA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
27 1 0.02
28 40 0.95
29 1 0.02
ACGTcount: A:0.31, C:0.32, G:0.11, T:0.27
Consensus pattern (28 bp):
TCTCGCACACTAAGTGCCATACTCAATA
Found at i:85674969 original size:40 final size:40
Alignment explanation
Indices: 85674911--85674997 Score: 122
Period size: 40 Copynumber: 2.2 Consensus size: 40
85674901 GATATATATA
*
85674911 TAGCCGAAGCTATCTCAAATCGCACACCAAGTGCCACAT-T
1 TAGCCGAAGCTATCTCAAACCGCACACCAAGTGCCAC-TCT
* * *
85674951 TAGCCGAAGCTATTTCAAACCGCACACTAAGTGTCACTCT
1 TAGCCGAAGCTATCTCAAACCGCACACCAAGTGCCACTCT
85674991 TAGCCGA
1 TAGCCGA
85674998 TATGTCGTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
39 1 0.02
40 41 0.98
ACGTcount: A:0.31, C:0.31, G:0.16, T:0.22
Consensus pattern (40 bp):
TAGCCGAAGCTATCTCAAACCGCACACCAAGTGCCACTCT
Found at i:85678042 original size:12 final size:12
Alignment explanation
Indices: 85678001--85678079 Score: 54
Period size: 12 Copynumber: 6.3 Consensus size: 12
85677991 TAAATATTAG
85678001 TTAT-ATATATT
1 TTATCATATATT
*
85678012 ATTATCCATTATTTT
1 -TTAT-CA-TATATT
85678027 TTATCATATATT
1 TTATCATATATT
*
85678039 TTATCTATAAATT
1 TTATC-ATATATT
* *
85678052 ATATTATATATT
1 TTATCATATATT
*
85678064 ATT-TTATATATT
1 -TTATCATATATT
85678076 TTAT
1 TTAT
85678080 TTATATATAT
Statistics
Matches: 54, Mismatches: 7, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
11 2 0.04
12 30 0.56
13 12 0.22
14 5 0.09
15 5 0.09
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (12 bp):
TTATCATATATT
Found at i:85678088 original size:15 final size:15
Alignment explanation
Indices: 85678050--85678092 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
85678040 TATCTATAAA
*
85678050 TTATATTATATATTAT
1 TTATA-TATATTTTAT
85678066 TT-TATATATTTTAT
1 TTATATATATTTTAT
85678080 TTATATATATTTT
1 TTATATATATTTT
85678093 TTAAAAATTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 11 0.44
15 12 0.48
16 2 0.08
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TTATATATATTTTAT
Found at i:85678095 original size:13 final size:13
Alignment explanation
Indices: 85677983--85678095 Score: 67
Period size: 13 Copynumber: 8.8 Consensus size: 13
85677973 AATACTTTAA
85677983 ATATTTTTTA-A-
1 ATATTTTTTATAT
**
85677994 ATATTAGTTATAT
1 ATATTTTTTATAT
*
85678007 ATA-TTATTATCCAT
1 ATATTTTTTAT--AT
85678021 -TATTTTTTATCAT
1 ATATTTTTTAT-AT
* *
85678034 ATATTTTATCTAT
1 ATATTTTTTATAT
* *
85678047 AAATTATATTATAT
1 ATATT-TTTTATAT
*
85678061 AT-TATTTTATAT
1 ATATTTTTTATAT
85678073 AT-TTTATTTATAT
1 ATATTT-TTTATAT
85678086 ATATTTTTTA
1 ATATTTTTTA
85678096 AAAATTGTAT
Statistics
Matches: 78, Mismatches: 15, Indels: 16
0.72 0.14 0.15
Matches are distributed among these distances:
11 8 0.10
12 17 0.22
13 28 0.36
14 25 0.32
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.61
Consensus pattern (13 bp):
ATATTTTTTATAT
Found at i:85690450 original size:208 final size:208
Alignment explanation
Indices: 85690092--85691267 Score: 1842
Period size: 208 Copynumber: 5.7 Consensus size: 208
85690082 GCAGATATGG
*
85690092 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
*
85690157 AATTTGGCTTTCACATGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
66 AATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* *
85690222 AGAACAAATCGAAGTTTGGCGTCTCCATATTCAATGGAGGGTAGACACATAGCAGATCTGGCCTT
131 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGTAGACACATAGCAGATCTGGCCTT
85690287 CAGATGTTTTATA
196 CAGATGTTTTATA
*
85690300 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
85690365 AATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
66 AATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
85690430 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGTAGACACATAGCAGATCTGGCCTT
131 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGTAGACACATAGCAGATCTGGCCTT
85690495 CAGATGTTTTATA
196 CAGATGTTTTATA
*
85690508 CTAAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
**
85690573 GGTTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
66 AATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
*
85690638 AGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGTAGACACATAGCAGATCTGGCCTT
131 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGTAGACACATAGCAGATCTGGCCTT
85690703 CAGATGTTTTATA
196 CAGATGTTTTATA
*
85690716 CTGAAGTAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
* *
85690781 AGTTTGGCTTTCACGTGCTTACAATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
66 AATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * * *
85690846 AGAACAAATCAAAGTTTGGCATCTCTATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCTT
131 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGTAGACACATAGCAGATCTGGCCTT
*
85690911 CATATG-TTTATA
196 CAGATGTTTTATA
* *
85690923 TTGAAGC-AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAA-ATCATAGC
1 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGA-CATAGC
* * * * * *
85690986 TGATTTGGCTTTTACAG-GCTTATGTTGAAGCAAGTCTAAGATGATTTGGCGTCTCTGTATTGTC
65 TAATTTGGCTTTCAC-GTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTC
* * * * * **
85691050 AGGGAACAAATCGAAGTTTGACATCTCCATATTCGACGGAGGGCAGACACATAGCAAATCTAACC
129 AGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGTAGACACATAGCAGATCTGGCC
* *
85691115 TTCAGATG-ATTAGA
194 TTCAGATGTTTTATA
* * * * *
85691129 CTGAAGC-AGATCCAAGATGGTTTGGTATCTTTGTGATTACAAGGAGCAAATCGAAGACATAGCT
1 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
* ** * * * ** *
85691193 AATTTGGTTTTTGCGTGCTTACGCTAAAGTAGGTCTAAGATGATTTGGCATATCTGTATTGTCAG
66 AATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
*
85691258 GGAACAAATC
131 AGAACAAATC
85691268 AAAGAAGCAG
Statistics
Matches: 909, Mismatches: 55, Indels: 10
0.93 0.06 0.01
Matches are distributed among these distances:
205 2 0.00
206 294 0.32
207 13 0.01
208 600 0.66
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (208 bp):
CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
AATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGTAGACACATAGCAGATCTGGCCTT
CAGATGTTTTATA
Found at i:85691521 original size:13 final size:13
Alignment explanation
Indices: 85691503--85691533 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
85691493 GTATTTATTT
85691503 ATTTAAAATGTCC
1 ATTTAAAATGTCC
85691516 ATTTAAAATGTCC
1 ATTTAAAATGTCC
*
85691529 TTTTA
1 ATTTA
85691534 CAGAACCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.45
Consensus pattern (13 bp):
ATTTAAAATGTCC
Found at i:85693035 original size:30 final size:29
Alignment explanation
Indices: 85692980--85693044 Score: 69
Period size: 30 Copynumber: 2.2 Consensus size: 29
85692970 TAAATATTAG
**
85692980 TTATATATATTATTATTATCCATTATTTT
1 TTATATATATTATTATTATAAATTATTTT
*
85693009 TTATCATATATT-TTATCTATAAATTATATT
1 TTAT-ATATATTATTAT-TATAAATTATTTT
*
85693039 ATATAT
1 TTATAT
85693045 TTTTCTTTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.58
Consensus pattern (29 bp):
TTATATATATTATTATTATAAATTATTTT
Found at i:85695089 original size:52 final size:51
Alignment explanation
Indices: 85694978--85695098 Score: 154
Period size: 52 Copynumber: 2.4 Consensus size: 51
85694968 CAGTGGCCTG
* *
85694978 CATATAGTACCACCCTTGTAGTCAAAACTACCTTCTTCACAAAGTGCCGTT
1 CATATAGTACCACACTTGTAGCCAAAACTACCTTCTTCACAAAGTGCCGTT
* * * * *
85695029 CAAATAGTACCACACTTGT-GACCAAAACTATCTTTCTTCACAATGTGGCTTT
1 CATATAGTACCACACTTGTAG-CCAAAACTA-CCTTCTTCACAAAGTGCCGTT
85695081 CATATAGTACCACACTTG
1 CATATAGTACCACACTTG
85695099 AGTCACTAGT
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
50 1 0.02
51 25 0.42
52 34 0.57
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.31
Consensus pattern (51 bp):
CATATAGTACCACACTTGTAGCCAAAACTACCTTCTTCACAAAGTGCCGTT
Found at i:85703879 original size:64 final size:64
Alignment explanation
Indices: 85703689--85703936 Score: 302
Period size: 64 Copynumber: 3.8 Consensus size: 64
85703679 ATATAGTTTG
* * * * ** *
85703689 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGCCAGGT-TATCTCGTA
1 GCTCTCTTGT-CTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACATATATCCCGTA
* * * * * *
85703752 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACACATGCAACCTAGCTACATATATCCCG
1 GCTCTCTTGTCTACATGGTG---TACACATAGTACCACCCATGCGACCTAGCTACATATATCCCG
85703817 TA
63 TA
* *
85703819 GCTCCCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATATATCCCGTA
1 GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACATATATCCCGTA
*
85703883 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACAT
1 GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACAT
85703937 CATAATGTCT
Statistics
Matches: 160, Mismatches: 20, Indels: 9
0.85 0.11 0.05
Matches are distributed among these distances:
62 1 0.01
63 18 0.11
64 90 0.56
66 24 0.15
67 27 0.17
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACATATATCCCGTA
Found at i:85704708 original size:30 final size:30
Alignment explanation
Indices: 85704672--85704732 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
85704662 TCCTTAACTC
*
85704672 AAACTTTGGAAAATTTACATTTTTGCCCCT
1 AAACTTTGGAAAATTTACACTTTTGCCCCT
* * *
85704702 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAATTTACACTTTTGCCCCT
85704732 A
1 A
85704733 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (30 bp):
AAACTTTGGAAAATTTACACTTTTGCCCCT
Found at i:85706702 original size:24 final size:24
Alignment explanation
Indices: 85706669--85706742 Score: 121
Period size: 24 Copynumber: 3.1 Consensus size: 24
85706659 AAGTCTGTCT
*
85706669 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
85706693 GGAGAGGATTTAGGAGCTGATCAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
85706717 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
85706741 GG
1 GG
85706743 TGAACTGTGT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.31, C:0.05, G:0.42, T:0.22
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:85708221 original size:27 final size:26
Alignment explanation
Indices: 85708181--85708291 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
85708171 AGGAAGCGTC
*
85708181 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
85708208 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
85708235 CTGGTGGTTCTGCCACGATTAT-TGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * * *
85708262 TTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
85708288 CTGG
1 CTGG
85708292 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
26 13 0.19
27 55 0.79
28 2 0.03
ACGTcount: A:0.16, C:0.22, G:0.23, T:0.39
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:85708267 original size:54 final size:53
Alignment explanation
Indices: 85708181--85708291 Score: 143
Period size: 54 Copynumber: 2.1 Consensus size: 53
85708171 AGGAAGCGTC
*
85708181 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* * * * *
85708235 CTGGTGGTTCTGCCACGATTAT-TGTATTTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATTATCTGTT
85708288 CTGG
1 CTGG
85708292 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
53 14 0.28
54 36 0.72
ACGTcount: A:0.16, C:0.22, G:0.23, T:0.39
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:85714511 original size:23 final size:23
Alignment explanation
Indices: 85714479--85714541 Score: 101
Period size: 23 Copynumber: 2.7 Consensus size: 23
85714469 AAGTCTGTCT
*
85714479 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGAT-AG
85714503 GGA-AGGATTTAGGAGCTGATAG
1 GGAGAGGATTTAGGAGCTGATAG
85714525 GGAGAGGATTTAGGAGC
1 GGAGAGGATTTAGGAGC
85714542 AGATTAGGTG
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
22 5 0.14
23 29 0.78
24 3 0.08
ACGTcount: A:0.33, C:0.05, G:0.41, T:0.21
Consensus pattern (23 bp):
GGAGAGGATTTAGGAGCTGATAG
Found at i:85716005 original size:27 final size:26
Alignment explanation
Indices: 85715965--85716076 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
85715955 AGGAAGCGTC
*
85715965 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
85715992 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
85716019 CTGGTGGTTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
85716047 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
85716073 CTGG
1 CTGG
85716077 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 7 0.09
27 51 0.69
28 16 0.22
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:85716069 original size:54 final size:54
Alignment explanation
Indices: 85715965--85716076 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
85715955 AGGAAGCGTC
*
85715965 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * *
85716019 CTGGTGGTTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
85716073 CTGG
1 CTGG
85716077 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:85718211 original size:50 final size:50
Alignment explanation
Indices: 85718153--85718252 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
85718143 TTATTTTGAG
85718153 AATGAAAAGTTGAATAAGATTATGCTAAATGTGAATTGTTGGCATTCGGC
1 AATGAAAAGTTGAATAAGATTATGCTAAATGTGAATTGTTGGCATTCGGC
85718203 AATGAAAAGTTGAATAAGATTATGCTAAATGTGAATTGTTGGCATTCGGC
1 AATGAAAAGTTGAATAAGATTATGCTAAATGTGAATTGTTGGCATTCGGC
85718253 CAAGGTAAAC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.36, C:0.08, G:0.24, T:0.32
Consensus pattern (50 bp):
AATGAAAAGTTGAATAAGATTATGCTAAATGTGAATTGTTGGCATTCGGC
Found at i:85721112 original size:43 final size:43
Alignment explanation
Indices: 85721065--85721177 Score: 122
Period size: 42 Copynumber: 2.7 Consensus size: 43
85721055 CCTTGATTGA
* * * **
85721065 GATTTACGTATAAGACCATGTTTGGGAGATTGGCATCG-TATCT
1 GATTTACATGTAAGACCATGTTTGGGACAGAGGCATCGATAT-T
* *
85721108 GATTT-CATGTAAGACCCTGTTTGGAACAGAGGCATCGATATT
1 GATTTACATGTAAGACCATGTTTGGGACAGAGGCATCGATATT
* *
85721150 GAATTACATGTAAGACCACGTTTGGGAC
1 GATTTACATGTAAGACCATGTTTGGGAC
85721178 GTCGGCATTG
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
42 30 0.53
43 27 0.47
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (43 bp):
GATTTACATGTAAGACCATGTTTGGGACAGAGGCATCGATATT
Found at i:85721185 original size:43 final size:42
Alignment explanation
Indices: 85721075--85721185 Score: 104
Period size: 43 Copynumber: 2.6 Consensus size: 42
85721065 GATTTACGTA
* * *
85721075 TAAGACCATGTTTGGGA-GATTGGCATCGTATCTGATTTCATG
1 TAAGACCACGTTTGGGACG-TAGGCATCGTATCTGATTACATG
*
85721117 TAAGACC-CTGTTTGGAACAG-AGGCATCGATAT-TGAATTACATG
1 TAAGACCAC-GTTTGGGAC-GTAGGCATCG-TATCTG-ATTACATG
*
85721160 TAAGACCACGTTTGGGACGTCGGCAT
1 TAAGACCACGTTTGGGACGTAGGCAT
85721186 TGTACTTGGT
Statistics
Matches: 56, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
42 24 0.43
43 30 0.54
44 2 0.04
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (42 bp):
TAAGACCACGTTTGGGACGTAGGCATCGTATCTGATTACATG
Found at i:85722677 original size:39 final size:40
Alignment explanation
Indices: 85722632--85722855 Score: 224
Period size: 39 Copynumber: 5.7 Consensus size: 40
85722622 GCTCCTCGTT
* * * *
85722632 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
85722672 C-AATGCCTTCGGGACTTAACCCGGATTTAATGACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
85722711 CGAATGCCTTC-GGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
85722750 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
85722790 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
85722831 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
85722856 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 22, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
39 72 0.46
40 68 0.44
41 15 0.10
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:85722763 original size:79 final size:77
Alignment explanation
Indices: 85722632--85722855 Score: 236
Period size: 79 Copynumber: 2.8 Consensus size: 77
85722622 GCTCCTCGTT
* * * *
85722632 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGG-
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
*
85722696 ATTT-AATGACTCGCA
64 ATTTGTAT--CTCGCA
* * *
85722711 CGAATGCCTTCGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGA
85722776 ATTTGTATCTCGCA
64 ATTTGTATCTCGCA
* * * * *
85722790 CAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCGG
85722855 A
63 A
85722856 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 13
0.81 0.11 0.09
Matches are distributed among these distances:
77 1 0.01
78 25 0.20
79 48 0.39
80 37 0.30
81 11 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (77 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAAT
TTGTATCTCGCA
Found at i:85722864 original size:41 final size:41
Alignment explanation
Indices: 85722787--85722864 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
85722777 TTTGTATCTC
* * *
85722787 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
85722828 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
85722865 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:85727806 original size:49 final size:49
Alignment explanation
Indices: 85727753--85727878 Score: 200
Period size: 49 Copynumber: 2.6 Consensus size: 49
85727743 CTACACGCTT
*
85727753 GTGTGGCCCACACGGCCCAAGAAGCCCAACCTATGTGGCCCACACACCC
1 GTGTGGTCCACACGGCCCAAGAAGCCCAACCTATGTGGCCCACACACCC
* *
85727802 GTGTGGTCCATACAGCCCAAGAAGCCCAACCTATGTGGCCCACACACCC
1 GTGTGGTCCACACGGCCCAAGAAGCCCAACCTATGTGGCCCACACACCC
*
85727851 GTATGGTCCACACGGCCCAA-ATAGCCCA
1 GTGTGGTCCACACGGCCCAAGA-AGCCCA
85727879 GACCGTGTGT
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
48 1 0.01
49 69 0.99
ACGTcount: A:0.26, C:0.40, G:0.21, T:0.13
Consensus pattern (49 bp):
GTGTGGTCCACACGGCCCAAGAAGCCCAACCTATGTGGCCCACACACCC
Found at i:85730616 original size:34 final size:34
Alignment explanation
Indices: 85730573--85730638 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
85730563 ACCAAGGCTC
*
85730573 CTAAAACAACCTTTCATTGAATCTATTAACTAAG
1 CTAAAACAACCTTCCATTGAATCTATTAACTAAG
* *
85730607 CTAAAACAACCTTCCATTGTATCTATTGACTA
1 CTAAAACAACCTTCCATTGAATCTATTAACTA
85730639 CGTGTTTTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.33
Consensus pattern (34 bp):
CTAAAACAACCTTCCATTGAATCTATTAACTAAG
Found at i:85731184 original size:40 final size:40
Alignment explanation
Indices: 85731081--85731287 Score: 189
Period size: 41 Copynumber: 5.1 Consensus size: 40
85731071 GTTAGTGGCG
* * * * **
85731081 TTTTCTCATAAACGCCGTAAAAGGTAAGGCAATAGCGGTG
1 TTTTCCCAGAAACACCGCAAAAGGTAAGGCAATAGCGGCA
* *
85731121 TTCTTCCCATAAACACCGTAAAAGGTAAGGCAATAGCGGCA
1 TT-TTCCCAGAAACACCGCAAAAGGTAAGGCAATAGCGGCA
***
85731162 TTTTCCCAGAAATGTCGCAAAAGGTAAGGCAATAGCGGCA
1 TTTTCCCAGAAACACCGCAAAAGGTAAGGCAATAGCGGCA
* * * * * *
85731202 TTTTTCCCAGGAACACCACAAAAGGTAAAGCAATAGTGACGT
1 -TTTTCCCAGAAACACCGCAAAAGGTAAGGCAATAGCGGC-A
** * * *
85731244 TTTTTTCATAAACACTGCAAAAGGTATGGCAATAGCGGCA
1 TTTTCCCAGAAACACCGCAAAAGGTAAGGCAATAGCGGCA
85731284 TTTT
1 TTTT
85731288 TTCCATAAAC
Statistics
Matches: 135, Mismatches: 29, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
40 39 0.29
41 96 0.71
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (40 bp):
TTTTCCCAGAAACACCGCAAAAGGTAAGGCAATAGCGGCA
Found at i:85732628 original size:13 final size:14
Alignment explanation
Indices: 85732602--85732634 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
85732592 ATAAAATATA
85732602 AATTTATATTTAAT
1 AATTTATATTTAAT
85732616 AATTTAT-TTTAAT
1 AATTTATATTTAAT
85732629 ATATTT
1 A-ATTT
85732635 CATTAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (14 bp):
AATTTATATTTAAT
Found at i:85734261 original size:8 final size:8
Alignment explanation
Indices: 85734237--85734278 Score: 68
Period size: 8 Copynumber: 5.4 Consensus size: 8
85734227 AAATTATTTA
*
85734237 TTTGCAAT
1 TTTGTAAT
85734245 TTT-TAAT
1 TTTGTAAT
85734252 TTTGTAAT
1 TTTGTAAT
85734260 TTTGTAAT
1 TTTGTAAT
85734268 TTTGTAAT
1 TTTGTAAT
85734276 TTT
1 TTT
85734279 CTTTTCAGGT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
7 6 0.19
8 26 0.81
ACGTcount: A:0.24, C:0.02, G:0.10, T:0.64
Consensus pattern (8 bp):
TTTGTAAT
Found at i:85742274 original size:13 final size:14
Alignment explanation
Indices: 85742248--85742280 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
85742238 ATAAAATATA
85742248 AATTTATATTTAAT
1 AATTTATATTTAAT
85742262 AATTTAT-TTTAAT
1 AATTTATATTTAAT
85742275 ATATTT
1 A-ATTT
85742281 CATTAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (14 bp):
AATTTATATTTAAT
Found at i:85745417 original size:40 final size:40
Alignment explanation
Indices: 85745353--85745446 Score: 102
Period size: 40 Copynumber: 2.4 Consensus size: 40
85745343 CATCTCTGTT
* * * * *
85745353 CAACCCAACACACC-A-TGTGGGGATAGAATCGACCTACC
1 CAACCCTACACACCAAGTATGGGGATAAAATCAACCCACC
* *
85745391 CAGCCCTACACACCAAGTATGGGGATAAAATCAACCCATC
1 CAACCCTACACACCAAGTATGGGGATAAAATCAACCCACC
*
85745431 CAACCCTACATACCAA
1 CAACCCTACACACCAA
85745447 AAGGTACAGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
38 12 0.27
39 1 0.02
40 32 0.71
ACGTcount: A:0.37, C:0.35, G:0.14, T:0.14
Consensus pattern (40 bp):
CAACCCTACACACCAAGTATGGGGATAAAATCAACCCACC
Found at i:85745641 original size:34 final size:34
Alignment explanation
Indices: 85745587--85745664 Score: 106
Period size: 34 Copynumber: 2.3 Consensus size: 34
85745577 TGCTTTTATG
* *
85745587 CAGATAT-CAGATCATGCCATCATCAAG-CTAGAA
1 CAGATATACAAATCATACCATCATCAAGTC-AGAA
85745620 CAGATATACAAATCATACCATCATCAAGTCAGAA
1 CAGATATACAAATCATACCATCATCAAGTCAGAA
*
85745654 CAAATATACAA
1 CAGATATACAA
85745665 CATTAGACAG
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
33 7 0.17
34 32 0.80
35 1 0.03
ACGTcount: A:0.46, C:0.23, G:0.10, T:0.21
Consensus pattern (34 bp):
CAGATATACAAATCATACCATCATCAAGTCAGAA
Found at i:85747731 original size:46 final size:45
Alignment explanation
Indices: 85747681--85747856 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
85747671 TGGTTGAGCA
85747681 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
85747727 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
85747774 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
85747820 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
85747857 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:85747837 original size:93 final size:93
Alignment explanation
Indices: 85747678--85747848 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
85747668 GGATGGTTGA
* *
85747678 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
85747743 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
85747771 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
85747836 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
85747849 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:85750842 original size:15 final size:15
Alignment explanation
Indices: 85750803--85750882 Score: 76
Period size: 15 Copynumber: 5.4 Consensus size: 15
85750793 GTATCTTGGG
*
85750803 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
85750818 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
85750833 TTTCTTTATT-TCGGG
1 TTTCTTTATTCT-GGA
*
85750848 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
85750863 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
85750877 TTTCTT
1 TTTCTT
85750883 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
14 10 0.19
15 40 0.75
16 3 0.06
ACGTcount: A:0.10, C:0.17, G:0.14, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:85753430 original size:46 final size:45
Alignment explanation
Indices: 85753267--85753440 Score: 197
Period size: 46 Copynumber: 3.8 Consensus size: 45
85753257 GGTTGAGCAT
* *
85753267 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
*** * * * *
85753312 CCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCAACGC
*
85753357 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACGC
* *
85753405 CCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
85753441 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
45 31 0.29
46 45 0.42
47 28 0.26
48 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
Found at i:85761109 original size:40 final size:40
Alignment explanation
Indices: 85761044--85761138 Score: 113
Period size: 40 Copynumber: 2.4 Consensus size: 40
85761034 CCATCTTCGT
* * * * *
85761044 CCAACCCAACACACC-A-TGTGGGGATAGAATCGACCTAC
1 CCAACCCTACACACCAAGTATGGGGATAAAATCAACCCAC
* *
85761082 CCAGCCCTACACACCAAGTATGGGGATAAAATCAACCCAT
1 CCAACCCTACACACCAAGTATGGGGATAAAATCAACCCAC
85761122 CCAACCCTACACACCAA
1 CCAACCCTACACACCAA
85761139 AAGGTACAGT
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
38 13 0.28
39 1 0.02
40 33 0.70
ACGTcount: A:0.37, C:0.37, G:0.14, T:0.13
Consensus pattern (40 bp):
CCAACCCTACACACCAAGTATGGGGATAAAATCAACCCAC
Found at i:85763111 original size:23 final size:23
Alignment explanation
Indices: 85763081--85763151 Score: 124
Period size: 23 Copynumber: 3.1 Consensus size: 23
85763071 TTGCAAACTG
*
85763081 TTAAAGCCTTCATTGTCCTATAC
1 TTAAAGCCTTCATCGTCCTATAC
85763104 TTAAAGCCTTCATCGTCCTATAC
1 TTAAAGCCTTCATCGTCCTATAC
*
85763127 TTAAAGCCTTCATCATCCTATAC
1 TTAAAGCCTTCATCGTCCTATAC
85763150 TT
1 TT
85763152 GCAAATTCTT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.27, C:0.28, G:0.07, T:0.38
Consensus pattern (23 bp):
TTAAAGCCTTCATCGTCCTATAC
Found at i:85763685 original size:20 final size:20
Alignment explanation
Indices: 85763641--85763688 Score: 64
Period size: 19 Copynumber: 2.4 Consensus size: 20
85763631 ATTTTAGTAT
85763641 TAACAAAATAAACAAAATGAA
1 TAAC-AAATAAACAAAATGAA
85763662 -AACAAATAAACAAAA-GAAA
1 TAACAAATAAACAAAATG-AA
85763681 TAACAAAT
1 TAACAAAT
85763689 CTTTAATATC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 1 0.04
19 14 0.56
20 10 0.40
ACGTcount: A:0.73, C:0.10, G:0.04, T:0.12
Consensus pattern (20 bp):
TAACAAATAAACAAAATGAA
Found at i:85768310 original size:13 final size:13
Alignment explanation
Indices: 85768292--85768320 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
85768282 TTTAGATTAA
85768292 TTAGTTAATTAGT
1 TTAGTTAATTAGT
85768305 TTAGTTAATTAGT
1 TTAGTTAATTAGT
85768318 TTA
1 TTA
85768321 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:85771942 original size:46 final size:46
Alignment explanation
Indices: 85771892--85772017 Score: 189
Period size: 46 Copynumber: 2.7 Consensus size: 46
85771882 TGGTTGAGCA
*
85771892 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
85771938 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGGGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
85771984 CCCGAGCTCATTGAGTGGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
85772018 GGGGCGGGTT
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 72 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:85782370 original size:28 final size:28
Alignment explanation
Indices: 85782320--85782433 Score: 81
Period size: 28 Copynumber: 3.9 Consensus size: 28
85782310 CTATTCAGAA
* *
85782320 ATCAGTGTTAA-CTGGGCCTTAGCCCAT
1 ATCAGTATTAATCTGGGCCATAGCCCAT
85782347 ATCAGTATTAATCTGGGCCATAGCCC-T
1 ATCAGTATTAATCTGGGCCATAGCCCAT
* * *
85782374 ATTACAATATCAGAGCATACCGGGCC-TAGCCCAT
1 A-T-CAGTAT--TA--AT-CTGGGCCATAGCCCAT
* *
85782408 ATCAGTATCAGTCTGGGCCATAGCCC
1 ATCAGTATTAATCTGGGCCATAGCCC
85782434 TATTACAAGT
Statistics
Matches: 68, Mismatches: 9, Indels: 19
0.71 0.09 0.20
Matches are distributed among these distances:
27 18 0.26
28 21 0.31
29 5 0.07
30 1 0.01
31 1 0.01
32 5 0.07
33 9 0.13
34 8 0.12
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (28 bp):
ATCAGTATTAATCTGGGCCATAGCCCAT
Found at i:85782505 original size:19 final size:20
Alignment explanation
Indices: 85782462--85782517 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
85782452 ATTGGGTCTT
85782462 GCCCATATTAACACAGTTGG
1 GCCCATATTAACACAGTTGG
* *
85782482 GCCCATTTTAATACAGTT-G
1 GCCCATATTAACACAGTTGG
* *
85782501 GCCCATAATAAAACAGT
1 GCCCATATTAACACAGT
85782518 CTCATATGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (20 bp):
GCCCATATTAACACAGTTGG
Found at i:85787970 original size:30 final size:30
Alignment explanation
Indices: 85787936--85787997 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
85787926 ATTTTTTGGG
85787936 ACGAAAATCCCTAAAAGAGGGAGAAATGTA
1 ACGAAAATCCCTAAAAGAGGGAGAAATGTA
*
85787966 ACGAAAATCCCTAAAAGGGGGAGAAATGTA
1 ACGAAAATCCCTAAAAGAGGGAGAAATGTA
85787996 AC
1 AC
85787998 ATCCCAAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.48, C:0.15, G:0.24, T:0.13
Consensus pattern (30 bp):
ACGAAAATCCCTAAAAGAGGGAGAAATGTA
Found at i:85808075 original size:28 final size:28
Alignment explanation
Indices: 85808043--85808126 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
85808033 AACTTTGATC
85808043 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
85808071 ACGTGTATCAG-A-T-GGT-TAGGC--C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
85808093 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
85808121 ACGTGT
1 ACGTGT
85808127 ACCAGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 2 0.05
25 8 0.19
26 2 0.05
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.29
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:85808112 original size:50 final size:49
Alignment explanation
Indices: 85807995--85808184 Score: 209
Period size: 50 Copynumber: 3.8 Consensus size: 49
85807985 TGAGGTCGCA
* * * * **
85807995 TGTGTAGTACTAAGTGTAGGCTACTATGCGTACCTGATAACTTTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA--TTGGCCACG
* **
85808046 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGCCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGCCACG
* * *
85808096 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGCCACG
* * * *
85808145 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCATATAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA
85808185 CCTTGTCTAC
Statistics
Matches: 119, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 42 0.35
50 44 0.37
51 33 0.28
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGCCACG
Found at i:85814286 original size:29 final size:29
Alignment explanation
Indices: 85814251--85814354 Score: 86
Period size: 29 Copynumber: 3.6 Consensus size: 29
85814241 GGTTGAAGAA
85814251 CTCGCACACACAGTGCTTCAATTACCGAT
1 CTCGCACACACAGTGCTTCAATTACCGAT
* ** **
85814280 CTCGCACACATAGTGC-TCGGTTAAAGGAAT
1 CTCGCACACACAGTGCTTCAATT-ACCG-AT
* * *
85814310 -TCGTACACACAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCTTCAATTACCGAT
* *
85814338 CTCGTACACAAAGTGCT
1 CTCGCACACACAGTGCT
85814355 CGGTTAAAGG
Statistics
Matches: 58, Mismatches: 13, Indels: 8
0.73 0.16 0.10
Matches are distributed among these distances:
28 6 0.10
29 46 0.79
30 6 0.10
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (29 bp):
CTCGCACACACAGTGCTTCAATTACCGAT
Found at i:85814341 original size:58 final size:58
Alignment explanation
Indices: 85814217--85814385 Score: 241
Period size: 58 Copynumber: 2.9 Consensus size: 58
85814207 GTGCCCACTG
* * * * *
85814217 ACCGATCTCGCACAGATAGTCCTCGGTTGAA-GAACTCGCACACACAGTGCTTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
*
85814274 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGTACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
* * * *
85814332 ACTGATCTCGTACACAAAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTC
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTC
85814386 TAATCATTCG
Statistics
Matches: 100, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
57 28 0.28
58 72 0.72
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (58 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
Found at i:85814600 original size:43 final size:43
Alignment explanation
Indices: 85814539--85814889 Score: 594
Period size: 43 Copynumber: 8.2 Consensus size: 43
85814529 CCTTGCTCGA
** *
85814539 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
85814582 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
85814625 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
85814668 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
85814711 ATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
**
85814754 ATCATTGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
85814797 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCCAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
85814840 ATCACAGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
85814883 ATCACCG
1 ATCACCG
85814890 AGTTTCATGC
Statistics
Matches: 293, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 293 1.00
ACGTcount: A:0.31, C:0.33, G:0.24, T:0.11
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
Found at i:85819458 original size:15 final size:15
Alignment explanation
Indices: 85819438--85819497 Score: 54
Period size: 15 Copynumber: 4.1 Consensus size: 15
85819428 TTGGGTTTTA
85819438 TTATTCTGGATTTCT
1 TTATTCTGGATTTCT
*
85819453 TTATTCTGGGTTT-T
1 TTATTCTGGATTTCT
*
85819467 TCTA-TCTTGAATTTCT
1 T-TATTC-TGGATTTCT
*
85819483 TTATTC-GGTTTTCT
1 TTATTCTGGATTTCT
85819497 T
1 T
85819498 CTTATCTTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 9
0.72 0.10 0.18
Matches are distributed among these distances:
14 11 0.31
15 21 0.58
16 4 0.11
ACGTcount: A:0.12, C:0.13, G:0.13, T:0.62
Consensus pattern (15 bp):
TTATTCTGGATTTCT
Found at i:85819465 original size:30 final size:30
Alignment explanation
Indices: 85819447--85819505 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 30
85819437 ATTATTCTGG
85819447 ATTTCTTTATTCTGGGTTTTTCTATCTTGA
1 ATTTCTTTATTCTGGGTTTTTCTATCTTGA
*
85819477 ATTTCTTTATTC-GGTTTTCTTCTTATCTT
1 ATTTCTTTATTCTGGGTTT-TTC-TATCTT
85819506 TATTCCGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 5 0.19
30 15 0.58
31 6 0.23
ACGTcount: A:0.12, C:0.15, G:0.10, T:0.63
Consensus pattern (30 bp):
ATTTCTTTATTCTGGGTTTTTCTATCTTGA
Found at i:85822010 original size:50 final size:51
Alignment explanation
Indices: 85821893--85822070 Score: 200
Period size: 50 Copynumber: 3.5 Consensus size: 51
85821883 TGAGGTCGCA
* * *
85821893 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTAGATCACG
* * * ** *
85821944 TGTGTAGTACTAAGTGCAGGCTGCTACGTGTATCAGAT-GGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTAGATCACG
* * * *
85821994 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-TT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTAGATCACG
* *
85822043 TGTGTAGTACTATGTGAAGGCTACTATG
1 TGTGTAGTACTAAGTGCAGGCTACTATG
85822071 CATACCATAT
Statistics
Matches: 108, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 31 0.29
50 44 0.41
51 33 0.31
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTAGATCACG
Found at i:85824710 original size:122 final size:122
Alignment explanation
Indices: 85824556--85824782 Score: 384
Period size: 122 Copynumber: 1.9 Consensus size: 122
85824546 CCAAAATAAC
* *
85824556 CATGAGAATGAGAATAGGAATGTCATGGGTATG-GGATTTTCCTAATAACTCGATTTAACATGAA
1 CATGAGAATGAGAATAGGAATGTCATAGGTATGAGG-TTTTCCTAATAACTCGATTTAACACGAA
* *
85824620 ATGTATGATAACTAACCTAAGAATTCAAATTAAATGATAGACATTGGCATGGTAATAG
65 ATGTATGATAACTAACCTAAGAATGCAAACTAAATGATAGACATTGGCATGGTAATAG
* *
85824678 CATGAGAATGAGCATAGTAATGTCATAGGTATGAGGTTTTCCTAATAACTCGATTTAACACGAAA
1 CATGAGAATGAGAATAGGAATGTCATAGGTATGAGGTTTTCCTAATAACTCGATTTAACACGAAA
85824743 TGTATGATAACTAACCTAAGAATGCAAACTAAATGATAGA
66 TGTATGATAACTAACCTAAGAATGCAAACTAAATGATAGA
85824783 ATAATGAGAA
Statistics
Matches: 98, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
122 96 0.98
123 2 0.02
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (122 bp):
CATGAGAATGAGAATAGGAATGTCATAGGTATGAGGTTTTCCTAATAACTCGATTTAACACGAAA
TGTATGATAACTAACCTAAGAATGCAAACTAAATGATAGACATTGGCATGGTAATAG
Found at i:85828316 original size:30 final size:30
Alignment explanation
Indices: 85828282--85828340 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
85828272 AAGAGAGGGA
*
85828282 AAAATTAAATTA-ATAAGTAATAAAAATAAT
1 AAAATTAAATTATAT-AGTAAGAAAAATAAT
*
85828312 AAAATTAAATTATATTGTAAGAAAAATAA
1 AAAATTAAATTATATAGTAAGAAAAATAA
85828341 ATGGCTAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 24 0.92
31 2 0.08
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (30 bp):
AAAATTAAATTATATAGTAAGAAAAATAAT
Found at i:85832548 original size:14 final size:14
Alignment explanation
Indices: 85832529--85832606 Score: 66
Period size: 14 Copynumber: 5.4 Consensus size: 14
85832519 CAAAGATAAC
*
85832529 AAGAAAACCGAATA
1 AAGAAATCCGAATA
*
85832543 AAGAAATCCAAGATA
1 AAGAAATCCGA-ATA
* *
85832558 GAGAAACCCGGAATA
1 AAGAAATCC-GAATA
*
85832573 AAGAAATCAGAATA
1 AAGAAATCCGAATA
* * *
85832587 AAGAGATCAGGATA
1 AAGAAATCCGAATA
85832601 AAGAAA
1 AAGAAA
85832607 CCCAAGATAC
Statistics
Matches: 51, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
14 31 0.61
15 19 0.37
16 1 0.02
ACGTcount: A:0.59, C:0.12, G:0.19, T:0.10
Consensus pattern (14 bp):
AAGAAATCCGAATA
Found at i:85835678 original size:93 final size:93
Alignment explanation
Indices: 85835519--85835690 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
85835509 CGCCCATAAG
* * * *
85835519 CGAACTCGGACTCAACTAAACGAGCTCGGGCGTTCGCATCCATAGGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTAAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
85835584 ACGACTTCGGATGCCTAGTTACATTTCA
66 ACGACTTCGGATGCCTAGTTACATTTCA
* *
85835612 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTAAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
85835677 ACGAGTTCGGATGC
66 ACGACTTCGGATGC
85835691 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTAAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGACTTCGGATGCCTAGTTACATTTCA
Found at i:85835680 original size:46 final size:46
Alignment explanation
Indices: 85835512--85835687 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
85835502 TGTAACTCGC
* * * *
85835512 CCATAAGCGAACTCGGACTCAACTAAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * * *
85835558 CCATAGGTGAACTCGGACTCAACTCAACGACTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
85835608 --TTCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
85835651 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
85835688 TGCTCAACCA
Statistics
Matches: 102, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 59 0.58
47 27 0.26
48 1 0.01
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:85835706 original size:46 final size:45
Alignment explanation
Indices: 85835564--85835706 Score: 114
Period size: 46 Copynumber: 3.1 Consensus size: 45
85835554 GCATCCATAG
* *
85835564 GTGAACTCGGACTCAACTCAACGACTTCGGATGC-CTAGTTA-CATTTCA
1 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT-A
* * * * * *
85835612 -CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AA
1 GTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCTA
85835657 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTA
1 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CTA
85835703 GTGA
1 GTGA
85835707 CATGTCACTT
Statistics
Matches: 76, Mismatches: 12, Indels: 16
0.73 0.12 0.15
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 32 0.42
47 29 0.38
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (45 bp):
GTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTA
Found at i:85842361 original size:43 final size:43
Alignment explanation
Indices: 85842313--85842429 Score: 155
Period size: 43 Copynumber: 2.7 Consensus size: 43
85842303 AGTGGCGTTC
*
85842313 TCCCACAAACGCCGGTAAAGAACATGACCTATAGCAGG-GCTTT
1 TCCCACAAACGCCGCTAAAGAACATGACCT-TAGCAGGTGCTTT
* * * * **
85842356 TCCCACAGACGCCACTAAAGAACATGATCTTTGGTGGTGCTTT
1 TCCCACAAACGCCGCTAAAGAACATGACCTTAGCAGGTGCTTT
85842399 TCCCACAAACGCCGCTAAAGAACATGACCTT
1 TCCCACAAACGCCGCTAAAGAACATGACCTT
85842430 TAGCCATACT
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 4 0.06
43 59 0.94
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (43 bp):
TCCCACAAACGCCGCTAAAGAACATGACCTTAGCAGGTGCTTT
Found at i:85842442 original size:43 final size:42
Alignment explanation
Indices: 85842313--85842467 Score: 148
Period size: 43 Copynumber: 3.6 Consensus size: 42
85842303 AGTGGCGTTC
** * *
85842313 TCCCACAAACGCCGGTAAAGAACATGACCTATAGCAGGGCTTT
1 TCCCACAAACGCCACTAAAGAACATGACCTTTAGCA-TGCTTT
* * * **
85842356 TCCCACAGACGCCACTAAAGAACATGATCTTTGGTGGTGCTTT
1 TCCCACAAACGCCACTAAAGAACATGACCTTTAG-CATGCTTT
* *
85842399 TCCCACAAACGCCGCTAAAGAACATGACCTTTAGCCATACTTT
1 TCCCACAAACGCCACTAAAGAACATGACCTTTAG-CATGCTTT
* * * *
85842442 TACTAAAAACGCCACTAAAGATCATG
1 TCCCACAAACGCCACTAAAGAACATG
85842468 TTCTTTACCG
Statistics
Matches: 89, Mismatches: 22, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
43 89 1.00
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.23
Consensus pattern (42 bp):
TCCCACAAACGCCACTAAAGAACATGACCTTTAGCATGCTTT
Found at i:85842458 original size:86 final size:86
Alignment explanation
Indices: 85842313--85842473 Score: 216
Period size: 86 Copynumber: 1.9 Consensus size: 86
85842303 AGTGGCGTTC
* * * * *
85842313 TCCCACAAACGCCGGTAAAGAACATGACCTATAGCAGGGCTTTTCCCACAGACGCCACTAAAGAA
1 TCCCACAAACGCCGCTAAAGAACATGACCTATAGCAGGACTTTTACCAAAAACGCCACTAAAGAA
85842378 CATGATCTTTGGTGGTGCTTT
66 CATGATCTTTGGTGGTGCTTT
* * *
85842399 TCCCACAAACGCCGCTAAAGAACATGACCTTTAGCCA-TACTTTTACTAAAAACGCCACTAAAGA
1 TCCCACAAACGCCGCTAAAGAACATGACCTATAG-CAGGACTTTTACCAAAAACGCCACTAAAGA
* *
85842463 TCATGTTCTTT
65 ACATGATCTTT
85842474 ACCGGTGCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
86 62 0.97
87 2 0.03
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (86 bp):
TCCCACAAACGCCGCTAAAGAACATGACCTATAGCAGGACTTTTACCAAAAACGCCACTAAAGAA
CATGATCTTTGGTGGTGCTTT
Found at i:85842485 original size:43 final size:43
Alignment explanation
Indices: 85842319--85842485 Score: 122
Period size: 43 Copynumber: 3.9 Consensus size: 43
85842309 GTTCTCCCAC
** * * * * *
85842319 AAACGCCGGTAAAGAACATGACCTATAGCAGG-GCTTTTCCCAC
1 AAACGCCACTAAAGAACATGATCTTTA-CCGGTGCTTTTACCAA
* *** * *
85842362 AGACGCCACTAAAGAACATGATCTTTGGTGGTGCTTTTCCCAC
1 AAACGCCACTAAAGAACATGATCTTTACCGGTGCTTTTACCAA
* * * * *
85842405 AAACGCCGCTAAAGAACATGACCTTTAGCC-ATACTTTTACTAA
1 AAACGCCACTAAAGAACATGATCTTTA-CCGGTGCTTTTACCAA
* *
85842448 AAACGCCACTAAAGATCATGTTCTTTACCGGTGCTTTT
1 AAACGCCACTAAAGAACATGATCTTTACCGGTGCTTTT
85842486 TCAAAAAATG
Statistics
Matches: 96, Mismatches: 25, Indels: 6
0.76 0.20 0.05
Matches are distributed among these distances:
42 4 0.04
43 92 0.96
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (43 bp):
AAACGCCACTAAAGAACATGATCTTTACCGGTGCTTTTACCAA
Found at i:85843877 original size:3 final size:3
Alignment explanation
Indices: 85843869--85844008 Score: 96
Period size: 3 Copynumber: 47.0 Consensus size: 3
85843859 AAGATGGAAC
* * * *
85843869 AAT AAT AAT AA- AAT AA- AAT AAA AAT AAA AAT ACATT AAT AAG AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-A-T AAT AAT AAT
* * *
85843914 AAT AAT -AT ATT AAT -AT AAAT AGT AAT AA- AA- AGAT AAT AAT AAC
1 AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT A-AT AAT AAT AAT
* *
85843957 AAT AAT AAT AAT AGT AAC AAT AAT AAT AAT AAT AAT ACA- AATT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AA-T AAT
85844003 AAT AAT
1 AAT AAT
85844009 GATGATGTAA
Statistics
Matches: 107, Mismatches: 18, Indels: 24
0.72 0.12 0.16
Matches are distributed among these distances:
2 12 0.11
3 85 0.79
4 8 0.07
5 2 0.02
ACGTcount: A:0.65, C:0.03, G:0.04, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:85843908 original size:30 final size:29
Alignment explanation
Indices: 85843848--85843909 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 29
85843838 AATGAAGACA
* *
85843848 AAAATAAAATAAAGATGGAACAATAATAAT
1 AAAATAAAATAAAAAT-GAAAAATAATAAT
85843878 AAAATAAAATAAAAAT-AAAAATACATTAAT
1 AAAATAAAATAAAAATGAAAAATA-A-TAAT
85843908 AA
1 AA
85843910 GAGTAATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
28 6 0.21
29 1 0.04
30 21 0.75
ACGTcount: A:0.71, C:0.03, G:0.05, T:0.21
Consensus pattern (29 bp):
AAAATAAAATAAAAATGAAAAATAATAAT
Found at i:85844147 original size:3 final size:3
Alignment explanation
Indices: 85844139--85844323 Score: 76
Period size: 3 Copynumber: 60.3 Consensus size: 3
85844129 ACTAGAAAAG
* * * *
85844139 ATA ATA ATA AT- GTA TTA ATA AGA ATA ATA AT- ATA ATA ATA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
85844185 ATC ATGGA A-A ATA ATA ATA ATA TTA ATA TTTA A-A ATA A-G ATA ATA
1 ATA AT--A ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA
** * * * *
85844230 ATA GATA GA-A AGTA GCA GTA ATA ATA CGTTA ATA AGA GTA ATA ATA
1 ATA -ATA -ATA A-TA ATA ATA ATA ATA --ATA ATA ATA ATA ATA ATA
* * * *
85844276 ATA ATA ATA ATA ATA ATA GTA GTA GTA GATTA ATA ATA ATA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA -A-TA ATA ATA ATA ATA ATA
85844323 A
1 A
85844324 CAAAAAAATA
Statistics
Matches: 138, Mismatches: 29, Indels: 30
0.70 0.15 0.15
Matches are distributed among these distances:
2 9 0.07
3 115 0.83
4 9 0.07
5 5 0.04
ACGTcount: A:0.56, C:0.02, G:0.10, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:85844159 original size:17 final size:17
Alignment explanation
Indices: 85844139--85844323 Score: 74
Period size: 17 Copynumber: 10.2 Consensus size: 17
85844129 ACTAGAAAAG
*
85844139 ATAATAATAAT-GTATTA
1 ATAATAATAATAATA-TA
*
85844156 ATAAGAATAATAATATA
1 ATAATAATAATAATATA
*
85844173 ATAATAATAGTAATCATGGA
1 ATAATAATAATAAT-AT--A
85844193 A-AATAATAATAATATTA
1 ATAATAATAATAATA-TA
* *
85844210 ATATTTAA-AATAAGATA
1 ATA-ATAATAATAATATA
*
85844227 ATAATAGATAGA-AAGTAGCA
1 ATAATA-ATA-ATAA-TA-TA
* * *
85844247 GTAATAATACGTTA-ATA
1 ATAATAATA-ATAATATA
* *
85844264 AGAGTAATAATAATAATA
1 ATAATAATAATAAT-ATA
*
85844282 ATAATAATAATAGTAGTA
1 ATAATAATAATAATA-TA
*
85844300 GTAGATTAATAATAATAGTA
1 ATA-A-TAATAATAATA-TA
85844320 ATAA
1 ATAA
85844324 CAAAAAAATA
Statistics
Matches: 124, Mismatches: 26, Indels: 34
0.67 0.14 0.18
Matches are distributed among these distances:
16 4 0.03
17 40 0.32
18 34 0.27
19 22 0.18
20 24 0.19
ACGTcount: A:0.56, C:0.02, G:0.10, T:0.32
Consensus pattern (17 bp):
ATAATAATAATAATATA
Found at i:85844164 original size:20 final size:20
Alignment explanation
Indices: 85844141--85844232 Score: 62
Period size: 20 Copynumber: 4.5 Consensus size: 20
85844131 TAGAAAAGAT
* *
85844141 AATAATAATGTATTAATAAG
1 AATAATAATATAATAATAAG
*
85844161 AATAATAATATAATAATAAT
1 AATAATAATATAATAATAAG
* * * *
85844181 AGTAATCATGGAAAATAATAAT
1 AATAATAAT--ATAATAATAAG
*
85844203 AATATTAATATTTAA-AATAAG
1 AATAATAATA--TAATAATAAG
85844224 -ATAATAATA
1 AATAATAATA
85844233 GATAGAAAGT
Statistics
Matches: 56, Mismatches: 12, Indels: 8
0.74 0.16 0.11
Matches are distributed among these distances:
20 33 0.59
21 5 0.09
22 18 0.32
ACGTcount: A:0.59, C:0.01, G:0.07, T:0.34
Consensus pattern (20 bp):
AATAATAATATAATAATAAG
Found at i:85844198 original size:25 final size:24
Alignment explanation
Indices: 85844170--85844233 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 24
85844160 GAATAATAAT
85844170 ATAATAATAATAGTAATCATGGAAA
1 ATAATAATAATAGTAAT-ATGGAAA
* **
85844195 ATAATAATAATATTAATATTTAAA
1 ATAATAATAATAGTAATATGGAAA
85844219 ATAAGATAATAATAG
1 AT-A-ATAATAATAG
85844234 ATAGAAAGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
24 7 0.21
25 17 0.52
26 9 0.27
ACGTcount: A:0.58, C:0.02, G:0.08, T:0.33
Consensus pattern (24 bp):
ATAATAATAATAGTAATATGGAAA
Found at i:85845021 original size:17 final size:17
Alignment explanation
Indices: 85844994--85845026 Score: 50
Period size: 16 Copynumber: 1.9 Consensus size: 17
85844984 AGGAGGAAAA
85844994 TAAAAAAG-AAATAAAC
1 TAAAAAAGAAAATAAAC
85845010 TAAAAAATGAAAATAAA
1 TAAAAAA-GAAAATAAA
85845027 GACCTTAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 1 0.07
18 7 0.47
ACGTcount: A:0.76, C:0.03, G:0.06, T:0.15
Consensus pattern (17 bp):
TAAAAAAGAAAATAAAC
Found at i:85845832 original size:44 final size:45
Alignment explanation
Indices: 85845716--85845880 Score: 156
Period size: 44 Copynumber: 3.7 Consensus size: 45
85845706 TTGTCACCTT
* * * * * * *
85845716 AATCCGCTCCACTACAACTTCATGGAAATAGGATTAGTAG-CTTC
1 AATCTGCTCCGCTGCAACTTCAGGGAGATAAGATTAGTAGTCATC
* **
85845760 AATCTACTCCGCTGCAACTTCAAAGAGATAAGATTAGTAGTC-TC
1 AATCTGCTCCGCTGCAACTTCAGGGAGATAAGATTAGTAGTCATC
* *
85845804 AATCTGCTCCGCTGCAACTACAGGGAGATAAGATTGGTA-TCATC
1 AATCTGCTCCGCTGCAACTTCAGGGAGATAAGATTAGTAGTCATC
* ** * *
85845848 AGTCTGCTCCATTGCAACTTTAGGGGGATAAGA
1 AATCTGCTCCGCTGCAACTTCAGGGAGATAAGA
85845881 CTTGTAATTT
Statistics
Matches: 100, Mismatches: 19, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
43 2 0.02
44 97 0.97
45 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (45 bp):
AATCTGCTCCGCTGCAACTTCAGGGAGATAAGATTAGTAGTCATC
Found at i:85846323 original size:178 final size:179
Alignment explanation
Indices: 85845999--85846678 Score: 976
Period size: 178 Copynumber: 3.8 Consensus size: 179
85845989 CTGAAACTTT
* * * * ***
85845999 AGGGAGATAAGGTTGGTGGCTAAAATCTGCTCCTCTG-TACCTCGGGAAGATAAGATTTTTCACT
1 AGGGAGATAAGGCTAGTGGCTAAAATCTGCTCCCCTGCTACCTCAGGAAGATAAGATTCACCACT
* * *
85846063 TTCGATCTGCCCCACTGCTATCTCGAGGAGACAAAATCT-GAATCATCAGTCTGCTCCCTTGCT-
66 TTCAATCTGCCCCACTACTATCTCGAGGAGACAAGATCTAGAATCATCAGTCTGCTCCCTTGCTA
* * * * *
85846126 GCTTCAGGAAGATAAGACTATAACCTTCAGCCTACTCCCTTGCTACCTT
131 CCTTCAGGAAGATAAGACTACAATCTTCAGCCTGCTCCCTTGCTACCTA
* ***
85846175 AGGGAGATAAGGCTAGTGGCTAAAATCTGCTCCACTGCTACCTCAGGAAGATAAGATTCATGGCT
1 AGGGAGATAAGGCTAGTGGCTAAAATCTGCTCCCCTGCTACCTCAGGAAGATAAGATTCACCACT
* * * * *
85846240 TTCAATCTGCCCCACTACTATATTGAGGAAATAAGATCTAGAATCATCAGTCTGCTCCCTTGATA
66 TTCAATCTGCCCCACTACTATCTCGAGGAGACAAGATCTAGAATCATCAGTCTGCTCCCTTGCTA
*
85846305 CCTT-AGGACGATAAGACTACAATCTTCAGCCTGCTCCCTTGCTACCTA
131 CCTTCAGGAAGATAAGACTACAATCTTCAGCCTGCTCCCTTGCTACCTA
* *
85846353 AGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCCCTGCTACCTCAAGAAGATAAGATTCACCACT
1 AGGGAGATAAGGCTAGTGGCTAAAATCTGCTCCCCTGCTACCTCAGGAAGATAAGATTCACCACT
* * *
85846418 TTCAATCTGCTCCACTGCTATCTCGAGGAGACAAGATCTACAATCATCAGTCTGCTCCCTTGCTA
66 TTCAATCTGCCCCACTACTATCTCGAGGAGACAAGATCTAGAATCATCAGTCTGCTCCCTTGCTA
*
85846483 CCTT-AGGAAGATAATACTACAATCTTCAGCCTGCTCCCTTGCTACCTA
131 CCTTCAGGAAGATAAGACTACAATCTTCAGCCTGCTCCCTTGCTACCTA
* *
85846531 AGGGAGATAAGGCTAGTGGCTAAAATCTGCTCCCCTTCTACCTCAGGAAGATAAGATTCACCGCT
1 AGGGAGATAAGGCTAGTGGCTAAAATCTGCTCCCCTGCTACCTCAGGAAGATAAGATTCACCACT
* * * * *
85846596 TTCGATCTGCCCCACTACTATCTCAAGGAGACAAGATCTATAATCTTCAGTCTACTCCCTTGCTA
66 TTCAATCTGCCCCACTACTATCTCGAGGAGACAAGATCTAGAATCATCAGTCTGCTCCCTTGCTA
85846661 -CTTCAGGAAGATAAGACT
131 CCTTCAGGAAGATAAGACT
85846679 CGATGTCTTC
Statistics
Matches: 450, Mismatches: 50, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
176 34 0.08
177 57 0.13
178 356 0.79
179 3 0.01
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (179 bp):
AGGGAGATAAGGCTAGTGGCTAAAATCTGCTCCCCTGCTACCTCAGGAAGATAAGATTCACCACT
TTCAATCTGCCCCACTACTATCTCGAGGAGACAAGATCTAGAATCATCAGTCTGCTCCCTTGCTA
CCTTCAGGAAGATAAGACTACAATCTTCAGCCTGCTCCCTTGCTACCTA
Found at i:85846340 original size:44 final size:43
Alignment explanation
Indices: 85846103--85846541 Score: 208
Period size: 44 Copynumber: 9.9 Consensus size: 43
85846093 ACAAAATCTG
* * *
85846103 AATCATCAGTCTGCTCCCTTGCT-GCTTCAGGAAGATAAGACTAT
1 AATCTTCAGTCTGCTCCCTTGCTACCTT-AGG-AGATAAGACTAC
* * * * *
85846147 AACCTTCAGCCTACTCCCTTGCTACCTTAGGGAGATAAGGCTAG
1 AATCTTCAGTCTGCTCCCTTGCTACCTTA-GGAGATAAGACTAC
*** ** * * *
85846191 TGGCTAAAATCTGCTCCAC-TGCTACCTCAGGAAGATAAGA-TTC
1 AATCTTCAGTCTGCTCC-CTTGCTACCTTAGG-AGATAAGACTAC
* * * ** * *
85846234 -ATGGCTTTCAATCTGC-CCCACTACTATATTGAGGAAATAAGATCTAG
1 AAT--C-TTCAGTCTGCTCCC-TTGCTACCTT-AGGAGATAAGA-CTAC
* *
85846281 AATCATCAGTCTGCTCCCTTGATACCTTAGGACGATAAGACTAC
1 AATCTTCAGTCTGCTCCCTTGCTACCTTAGGA-GATAAGACTAC
* * * *
85846325 AATCTTCAGCCTGCTCCCTTGCTACCTAAGAGAGATAAGGCTAG
1 AATCTTCAGTCTGCTCCCTTGCTACCTTAG-GAGATAAGACTAC
*** ** * * * * *
85846369 TGGCTAAAATCTGCTCCCCTGCTACCTCAAGAAGATAAGATTCAC
1 AATCTTCAGTCTGCTCCCTTGCTACCT-TAGGAGATAAGACT-AC
* * * * *
85846414 CA-CTTTCAATCTGCTCCAC-TGCTATCTCGAGGAGACAAGATCTAC
1 AATC-TTCAGTCTGCTCC-CTTGCTACCT-TAGGAGATAAGA-CTAC
* *
85846459 AATCATCAGTCTGCTCCCTTGCTACCTTAGGAAGATAATACTAC
1 AATCTTCAGTCTGCTCCCTTGCTACCTTAGG-AGATAAGACTAC
* *
85846503 AATCTTCAGCCTGCTCCCTTGCTACCTAAGGGAGATAAG
1 AATCTTCAGTCTGCTCCCTTGCTACCTTA-GGAGATAAG
85846542 GCTAGTGGCT
Statistics
Matches: 293, Mismatches: 77, Indels: 50
0.70 0.18 0.12
Matches are distributed among these distances:
43 4 0.01
44 168 0.57
45 108 0.37
46 10 0.03
47 1 0.00
48 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (43 bp):
AATCTTCAGTCTGCTCCCTTGCTACCTTAGGAGATAAGACTAC
Found at i:85846717 original size:44 final size:44
Alignment explanation
Indices: 85846639--85846852 Score: 177
Period size: 44 Copynumber: 4.8 Consensus size: 44
85846629 AGATCTATAA
* *
85846639 TCTTCAGTCTACTCC-CTTGCTACTTCAGGAAGATAAGACTCGATG
1 TCTTCAGTCTGCTCCAC-TGCTAC-TCAGGGAGATAAGACTCGATG
* *
85846684 TCTTCGGTCTGCTCCACTGCTGCTCAGGGAGATAAGATCTAC-A-G
1 TCTTCAGTCTGCTCCACTGCTACTCAGGGAGATAAGA-CT-CGATG
* * * * *
85846728 TCTTTAGCCTGCTCCACTGCTATTCAGGGAGATAAGGCTAG-TG
1 TCTTCAGTCTGCTCCACTGCTACTCAGGGAGATAAGACTCGATG
* * * * * **
85846771 GCTTAATTCTGCTCC-CTTGCTACTTCAGAGAGATAAGATTCGCCG
1 TCTTCAGTCTGCTCCAC-TGCTAC-TCAGGGAGATAAGACTCGATG
* *
85846816 TCTTCAATCTGCTCCACTGCTGCTCAGGGAGATAAGA
1 TCTTCAGTCTGCTCCACTGCTACTCAGGGAGATAAGA
85846853 TCTACAATCT
Statistics
Matches: 134, Mismatches: 26, Indels: 19
0.75 0.15 0.11
Matches are distributed among these distances:
42 1 0.01
43 19 0.14
44 72 0.54
45 39 0.29
46 3 0.02
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.29
Consensus pattern (44 bp):
TCTTCAGTCTGCTCCACTGCTACTCAGGGAGATAAGACTCGATG
Found at i:85846804 original size:88 final size:87
Alignment explanation
Indices: 85846691--85846851 Score: 200
Period size: 88 Copynumber: 1.8 Consensus size: 87
85846681 ATGTCTTCGG
* * * * *
85846691 TCTGCTCCACTGCTGCTCAGGGAGATAAGA-TCTACAGTCTTTAGCCTGCTCCACTGCTATTCAG
1 TCTGCTCCACTGCTACTCAGAGAGATAAGATTC-ACAGTCTTCAACCTGCTCCACTGCTACTCAG
85846755 GGAGATAAGGCTAGTGGCTTAAT
65 GGAGATAAGGCTAGTGGCTTAAT
* * * *
85846778 TCTGCTCC-CTTGCTACTTCAGAGAGATAAGATTCGCCGTCTTCAATCTGCTCCACTGCTGCTCA
1 TCTGCTCCAC-TGCTAC-TCAGAGAGATAAGATTCACAGTCTTCAACCTGCTCCACTGCTACTCA
85846842 GGGAGATAAG
64 GGGAGATAAG
85846852 ATCTACAATC
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
86 1 0.02
87 13 0.21
88 46 0.74
89 2 0.03
ACGTcount: A:0.22, C:0.26, G:0.23, T:0.29
Consensus pattern (87 bp):
TCTGCTCCACTGCTACTCAGAGAGATAAGATTCACAGTCTTCAACCTGCTCCACTGCTACTCAGG
GAGATAAGGCTAGTGGCTTAAT
Found at i:85846864 original size:44 final size:44
Alignment explanation
Indices: 85846816--85847548 Score: 342
Period size: 44 Copynumber: 16.9 Consensus size: 44
85846806 AGATTCGCCG
* *
85846816 TCTTCAATCTGCTCCACTGCTGCTCAGGGAGATAAGATCTACAA
1 TCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAA
* * ** * * *
85846860 TCTTC-ATCATGCTTCACTAGTGCTTATAGAGATAGGATGGT---G
1 TCTTCAATC-TGCTCCACTACTGCTTAGGGAGATAAGAT-CTACAA
* * * *
85846902 GCTTAAATCTGCTCCACTACAGCTTAGGGAGACAAGATCTACAA
1 TCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAA
** * * * * * *
85846946 TCTTCAGCCTACTCCACTATTGCCTAGGGAGATAGGATGGTGGC--
1 TCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGAT-CT-ACAA
* * * *
85846990 -C-TAAATCTACTCCACTACTACTTAGGGAGATAAGAT-TCACCA
1 TCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-ACAA
* * *
85847032 TCTTCGATCTGCTCCACTACTACTTAGGGAGACAAGATCTACAA
1 TCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAA
** ** * * *
85847076 TCTTCAGCCTATTCCACTACTACTTAGGGAGAT-AGATGGT---G
1 TCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGAT-CTACAA
* * * * *
85847117 GCTTAAATCTGCTCCACTACTGCTTAGAGAGACAAGAT-TCACCA
1 TCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-ACAA
** * * *
85847161 TCTTTGATCTACTCCACTACTGCTTAGGGAGACAAGAT-TCACCA
1 TCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-ACAA
** * *
85847205 TCTTTGATCTACTCCACTACTGCTTAGGGAGACAAGATCTACAA
1 TCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAA
* ** * * * ** * *
85847249 TTTTCAGCCTACTCCACTATTGCTTATGGAGATGGGATGGT---G
1 TCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGAT-CTACAA
* * * * * * * *
85847291 GCTTAAATCTACTCCACTGCTGCTTAGAGAGACAAGATCTGCCA
1 TCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAA
* * * * *
85847335 TCTTCGATCTGCTTCGCTAATGCTTAGGGAGAAAAGAT-TCACAA
1 TCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-ACAA
* ** * * * * * * *
85847379 TCTTTAGCCTACTCTACTATTGCTTAGAGAGATAGGATGGT---G
1 TCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGAT-CTACAA
* * * * * *
85847421 GCTTAAATCTGCTCCACTACTGCTTAGAGAGACAAGAT-TCGCCA
1 TCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-ACAA
* *
85847465 TCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAA
1 TCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAA
** * * *
85847509 TCTTCAGCCTACTCCATTACTGCTTAGGGAGATAGGATCT
1 TCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
85847549 GTGAATTTAC
Statistics
Matches: 513, Mismatches: 144, Indels: 64
0.71 0.20 0.09
Matches are distributed among these distances:
40 4 0.01
41 26 0.05
42 112 0.22
43 13 0.03
44 350 0.68
45 6 0.01
46 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.29
Consensus pattern (44 bp):
TCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAA
Found at i:85846892 original size:132 final size:131
Alignment explanation
Indices: 85846650--85846916 Score: 333
Period size: 132 Copynumber: 2.0 Consensus size: 131
85846640 CTTCAGTCTA
* **
85846650 CTCCCTTGCTACTTCAGGAAGATAAGACTCGATGTCTTCGGTCTGCTCCACTGCTGCTCAGGGAG
1 CTCCCTTGCTACTTCAGGAAGATAAGACTCGACGTCTTCAATCTGCTCCACTGCTGCTCAGGGAG
* * * * * *
85846715 ATAAGATCTACAGTCTTTAGCCTGCTCCACTGCTATTCAGGGAGATAAGGCTAGTGGCTTAATTC
66 ATAAGATCTACAATCTTCAGCATGCTCCACTGCTATTCAGAGAGAT-AGGATAGTGGCTTAAATC
85846780 TG
130 TG
* *
85846782 CTCCCTTGCTACTTCA-GAGAGATAAGATTCGCCGTCTTCAATCTGCTCCACTGCTGCTCAGGGA
1 CTCCCTTGCTACTTCAGGA-AGATAAGACTCGACGTCTTCAATCTGCTCCACTGCTGCTCAGGGA
* * * * *
85846846 GATAAGATCTACAATCTTCATCATGCTTCACTAG-TGCTT-ATAGAGATAGGATGGTGGCTTAAA
65 GATAAGATCTACAATCTTCAGCATGCTCCACT-GCT-ATTCAGAGAGATAGGATAGTGGCTTAAA
85846909 TCTG
128 TCTG
85846913 CTCC
1 CTCC
85846917 ACTACAGCTT
Statistics
Matches: 116, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
131 23 0.20
132 90 0.78
133 3 0.03
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (131 bp):
CTCCCTTGCTACTTCAGGAAGATAAGACTCGACGTCTTCAATCTGCTCCACTGCTGCTCAGGGAG
ATAAGATCTACAATCTTCAGCATGCTCCACTGCTATTCAGAGAGATAGGATAGTGGCTTAAATCT
G
Found at i:85847189 original size:173 final size:174
Alignment explanation
Indices: 85846994--85847382 Score: 566
Period size: 173 Copynumber: 2.2 Consensus size: 174
85846984 GGTGGCCTAA
* * *
85846994 ATCTACTCCACTACTACTTAGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAG
1 ATCTACTCCACTACTGCTTAGGGAGAAAAGATTCACCATCTTCGATCTACTCCACTACTACTTAG
*
85847059 GGAGACAAGATCTACAATCTTCAGCCTATTCCACTACTACTTAGGGAGAT-AGATGGTGGCTTAA
66 GGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTACTTAGGGAGATGAGATGGTGGCTTAA
* *
85847123 ATCTGCTCCACTACTGCTTAGAGAGACAAGAT-TCACCATCTTTG
131 ATCTACTCCACTACTGCTTAGAGAGACAAGATCT-ACCATCTTCG
* * *
85847167 ATCTACTCCACTACTGCTTAGGGAGACAAGATTCACCATCTTTGATCTACTCCACTACTGCTTAG
1 ATCTACTCCACTACTGCTTAGGGAGAAAAGATTCACCATCTTCGATCTACTCCACTACTACTTAG
* * * * *
85847232 GGAGACAAGATCTACAATTTTCAGCCTACTCCACTATTGCTTATGGAGATGGGATGGTGGCTTAA
66 GGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTACTTAGGGAGATGAGATGGTGGCTTAA
* *
85847297 ATCTACTCCACTGCTGCTTAGAGAGACAAGATCTGCCATCTTCG
131 ATCTACTCCACTACTGCTTAGAGAGACAAGATCTACCATCTTCG
* * * * *
85847341 ATCTGCTTCGCTAATGCTTAGGGAGAAAAGATTCACAATCTT
1 ATCTACTCCACTACTGCTTAGGGAGAAAAGATTCACCATCTT
85847383 TAGCCTACTC
Statistics
Matches: 193, Mismatches: 21, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
173 105 0.54
174 87 0.45
175 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (174 bp):
ATCTACTCCACTACTGCTTAGGGAGAAAAGATTCACCATCTTCGATCTACTCCACTACTACTTAG
GGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTACTTAGGGAGATGAGATGGTGGCTTAA
ATCTACTCCACTACTGCTTAGAGAGACAAGATCTACCATCTTCG
Found at i:85847208 original size:129 final size:130
Alignment explanation
Indices: 85846908--85847236 Score: 475
Period size: 129 Copynumber: 2.5 Consensus size: 130
85846898 GGTGGCTTAA
* * *
85846908 ATCTGCTCCACTACAGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTATTGCCTAG
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
* *
85846973 GGAGATAGGATGGTGGCCTAAATCTACTCCACTACTACTTAGGGAGATAAGATTCACCATCTTCG
66 GGAGATAGGATGGTGGCCTAAATCTACTCCACTACTACTTAGAGAGACAAGATTCACCATCTTCG
* * *
85847038 ATCTGCTCCACTACTACTTAGGGAGACAAGATCTACAATCTTCAGCCTATTCCACTACTACTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
* * * *
85847103 GGAGATA-GATGGTGGCTTAAATCTGCTCCACTACTGCTTAGAGAGACAAGATTCACCATCTTTG
66 GGAGATAGGATGGTGGCCTAAATCTACTCCACTACTACTTAGAGAGACAAGATTCACCATCTTCG
* * * *
85847167 ATCTACTCCACTACTGCTTAGGGAGACAAGAT-TCACCATCTT-TGATCTACTCCACTACTGCTT
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCT-ACAATCTTCAG-CCTACTCCACTACTGCTT
85847230 AGGGAGA
64 AGGGAGA
85847237 CAAGATCTAC
Statistics
Matches: 178, Mismatches: 19, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
128 2 0.01
129 110 0.62
130 66 0.37
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (130 bp):
ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
GGAGATAGGATGGTGGCCTAAATCTACTCCACTACTACTTAGAGAGACAAGATTCACCATCTTCG
Found at i:85847327 original size:130 final size:129
Alignment explanation
Indices: 85847167--85847546 Score: 550
Period size: 130 Copynumber: 2.9 Consensus size: 129
85847157 ACCATCTTTG
* * * *
85847167 ATCTACTCCACTACTGCTTAGGGAGACAAGATTCACCATCTTTGATCTACTCCACTACTGCTTAG
1 ATCTACTCCACTACTGCTTAGAGAGACAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAG
*
85847232 GGAGACAAGATCTACAATTTTCAGCCTACTCCACTATTGCTTATGGAGATGGGATGGTGGCTTAA
66 GGAGACAAGATCTACAATTTTCAGCCTACTCCACTATTGCTTA-GGAGATAGGATGGTGGCTTAA
* * * *
85847297 ATCTACTCCACTGCTGCTTAGAGAGACAAGA-TCTGCCATCTTCGATCTGCTTCGCTAATGCTTA
1 ATCTACTCCACTACTGCTTAGAGAGACAAGATTC-GCCATCTTCGATCTGCTCCACTACTGCTTA
* *
85847361 GGGAGAAAAGAT-TCACAATCTTT-AGCCTACTCTACTATTGCTTAGAGAGATAGGATGGTGGCT
65 GGGAGACAAGATCT-ACAAT-TTTCAGCCTACTCCACTATTGCTTAG-GAGATAGGATGGTGGCT
85847424 TAA
127 TAA
*
85847427 ATCTGCTCCACTACTGCTTAGAGAGACAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAG
1 ATCTACTCCACTACTGCTTAGAGAGACAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAG
* * *
85847492 GGAGACAAGATCTACAATCTTCAGCCTACTCCATTACTGCTTAGGGAGATAGGAT
66 GGAGACAAGATCTACAATTTTCAGCCTACTCCACTATTGCTTA-GGAGATAGGAT
85847547 CTGTGAATTT
Statistics
Matches: 221, Mismatches: 21, Indels: 16
0.86 0.08 0.06
Matches are distributed among these distances:
129 6 0.03
130 208 0.94
131 7 0.03
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (129 bp):
ATCTACTCCACTACTGCTTAGAGAGACAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAG
GGAGACAAGATCTACAATTTTCAGCCTACTCCACTATTGCTTAGGAGATAGGATGGTGGCTTAA
Found at i:85847489 original size:86 final size:84
Alignment explanation
Indices: 85846821--85847504 Score: 293
Period size: 86 Copynumber: 7.9 Consensus size: 84
85846811 CGCCGTCTTC
* * * * * * *
85846821 AATCTGCTCCACTGCTGCTCAGGGAGATAAGATCTACAATCTTC-ATCATGCTTCACTAGTGCTT
1 AATCTACTCCACTACTGCTTAGGGAGACAAGATC-ACAATCTTCGATC-TACTCCACTACTGCTT
* * * *
85846885 ATAGAGATAGGATGGTGGCTTA
64 AGAGAGACAAGAT-CTGGCTTA
* * * * *
85846907 AATCTGCTCCACTACAGCTTAGGGAGACAAGATCTACAATCTTC-AGCCTACTCCACTATTGCCT
1 AATCTACTCCACTACTGCTTAGGGAGACAAGATC-ACAATCTTCGA-TCTACTCCACTACTGCTT
* * * * *
85846971 AGGGAGATAGGATGGTGGCCTA
64 AGAGAGACAAGAT-CTGGCTTA
* * * * *
85846993 AATCTACTCCACTACTACTTAGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTA
1 AATCTACTCCACTACTGCTTAGGGAGACAAGA-TCACAATCTTCGATCTACTCCACTACTGCTTA
* ** *
85847058 GGGAGACAAGATCTACAATCTTC
65 GAGAGACAAGATCT---GGCTTA
** * * * ***** ** *
85847081 AGCCTATTCCACTACTACTTAGGGAGA-TAGAT-GGTGGCTTAAATCTGCTCCACTACTGCTTAG
1 AATCTACTCCACTACTGCTTAGGGAGACAAGATCACAATCTTCGATCTACTCCACTACTGCTTAG
*** *
85847144 AGAGACAAGATTCACCATCTTT
66 AGAGACAAGA-T--CTGGCTTA
* * *
85847166 GATCTACTCCACTACTGCTTAGGGAGACAAGATTCACCATCTTTGATCTACTCCACTACTGCTTA
1 AATCTACTCCACTACTGCTTAGGGAGACAAGA-TCACAATCTTCGATCTACTCCACTACTGCTTA
* * *
85847231 GGGAGACAAGATCT-ACAATTTTC
65 GAGAGACAAGATCTGGC----TTA
** * * *** ***** ** *
85847254 AGCCTACTCCACTATTGCTTATGGAGATGGGAT-GGTGGCTTAAATCTACTCCACTGCTGCTTAG
1 AATCTACTCCACTACTGCTTAGGGAGACAAGATCACAATCTTCGATCTACTCCACTACTGCTTAG
* *
85847318 AGAGACAAGATCTGCCATCTTC
66 AGAGACAAGATCTG---GCTTA
* * * * * * * * * *
85847340 GATCTGCTTCGCTAATGCTTAGGGAGAAAAGATTCACAATCTT-TAGCCTACTCTACTATTGCTT
1 AATCTACTCCACTACTGCTTAGGGAGACAAGA-TCACAATCTTCGA-TCTACTCCACTACTGCTT
* * *
85847404 AGAGAGATAGGATGGTGGCTTA
64 AGAGAGACAAGAT-CTGGCTTA
* * * * *
85847426 AATCTGCTCCACTACTGCTTAGAGAGACAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTA
1 AATCTACTCCACTACTGCTTAGGGAGACAAGA-TCACAATCTTCGATCTACTCCACTACTGCTTA
*
85847491 GGGAGACAAGATCT
65 GAGAGACAAGATCT
85847505 ACAATCTTCA
Statistics
Matches: 450, Mismatches: 123, Indels: 51
0.72 0.20 0.08
Matches are distributed among these distances:
84 1 0.00
85 62 0.14
86 258 0.57
87 13 0.03
88 113 0.25
89 2 0.00
90 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (84 bp):
AATCTACTCCACTACTGCTTAGGGAGACAAGATCACAATCTTCGATCTACTCCACTACTGCTTAG
AGAGACAAGATCTGGCTTA
Found at i:85854615 original size:3 final size:3
Alignment explanation
Indices: 85854607--85855089 Score: 102
Period size: 3 Copynumber: 160.0 Consensus size: 3
85854597 AGGATGAAAC
* * *
85854607 AAT AAT AAT AAT -AT AA- AAT AAA AAT AAC AGT ACATT AAT AA- AAGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-A-T AAT AAT AA-T
* * *
85854652 AAT AAT -AT ATT AAT -AT AAAT AGT AAT -AT AA- AGAT AAT AAT AAC
1 AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT A-AT AAT AAT AAT
* *
85854695 AAT AAT AAT AAT AGT AAT AAT AAC AAT AATT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT
* * * *
85854741 ACA- AATT AAT AAT AAT GAT GAT -GT AAGT AAA AAT -AT AAGT AAAT
1 A-AT AA-T AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AA-T -AAT
* * * *
85854785 GCAA- AAG GA- AAT ATAT AAT GAAGT AAT AAT -AT AA- AATT AAT TAG
1 --AAT AAT AAT AAT A-AT AAT -AA-T AAT AAT AAT AAT AA-T AAT AAT
** * * * * * *
85854829 CCT AAT AA- CAT GAT AAT AAT ATT AGT AAC AA- AAC AAT AA- AAGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T
* * * *
85854872 AAT AA- AGT AGA- AA- ACAT AAT AAT AAT -GT ATT AAT AAG AAT AAT
1 AAT AAT AAT A-AT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
85854915 AAT AAT -AT AAT AAT AGT AAT CAT GGAA- AAT AAT AAT ATT AAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT --AAT AAT AAT AAT AAT AAT AAT
** * * **
85854959 TTT AAAT AA- GAT AAT AAT AAT AGAT AGA- AAGT AGT AGG AAT AAT ACATT
1 AAT -AAT AAT AAT AAT AAT AAT A-AT A-AT AA-T AAT AAT AAT AAT A-A-T
* * * * **
85855008 AAT AAG AGT AAT AGT AAT AAT AAT AAT GAT AAT AAT AAT AAT CGT AGAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT
* *
85855057 -AT AAT AAT AAT AAC AAT AAT AAAT AAA AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
85855090 TAATTTGAAA
Statistics
Matches: 349, Mismatches: 77, Indels: 108
0.65 0.14 0.20
Matches are distributed among these distances:
2 43 0.12
3 254 0.73
4 42 0.12
5 10 0.03
ACGTcount: A:0.59, C:0.03, G:0.08, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:85854616 original size:20 final size:18
Alignment explanation
Indices: 85854568--85854617 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 18
85854558 CATATATAAT
85854568 ACAATAATAATGAAGACAA
1 ACAATAATAAT-AAGACAA
*
85854587 A-AATAA-AATAAGGATGAA
1 ACAATAATAATAA-GA-CAA
85854605 ACAATAATAATAA
1 ACAATAATAATAA
85854618 TATAAAATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
16 2 0.08
17 5 0.19
18 8 0.31
19 6 0.23
20 5 0.19
ACGTcount: A:0.66, C:0.06, G:0.10, T:0.18
Consensus pattern (18 bp):
ACAATAATAATAAGACAA
Found at i:85854648 original size:20 final size:20
Alignment explanation
Indices: 85854623--85854743 Score: 59
Period size: 20 Copynumber: 5.9 Consensus size: 20
85854613 AATAATATAA
*
85854623 AATAAAAATAACAGTACATT
1 AATAAAAATAACAATACATT
* * *
85854643 AATAAAAGTAATAATATATT
1 AATAAAAATAACAATACATT
* ** * *
85854663 AATATAAATAGTAATATA-A
1 AATAAAAATAACAATACATT
*
85854682 AGATAATAATAACAATA-ATAAT
1 A-ATAAAAATAACAATACAT--T
85854704 AATAGTAATAATAACAATA-ATT
1 AATA--AA-AATAACAATACATT
* *
85854726 AATAATAATAATAATACA
1 AATAAAAATAACAATACA
85854744 AATTAATAAT
Statistics
Matches: 77, Mismatches: 16, Indels: 16
0.71 0.15 0.15
Matches are distributed among these distances:
19 11 0.14
20 44 0.57
21 3 0.04
22 6 0.08
23 1 0.01
24 12 0.16
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (20 bp):
AATAAAAATAACAATACATT
Found at i:85854925 original size:20 final size:22
Alignment explanation
Indices: 85854887--85854927 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
85854877 AGTAGAAAAC
85854887 ATAATAATAATGTATTAATAAGA
1 ATAATAATAA-GTATTAATAAGA
85854910 ATAATAATAA-TA-TAATAA
1 ATAATAATAAGTATTAATAA
85854928 TAGTAATCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 2 0.11
23 10 0.56
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (22 bp):
ATAATAATAAGTATTAATAAGA
Found at i:85856017 original size:5 final size:5
Alignment explanation
Indices: 85856007--85856043 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
85855997 ATTAGTGTGA
85856007 AAAAT AAAAT AAAAT AAAA- AATAA- AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AA-AAT AAAAT AAAAT AAA
85856044 GAACACAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 4 0.13
5 26 0.87
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:85856053 original size:19 final size:19
Alignment explanation
Indices: 85856012--85856056 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
85856002 TGTGAAAAAT
*
85856012 AAAATAAAATAAAAAATAA
1 AAAATAAAATAAAAAACAA
85856031 AAAATAAAATAAAGAACACAA
1 AAAATAAAATAAA-AA-ACAA
85856052 AAAAT
1 AAAAT
85856057 TTACGTGGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 13 0.57
20 2 0.09
21 8 0.35
ACGTcount: A:0.80, C:0.04, G:0.02, T:0.13
Consensus pattern (19 bp):
AAAATAAAATAAAAAACAA
Found at i:85861045 original size:24 final size:22
Alignment explanation
Indices: 85860990--85861046 Score: 62
Period size: 24 Copynumber: 2.5 Consensus size: 22
85860980 TTAATAATAC
85860990 ATAAAAA-AATGAATAAATAAT
1 ATAAAAATAATGAATAAATAAT
*
85861011 ATACAATAATAATGTATAAAATAAT
1 ATA-AA-AATAATGAAT-AAATAAT
85861036 ATGAAAAATAA
1 AT-AAAAATAA
85861047 AATGCAACAC
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
21 3 0.10
22 2 0.07
23 2 0.07
24 11 0.37
25 11 0.37
26 1 0.03
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.26
Consensus pattern (22 bp):
ATAAAAATAATGAATAAATAAT
Found at i:85861708 original size:29 final size:29
Alignment explanation
Indices: 85861676--85861736 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
85861666 TAAGGAAAGA
85861676 AAAACAAATGTAGGTGAAATACTAGATTG
1 AAAACAAATGTAGGTGAAATACTAGATTG
85861705 AAAACAAATGTAGGTGAAATACTAGATTG
1 AAAACAAATGTAGGTGAAATACTAGATTG
85861734 AAA
1 AAA
85861737 TGAAGTAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.51, C:0.07, G:0.20, T:0.23
Consensus pattern (29 bp):
AAAACAAATGTAGGTGAAATACTAGATTG
Found at i:85862901 original size:8 final size:8
Alignment explanation
Indices: 85862865--85862892 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
85862855 ATTATTTTGG
85862865 TTTTATTA
1 TTTTATTA
85862873 TTTTATTA
1 TTTTATTA
85862881 TTTTATTA
1 TTTTATTA
85862889 TTTT
1 TTTT
85862893 TATTTTTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTATTA
Found at i:85863548 original size:177 final size:177
Alignment explanation
Indices: 85863055--85863809 Score: 902
Period size: 177 Copynumber: 4.3 Consensus size: 177
85863045 CTGATGACTT
* * * ** * *
85863055 AAATTTGCTCCATTGCCAATATATGGAGATAAGATTCGCCATCCTCAATCTGCTCTGCAACTACT
1 AAATCTGCTCCATTGCCAATACATGGAGATAAGATTCGCCATCTTTGATCTGCTCCGCTACTAC-
* * * *
85863120 TTAGGGAAAT-AGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCGGGAAGATAAAACTAAAA
65 TTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGAAAGATAAGACTAAAA
* *
85863184 TCGTTACCCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGG-TA
130 TCGCTAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTA
* * * * * *
85863231 AAATCTACTCCA--GCCGATACATGGAGATAAGATTCACCATCTTCGATCTGCTCCGCTGCAACT
1 AAATCTGCTCCATTGCCAATACATGGAGATAAGATTCGCCATCTTTGATCTGCTCCGCTACTACT
* * *
85863294 TCAGGGAGATAAGATCTTCAATTTTTC-GTCTGCTTTCTTGCTACC-CTAGAAAGATAAGACT-C
66 T-AGGGAGATAAGATCTTCAA-TCTTCAGTCTGCTTCCTTGCTACCTC-AGAAAGATAAGACTAA
* * *
85863356 ATTC-TTCAACCTGCTCTCTTGCTACCTCAGAGGGATAAGGCTAGTGGCTA
128 AATCGCT-AACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTA
* * * * *
85863406 AAATCTGCTCCATTGCAAATACATGGAGATAAGTTTTGCCATCTTTGATCTGCTCTGCTACTGCT
1 AAATCTGCTCCATTGCCAATACATGGAGATAAGATTCGCCATCTTTGATCTGCTCCGCTACTACT
* * *
85863471 TAGAGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTCCTACCTCAGGAAGATAAGACTAAAAT
66 TAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGAAAGATAAGACTAAAAT
*
85863536 CGCTAGCCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTA
131 CGCTAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTA
* * * *
85863583 AAATCTGCTCCATTGCCAGTACATGGAGATAAGATTCGCCATCTTTGATCTACTCCGTTACTATT
1 AAATCTGCTCCATTGCCAATACATGGAGATAAGATTCGCCATCTTTGATCTGCTCCGCTACTACT
* * * * * * *
85863648 TAGGGAGATAAGATCTTCAATCTTCAATCTGCTTTCATGTTACCTCAGAAAGATAAGAATCAATT
66 TAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGAAAGATAAGACTAAAAT
** * * *
85863713 TTC-AACTTGCTCTCTTGCTACCTCAGAAAGATAAGGCTTAG-GGCTT
131 CGCTAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGC-TAGTGGCTA
* *
85863759 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTTGCC-TCTTTCGATCT
1 AAATCTGCTCCATTGCCAATACATGGAGATAAGATTCGCCATCTTT-GATCT
85863810 TCAATCTTCA
Statistics
Matches: 495, Mismatches: 70, Indels: 28
0.83 0.12 0.05
Matches are distributed among these distances:
173 4 0.01
174 90 0.18
175 60 0.12
176 138 0.28
177 202 0.41
178 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.31
Consensus pattern (177 bp):
AAATCTGCTCCATTGCCAATACATGGAGATAAGATTCGCCATCTTTGATCTGCTCCGCTACTACT
TAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGAAAGATAAGACTAAAAT
CGCTAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTA
Found at i:85863717 original size:43 final size:43
Alignment explanation
Indices: 85863664--85863747 Score: 116
Period size: 43 Copynumber: 2.0 Consensus size: 43
85863654 GATAAGATCT
* *
85863664 TCAATCTTCAA-TCTGCTTTCATGTTACCTCAGAAAGATAAGAA
1 TCAATCTTCAACT-TGCTCTCATGCTACCTCAGAAAGATAAGAA
* *
85863707 TCAATTTTCAACTTGCTCTCTTGCTACCTCAGAAAGATAAG
1 TCAATCTTCAACTTGCTCTCATGCTACCTCAGAAAGATAAG
85863748 GCTTAGGGCT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
43 35 0.97
44 1 0.03
ACGTcount: A:0.32, C:0.23, G:0.12, T:0.33
Consensus pattern (43 bp):
TCAATCTTCAACTTGCTCTCATGCTACCTCAGAAAGATAAGAA
Found at i:85864081 original size:64 final size:64
Alignment explanation
Indices: 85863977--85864198 Score: 300
Period size: 64 Copynumber: 3.5 Consensus size: 64
85863967 ACCGTCATCA
85863977 AAATGAATCAAATACTCCTAACTAGATGTGATGCTGATGTCAAATAATTAGGACGCTATGATCG
1 AAATGAATCAAATACTCCTAACTAGATGTGATGCTGATGTCAAATAATTAGGACGCTATGATCG
* * * * * * *
85864041 AAATGAGTCAAATGCTCCTAACTAGATGTGACGCTTATGTCAAATAATTAGGATGATATGATCA
1 AAATGAATCAAATACTCCTAACTAGATGTGATGCTGATGTCAAATAATTAGGACGCTATGATCG
* * ** * * *
85864105 AAATGAATCAAAAACCCCTAACTAGATACGATGCTGATTTCAAATAGTTAGGACGCTATGATTG
1 AAATGAATCAAATACTCCTAACTAGATGTGATGCTGATGTCAAATAATTAGGACGCTATGATCG
* *
85864169 AAATGAGTCAAATGCTCCTAACTAGATGTG
1 AAATGAATCAAATACTCCTAACTAGATGTG
85864199 TTATGAATGA
Statistics
Matches: 131, Mismatches: 27, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
64 131 1.00
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (64 bp):
AAATGAATCAAATACTCCTAACTAGATGTGATGCTGATGTCAAATAATTAGGACGCTATGATCG
Found at i:85867949 original size:19 final size:19
Alignment explanation
Indices: 85867925--85868013 Score: 139
Period size: 19 Copynumber: 4.8 Consensus size: 19
85867915 TCATATCTTT
*
85867925 TAAGATTGTATATCATATC
1 TAAGATTGCATATCATATC
85867944 TAAGATTGCA-ATCATATC
1 TAAGATTGCATATCATATC
85867962 TAAGATTG--TATCATATC
1 TAAGATTGCATATCATATC
*
85867979 TAAGATTGCATATCACATC
1 TAAGATTGCATATCATATC
85867998 TAAGATTGCATATCAT
1 TAAGATTGCATATCAT
85868014 TGAACATTAT
Statistics
Matches: 64, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.25
18 16 0.25
19 32 0.50
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TAAGATTGCATATCATATC
Found at i:85867980 original size:35 final size:37
Alignment explanation
Indices: 85867925--85868013 Score: 137
Period size: 35 Copynumber: 2.4 Consensus size: 37
85867915 TCATATCTTT
*
85867925 TAAGATTGTATATCATATCTAAGATTGCA-ATCATATC
1 TAAGATTG-ATATCATATCTAAGATTGCATATCACATC
85867962 TAAGATTG-TATCATATCTAAGATTGCATATCACATC
1 TAAGATTGATATCATATCTAAGATTGCATATCACATC
85867998 TAAGATTGCATATCAT
1 TAAGATTG-ATATCAT
85868014 TGAACATTAT
Statistics
Matches: 48, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
35 19 0.40
36 15 0.31
37 8 0.17
38 6 0.12
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (37 bp):
TAAGATTGATATCATATCTAAGATTGCATATCACATC
Found at i:85867992 original size:14 final size:15
Alignment explanation
Indices: 85867937--85867992 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
85867927 AGATTGTATA
85867937 TCATATCTAAGATTG
1 TCATATCTAAGATTG
85867952 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
85867970 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
85867987 -CATATC
1 TCATATC
85867993 ACATCTAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:85868410 original size:45 final size:45
Alignment explanation
Indices: 85868355--85868678 Score: 240
Period size: 44 Copynumber: 7.4 Consensus size: 45
85868345 GGAAGGCGAT
* *
85868355 ATCTGCTATCTTTGATCTGCTCCCCGTCTATTACAGAGACACCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACACCAA
* * *
85868400 ATCTGTTATCTTCGATCTGCTTCCTGTCTAATACAGAGACACCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACACCAA
* * * * * * *
85868445 A--T-CT-TCTTAGATCTGCT-TCAG-CGTAA-ACACGTGAAAACTAT
1 ATCTGCTATCTTCGATCTGCTCCCCGTC-TAATACA-GAG-ACACCAA
* * * **
85868486 ATCTGCTATCTTCGATCTACTCCCTGAC-AATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACACCAA
* * * *
85868530 ATCTGCTATCTTTGATCTAC-CCTCTGAC-AATACAGAGACACCAA
1 ATCTGCTATCTTCGATCTGCTCC-CCGTCTAATACAGAGACACCAA
* * **
85868574 ATCTGCTATCTTCGATCTGCTCCCTGAC-AATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACACCAA
** * * **
85868618 ATCTGCTATCTTCGATCTGCTATCTGAC-AATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACACCAA
*
85868662 ATCTGCTATCTTAGATC
1 ATCTGCTATCTTCGATC
85868679 CGTTTCGATG
Statistics
Matches: 235, Mismatches: 32, Indels: 25
0.80 0.11 0.09
Matches are distributed among these distances:
39 4 0.02
40 7 0.03
41 17 0.07
42 1 0.00
43 4 0.02
44 138 0.59
45 58 0.25
46 5 0.02
47 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.30
Consensus pattern (45 bp):
ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACACCAA
Found at i:85868535 original size:44 final size:44
Alignment explanation
Indices: 85868486--85868678 Score: 298
Period size: 44 Copynumber: 4.4 Consensus size: 44
85868476 TGAAAACTAT
85868486 ATCTGCTATCTTCGATCTACTCCCTGACAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTACTCCCTGACAATACAGAGATGCCAA
* **
85868530 ATCTGCTATCTTTGATCTAC-CCTCTGACAATACAGAGACACCAA
1 ATCTGCTATCTTCGATCTACTCC-CTGACAATACAGAGATGCCAA
*
85868574 ATCTGCTATCTTCGATCTGCTCCCTGACAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTACTCCCTGACAATACAGAGATGCCAA
* **
85868618 ATCTGCTATCTTCGATCTGCTATCTGACAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTACTCCCTGACAATACAGAGATGCCAA
*
85868662 ATCTGCTATCTTAGATC
1 ATCTGCTATCTTCGATC
85868679 CGTTTCGATG
Statistics
Matches: 137, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
43 2 0.01
44 133 0.97
45 2 0.01
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTACTCCCTGACAATACAGAGATGCCAA
Found at i:85868782 original size:92 final size:90
Alignment explanation
Indices: 85868618--85868904 Score: 339
Period size: 92 Copynumber: 3.2 Consensus size: 90
85868608 GAGATGCCAA
* * * *
85868618 ATCTGCTA--TCTTCGATCTGCTATCTGAC-AATACAGAGATGCCAAATCTGCTATCTTAGATCC
1 ATCTGCTATGTCTTCGATCTGCTACCCGTCTAATACAGAGATGCCAAATCTTC-ATCTTAGATCC
* *
85868680 GTTTCGATGTAAACACATGAAGATCAG
65 GCTTCGATGTAAACAC-TGAAGGTCAG
* **
85868707 ATCTGCTATGTCTTCGATCTGCTACCCGTCTAATATAGAGATGCCAAATCTATCATCTTAGATTT
1 ATCTGCTATGTCTTCGATCTGCTACCCGTCTAATACAGAGATGCCAAATCT-TCATCTTAGATCC
*
85868772 GCTTCAATGTAAACACCTGAAGGTCAG
65 GCTTCGATGTAAACA-CTGAAGGTCAG
* * * * *
85868799 ATCTACTATGTTTTCGATCTTCT-CCTCGTCTCATACAGAGATGCCAAATCTGTCATCTTGGATC
1 ATCTGCTATGTCTTCGATCTGCTACC-CGTCTAATACAGAGATGCCAAATCT-TCATCTTAGATC
85868863 CGCTTCGATGTAAACATCTGAAGGTCAG
64 CGCTTCGATGTAAACA-CTGAAGGTCAG
*
85868891 ATCTGCTATATCTT
1 ATCTGCTATGTCTT
85868905 AGCCTATTAC
Statistics
Matches: 168, Mismatches: 24, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
89 8 0.05
91 19 0.11
92 139 0.83
93 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.33
Consensus pattern (90 bp):
ATCTGCTATGTCTTCGATCTGCTACCCGTCTAATACAGAGATGCCAAATCTTCATCTTAGATCCG
CTTCGATGTAAACACTGAAGGTCAG
Found at i:85869153 original size:84 final size:84
Alignment explanation
Indices: 85868889--85869445 Score: 810
Period size: 84 Copynumber: 6.6 Consensus size: 84
85868879 TCTGAAGGTC
* * * * **
85868889 AGATCTGCTATATCTTAGCCTATTACCCTACTGCTTAGGGAGTTAAGGCGAGTCTTCAATCCACT
1 AGATCTG-TA-ATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGATCTGCT
85868954 CCACTACTGCTTAGGGAGATA
64 CCACTACTGCTTAGGGAGATA
* *
85868975 AGATTTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCACATCGTCTTCGATCTGC
1 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGC-GA--GTCTTCGATCTGC
*
85869040 TCCGCTACTGCTTAGGGAGATA
63 TCCACTACTGCTTAGGGAGATA
* * * *
85869062 AGATCTGTAATTTTAGCCTGTTACCCTATTACTTAGGGGGTTAAGGCGGGCCTTCGATCTGCTCC
1 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGATCTGCTCC
*
85869127 ACTACTGCTTAGGGAGATG
66 ACTACTGCTTAGGGAGATA
*
85869146 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGAGGTTAAGGCGAGTCTTCGATCTGCTCC
1 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGATCTGCTCC
85869211 ACTACTGCTTAGGGAGATA
66 ACTACTGCTTAGGGAGATA
* * *
85869230 AGATCTGTAATTTTAGCCTGTTACCCTGCTGCTTACGGGGTTAAGGCGGGTCTTCGATCTGCTCC
1 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGATCTGCTCC
*
85869295 ACCACTGCTTAGGGAGATA
66 ACTACTGCTTAGGGAGATA
* * * *
85869314 AGATCTGCAATTTTAGCCTGTTACCCTACTACTTAAGGGGTTAAGGC-ACATCTTCGATCTGCTC
1 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGA-GTCTTCGATCTGCTC
85869378 CACTACTGCTTAGGGAGATA
65 CACTACTGCTTAGGGAGATA
* * * *
85869398 AGAACTGCAATTTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG
1 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCG
85869446 CTGAATTTTG
Statistics
Matches: 426, Mismatches: 40, Indels: 11
0.89 0.08 0.02
Matches are distributed among these distances:
84 342 0.80
85 3 0.01
86 6 0.01
87 75 0.18
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (84 bp):
AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGATCTGCTCC
ACTACTGCTTAGGGAGATA
Found at i:85870406 original size:7 final size:7
Alignment explanation
Indices: 85870394--85870447 Score: 58
Period size: 7 Copynumber: 7.6 Consensus size: 7
85870384 GGCCTCTCCA
85870394 TTTTTCT
1 TTTTTCT
85870401 TTTTTCT
1 TTTTTCT
85870408 TTTTTCT
1 TTTTTCT
85870415 CTTTTT-T
1 -TTTTTCT
85870422 CTTTTTCT
1 -TTTTTCT
85870430 TTTCTT-T
1 TTT-TTCT
*
85870437 TTTTCCT
1 TTTTTCT
85870444 TTTT
1 TTTT
85870448 ATTGAAATAG
Statistics
Matches: 42, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
6 1 0.02
7 33 0.79
8 8 0.19
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (7 bp):
TTTTTCT
Found at i:85870419 original size:16 final size:15
Alignment explanation
Indices: 85870394--85870447 Score: 62
Period size: 16 Copynumber: 3.7 Consensus size: 15
85870384 GGCCTCTCCA
85870394 TTTTTCTTTTTTCTT
1 TTTTTCTTTTTTCTT
85870409 TTTTCTCTTTTTTC--
1 TTTT-TCTTTTTTCTT
85870423 TTTTTC--TTTTCTT
1 TTTTTCTTTTTTCTT
85870436 TTTTTCCTTTTT
1 TTTTT-CTTTTT
85870448 ATTGAAATAG
Statistics
Matches: 33, Mismatches: 0, Indels: 11
0.75 0.00 0.25
Matches are distributed among these distances:
11 5 0.15
13 7 0.21
14 5 0.15
15 4 0.12
16 12 0.36
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTCTTTTTTCTT
Found at i:85870445 original size:27 final size:29
Alignment explanation
Indices: 85870394--85870447 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
85870384 GGCCTCTCCA
*
85870394 TTTTTCTTTTTTCTTTTTTCTCTTTTTTC
1 TTTTTCTTTTCTCTTTTTTCTCTTTTTTC
85870423 TTTTTCTTTTCT-TTTTTTC-CTTTTT
1 TTTTTCTTTTCTCTTTTTTCTCTTTTT
85870448 ATTGAAATAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 6 0.25
28 7 0.29
29 11 0.46
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (29 bp):
TTTTTCTTTTCTCTTTTTTCTCTTTTTTC
Found at i:85875590 original size:19 final size:19
Alignment explanation
Indices: 85875566--85875656 Score: 134
Period size: 19 Copynumber: 4.9 Consensus size: 19
85875556 AATCATATCT
*
85875566 TCTAAGTTTGCATATCATA
1 TCTAAGATTGCATATCATA
85875585 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
85875603 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
* *
85875620 TCTAAGATTGCTTATCACA
1 TCTAAGATTGCATATCATA
85875639 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
85875657 TGAAGATTAT
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
17 16 0.25
18 16 0.25
19 33 0.51
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:85875618 original size:35 final size:36
Alignment explanation
Indices: 85875578--85875648 Score: 117
Period size: 35 Copynumber: 2.0 Consensus size: 36
85875568 TAAGTTTGCA
*
85875578 TATCATATCTAAGATTGC-AATCATATCTAAGATTG
1 TATCATATCTAAGATTGCTAATCACATCTAAGATTG
*
85875613 TATCATATCTAAGATTGCTTATCACATCTAAGATTG
1 TATCATATCTAAGATTGCTAATCACATCTAAGATTG
85875649 CATATCATTG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
35 18 0.55
36 15 0.45
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.38
Consensus pattern (36 bp):
TATCATATCTAAGATTGCTAATCACATCTAAGATTG
Found at i:85878965 original size:40 final size:40
Alignment explanation
Indices: 85878921--85879032 Score: 140
Period size: 40 Copynumber: 2.8 Consensus size: 40
85878911 GATACTTGAG
*
85878921 GAAATGTTATCCGGGCTTAAAGACCCGCAGG-TTATATGCT
1 GAAATGTTATCCGGGCTTAAAGACCCGCAGGCTT-CATGCT
* *
85878961 GAAATGTTATCCGGGCTTAAAGACGCGCAGGCTTCGTGCT
1 GAAATGTTATCCGGGCTTAAAGACCCGCAGGCTTCATGCT
* *
85879001 -AGAATGTTATCCAGGC-TAGAGACCCGCAGGCT
1 GA-AATGTTATCCGGGCTTAAAGACCCGCAGGCT
85879033 ACGAGCTGGT
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
39 15 0.23
40 47 0.73
41 2 0.03
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
GAAATGTTATCCGGGCTTAAAGACCCGCAGGCTTCATGCT
Found at i:85881845 original size:17 final size:18
Alignment explanation
Indices: 85881832--85881991 Score: 104
Period size: 18 Copynumber: 8.9 Consensus size: 18
85881822 TAATCTTCAA
85881832 TGATATGCAATCTTAGATG
1 TGATATGCAATCTTAGA-G
85881851 TGATATGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* *
85881868 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
85881887 TGAT-TGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* * *
85881903 T-ATGATACAATCATAGATA
1 TGAT-ATGCAATCTTAGA-G
85881922 TGAT-TGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* *
85881938 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
*
85881957 TGAT-TGCAATCTTAGATA
1 TGATATGCAATCTTAGA-G
*
85881975 TGATATACAATCTTAGA
1 TGATATGCAATCTTAGA
85881992 AGATATGATT
Statistics
Matches: 117, Mismatches: 9, Indels: 30
0.75 0.06 0.19
Matches are distributed among these distances:
15 4 0.03
16 4 0.03
17 34 0.29
18 38 0.32
19 31 0.26
20 6 0.05
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (18 bp):
TGATATGCAATCTTAGAG
Found at i:85881901 original size:35 final size:35
Alignment explanation
Indices: 85881839--85881991 Score: 261
Period size: 35 Copynumber: 4.3 Consensus size: 35
85881829 CAATGATATG
*
85881839 CAATCTTAGATGTGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
85881875 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
*
85881910 CAATCATAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
85881945 CAATCTTAGATATGATTGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATTGCAATCTTAGATATG--ATA
85881982 CAATCTTAGA
1 CAATCTTAGA
85881992 AGATATGATT
Statistics
Matches: 112, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
35 84 0.75
36 15 0.13
37 13 0.12
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:85890265 original size:25 final size:24
Alignment explanation
Indices: 85890237--85890284 Score: 78
Period size: 25 Copynumber: 2.0 Consensus size: 24
85890227 TTATTAAGTC
85890237 GTACATATAATTTGTTGAAAATATT
1 GTACATATAATTTGTT-AAAATATT
*
85890262 GTACTTATAATTTGTTAAAATAT
1 GTACATATAATTTGTTAAAATAT
85890285 CATTAGGATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 7 0.32
25 15 0.68
ACGTcount: A:0.40, C:0.04, G:0.10, T:0.46
Consensus pattern (24 bp):
GTACATATAATTTGTTAAAATATT
Found at i:85894267 original size:40 final size:40
Alignment explanation
Indices: 85894223--85894445 Score: 269
Period size: 40 Copynumber: 5.6 Consensus size: 40
85894213 GCTACTCGTT
* *
85894223 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
85894263 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
85894303 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
85894343 CCAATGCCTTC-GG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
85894381 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
85894422 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
85894446 ACATCATTCG
Statistics
Matches: 160, Mismatches: 15, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
38 32 0.20
39 2 0.01
40 112 0.70
41 14 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:85894400 original size:118 final size:120
Alignment explanation
Indices: 85894225--85894446 Score: 292
Period size: 118 Copynumber: 1.9 Consensus size: 120
85894215 TACTCGTTCA
* *
85894225 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAT
*
85894290 ATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * * *
85894345 AATGCCTTC-GG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCACACAAATGCCTTCGGGA-CTTAGCCCGG
* * *
85894406 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
85894447 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
117 4 0.04
118 66 0.74
119 10 0.11
120 9 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:85902380 original size:40 final size:40
Alignment explanation
Indices: 85902336--85902559 Score: 278
Period size: 40 Copynumber: 5.6 Consensus size: 40
85902326 GCTACTCGTT
* *
85902336 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
85902376 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
85902416 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
85902456 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
85902495 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
85902536 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
85902560 ACATCATTCG
Statistics
Matches: 161, Mismatches: 15, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
38 2 0.01
39 30 0.19
40 115 0.71
41 14 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:85902514 original size:119 final size:120
Alignment explanation
Indices: 85902338--85902560 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
85902328 TACTCGTTCA
* *
85902338 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAT
*
85902403 ATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * * *
85902458 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCACACAAATGCCTTCGGGA-CTTAGCCCGG
* * *
85902520 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
85902561 CATCATTCGA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:85911701 original size:68 final size:69
Alignment explanation
Indices: 85911623--85911762 Score: 246
Period size: 70 Copynumber: 2.0 Consensus size: 69
85911613 ATTATGTTAG
* *
85911623 TTAAAATGTATTTTAAATATTTTT-TAAAAAAAGGATATTAATTGTTGTATTGTGCCAGTCGATA
1 TTAAAATGTATTTTAAATATTTTTAAAAAAAAAGGATATTAATTATTGTATTGTGCCAGTCGATA
85911687 CTAT
66 CTAT
85911691 TTAAAATGTATTTTAAATATTTTTCAAAAAAAAAGGATATTAATTATTGTATTGTGCCAGTCGAT
1 TTAAAATGTATTTTAAATATTTTT-AAAAAAAAAGGATATTAATTATTGTATTGTGCCAGTCGAT
85911756 ACTAT
65 ACTAT
85911761 TT
1 TT
85911763 GCATTGGCCC
Statistics
Matches: 68, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
68 24 0.35
70 44 0.65
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (69 bp):
TTAAAATGTATTTTAAATATTTTTAAAAAAAAAGGATATTAATTATTGTATTGTGCCAGTCGATA
CTAT
Done.