Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 267 of 290
Found at i:85913453 original size:40 final size:40
Alignment explanation
Indices: 85913398--85913526 Score: 186
Period size: 40 Copynumber: 3.2 Consensus size: 40
85913388 CATTTGGATA
* * **
85913398 AAAAACACCGCTATAGATCGAGCATTAGCGGCACTTTTTG
1 AAAAACGCCGCTATAGGTCGAGCATTAGCGGTGCTTTTTG
* *
85913438 AAAAACGCCGTTATAGGTCGAGCATTAGCGGTGCTTTTTA
1 AAAAACGCCGCTATAGGTCGAGCATTAGCGGTGCTTTTTG
* *
85913478 AAAAATGCCGCTATAGGTCGACCATTAGCGGTGCTTTTTG
1 AAAAACGCCGCTATAGGTCGAGCATTAGCGGTGCTTTTTG
85913518 AAAAACGCC
1 AAAAACGCC
85913527 ACAAAAAAAA
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 78 1.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.26
Consensus pattern (40 bp):
AAAAACGCCGCTATAGGTCGAGCATTAGCGGTGCTTTTTG
Found at i:85913651 original size:40 final size:40
Alignment explanation
Indices: 85913583--85913669 Score: 104
Period size: 40 Copynumber: 2.2 Consensus size: 40
85913573 CGGCGTTTTT
* * *
85913583 TGAAAAACACTGCTATAGATCTAGCATTAGTAGCGCTTTC
1 TGAAAAACACCGCTATAGATCTACCATTAATAGCGCTTTC
* * *
85913623 TGAAAAACACCGCTATAGGT-TGACCATTAATGGCGCTTTT
1 TGAAAAACACCGCTATAGATCT-ACCATTAATAGCGCTTTC
85913663 TGAAAAA
1 TGAAAAA
85913670 TGCCACAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
39 1 0.03
40 39 0.98
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.29
Consensus pattern (40 bp):
TGAAAAACACCGCTATAGATCTACCATTAATAGCGCTTTC
Found at i:85913734 original size:75 final size:75
Alignment explanation
Indices: 85913654--85913831 Score: 259
Period size: 74 Copynumber: 2.4 Consensus size: 75
85913644 GACCATTAAT
* * **
85913654 GGCGCTTTTTGAAAAATGCCACAAAAAAATTAAGCACGACGCCGTCGTTTTATGTTGAGCTTTAG
1 GGCGCTTTTTGAAAAATGCCGCAAAAAAATTAAGCAAGAAACCGTCGTTTTATGTTGAGCTTTAG
85913719 TGGCATTAGC
66 TGGCATTAGC
* *
85913729 GGCGCTTTTTGAAAAATGCCGC-AAAAAATTTAGTAAGAAACCGTCGTTTTATGTTGAGCTTTAG
1 GGCGCTTTTTGAAAAATGCCGCAAAAAAATTAAGCAAGAAACCGTCGTTTTATGTTGAGCTTTAG
*
85913793 TGGCATTAGT
66 TGGCATTAGC
* * *
85913803 GACGTTTTTTGAAAAACGCCGCAAAAAAA
1 GGCGCTTTTTGAAAAATGCCGCAAAAAAA
85913832 CATTTTATCT
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
74 65 0.71
75 27 0.29
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (75 bp):
GGCGCTTTTTGAAAAATGCCGCAAAAAAATTAAGCAAGAAACCGTCGTTTTATGTTGAGCTTTAG
TGGCATTAGC
Found at i:85914227 original size:7 final size:7
Alignment explanation
Indices: 85914217--85914247 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
85914207 AGATTAGGGA
85914217 TTATGGT
1 TTATGGT
85914224 TTATGGT
1 TTATGGT
85914231 TTATGGT
1 TTATGGT
85914238 TTATGGT
1 TTATGGT
85914245 TTA
1 TTA
85914248 AGGGTTGGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.16, C:0.00, G:0.26, T:0.58
Consensus pattern (7 bp):
TTATGGT
Found at i:85914259 original size:21 final size:21
Alignment explanation
Indices: 85914217--85914281 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 21
85914207 AGATTAGGGA
* * **
85914217 TTATGGTTTATGGTTTATGGT
1 TTATGGTTTAAGGGTTGGGGT
85914238 TTATGGTTTAAGGGTTGGGGT
1 TTATGGTTTAAGGGTTGGGGT
*
85914259 TTAAGGTTT-AGGTGTTGAGGGT
1 TTATGGTTTAAGG-GTTG-GGGT
85914281 T
1 T
85914282 AAGGGTTAGG
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
20 3 0.08
21 29 0.78
22 5 0.14
ACGTcount: A:0.15, C:0.00, G:0.37, T:0.48
Consensus pattern (21 bp):
TTATGGTTTAAGGGTTGGGGT
Found at i:85914283 original size:21 final size:20
Alignment explanation
Indices: 85914242--85914302 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 20
85914232 TATGGTTTAT
85914242 GGTTTAAGGGTTG-GGGTTTAA
1 GGTTT-AGGGTTGAGGG-TTAA
85914263 GGTTTAGGTGTTGAGGGTTAA
1 GGTTTAGG-GTTGAGGGTTAA
* *
85914284 GGGTTAGGGGTTTAGGGTT
1 GGTTTA-GGGTTGAGGGTT
85914303 TATGTTTTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
20 3 0.09
21 27 0.77
22 5 0.14
ACGTcount: A:0.16, C:0.00, G:0.46, T:0.38
Consensus pattern (20 bp):
GGTTTAGGGTTGAGGGTTAA
Found at i:85914944 original size:20 final size:18
Alignment explanation
Indices: 85914929--85914964 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
85914919 TATTTCTCTC
*
85914929 CCCCGATTCCCTTTTCTT
1 CCCCAATTCCCTTTTCTT
*
85914947 TCCCAATTCCCTTTTCTT
1 CCCCAATTCCCTTTTCTT
85914965 TGTCAGCCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.08, C:0.42, G:0.03, T:0.47
Consensus pattern (18 bp):
CCCCAATTCCCTTTTCTT
Found at i:85914995 original size:72 final size:73
Alignment explanation
Indices: 85914843--85914995 Score: 218
Period size: 72 Copynumber: 2.1 Consensus size: 73
85914833 AACGACGCCG
**
85914843 TTTTATTTCTCTCCCCCCAATTCCCTTTTCTTTCCTGATTCCCTTTTCTTTCTCAGCCATTCTCA
1 TTTTATTTCTCTCCCCCCAATTCCCTTTTCTTTCCCAATTCCCTTTTCTTTCTCAGCCATTCTCA
* *
85914908 GCCTCTAC
66 ACCTATAC
* * * *
85914916 TTCTATTTCTCT-CCCCCGATTCCCTTTTCTTTCCCAATTCCCTTTTCTTTGTCAGCCTTTCTCA
1 TTTTATTTCTCTCCCCCCAATTCCCTTTTCTTTCCCAATTCCCTTTTCTTTCTCAGCCATTCTCA
*
85914980 ACCTATTC
66 ACCTATAC
85914988 TTTTATTT
1 TTTTATTT
85914996 TATAGCCAAA
Statistics
Matches: 70, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
72 59 0.84
73 11 0.16
ACGTcount: A:0.11, C:0.36, G:0.04, T:0.49
Consensus pattern (73 bp):
TTTTATTTCTCTCCCCCCAATTCCCTTTTCTTTCCCAATTCCCTTTTCTTTCTCAGCCATTCTCA
ACCTATAC
Found at i:85917100 original size:21 final size:21
Alignment explanation
Indices: 85917074--85917113 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
85917064 CCTTTAAAAC
85917074 AGGGCAACAAGCCCGTGTGGA
1 AGGGCAACAAGCCCGTGTGGA
*
85917095 AGGGCAACATGCCCGTGTG
1 AGGGCAACAAGCCCGTGTG
85917114 ACTTTCTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.25, G:0.38, T:0.12
Consensus pattern (21 bp):
AGGGCAACAAGCCCGTGTGGA
Found at i:85918425 original size:47 final size:47
Alignment explanation
Indices: 85918179--85918432 Score: 229
Period size: 47 Copynumber: 5.4 Consensus size: 47
85918169 GGGGTAGGGT
* * *
85918179 GCCGATGCCATGTCCCAGACATGGTCTTACTCTGG--CTCATATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATGT--G
** * * * *
85918226 GTTGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATTTTGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA-TATGTG
* *
85918274 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAT-GTG
* * * * *
85918320 GTCGATG-CATGTCCCAGGCAT-GTCTTACACTAGCACTCATCT-TGG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATGT-G
85918365 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATGTG
85918414 GCCGATG-CATGTCCCAGAC
1 GCCGATGCCATGTCCCAGAC
85918433 TATCTTACTC
Statistics
Matches: 172, Mismatches: 23, Indels: 24
0.79 0.11 0.11
Matches are distributed among these distances:
45 4 0.02
46 58 0.34
47 71 0.41
48 30 0.17
49 5 0.03
50 4 0.02
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATGTG
Found at i:85918426 original size:94 final size:92
Alignment explanation
Indices: 85918176--85918432 Score: 285
Period size: 94 Copynumber: 2.8 Consensus size: 92
85918166 CATGGGGTAG
* * * *
85918176 GGTGCCGATGCCATGTCCCAGACATGGTCTTACTCTGG--CTCATATCTCAAGTTGATGCCATGT
1 GGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATGT--GGTCGATG-CATGT
85918239 CCCAGACATGGTCTTACACTGACTATCATTT
63 CCCAGACATGGTCTTACACTGACTATCA-TT
* * *
85918270 TGTAGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTCGAGGTCGATGCATGT
1 GGT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAT-GTGGTCGATGCATGT
*
85918332 CCCAGGCAT-GTCTTACACTAGCACTCATC-TT
63 CCCAGACATGGTCTTACACT-G-ACT-ATCATT
*
85918363 GGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCC
1 GGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATGTGGTCGATGCATGTCC
85918428 CAGAC
65 CAGAC
85918433 TATCTTACTC
Statistics
Matches: 138, Mismatches: 13, Indels: 24
0.79 0.07 0.14
Matches are distributed among these distances:
92 17 0.12
93 43 0.31
94 62 0.45
95 16 0.12
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.28
Consensus pattern (92 bp):
GGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATGTGGTCGATGCATGTCCC
AGACATGGTCTTACACTGACTATCATT
Found at i:85921729 original size:42 final size:41
Alignment explanation
Indices: 85921662--85921901 Score: 163
Period size: 42 Copynumber: 5.8 Consensus size: 41
85921652 TCATGTTCTT
* * *
85921662 TAGCGGTGTTTGTAAGAAAGCGCCGCTAAAGGTCTATTTTA
1 TAGCGGCGTTTGTGAGAAAGTGCCGCTAAAGGTCTATTTTA
* * *
85921703 TAGTGGTGTTTGTG-GCAAAAGTGCCGCTAAAGGTCTGTTTTA
1 TAGCGGCGTTTGTGAG--AAAGTGCCGCTAAAGGTCTATTTTA
*
85921745 TAGCGGCGTTTGTGAGAAA-TGCCGCTAAAGGTC-ATGTTCTT
1 TAGCGGCGTTTGTGAGAAAGTGCCGCTAAAGGTCTAT-TT-TA
* * * * *
85921786 TAGCAGCGTTTGTGGGAAAGCGCAGCTAAACGTC-ATGTCCTT-
1 TAGCGGCGTTTGTGAGAAAGTGCCGCTAAAGGTCTAT-T--TTA
** *
85921828 TAGCGGCGTTTGT-AGGAAAGCACCGCTAAAGGTC-ATGTTCTT
1 TAGCGGCGTTTGTGA-GAAAGTGCCGCTAAAGGTCTAT-TT-TA
* *
85921870 TAGTGTCGTTTGTG-GCAAAAGTGCCGCTAAAG
1 TAGCGGCGTTTGTGAG--AAAGTGCCGCTAAAG
85921902 ATTATGTTCT
Statistics
Matches: 163, Mismatches: 22, Indels: 26
0.77 0.10 0.12
Matches are distributed among these distances:
39 1 0.01
40 18 0.11
41 35 0.21
42 93 0.57
43 15 0.09
44 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (41 bp):
TAGCGGCGTTTGTGAGAAAGTGCCGCTAAAGGTCTATTTTA
Found at i:85921797 original size:83 final size:80
Alignment explanation
Indices: 85921646--85921901 Score: 259
Period size: 83 Copynumber: 3.1 Consensus size: 80
85921636 ATAATTTTTT
* * *
85921646 TAAAGGTCATGTTCTTTAGCGGTGTTTGTAAGAAAGCGCCGCTAAAGGTCTAT-TT-TATAGTGG
1 TAAAGGTCATGTT-TTTAGCGGCGTTTGT-AGAAA--GCCGCTAAAGGTC-ATGTTCTTTAG-AG
*
85921709 TGTTTGTGGCAAAAGTGCCGC
60 CGTTTGTGGCAAAAGTGCCGC
85921730 TAAAGGTC-TGTTTTATAGCGGCGTTTGTGAGAAATGCCGCTAAAGGTCATGTTCTTTAGCAGCG
1 TAAAGGTCATGTTTT-TAGCGGCGTTTGT-AGAAA-GCCGCTAAAGGTCATGTTCTTTAG-AGCG
* * *
85921794 TTTGTGG-GAAAGCGCAGC
62 TTTGTGGCAAAAGTGCCGC
* * *
85921812 TAAACGTCATGTCCTTTAGCGGCGTTTGTAGGAAAGCACCGCTAAAGGTCATGTTCTTTAGTGTC
1 TAAAGGTCATGT-TTTTAGCGGCGTTTGTA-GAAAG--CCGCTAAAGGTCATGTTCTTTAGAG-C
85921877 GTTTGTGGCAAAAGTGCCGC
61 GTTTGTGGCAAAAGTGCCGC
85921897 TAAAG
1 TAAAG
85921902 ATTATGTTCT
Statistics
Matches: 145, Mismatches: 17, Indels: 19
0.80 0.09 0.10
Matches are distributed among these distances:
81 2 0.01
82 34 0.23
83 55 0.38
84 42 0.29
85 12 0.08
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (80 bp):
TAAAGGTCATGTTTTTAGCGGCGTTTGTAGAAAGCCGCTAAAGGTCATGTTCTTTAGAGCGTTTG
TGGCAAAAGTGCCGC
Found at i:85922198 original size:116 final size:117
Alignment explanation
Indices: 85922010--85922244 Score: 310
Period size: 116 Copynumber: 2.0 Consensus size: 117
85922000 AGATAGTTTT
* ** *
85922010 AAGCGCCGTTATAGGCCCAAAAAAATACTGCTAAAAACCTATTTTCCTATAGTGAGGACTCTCAT
1 AAGCGCCGCTATAGGCCCAAAAAAATACCACTAAAAACCTATTTTCCTATAGTAAGGACTCTCAT
* **
85922075 TTATGTTCCAGACGAATTTTGTAGGTAATTTATTAGGAAAAATTCTGGATAC
66 TTATGTTCCAGACAAATTTTGTAACTAATTTATTAGGAAAAATTCTGGATAC
* * * * * *
85922127 AAGCGCTGCTATAGGCCCAAAAAAA-GCCACTAAAAACCTGTTTTGCTGTAGTAAGGATTCTCAT
1 AAGCGCCGCTATAGGCCCAAAAAAATACCACTAAAAACCTATTTTCCTATAGTAAGGACTCTCAT
* * * *
85922191 TTGTGTTCCAGTCAAATTTTGTAACTCATTTATTAGGAAAAATTTTGGATAC
66 TTATGTTCCAGACAAATTTTGTAACTAATTTATTAGGAAAAATTCTGGATAC
85922243 AA
1 AA
85922245 TTGACACTTG
Statistics
Matches: 101, Mismatches: 17, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
116 78 0.77
117 23 0.23
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (117 bp):
AAGCGCCGCTATAGGCCCAAAAAAATACCACTAAAAACCTATTTTCCTATAGTAAGGACTCTCAT
TTATGTTCCAGACAAATTTTGTAACTAATTTATTAGGAAAAATTCTGGATAC
Found at i:85931179 original size:15 final size:15
Alignment explanation
Indices: 85931159--85931194 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
85931149 TATTGACTGG
85931159 TTAGGTCTTAATTGA
1 TTAGGTCTTAATTGA
*
85931174 TTAGGTCTTGATTGA
1 TTAGGTCTTAATTGA
85931189 TTAGGT
1 TTAGGT
85931195 AACTGATCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.22, C:0.06, G:0.25, T:0.47
Consensus pattern (15 bp):
TTAGGTCTTAATTGA
Found at i:85931858 original size:19 final size:19
Alignment explanation
Indices: 85931834--85931871 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
85931824 GTATACATGA
85931834 CTCGTTACTTTGATGTAAG
1 CTCGTTACTTTGATGTAAG
85931853 CTCGTTACTTTGATGTAAG
1 CTCGTTACTTTGATGTAAG
85931872 TAAAAGCCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.16, G:0.21, T:0.42
Consensus pattern (19 bp):
CTCGTTACTTTGATGTAAG
Found at i:85932192 original size:21 final size:22
Alignment explanation
Indices: 85932159--85932208 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
85932149 TATCGTATGT
* *
85932159 TACAATACATAAACACTTAGTG
1 TACAATTCATAAACAATTAGTG
*
85932181 TA-AATTCATAAACAATTGGTG
1 TACAATTCATAAACAATTAGTG
85932202 TACAATT
1 TACAATT
85932209 TTTTTCAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 18 0.75
22 6 0.25
ACGTcount: A:0.44, C:0.14, G:0.10, T:0.32
Consensus pattern (22 bp):
TACAATTCATAAACAATTAGTG
Found at i:85935064 original size:28 final size:29
Alignment explanation
Indices: 85935033--85935092 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
85935023 GATTTTTAGT
* *
85935033 AAAAATGTCTATT-AGGGATTCAATTGTG
1 AAAAATGTATATTGAGGGATTCAAATGTG
* * *
85935061 AAAAGTGTATATTGAGGGGTTGAAATGTG
1 AAAAATGTATATTGAGGGATTCAAATGTG
85935090 AAA
1 AAA
85935093 TAAATGAAAG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 11 0.42
29 15 0.58
ACGTcount: A:0.38, C:0.03, G:0.27, T:0.32
Consensus pattern (29 bp):
AAAAATGTATATTGAGGGATTCAAATGTG
Found at i:85938895 original size:15 final size:15
Alignment explanation
Indices: 85938875--85938939 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
85938865 GTATCTTGGG
85938875 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
85938890 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
85938905 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
85938920 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
85938934 TTTCTT
1 TTTCTT
85938940 GTTATCTTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 12 0.28
15 27 0.63
16 4 0.09
ACGTcount: A:0.09, C:0.14, G:0.14, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:85938907 original size:30 final size:31
Alignment explanation
Indices: 85938871--85938939 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
85938861 TATCGTATCT
85938871 TGGGTTTCTT-TAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCT-TGGATTTCTTTATTC
85938901 TGGGTTT-TTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCTTGGATTTCTTTATTC
*
85938931 -GGTTTTCTT
1 TGGGTTTCTT
85938940 GTTATCTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 7 0.20
30 27 0.77
31 1 0.03
ACGTcount: A:0.09, C:0.13, G:0.17, T:0.61
Consensus pattern (31 bp):
TGGGTTTCTTCTATCTTGGATTTCTTTATTC
Found at i:85952841 original size:37 final size:37
Alignment explanation
Indices: 85952791--85952940 Score: 255
Period size: 37 Copynumber: 4.1 Consensus size: 37
85952781 CTTTAGCTCA
* *
85952791 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
85952828 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
* *
85952865 GACATAATCTTCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
85952902 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
85952939 GA
1 GA
85952941 ATATATTTCC
Statistics
Matches: 108, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 108 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:85953206 original size:47 final size:47
Alignment explanation
Indices: 85953145--85953329 Score: 289
Period size: 47 Copynumber: 3.9 Consensus size: 47
85953135 TACATATATT
* * * *
85953145 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
85953192 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
85953239 TCACATTGGCCATTTGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
**
85953286 TCACATTGGCCATTCGGCCTTATCACATATATGCACATTCACAT
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACAT
85953330 CACAATTATC
Statistics
Matches: 126, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 126 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:85953265 original size:22 final size:22
Alignment explanation
Indices: 85953238--85953313 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
85953228 GCTCACATTC
85953238 ATCACATTGGCCATTTGGCCTT
1 ATCACATTGGCCATTTGGCCTT
* ** *
85953260 ATCACATATATG-CATGTTCACATT
1 ATCACAT-T-GGCCAT-TTGGCCTT
*
85953284 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTTGGCCTT
85953307 ATCACAT
1 ATCACAT
85953314 ATATGCACAT
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 14 0.35
23 9 0.22
24 10 0.25
25 7 0.17
ACGTcount: A:0.25, C:0.28, G:0.13, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTTGGCCTT
Found at i:85968250 original size:19 final size:18
Alignment explanation
Indices: 85968207--85968250 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
85968197 AAAAAATAAA
85968207 ATTTAAA-TAAATTGAAT
1 ATTTAAATTAAATTGAAT
* *
85968224 ATTAAAATTAAATTCGAGT
1 ATTTAAATTAAATT-GAAT
85968243 ATTTAAAT
1 ATTTAAAT
85968251 GAGACAAATG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 6 0.27
18 6 0.27
19 10 0.45
ACGTcount: A:0.50, C:0.02, G:0.07, T:0.41
Consensus pattern (18 bp):
ATTTAAATTAAATTGAAT
Found at i:85968292 original size:18 final size:19
Alignment explanation
Indices: 85968271--85968307 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
85968261 AAATTTAAAT
85968271 ATTAAA-TTAAACATCAAA
1 ATTAAATTTAAACATCAAA
*
85968289 ATTAAATTTAAATATCAAA
1 ATTAAATTTAAACATCAAA
85968308 TAATATATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.32
Consensus pattern (19 bp):
ATTAAATTTAAACATCAAA
Found at i:85969536 original size:83 final size:82
Alignment explanation
Indices: 85969337--85969554 Score: 332
Period size: 81 Copynumber: 2.7 Consensus size: 82
85969327 AGATGCTCTT
* * *
85969337 GAGTAAAATGAGACAAATATATGGTAAGTATAAGAGTTAAACAATTGCCAGGTTGTTTATAAAAT
1 GAGTAAAATGAGACAAATATATGGTAAGTATAAGAGTTAAATAATTGTCAAGTTGTTTATAAAAT
85969402 CCTACACTGTTATTATA
66 CCTACACTGTTATTATA
* * *
85969419 -TGTAAAATGAGACAAATATATGGTAAGTATAAGAGTTTAATAATTGTCAAGTTGTTTATAAACT
1 GAGTAAAATGAGACAAATATATGGTAAGTATAAGAGTTAAATAATTGTCAAGTTGTTTATAAAAT
85969483 CCTACACTGTT-TTGATA
66 CCTACACTGTTATT-ATA
* *
85969500 CGAGTAAAATGAGACAAATATATGGTAAGTATAAGAGTTCAATAATTGTAAAGTT
1 -GAGTAAAATGAGACAAATATATGGTAAGTATAAGAGTTAAATAATTGTCAAGTT
85969555 TTTTTATCAA
Statistics
Matches: 124, Mismatches: 9, Indels: 5
0.90 0.07 0.04
Matches are distributed among these distances:
80 2 0.02
81 72 0.58
83 50 0.40
ACGTcount: A:0.41, C:0.08, G:0.17, T:0.33
Consensus pattern (82 bp):
GAGTAAAATGAGACAAATATATGGTAAGTATAAGAGTTAAATAATTGTCAAGTTGTTTATAAAAT
CCTACACTGTTATTATA
Found at i:85971941 original size:13 final size:13
Alignment explanation
Indices: 85971923--85971949 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
85971913 TACTTATGAG
85971923 AACAAAAATTTCT
1 AACAAAAATTTCT
85971936 AACAAAAATTTCT
1 AACAAAAATTTCT
85971949 A
1 A
85971950 TTTCAGCATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.30
Consensus pattern (13 bp):
AACAAAAATTTCT
Found at i:85975706 original size:5 final size:5
Alignment explanation
Indices: 85975698--85975722 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
85975688 TATTATATCG
85975698 AATCA AATCA AATCA AATCA AATCA
1 AATCA AATCA AATCA AATCA AATCA
85975723 TAGCATAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (5 bp):
AATCA
Found at i:85976294 original size:48 final size:48
Alignment explanation
Indices: 85976235--85976342 Score: 114
Period size: 49 Copynumber: 2.2 Consensus size: 48
85976225 AAAGCCAGCA
* * * *
85976235 CGTGTGGTCCACATGGCCTAC-CACACA-GCCTGCAAAG-TTTCACATGGT
1 CGTGTGCTCCACACGGCC-ACGC-CACAGGCCTGC-AAGCTTTCACACGGC
85976283 CGTGTGCTCCACACGGCCACGCCACATGGCCTGCAAGCTTTCACACGGC
1 CGTGTGCTCCACACGGCCACGCCACA-GGCCTGCAAGCTTTCACACGGC
*
85976332 CCTGTGCTCCA
1 CGTGTGCTCCA
85976343 TACAGCCAAG
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
47 6 0.12
48 20 0.39
49 25 0.49
ACGTcount: A:0.19, C:0.37, G:0.23, T:0.20
Consensus pattern (48 bp):
CGTGTGCTCCACACGGCCACGCCACAGGCCTGCAAGCTTTCACACGGC
Found at i:85988775 original size:26 final size:26
Alignment explanation
Indices: 85988737--85988844 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
85988727 TGAAATTCCA
85988737 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
85988763 ATCATGGAGCATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
85988789 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
85988815 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
85988841 ATCA
1 ATCA
85988845 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.35, C:0.27, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:85990950 original size:30 final size:30
Alignment explanation
Indices: 85990908--85990973 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
85990898 TGTAGTATAA
*
85990908 CATATCAGATCAAACCATAGCATATCATAT
1 CATATCAGATCAAACCATAGCATAACATAT
**
85990938 CATATC-GAATCAAATTATAGCATAACATAT
1 CATATCAG-ATCAAACCATAGCATAACATAT
85990968 CATATC
1 CATATC
85990974 CTACTCCCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
29 1 0.03
30 31 0.97
ACGTcount: A:0.44, C:0.21, G:0.06, T:0.29
Consensus pattern (30 bp):
CATATCAGATCAAACCATAGCATAACATAT
Found at i:85996252 original size:32 final size:32
Alignment explanation
Indices: 85996211--85996284 Score: 114
Period size: 32 Copynumber: 2.3 Consensus size: 32
85996201 CCTAGCACAC
*
85996211 GCCCATGTGGCCCACACT-ATCCAATTAACCCA
1 GCCCATGTGGCCCACA-TAACCCAATTAACCCA
85996243 GCCCATGTGGCCCACATAACCCAATTAACCCA
1 GCCCATGTGGCCCACATAACCCAATTAACCCA
*
85996275 ACCCATGTGG
1 GCCCATGTGG
85996285 GTCACACAGC
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
31 1 0.03
32 38 0.97
ACGTcount: A:0.28, C:0.39, G:0.15, T:0.18
Consensus pattern (32 bp):
GCCCATGTGGCCCACATAACCCAATTAACCCA
Found at i:85997720 original size:32 final size:33
Alignment explanation
Indices: 85997642--85997736 Score: 120
Period size: 33 Copynumber: 2.9 Consensus size: 33
85997632 TTTTGTTTTA
* * *
85997642 TGTTTACTATCCTAGCAAACTATCTATGTTCTG
1 TGTTTACTATCCCAACAGACTATCTATGTTCTG
*
85997675 TGTTTACTATCCCAACAGACTATCTTTGTTCTG
1 TGTTTACTATCCCAACAGACTATCTATGTTCTG
* * *
85997708 TG-TTACTGTCCCAACAGACTTTCTCTGTT
1 TGTTTACTATCCCAACAGACTATCTATGTT
85997737 GATTCCATAG
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
32 24 0.44
33 31 0.56
ACGTcount: A:0.21, C:0.24, G:0.13, T:0.42
Consensus pattern (33 bp):
TGTTTACTATCCCAACAGACTATCTATGTTCTG
Found at i:86003924 original size:57 final size:56
Alignment explanation
Indices: 86003855--86003996 Score: 187
Period size: 57 Copynumber: 2.5 Consensus size: 56
86003845 GCCATGAGGG
86003855 CGTCCTTTAACAGAGATAGCCACAAAGGAATCTATTTAACAGAGATAGCCACAAATGT
1 CGTCCTTTAACAGAGATAGCCACAAAGGAAT-TATTTAACAGAGATAGCCACAAAT-T
* * * *
86003913 -GTCCTTTAACAGAGATAGCCATAAAGGCATTCTTTAATAGAGATAGCCACAAATT
1 CGTCCTTTAACAGAGATAGCCACAAAGGAATTATTTAACAGAGATAGCCACAAATT
* * *
86003968 CATCCATTCAACAAAGATAGCCACAAAGG
1 CGTCC-TTTAACAGAGATAGCCACAAAGG
86003997 CTCACTTTTA
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
55 1 0.01
56 25 0.34
57 48 0.65
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.23
Consensus pattern (56 bp):
CGTCCTTTAACAGAGATAGCCACAAAGGAATTATTTAACAGAGATAGCCACAAATT
Found at i:86003929 original size:28 final size:28
Alignment explanation
Indices: 86003857--86003996 Score: 147
Period size: 28 Copynumber: 4.9 Consensus size: 28
86003847 CATGAGGGCG
*
86003857 TCCTTTAACAGAGATAGCCACAAAGGAA
1 TCCTTTAACAGAGATAGCCACAAAGGTA
* * *
86003885 TCTATTTAACAGAGATAGCCACAAATGTG
1 TC-CTTTAACAGAGATAGCCACAAAGGTA
* *
86003914 TCCTTTAACAGAGATAGCCATAAAGGCA
1 TCCTTTAACAGAGATAGCCACAAAGGTA
* * *
86003942 TTCTTTAATAGAGATAGCCACAAA-TTCA
1 TCCTTTAACAGAGATAGCCACAAAGGT-A
* *
86003970 TCCATTCAACAAAGATAGCCACAAAGG
1 TCC-TTTAACAGAGATAGCCACAAAGG
86003997 CTCACTTTTA
Statistics
Matches: 89, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
28 47 0.53
29 42 0.47
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.23
Consensus pattern (28 bp):
TCCTTTAACAGAGATAGCCACAAAGGTA
Found at i:86008592 original size:6 final size:6
Alignment explanation
Indices: 86008432--86008591 Score: 293
Period size: 6 Copynumber: 26.7 Consensus size: 6
86008422 ATATTTTCTC
86008432 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
*
86008480 ATATGT ATATGT ATATAT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
86008528 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
* *
86008576 ATATGT GTATAT ATAT
1 ATATGT ATATGT ATAT
86008592 AGCGAGGGAA
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 149 1.00
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (6 bp):
ATATGT
Found at i:86020997 original size:33 final size:33
Alignment explanation
Indices: 86020960--86021026 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
86020950 AAACAAAATG
*
86020960 ACATAGCTTGATTTTAGGACTAAAAGATGAAAA
1 ACATAGCTTGATTTTAAGACTAAAAGATGAAAA
86020993 ACATAGCTTGATTTTAAGACTAAAAGATGAAAA
1 ACATAGCTTGATTTTAAGACTAAAAGATGAAAA
86021026 A
1 A
86021027 TGTAGAAGAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.48, C:0.09, G:0.16, T:0.27
Consensus pattern (33 bp):
ACATAGCTTGATTTTAAGACTAAAAGATGAAAA
Found at i:86022559 original size:42 final size:42
Alignment explanation
Indices: 86022500--86022674 Score: 224
Period size: 42 Copynumber: 4.2 Consensus size: 42
86022490 AAGTAAACTA
* * *
86022500 GAAAAGTAAACAGACTTCTACACCTGGGTCTCTAAATGCAAT
1 GAAAAGTGAATAGACCTCTACACCTGGGTCTCTAAATGCAAT
* * *
86022542 GAAAAGTGAATAGACTTCTACACCTGGGTCTTTAGATGCAAT
1 GAAAAGTGAATAGACCTCTACACCTGGGTCTCTAAATGCAAT
* * *
86022584 GAAAAGTGAATGGACCTCTACACCTAGGTCTCTAGATGCAAT
1 GAAAAGTGAATAGACCTCTACACCTGGGTCTCTAAATGCAAT
* * * * *
86022626 GAAAAGAGAATGGACCTCTACACTTGGGTCTCTAAATTCAAC
1 GAAAAGTGAATAGACCTCTACACCTGGGTCTCTAAATGCAAT
86022668 GAAAAGT
1 GAAAAGT
86022675 AAATGGATCT
Statistics
Matches: 118, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 118 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (42 bp):
GAAAAGTGAATAGACCTCTACACCTGGGTCTCTAAATGCAAT
Found at i:86022646 original size:84 final size:84
Alignment explanation
Indices: 86022500--86022712 Score: 239
Period size: 84 Copynumber: 2.5 Consensus size: 84
86022490 AAGTAAACTA
** * * * *
86022500 GAAAAGTAAACAGACTTCTACACCTGGGTCTCTAAATGCAATGAAAAGTGAATAGACTTCTACAC
1 GAAAAGTAAATGGACCTCTACACCTAGGTCTCTAAATGCAATGAAAAGAGAATAGACCTCTACAC
* * *
86022565 CTGGGTCTTTAGATGCAAT
66 CTGGGTCTCTAAATGCAAC
* * *
86022584 GAAAAGTGAATGGACCTCTACACCTAGGTCTCTAGATGCAATGAAAAGAGAATGGACCTCTACAC
1 GAAAAGTAAATGGACCTCTACACCTAGGTCTCTAAATGCAATGAAAAGAGAATAGACCTCTACAC
* *
86022649 TTGGGTCTCTAAATTCAAC
66 CTGGGTCTCTAAATGCAAC
* * * * *
86022668 GAAAAGTAAATGGATCTCCATACGTAGG-CATCTAAATGAAATGAA
1 GAAAAGTAAATGGACCTCTACACCTAGGTC-TCTAAATGCAATGAA
86022713 TGTTTTCTTT
Statistics
Matches: 107, Mismatches: 21, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
83 1 0.01
84 106 0.99
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (84 bp):
GAAAAGTAAATGGACCTCTACACCTAGGTCTCTAAATGCAATGAAAAGAGAATAGACCTCTACAC
CTGGGTCTCTAAATGCAAC
Found at i:86023145 original size:21 final size:20
Alignment explanation
Indices: 86023119--86023164 Score: 67
Period size: 21 Copynumber: 2.3 Consensus size: 20
86023109 CTCTCTTTAT
86023119 TTTTTTGGTTTCTTTTTTGTC
1 TTTTTTGGTTTC-TTTTTGTC
*
86023140 TTTTTTGTTTTCTTTTTGT-
1 TTTTTTGGTTTCTTTTTGTC
86023159 TTTTTT
1 TTTTTT
86023165 TTTCATTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 6 0.25
20 7 0.29
21 11 0.46
ACGTcount: A:0.00, C:0.07, G:0.11, T:0.83
Consensus pattern (20 bp):
TTTTTTGGTTTCTTTTTGTC
Found at i:86023166 original size:21 final size:21
Alignment explanation
Indices: 86023118--86023165 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
86023108 TCTCTCTTTA
86023118 TTTTTTTGGTTTCTTTTTTGT
1 TTTTTTTGGTTTCTTTTTTGT
* *
86023139 CTTTTTTGTTTTC-TTTTTGT
1 TTTTTTTGGTTTCTTTTTTGT
86023159 TTTTTTT
1 TTTTTTT
86023166 TTCATTTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 13 0.54
21 11 0.46
ACGTcount: A:0.00, C:0.06, G:0.10, T:0.83
Consensus pattern (21 bp):
TTTTTTTGGTTTCTTTTTTGT
Found at i:86028777 original size:45 final size:45
Alignment explanation
Indices: 86028727--86028955 Score: 160
Period size: 45 Copynumber: 5.0 Consensus size: 45
86028717 AATTGACGGT
*
86028727 TAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGG
1 TAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGA
* * * * *
86028772 TAAGGAT-CTCGTGTAAGACTATGTCAAG--ATGGCATCGGCATTGA
1 TAAGGATAC-CATGTAAGACCATGTCAAGACATGGCATTGGTA-AGA
* * ** ** *
86028816 TTAAGGACT-CCATGCAAGACTACATCAAGATGTGGCATTGGCACTAATA
1 -TAAGGA-TACCATGTAAGACCATGTCAAGACATGGCATTGG---TAAGA
***
86028865 TAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGA
1 TAAGGATACCATGTAAGACCATGTCAAG-ACATGGCA-TTGGTAAGA
* * * * *
86028912 TAATGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAG
1 TAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
86028956 TTCTATAAGG
Statistics
Matches: 139, Mismatches: 33, Indels: 24
0.71 0.17 0.12
Matches are distributed among these distances:
43 10 0.07
44 2 0.01
45 52 0.37
46 9 0.06
47 35 0.25
48 19 0.14
49 7 0.05
50 5 0.04
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.25
Consensus pattern (45 bp):
TAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGA
Found at i:86029042 original size:55 final size:54
Alignment explanation
Indices: 86028916--86029109 Score: 250
Period size: 55 Copynumber: 3.6 Consensus size: 54
86028906 GTAAGATAAT
* * *
86028916 GATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAG
* * *
86028970 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC-AAG
* * *
86029026 G-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAG
*
86029078 GATACCACT-TAAGACCATGTCAAGACATGGCA
1 GATACCA-TGTAAGACCATGCCAAGACATGGCA
86029110 ATGGTAAGTT
Statistics
Matches: 123, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
52 4 0.03
53 32 0.26
54 40 0.33
55 43 0.35
56 4 0.03
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (54 bp):
GATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAG
Found at i:86029135 original size:108 final size:109
Alignment explanation
Indices: 86028921--86029131 Score: 302
Period size: 108 Copynumber: 2.0 Consensus size: 109
86028911 ATAATGATAT
*
86028921 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
* * * * *
86028986 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
66 ATGTCAAGACATGGCAATGATAAGTTACAAAAAGGAAAAGGTCC
* * *
86029030 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCACT-TAAGAC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCA-TGTAAGAC
*
86029093 CATGTCAAGACATGGCAATGGTAAGTT-CAAAAAGGAAAA
65 CATGTCAAGACATGGCAATGATAAGTTACAAAAAGGAAAA
86029132 AGGTNNNNNN
Statistics
Matches: 91, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
107 9 0.10
108 45 0.49
109 37 0.41
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
ATGTCAAGACATGGCAATGATAAGTTACAAAAAGGAAAAGGTCC
Found at i:86034525 original size:4 final size:4
Alignment explanation
Indices: 86034516--86034560 Score: 81
Period size: 4 Copynumber: 11.2 Consensus size: 4
86034506 GAACAAATAG
*
86034516 ATGA ATGA ATGA ATGA ATGA ATGA ACGA ATGA ATGA ATGA ATGA A
1 ATGA ATGA ATGA ATGA ATGA ATGA ATGA ATGA ATGA ATGA ATGA A
86034561 ATTAGGGCAC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 39 1.00
ACGTcount: A:0.51, C:0.02, G:0.24, T:0.22
Consensus pattern (4 bp):
ATGA
Found at i:86035439 original size:31 final size:31
Alignment explanation
Indices: 86035396--86035459 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
86035386 CCTTTTCATA
86035396 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
86035427 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
86035458 TT
1 TT
86035460 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:86035728 original size:23 final size:24
Alignment explanation
Indices: 86035652--86035795 Score: 213
Period size: 24 Copynumber: 6.0 Consensus size: 24
86035642 GCTTTATCAT
*
86035652 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
86035677 ATAACTGGGGCA-AAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
86035702 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
86035725 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
86035749 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
86035773 ATAACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
86035796 GCACTTCCTC
Statistics
Matches: 112, Mismatches: 2, Indels: 11
0.90 0.02 0.09
Matches are distributed among these distances:
23 24 0.21
24 57 0.51
25 25 0.22
26 6 0.05
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:86035867 original size:9 final size:9
Alignment explanation
Indices: 86035853--86035909 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
86035843 ATCTCGTGTG
86035853 CATATCATA
1 CATATCATA
*
86035862 CATATCATGTG
1 CATATCA--TA
86035873 CATATCATA
1 CATATCATA
* *
86035882 CATGTCATGTG
1 CATATCA--TA
86035893 CATATCATA
1 CATATCATA
86035902 CATATCAT
1 CATATCAT
86035910 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:86035872 original size:20 final size:20
Alignment explanation
Indices: 86035849--86035911 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
86035839 GAACATCTCG
86035849 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
86035869 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
86035889 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
86035909 TGT
1 TGT
86035912 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:86035976 original size:25 final size:25
Alignment explanation
Indices: 86035948--86035995 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
86035938 ATATATAAAC
* * *
86035948 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
86035973 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
86035996 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:86039777 original size:20 final size:20
Alignment explanation
Indices: 86039752--86039790 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
86039742 CAATCTCAGT
*
86039752 AAAAAA-GATAAATTCAAATG
1 AAAAAATGAGAAATT-AAATG
86039772 AAAAAATGAGAAATTAAAT
1 AAAAAATGAGAAATTAAAT
86039791 CATAAAGCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.67, C:0.03, G:0.10, T:0.21
Consensus pattern (20 bp):
AAAAAATGAGAAATTAAATG
Found at i:86044380 original size:6 final size:6
Alignment explanation
Indices: 86044369--86044409 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
86044359 AAGATAAAAG
86044369 ATAAAC ATAAAC ATAAAC ATAAAC ATAAAC ATAAAC ATAAA
1 ATAAAC ATAAAC ATAAAC ATAAAC ATAAAC ATAAAC ATAAA
86044410 AAAAATCAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.68, C:0.15, G:0.00, T:0.17
Consensus pattern (6 bp):
ATAAAC
Found at i:86050149 original size:68 final size:65
Alignment explanation
Indices: 86049935--86050142 Score: 192
Period size: 64 Copynumber: 3.2 Consensus size: 65
86049925 CATAATTTTG
* * * *
86049935 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTA-TCTCG
1 GCTCTCTTGT-CTACATGGTGTACACATAGTACCACCCATGAGACCTAGCTACA-TATATTCTCG
86049996 TA
64 TA
* * * * * * * *
86049998 GCTCTCTTGTCTACATAGTGTCCTTCACCTGGAACCACGCATGCGACCTAGCTACATATA-TCCC
1 GCTCTCTTGTCTACAT-G-GT-GTACACATAGTACCACCCATGAGACCTAGCTACATATATTCTC
86050062 GTA
63 GTA
*
86050065 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGAGACCTAGCTACATCATAATTTCTC
1 GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGAGACCTAGCTACAT-AT-A-TTCTC
86050130 GTA
63 GTA
86050133 GCTCTCTTGT
1 GCTCTCTTGT
86050143 ACACATGATG
Statistics
Matches: 116, Mismatches: 19, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 14 0.12
64 28 0.24
65 6 0.05
66 24 0.21
67 25 0.22
68 18 0.16
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.31
Consensus pattern (65 bp):
GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGAGACCTAGCTACATATATTCTCGTA
Found at i:86056721 original size:24 final size:25
Alignment explanation
Indices: 86056693--86056739 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
86056683 ATAAATATAA
86056693 AACATTAAA-ATA-AAGTGTATAATT
1 AACATTAAATATATAA-TGTATAATT
86056717 AACATTAAATATATAATGTATAA
1 AACATTAAATATATAATGTATAA
86056740 ATGCAAGTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 9 0.43
25 10 0.48
26 2 0.10
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.34
Consensus pattern (25 bp):
AACATTAAATATATAATGTATAATT
Found at i:86057243 original size:23 final size:23
Alignment explanation
Indices: 86057190--86057236 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
86057180 CGGTGGCTGG
*
86057190 AATTTTTTTTTATTTACAAAATCA
1 AATTTTTTTTTA-TTAAAAAATCA
86057214 AAGTTTTTTTTTA-TAAAAAATCA
1 AA-TTTTTTTTTATTAAAAAATCA
86057237 TTATTTTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 9 0.43
24 2 0.10
25 10 0.48
ACGTcount: A:0.40, C:0.06, G:0.02, T:0.51
Consensus pattern (23 bp):
AATTTTTTTTTATTAAAAAATCA
Found at i:86057703 original size:14 final size:14
Alignment explanation
Indices: 86057674--86057712 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
86057664 GCCTATGGCC
86057674 AAAAAA-AAAGATAA
1 AAAAAAGAAAGA-AA
86057688 AAGAAAAGAAAGAAA
1 AA-AAAAGAAAGAAA
86057703 AAAAAAGAAA
1 AAAAAAGAAA
86057713 TAGAATGCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 10 0.43
15 8 0.35
16 5 0.22
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.03
Consensus pattern (14 bp):
AAAAAAGAAAGAAA
Found at i:86057842 original size:3 final size:3
Alignment explanation
Indices: 86057834--86057899 Score: 105
Period size: 3 Copynumber: 22.0 Consensus size: 3
86057824 CTTATTTGTA
86057834 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
86057882 AGT GAT GAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT
86057900 TTGGGCCTTG
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:86058845 original size:8 final size:9
Alignment explanation
Indices: 86058813--86058865 Score: 54
Period size: 9 Copynumber: 5.7 Consensus size: 9
86058803 AGTTTATATT
86058813 TTTTAATAA
1 TTTTAATAA
*
86058822 TTTTAATGAT
1 TTTTAAT-AA
86058832 TTTTAA-AA
1 TTTTAATAA
86058840 TTTTAAAATAA
1 TTTT--AATAA
*
86058851 TTTTTATAA
1 TTTTAATAA
86058860 TTTTAA
1 TTTTAA
86058866 ATTTTAAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
8 5 0.14
9 16 0.44
10 9 0.25
11 6 0.17
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (9 bp):
TTTTAATAA
Found at i:86058849 original size:29 final size:27
Alignment explanation
Indices: 86058764--86058878 Score: 81
Period size: 29 Copynumber: 4.0 Consensus size: 27
86058754 CATGTCAGGA
*
86058764 TTTAATTAATTTTTAAAATTTAAAA-AAT
1 TTTAA-TAA-TTTTAAATTTTAAAATAAT
* * **
86058792 TTTAAAAATATAGTTTATATTTTTTAATAAT
1 TTT---AATA-ATTTTAAATTTTAAAATAAT
*
86058823 TTTAATGATTTTTAAAATTTTAAAATAAT
1 TTTAATAATTT-T-AAATTTTAAAATAAT
*
86058852 TTTTATAATTTTAAATTTTAAAA-AAT
1 TTTAATAATTTTAAATTTTAAAATAAT
86058878 T
1 T
86058879 AATTAAATGC
Statistics
Matches: 68, Mismatches: 12, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
26 4 0.06
27 14 0.21
28 8 0.12
29 21 0.31
30 12 0.18
31 9 0.13
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (27 bp):
TTTAATAATTTTAAATTTTAAAATAAT
Found at i:86061753 original size:10 final size:10
Alignment explanation
Indices: 86061738--86061767 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
86061728 CATGTGTTTT
86061738 AATTGTAATA
1 AATTGTAATA
86061748 AATTGTAATA
1 AATTGTAATA
86061758 AATTGATAAT
1 AATTG-TAAT
86061768 TTTATTATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 15 0.79
11 4 0.21
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (10 bp):
AATTGTAATA
Found at i:86065160 original size:30 final size:28
Alignment explanation
Indices: 86065126--86065189 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 28
86065116 AGATGATTGC
86065126 AAAT-TTTAAAAAATCTTTAAAAAATATAAT
1 AAATATTTAAAAAATC--TAAAAAATAT-AT
*
86065156 AAATTATTTAAAAAATCTAAAATATATAT
1 AAA-TATTTAAAAAATCTAAAAAATATAT
86065185 AAATA
1 AAATA
86065190 AAATATCGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
28 2 0.06
29 5 0.16
30 12 0.39
31 1 0.03
32 11 0.35
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (28 bp):
AAATATTTAAAAAATCTAAAAAATATAT
Found at i:86065166 original size:32 final size:29
Alignment explanation
Indices: 86065130--86065188 Score: 82
Period size: 32 Copynumber: 1.9 Consensus size: 29
86065120 GATTGCAAAT
86065130 TTTAAAAAATCTTTAAAAAATATAATAAATTA
1 TTTAAAAAATC--TAAAAAATAT-ATAAATTA
*
86065162 TTTAAAAAATCTAAAATATATATAAAT
1 TTTAAAAAATCTAAAAAATATATAAAT
86065189 AAAATATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 6 0.23
30 9 0.35
32 11 0.42
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.37
Consensus pattern (29 bp):
TTTAAAAAATCTAAAAAATATATAAATTA
Found at i:86067424 original size:17 final size:19
Alignment explanation
Indices: 86067402--86067436 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
86067392 GATATGATAC
86067402 TAAAAT-TAT-TAAAAAAT
1 TAAAATATATATAAAAAAT
86067419 TAAAATATATATAAAAAA
1 TAAAATATATATAAAAAA
86067437 AATAGGGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 3 0.19
19 7 0.44
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
TAAAATATATATAAAAAAT
Found at i:86067727 original size:22 final size:21
Alignment explanation
Indices: 86067692--86067767 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
86067682 AAAAGGTATC
* *
86067692 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
86067713 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
86067736 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
86067755 TGC-AATCATATCT
1 TACAAATCATATCT
86067768 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:86067784 original size:35 final size:37
Alignment explanation
Indices: 86067721--86067818 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
86067711 ATTACAAAAT
86067721 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
86067757 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
86067792 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
86067819 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:86067826 original size:17 final size:19
Alignment explanation
Indices: 86067728--86067818 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
86067718 AATCATATCT
86067728 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
86067747 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
86067765 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
86067782 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
86067801 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
86067819 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:86068221 original size:45 final size:45
Alignment explanation
Indices: 86068166--86068439 Score: 252
Period size: 45 Copynumber: 6.1 Consensus size: 45
86068156 GGAAGGCGAT
* * *
86068166 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATATAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* *
86068211 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCTAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * *
86068256 ATCTGCTT-T-TTCAATCTGCTTCCCATCTAATACAGAGATGTCAA
1 ATCTG-TTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* *
86068300 ATCTGTTATCTCCGATTTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * * * * * * *
86068345 ATCTATCATCTTGGATCTGCT--TCGATGTAA-ACACATGAAAGTCAG
1 ATCTGTTATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAA
* * *
86068390 ATCTACTATGTCTTCGATCTGCTTCCCGTCTAATACAGAGATGCCAA
1 ATCT-GT-TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
86068437 ATC
1 ATC
86068440 ATCTTGGATC
Statistics
Matches: 180, Mismatches: 38, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
43 8 0.04
44 40 0.22
45 99 0.55
46 3 0.02
47 19 0.11
48 5 0.03
49 6 0.03
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.32
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
Found at i:86068293 original size:89 final size:89
Alignment explanation
Indices: 86068180--86068348 Score: 266
Period size: 89 Copynumber: 1.9 Consensus size: 89
86068170 GCTATCTTTG
* * *
86068180 ATCTGCTCCCCGTCTAATATAGAGATGCCAAATCTGTTATCTTCGATCTGCTCCCCGTCTAATAC
1 ATCTGCTCCCCATCTAATACAGAGATGCCAAATCTGTTATCTCCGATCTGCTCCCCGTCTAATAC
*
86068245 AGAGACGCTAAATCTGCTTTTTCA
66 AGAGACGCCAAATCTGCTTTTTCA
* * *
86068269 ATCTGCTTCCCATCTAATACAGAGATGTCAAATCTGTTATCTCCGATTTGCTCCCCGTCTAATAC
1 ATCTGCTCCCCATCTAATACAGAGATGCCAAATCTGTTATCTCCGATCTGCTCCCCGTCTAATAC
*
86068334 AGAGATGCCAAATCT
66 AGAGACGCCAAATCT
86068349 ATCATCTTGG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
89 72 1.00
ACGTcount: A:0.26, C:0.28, G:0.14, T:0.32
Consensus pattern (89 bp):
ATCTGCTCCCCATCTAATACAGAGATGCCAAATCTGTTATCTCCGATCTGCTCCCCGTCTAATAC
AGAGACGCCAAATCTGCTTTTTCA
Found at i:86068517 original size:78 final size:78
Alignment explanation
Indices: 86068385--86068594 Score: 303
Period size: 78 Copynumber: 2.7 Consensus size: 78
86068375 ACACATGAAA
* * * *
86068385 GTCAGATCTACTATGTCTTCGATCTGCTTCCCGTCTAATACAGAGATGCCAAATCATCTTGGATC
1 GTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAAATGCCAAATCATATTGGATC
86068450 TGCTTCAATAAAG
66 TGCTTCAATAAAG
* * *
86068463 GTTAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAAATGTCAAATCATATTGGATC
1 GTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAAATGCCAAATCATATTGGATC
*
86068528 TGCTTCAATGAAG
66 TGCTTCAATAAAG
* * ** *
86068541 GTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAAT
1 GTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAAATGCCAAAT
86068595 TTGTTTCTTC
Statistics
Matches: 116, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
78 116 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (78 bp):
GTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAAATGCCAAATCATATTGGATC
TGCTTCAATAAAG
Found at i:86068906 original size:45 final size:44
Alignment explanation
Indices: 86068786--86068911 Score: 137
Period size: 44 Copynumber: 2.8 Consensus size: 44
86068776 TCTTCGATCT
** * *
86068786 GCTCTCCGTCGAATATGGAGATGCCAAATCTGTT-TCTTCGATTT
1 GCTCTCCGTC-AATACAGAGATGCCAAATCTGTTATCTCCGATTC
* * **
86068830 GTTCTCCGACAATACAGAGATGTTAAATCTGTTATCTCCGATTC
1 GCTCTCCGTCAATACAGAGATGCCAAATCTGTTATCTCCGATTC
* *
86068874 GCTCTCCGTCTAATACAGAGATGCCAATTCTGTCATCT
1 GCTCTCCGTC-AATACAGAGATGCCAAATCTGTTATCT
86068912 TGGATCTACT
Statistics
Matches: 66, Mismatches: 14, Indels: 3
0.80 0.17 0.04
Matches are distributed among these distances:
43 19 0.29
44 24 0.36
45 23 0.35
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (44 bp):
GCTCTCCGTCAATACAGAGATGCCAAATCTGTTATCTCCGATTC
Found at i:86069146 original size:78 final size:78
Alignment explanation
Indices: 86068935--86069151 Score: 321
Period size: 78 Copynumber: 2.8 Consensus size: 78
86068925 ATGTAAACAC
* * *
86068935 ATGAAGGTCAGATCTGCTATGCCTTCGATCTCCTCCCCATCTAATATAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATCT
86069000 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * *
86069013 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGATATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATC
86069077 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * *
86069091 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCTGT-TGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCT-AATATAGAGATGCCAAATC
86069152 TGTTTCTTCG
Statistics
Matches: 124, Mismatches: 12, Indels: 6
0.87 0.08 0.04
Matches are distributed among these distances:
77 3 0.02
78 119 0.96
79 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:86069336 original size:556 final size:556
Alignment explanation
Indices: 86068219--86069414 Score: 1950
Period size: 556 Copynumber: 2.1 Consensus size: 556
86068209 AAATCTGTTA
* * ** * * * *
86068219 TCTTCGATCTGCTCCCCGTCTAATACAGAGACGCTAAATCTGCTTT-TTCAATCTGCTTC-CC-A
1 TCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTG-TTTCTTCGATTTG-TTCTCCGA
* *
86068281 TCTAATACAGAGATGTCAAATCTGTTATCTCCGATTTGCTCCCCGTCTAATACAGAGATGCCAAA
64 -C-AATACAGAGATGTTAAATCTGTTATCTCCGATTCGCTCCCCGTCTAATACAGAGATGCCAAA
* * *
86068346 TCTATCATCTTGGATCTGCTTCGATGTAAACACATGAAAGTCAGATCTACTATGTCTTCGATCTG
127 TCTATCATCTTGGATCTACTTCGATGTAAACACATGAAAGTCAGATCTACTATGCCTTCGATCTC
* * * *
86068411 CTTCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATAAAGGTTAGATCTGCTG
192 CTCCCCATCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATAAAGGTCAGATCTGCTA
*
86068476 TGTCTTCGATCTGCTCCCCGTCTAATACAGAAATGTCAAATCATATTGGATCTGCTTCAATGAAG
257 TGTCTTCGATCTGCTCCCCGTCTAATACAGAAATGCCAAATCATATTGGATCTGCTTCAATGAAG
*
86068541 GTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATTTGTTTCTTCG
322 GTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCG
*
86068606 ATTTGTTCTCTAACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAA
387 ATTTGTTCTCTAACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAACGTAAACACGTGAA
86068671 AGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTGGATC
452 AGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTGGATC
*
86068736 TACTTCGATGTGAAGACATCCGAAGGTTAGATCTACTATG
517 TACTTCGATATGAAGACATCCGAAGGTTAGATCTACTATG
86068776 TCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCCGACA
1 TCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCCGACA
* * *
86068841 ATACAGAGATGTTAAATCTGTTATCTCCGATTCGCTCTCCGTCTAATACAGAGATGCCAATTCTG
66 ATACAGAGATGTTAAATCTGTTATCTCCGATTCGCTCCCCGTCTAATACAGAGATGCCAAATCTA
* *
86068906 TCATCTTGGATCTACTTCGATGTAAACACATGAAGGTCAGATCTGCTATGCCTTCGATCTCCTCC
131 TCATCTTGGATCTACTTCGATGTAAACACATGAAAGTCAGATCTACTATGCCTTCGATCTCCTCC
* * *
86068971 CCATCTAATATAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCCA-ATCTGTTATGT
196 CCATCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATAAAGGT-CAGATCTGCTATGT
* *
86069035 CTTCGATCTGCTCCCCGTCTAATACAGATATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTC
260 CTTCGATCTGCTCCCCGTCTAATACAGAAATGCCAAATCATATTGGATCTGCTTCAATGAAGGTC
* **
86069100 AGATCTGCTATGTCTTCGATCTGCTCTCTGTTGAATATGGAGATGCCAAATCTGTTTCTTCGATT
325 AGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCGATT
* * *
86069165 TGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAATACGTGAAAGC
390 TGTTCTCTAACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAACGTAAACACGTGAAAGC
86069230 CAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTGGATCTAC
455 CAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTGGATCTAC
*
86069295 TTCGATATGAAGACATCCGAAGGTTAGATCTGCTATG
520 TTCGATATGAAGACATCCGAAGGTTAGATCTACTATG
* * *
86069332 TCTTCGATCTGCTCTCCATCGAATATGGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACA
1 TCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCCGACA
86069397 ATACAGAGATGTTAAATC
66 ATACAGAGATGTTAAATC
86069415 ATCTTGGATT
Statistics
Matches: 594, Mismatches: 41, Indels: 9
0.92 0.06 0.01
Matches are distributed among these distances:
556 546 0.92
557 47 0.08
558 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.33
Consensus pattern (556 bp):
TCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCCGACA
ATACAGAGATGTTAAATCTGTTATCTCCGATTCGCTCCCCGTCTAATACAGAGATGCCAAATCTA
TCATCTTGGATCTACTTCGATGTAAACACATGAAAGTCAGATCTACTATGCCTTCGATCTCCTCC
CCATCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATAAAGGTCAGATCTGCTATGTC
TTCGATCTGCTCCCCGTCTAATACAGAAATGCCAAATCATATTGGATCTGCTTCAATGAAGGTCA
GATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCGATTT
GTTCTCTAACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAACGTAAACACGTGAAAGCC
AAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTGGATCTACT
TCGATATGAAGACATCCGAAGGTTAGATCTACTATG
Found at i:86077687 original size:22 final size:21
Alignment explanation
Indices: 86077652--86077746 Score: 74
Period size: 18 Copynumber: 4.7 Consensus size: 21
86077642 AAAAGGTATC
* *
86077652 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
86077673 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
86077696 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
86077715 TGC-AATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
86077733 TGCATATCATATCT
1 TACAAATCATATCT
86077747 AAGATTGCAT
Statistics
Matches: 63, Mismatches: 6, Indels: 10
0.80 0.08 0.13
Matches are distributed among these distances:
18 17 0.27
19 17 0.27
21 4 0.06
22 15 0.24
23 10 0.16
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:86077695 original size:23 final size:22
Alignment explanation
Indices: 86077652--86077709 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
86077642 AAAAGGTATC
* *
86077652 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
86077673 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
86077696 TGCATATCATATCT
1 TACAAATCATATCT
86077710 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:86077712 original size:19 final size:19
Alignment explanation
Indices: 86077688--86077761 Score: 141
Period size: 19 Copynumber: 3.9 Consensus size: 19
86077678 AATCATATCT
86077688 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
86077707 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
86077725 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
86077744 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
86077762 TGAAGATTAT
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
18 18 0.33
19 36 0.67
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:86077734 original size:37 final size:38
Alignment explanation
Indices: 86077681--86077761 Score: 141
Period size: 37 Copynumber: 2.2 Consensus size: 38
86077671 ATTACAAAAT
86077681 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
86077717 CA-ATCATATCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
86077754 CATATCAT
1 CATATCAT
86077762 TGAAGATTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
35 3 0.07
36 3 0.07
37 31 0.74
38 5 0.12
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37
Consensus pattern (38 bp):
CATATCATATCTAAGATTGCATATCATATCTAAGATTG
Found at i:86077781 original size:37 final size:37
Alignment explanation
Indices: 86077691--86077770 Score: 110
Period size: 37 Copynumber: 2.2 Consensus size: 37
86077681 CATATCTTCT
* *
86077691 AAGATTGCATATCATATCTAAGATTGCAATCATATCT
1 AAGATTACATATCATATCTAAGATTGCAATCATATCG
*
86077728 AAGATTGCATATCATATCTAAGATTGCATATCAT-T-G
1 AAGATTACATATCATATCTAAGATTGCA-ATCATATCG
86077764 AAGATTA
1 AAGATTA
86077771 TATTTCCATA
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
36 6 0.15
37 29 0.73
38 5 0.12
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (37 bp):
AAGATTACATATCATATCTAAGATTGCAATCATATCG
Found at i:86078262 original size:24 final size:24
Alignment explanation
Indices: 86078233--86078301 Score: 95
Period size: 24 Copynumber: 2.9 Consensus size: 24
86078223 ACAAAGATTT
86078233 TTATGCTAATAAATG-TCAAATATA
1 TTATGCTAATAAATGCT-AAATATA
*
86078257 TTATGCTAATAGATGCTAAATATA
1 TTATGCTAATAAATGCTAAATATA
* *
86078281 TTATACTAATAAATACTAAAT
1 TTATGCTAATAAATGCTAAAT
86078302 CTTATAGAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 39 0.98
25 1 0.03
ACGTcount: A:0.46, C:0.09, G:0.07, T:0.38
Consensus pattern (24 bp):
TTATGCTAATAAATGCTAAATATA
Found at i:86078610 original size:16 final size:16
Alignment explanation
Indices: 86078586--86078619 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
86078576 AAGTTCGCAC
86078586 TTATGTAGCTTGCATT
1 TTATGTAGCTTGCATT
*
86078602 TTATTTAGCTTGCATT
1 TTATGTAGCTTGCATT
86078618 TT
1 TT
86078620 GCACAACTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.15, T:0.56
Consensus pattern (16 bp):
TTATGTAGCTTGCATT
Found at i:86078667 original size:16 final size:16
Alignment explanation
Indices: 86078646--86078691 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
86078636 ATTCAACTTG
86078646 CAGCTTGCACTTTTCA
1 CAGCTTGCACTTTTCA
* *
86078662 CAGCTTGCACATTTCT
1 CAGCTTGCACTTTTCA
* *
86078678 CAACTCGCACTTTT
1 CAGCTTGCACTTTT
86078692 TCCGAGTTCG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.20, C:0.33, G:0.11, T:0.37
Consensus pattern (16 bp):
CAGCTTGCACTTTTCA
Found at i:86079049 original size:93 final size:93
Alignment explanation
Indices: 86078898--86079073 Score: 307
Period size: 93 Copynumber: 1.9 Consensus size: 93
86078888 TATATGTCCG
* *
86078898 ATGCTTTTAACACGAAGATCATCAAAATCTCCATCTTCATCTTTATCTTCAACTTCAGTCATCTT
1 ATGCTTTTAACACGAAGATCATCAAAACCTCCATCTTCATCTTTATCTTCAACTTCAGTAATCTT
86078963 CTCAACCAATTTTGACTTAGTATGTCTA
66 CTCAACCAATTTTGACTTAGTATGTCTA
* * *
86078991 ATGCTTTTAACAGGAAGATCATCAAAACCTTCATCTTCATTTTTATCTTCAACTTCAGTAATCTT
1 ATGCTTTTAACACGAAGATCATCAAAACCTCCATCTTCATCTTTATCTTCAACTTCAGTAATCTT
86079056 CTCAACCAATTTTGACTT
66 CTCAACCAATTTTGACTT
86079074 GCACACTTGA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 78 1.00
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (93 bp):
ATGCTTTTAACACGAAGATCATCAAAACCTCCATCTTCATCTTTATCTTCAACTTCAGTAATCTT
CTCAACCAATTTTGACTTAGTATGTCTA
Found at i:86089301 original size:21 final size:21
Alignment explanation
Indices: 86089275--86089322 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
86089265 TGGACAACAT
* * *
86089275 ACACGGGCGTGTGAAGTAGTC
1 ACACGGGCATATGAAGTAGCC
*
86089296 ACACGGGCATATGGAGTAGCC
1 ACACGGGCATATGAAGTAGCC
86089317 ACACGG
1 ACACGG
86089323 CTATGTCTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.27, C:0.23, G:0.35, T:0.15
Consensus pattern (21 bp):
ACACGGGCATATGAAGTAGCC
Found at i:86090281 original size:24 final size:24
Alignment explanation
Indices: 86090240--86090300 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
86090230 AAAGAAATAA
*
86090240 CAAATACTTTTATGCTAATAAATGT
1 CAAATA-TATTATGCTAATAAATGT
86090265 CAAATATATTATGCTAATAAATGT
1 CAAATATATTATGCTAATAAATGT
*
86090289 TAAATATATTAT
1 CAAATATATTAT
86090301 ATTGATAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
24 28 0.82
25 6 0.18
ACGTcount: A:0.44, C:0.08, G:0.07, T:0.41
Consensus pattern (24 bp):
CAAATATATTATGCTAATAAATGT
Found at i:86090308 original size:24 final size:24
Alignment explanation
Indices: 86090240--86090310 Score: 79
Period size: 24 Copynumber: 2.9 Consensus size: 24
86090230 AAAGAAATAA
* *
86090240 CAAATACTTTTATGCTAATAAATGT
1 CAAATA-TATTATACTAATAAATGT
*
86090265 CAAATATATTATGCTAATAAATGT
1 CAAATATATTATACTAATAAATGT
* * *
86090289 TAAATATATTATATTGATAAAT
1 CAAATATATTATACTAATAAAT
86090311 ACTAAATCTT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
24 35 0.85
25 6 0.15
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.41
Consensus pattern (24 bp):
CAAATATATTATACTAATAAATGT
Found at i:86090316 original size:24 final size:24
Alignment explanation
Indices: 86090249--86090317 Score: 59
Period size: 24 Copynumber: 2.9 Consensus size: 24
86090239 ACAAATACTT
* *
86090249 TTATGCTAATAAAT-GTCAAATATA
1 TTATACTAATAAATACT-AAATATA
* **
86090273 TTATGCTAATAAATGTTAAATATA
1 TTATACTAATAAATACTAAATATA
* *
86090297 TTATATTGATAAATACTAAAT
1 TTATACTAATAAATACTAAAT
86090318 CTTCTAGAGA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
24 37 0.97
25 1 0.03
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.41
Consensus pattern (24 bp):
TTATACTAATAAATACTAAATATA
Found at i:86090380 original size:30 final size:30
Alignment explanation
Indices: 86090331--86090393 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
86090321 CTAGAGAGAA
* *
86090331 AATATGTTTTGTTTAACTTGACTTGCAAGC
1 AATATATTTTATTTAACTTGACTTGCAAGC
* *
86090361 AATATATTTTATTTCACTTGTCTTGCAAGC
1 AATATATTTTATTTAACTTGACTTGCAAGC
86090391 AAT
1 AAT
86090394 CTCTTTAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.29, C:0.14, G:0.13, T:0.44
Consensus pattern (30 bp):
AATATATTTTATTTAACTTGACTTGCAAGC
Found at i:86092039 original size:21 final size:19
Alignment explanation
Indices: 86092013--86092054 Score: 57
Period size: 21 Copynumber: 2.1 Consensus size: 19
86092003 ATTTTCTTAC
*
86092013 CATCAACTTAACCAACACAAA
1 CATCAAATTAA-CAAC-CAAA
86092034 CATCAAATTAACAACCAAA
1 CATCAAATTAACAACCAAA
86092053 CA
1 CA
86092055 AAATACCATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 6 0.30
20 4 0.20
21 10 0.50
ACGTcount: A:0.55, C:0.31, G:0.00, T:0.14
Consensus pattern (19 bp):
CATCAAATTAACAACCAAA
Found at i:86099000 original size:3 final size:3
Alignment explanation
Indices: 86098992--86099018 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
86098982 CAACTCCAAA
86098992 CAT CAT CAT CAT CAT CAT CAT CAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT
86099019 GTCATACTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:86101657 original size:24 final size:24
Alignment explanation
Indices: 86101613--86101664 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
86101603 TTTCTAGAAG
* **
86101613 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGAATTTATTACCATAATAT
*
86101637 ATTTAGAATTTATTACCATAATTT
1 ATTTAGAATTTATTACCATAATAT
86101661 ATTT
1 ATTT
86101665 GACCTACGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.04, G:0.06, T:0.54
Consensus pattern (24 bp):
ATTTAGAATTTATTACCATAATAT
Found at i:86102007 original size:60 final size:60
Alignment explanation
Indices: 86101914--86102035 Score: 244
Period size: 60 Copynumber: 2.0 Consensus size: 60
86101904 AATTTTTGTG
86101914 TTCAATTTCTCAATTTCATTCGCTATTTTTACTTATTAGTTGCTTAATCGAGTTGATCCC
1 TTCAATTTCTCAATTTCATTCGCTATTTTTACTTATTAGTTGCTTAATCGAGTTGATCCC
86101974 TTCAATTTCTCAATTTCATTCGCTATTTTTACTTATTAGTTGCTTAATCGAGTTGATCCC
1 TTCAATTTCTCAATTTCATTCGCTATTTTTACTTATTAGTTGCTTAATCGAGTTGATCCC
86102034 TT
1 TT
86102036 TCAACATTTG
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 62 1.00
ACGTcount: A:0.21, C:0.20, G:0.10, T:0.49
Consensus pattern (60 bp):
TTCAATTTCTCAATTTCATTCGCTATTTTTACTTATTAGTTGCTTAATCGAGTTGATCCC
Found at i:86107196 original size:19 final size:17
Alignment explanation
Indices: 86107146--86107219 Score: 69
Period size: 18 Copynumber: 4.2 Consensus size: 17
86107136 TTATGATATA
*
86107146 TATATTTTATAAACTTTT
1 TATATTTT-TAAAATTTT
* *
86107164 TATAATTTT-GAATTTT
1 TATATTTTTAAAATTTT
*
86107180 TTTATTTCTTGAAAATTTT
1 TATATTT-TT-AAAATTTT
86107199 TATATTTTTAAAATTATT
1 TATATTTTTAAAATT-TT
86107217 TAT
1 TAT
86107220 TGACATATAT
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
16 10 0.22
17 9 0.20
18 14 0.31
19 12 0.27
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (17 bp):
TATATTTTTAAAATTTT
Found at i:86107198 original size:18 final size:16
Alignment explanation
Indices: 86107148--86107220 Score: 56
Period size: 17 Copynumber: 4.2 Consensus size: 16
86107138 ATGATATATA
*
86107148 TATTTTATAAACTTTTT
1 TATTTT-TAAAATTTTT
* * *
86107165 ATAATTTTGAATTTTTT
1 -TATTTTTAAAATTTTT
86107182 TATTTCTTGAAAATTTTT
1 TATTT-TT-AAAATTTTT
*
86107200 ATATTTTTAAAATTATT
1 -TATTTTTAAAATTTTT
86107217 TATT
1 TATT
86107221 GACATATATA
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
16 8 0.18
17 18 0.40
18 14 0.31
19 5 0.11
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.63
Consensus pattern (16 bp):
TATTTTTAAAATTTTT
Found at i:86107927 original size:20 final size:20
Alignment explanation
Indices: 86107898--86107935 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
86107888 CAAAGGGGCG
*
86107898 TCAATTTTTTTAATGTATAC
1 TCAATCTTTTTAATGTATAC
*
86107918 TCAATCTTTTTCATGTAT
1 TCAATCTTTTTAATGTAT
86107936 TTGGAATATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.13, G:0.05, T:0.55
Consensus pattern (20 bp):
TCAATCTTTTTAATGTATAC
Found at i:86132881 original size:18 final size:18
Alignment explanation
Indices: 86132858--86132943 Score: 109
Period size: 18 Copynumber: 4.7 Consensus size: 18
86132848 GAACGATTAT
*
86132858 TTATTCAGTAACAATCAG
1 TTATTCAGTAACAATCAA
*
86132876 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAATCAA
* * *
86132894 TTATTCAATAATAATCAG
1 TTATTCAGTAACAATCAA
*
86132912 TTATTCAGTAACAATTAAA
1 TTATTCAGTAACAA-TCAA
86132931 TTATTCAGTAACA
1 TTATTCAGTAACA
86132944 GTCGATCTTT
Statistics
Matches: 57, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
18 42 0.74
19 15 0.26
ACGTcount: A:0.42, C:0.14, G:0.08, T:0.36
Consensus pattern (18 bp):
TTATTCAGTAACAATCAA
Found at i:86133140 original size:47 final size:47
Alignment explanation
Indices: 86133071--86133234 Score: 240
Period size: 47 Copynumber: 3.5 Consensus size: 47
86133061 CAGTAACAGT
* * *
86133071 AACAATAGCAATACGGTACACAGAGTACCTCATCGGAACAAATCCGG
1 AACAATAACAGTACGGTACACAGAGTACTTCATCGGAACAAATCCGG
*
86133118 AACAATAACAGTACGGTACACAGAGTACTTCATCAGAACAAATCCGG
1 AACAATAACAGTACGGTACACAGAGTACTTCATCGGAACAAATCCGG
* * *
86133165 AACAGTAACAGTACGGTACACATAGTACTTCATCGGAACAAATCCGA
1 AACAATAACAGTACGGTACACAGAGTACTTCATCGGAACAAATCCGG
*
86133212 AACAGTAACAGTAACGGTA-ACAG
1 AACAATAACAGT-ACGGTACACAG
86133235 TAACAATATC
Statistics
Matches: 107, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
47 101 0.94
48 6 0.06
ACGTcount: A:0.42, C:0.23, G:0.18, T:0.16
Consensus pattern (47 bp):
AACAATAACAGTACGGTACACAGAGTACTTCATCGGAACAAATCCGG
Found at i:86133282 original size:12 final size:12
Alignment explanation
Indices: 86133265--86133289 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
86133255 AGTTCCGAAT
86133265 CGGTAACAGTAA
1 CGGTAACAGTAA
86133277 CGGTAACAGTAA
1 CGGTAACAGTAA
86133289 C
1 C
86133290 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:86134116 original size:31 final size:32
Alignment explanation
Indices: 86134060--86134122 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
86134050 CACACTTGTC
*
86134060 ATAATTTAATATATTTATTACATAAAAATCTT
1 ATAATATAATATATTTATTACATAAAAATCTT
*
86134092 ATAATATAA-ATATTTAATTA-ATAAATATCTT
1 ATAATATAATATATTT-ATTACATAAAAATCTT
86134123 TTATAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 16 0.57
32 12 0.43
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (32 bp):
ATAATATAATATATTTATTACATAAAAATCTT
Found at i:86148235 original size:16 final size:16
Alignment explanation
Indices: 86148214--86148244 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
86148204 TATTTACCCC
86148214 AAAATTTTTTATTTTA
1 AAAATTTTTTATTTTA
86148230 AAAATTTTTTATTTT
1 AAAATTTTTTATTTT
86148245 CCCTAAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
AAAATTTTTTATTTTA
Found at i:86148855 original size:18 final size:17
Alignment explanation
Indices: 86148825--86148859 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
86148815 ATCTTGTTTC
86148825 CTTTTACATTTTTTTTT
1 CTTTTACATTTTTTTTT
*
86148842 CTTTTGCATGTTTTTTTT
1 CTTTTACAT-TTTTTTTT
86148860 TTCATTGCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.09, C:0.11, G:0.06, T:0.74
Consensus pattern (17 bp):
CTTTTACATTTTTTTTT
Found at i:86151368 original size:59 final size:59
Alignment explanation
Indices: 86151295--86151412 Score: 227
Period size: 59 Copynumber: 2.0 Consensus size: 59
86151285 TCGTTGGTGG
*
86151295 GGATTTTAACGCCATTATTAATGATGCTAAAAAGTTCGATGGGAGAAGGAAGCCTAGGT
1 GGATTTTAACGCCATTATTAATGATGCTAAAAAGTTCAATGGGAGAAGGAAGCCTAGGT
86151354 GGATTTTAACGCCATTATTAATGATGCTAAAAAGTTCAATGGGAGAAGGAAGCCTAGGT
1 GGATTTTAACGCCATTATTAATGATGCTAAAAAGTTCAATGGGAGAAGGAAGCCTAGGT
86151413 TGGCTAAGGA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.35, C:0.12, G:0.26, T:0.27
Consensus pattern (59 bp):
GGATTTTAACGCCATTATTAATGATGCTAAAAAGTTCAATGGGAGAAGGAAGCCTAGGT
Found at i:86152739 original size:15 final size:15
Alignment explanation
Indices: 86152719--86152751 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
86152709 GGTAAATACG
86152719 AAAAAAATTA-TTTT
1 AAAAAAATTATTTTT
86152733 AAAAAAATTATTTTT
1 AAAAAAATTATTTTT
86152748 AAAA
1 AAAA
86152752 TAGATGATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
AAAAAAATTATTTTT
Found at i:86153348 original size:27 final size:27
Alignment explanation
Indices: 86153317--86153400 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 27
86153307 CAGGTTGCGT
**
86153317 CTATCTGATTGGCGCGACTAGTTGAGC
1 CTATCTGACAGGCGCGACTAGTTGAGC
* * * *
86153344 CTATCTCAGAGGCGTGACTAGTTGAGT
1 CTATCTGACAGGCGCGACTAGTTGAGC
* * *
86153371 CTATTTGACAGGCGCGGCTAGTTGTGC
1 CTATCTGACAGGCGCGACTAGTTGAGC
86153398 CTA
1 CTA
86153401 ACTCAGACGC
Statistics
Matches: 45, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.30
Consensus pattern (27 bp):
CTATCTGACAGGCGCGACTAGTTGAGC
Found at i:86156932 original size:66 final size:66
Alignment explanation
Indices: 86156822--86156948 Score: 191
Period size: 66 Copynumber: 1.9 Consensus size: 66
86156812 TTGAGCCAAA
* * * * * *
86156822 AGGAGTGGAGTACGACGGTGGATACGGGCCGGGAGGAGTAGAGTACGGTGGTGGATACGGGCTGG
1 AGGAGTGGAGTACGACGGTGGATACAGACCGGGAGAAGTAGAGTACGATGATAGATACGGGCTGG
86156887 G
66 G
*
86156888 AGGAGTGGAGTACGACGGTGGATACAGACCGGGAGAAGTGGAGTACGATGATAGATACGGG
1 AGGAGTGGAGTACGACGGTGGATACAGACCGGGAGAAGTAGAGTACGATGATAGATACGGG
86156949 TCGAAAGGAG
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
66 54 1.00
ACGTcount: A:0.26, C:0.12, G:0.47, T:0.15
Consensus pattern (66 bp):
AGGAGTGGAGTACGACGGTGGATACAGACCGGGAGAAGTAGAGTACGATGATAGATACGGGCTGG
G
Found at i:86156945 original size:33 final size:33
Alignment explanation
Indices: 86156822--86156935 Score: 165
Period size: 33 Copynumber: 3.5 Consensus size: 33
86156812 TTGAGCCAAA
86156822 AGGAGTGGAGTACGACGGTGGATACGGGCCGGG
1 AGGAGTGGAGTACGACGGTGGATACGGGCCGGG
* ** *
86156855 AGGAGTAGAGTACGGTGGTGGATACGGGCTGGG
1 AGGAGTGGAGTACGACGGTGGATACGGGCCGGG
* *
86156888 AGGAGTGGAGTACGACGGTGGATACAGACCGGG
1 AGGAGTGGAGTACGACGGTGGATACGGGCCGGG
*
86156921 AGAAGTGGAGTACGA
1 AGGAGTGGAGTACGA
86156936 TGATAGATAC
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 70 1.00
ACGTcount: A:0.25, C:0.12, G:0.48, T:0.14
Consensus pattern (33 bp):
AGGAGTGGAGTACGACGGTGGATACGGGCCGGG
Found at i:86161251 original size:60 final size:60
Alignment explanation
Indices: 86161176--86161288 Score: 208
Period size: 60 Copynumber: 1.9 Consensus size: 60
86161166 TAAACACAAC
* *
86161176 AATTTATAACTTAATCCTAAATTACTAATAAATTAATTTTAAAATAATTATAATCATAAA
1 AATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTATAATCATAAA
86161236 AATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTATAA
1 AATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTATAA
86161289 AAAACAAAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
60 51 1.00
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (60 bp):
AATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTATAATCATAAA
Found at i:86161453 original size:3 final size:3
Alignment explanation
Indices: 86161447--86161536 Score: 109
Period size: 3 Copynumber: 31.0 Consensus size: 3
86161437 AATACATTAA
* *
86161447 CTT CTT CTT CTT -TT TTT CTTT CTT CTT CTT CTT CTT CTT CTT ATT
1 CTT CTT CTT CTT CTT CTT C-TT CTT CTT CTT CTT CTT CTT CTT CTT
86161492 CTT CTT CTT CTT CTT CTT CTT -TT CTT C-T CTT -TT CTCT CTT -TT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT-T CTT CTT
86161534 CTT
1 CTT
86161537 TCTCTCTTCC
Statistics
Matches: 77, Mismatches: 3, Indels: 14
0.82 0.03 0.15
Matches are distributed among these distances:
2 10 0.13
3 61 0.79
4 6 0.08
ACGTcount: A:0.01, C:0.29, G:0.00, T:0.70
Consensus pattern (3 bp):
CTT
Found at i:86163942 original size:16 final size:16
Alignment explanation
Indices: 86163921--86163988 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
86163911 TTTGGTTCGC
86163921 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
86163937 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
86163953 TGTAATGGATTAGAGG
1 TGTATTGGATTAGAGG
*
86163969 TGTATTGGATTTGAGG
1 TGTATTGGATTAGAGG
86163985 TGTA
1 TGTA
86163989 ATAGCAAATC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.25, C:0.00, G:0.37, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:86164241 original size:16 final size:16
Alignment explanation
Indices: 86164204--86164245 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
86164194 TTAATCATAT
*
86164204 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
86164220 TT-AAATATATTATAA
1 TTAAAATATATTATAA
86164235 TTAAAATATAT
1 TTAAAATATAT
86164246 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:86164252 original size:14 final size:15
Alignment explanation
Indices: 86164213--86164254 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
86164203 TTTAAACATA
*
86164213 ATTATTATTAAATAT
1 ATTATAATTAAATAT
86164228 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
86164242 A-TATAATTTAATA
1 ATTATAATTAAATA
86164255 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:86164352 original size:120 final size:120
Alignment explanation
Indices: 86164207--86164688 Score: 734
Period size: 120 Copynumber: 4.0 Consensus size: 120
86164197 ATCATATTTA
* *
86164207 AACATAATTATTATTAAATAT-ATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCA
1 AACATAATTATTATTAAATATAATT-TAATAAAAATATATAATTTAATAAAATTCTTAATAATAA
* * *
86164271 ATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
65 ATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAAATT
* ** * * *
86164327 AACATAATTATTATTAAATAT-ATTATAATTAAAATATATAATTTAATATTATTATTATTAATCA
1 AACATAATTATTATTAAATATAATT-TAATAAAAATATATAATTTAATAAAATTCTTAATAATAA
* * * *
86164391 ATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAATTT
65 ATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAAATT
*
86164447 AACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAA
1 AACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAATAAA
* *
86164512 TATTCTTATATGAATTTAATAAAATCATAATATATAATACTATATAATATAATTT
66 TATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAAATT
* *
86164567 AAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAA
1 AACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAATAAA
* *
86164632 TATTCTTATATGAATTTAATAAAATCATAATATATAATACTATATAATATAGATT
66 TATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAAATT
86164687 AA
1 AA
86164689 TAATGTAGAG
Statistics
Matches: 342, Mismatches: 19, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
120 339 0.99
121 3 0.01
ACGTcount: A:0.51, C:0.05, G:0.01, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAATAAA
TATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAAATT
Found at i:86164372 original size:14 final size:15
Alignment explanation
Indices: 86164323--86164387 Score: 64
Period size: 15 Copynumber: 4.4 Consensus size: 15
86164313 ATAAAATATA
86164323 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
86164338 TATTAAATATATTAT
1 AATTAAATATATTAT
86164353 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
86164366 AATTTAATATTATTAT
1 AATTAAATA-TATTAT
*
86164382 TATTAA
1 AATTAA
86164388 TCAATATTCT
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
13 9 0.22
14 7 0.17
15 18 0.44
16 7 0.17
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:86164528 original size:38 final size:37
Alignment explanation
Indices: 86164481--86164664 Score: 140
Period size: 37 Copynumber: 4.7 Consensus size: 37
86164471 TTAATAAAAA
*
86164481 TATATAATTTAATAAAATTCTTAATATTAAATATTCT
1 TATATAATTTAATAAAATTCTTAATATTAAATATTAT
*
86164518 TATATGAATTTAATAAAA-TCATAATA-TATAATACTATAT
1 TATAT-AATTTAATAAAATTCTTAATATTA-AATA-T-TAT
* * * * ** *
86164557 AATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAA
1 TATATAATTT--AATAA-AATTCTT--A-AT-ATTAAATATTAT
*
86164601 TATATAATTTAATAAAATTCTTAATATTAAATATTCT
1 TATATAATTTAATAAAATTCTTAATATTAAATATTAT
*
86164638 TATATGAATTTAATAAAA-TCATAATAT
1 TATAT-AATTTAATAAAATTCTTAATAT
86164665 ATAATACTAT
Statistics
Matches: 114, Mismatches: 19, Indels: 28
0.71 0.12 0.17
Matches are distributed among these distances:
36 2 0.02
37 36 0.32
38 32 0.28
39 7 0.06
40 5 0.04
41 6 0.05
42 7 0.06
44 11 0.10
45 2 0.02
46 5 0.04
47 1 0.01
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (37 bp):
TATATAATTTAATAAAATTCTTAATATTAAATATTAT
Found at i:86164630 original size:18 final size:18
Alignment explanation
Indices: 86164464--86164617 Score: 76
Period size: 18 Copynumber: 8.9 Consensus size: 18
86164454 TTATTATTAA
86164464 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
*
86164482 ATATAATTTAATAAAATT
1 ATATAATTTAATAAAAAT
* ****
86164500 CT-TAATATTAAATATTCTT
1 ATATAAT-TT-AATAAAAAT
86164519 ATATGAATTTAAT-AAAAT
1 ATAT-AATTTAATAAAAAT
* * * *
86164537 -CATAATAT-ATAATACT
1 ATATAATTTAATAAAAAT
* *
86164553 ATATAATATAATTTAAAAT
1 ATATAATTTAA-TAAAAAT
* *
86164572 A-ATTA-TT-AT--TAA-
1 ATATAATTTAATAAAAAT
86164584 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
86164602 ATATAATTTAATAAAA
1 ATATAATTTAATAAAA
86164618 TTCTTAATAT
Statistics
Matches: 99, Mismatches: 23, Indels: 28
0.66 0.15 0.19
Matches are distributed among these distances:
12 1 0.01
13 5 0.05
14 2 0.02
15 5 0.05
16 8 0.08
17 16 0.16
18 41 0.41
19 15 0.15
20 3 0.03
21 3 0.03
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.42
Consensus pattern (18 bp):
ATATAATTTAATAAAAAT
Found at i:86170529 original size:21 final size:21
Alignment explanation
Indices: 86170505--86170544 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
86170495 CAATTATCCA
*
86170505 TTTATAATTTAAAGTTAATTT
1 TTTATAATTTAAAATTAATTT
**
86170526 TTTATTTTTTAAAATTAAT
1 TTTATAATTTAAAATTAAT
86170545 ATAATATTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (21 bp):
TTTATAATTTAAAATTAATTT
Found at i:86170556 original size:20 final size:21
Alignment explanation
Indices: 86170531--86170570 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
86170521 AATTTTTTAT
86170531 TTTTTAA-AAT-TAATATAATA
1 TTTTTAAGAATCTAAT-TAATA
86170551 TTTTTAAGAATCTAATTAAT
1 TTTTTAAGAATCTAATTAAT
86170571 TAGATATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 7 0.39
22 4 0.22
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (21 bp):
TTTTTAAGAATCTAATTAATA
Found at i:86171681 original size:26 final size:25
Alignment explanation
Indices: 86171652--86171781 Score: 90
Period size: 25 Copynumber: 5.2 Consensus size: 25
86171642 ATTCATATTT
86171652 GGGAATGCTCATATGAGCACATA-AAC
1 GGGAA-GCTCATATGAGC-CATATAAC
* *
86171678 GGGAAGCTCTTCTGAGCCATATAAC
1 GGGAAGCTCATATGAGCCATATAAC
* * * * *
86171703 GGGAAGTTAATGTGAGCTATGA-AAT
1 GGGAAGCTCATATGAGCCAT-ATAAC
* *
86171728 GGGAAGCTCATGTGAGCCA-ATATC
1 GGGAAGCTCATATGAGCCATATAAC
* *
86171752 GAGAAGCTCCA-AAGAGCCAT-TAAC
1 GGGAAGCT-CATATGAGCCATATAAC
86171776 GGGAAG
1 GGGAAG
86171782 GGCATGAGAG
Statistics
Matches: 81, Mismatches: 18, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
23 1 0.01
24 26 0.32
25 48 0.59
26 6 0.07
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.20
Consensus pattern (25 bp):
GGGAAGCTCATATGAGCCATATAAC
Found at i:86171918 original size:24 final size:24
Alignment explanation
Indices: 86171833--86171925 Score: 71
Period size: 24 Copynumber: 3.9 Consensus size: 24
86171823 CAACCAATCG
* * * *
86171833 GGATGCTCATAAGAGCTATTAACA
1 GGATGCTCATGAGAGCCAATATCA
* *
86171857 GGA-ACTCGTGAGAGCCATATATCA
1 GGATGCTCATGAGAGCCA-ATATCA
* * * *
86171881 AGAAGCTCAAGAGAGCCAATATCG
1 GGATGCTCATGAGAGCCAATATCA
*
86171905 GGATGCTCATGAGAGCTAATA
1 GGATGCTCATGAGAGCCAATA
86171926 ACGAGACGTT
Statistics
Matches: 52, Mismatches: 15, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
23 10 0.19
24 31 0.60
25 11 0.21
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (24 bp):
GGATGCTCATGAGAGCCAATATCA
Found at i:86177070 original size:32 final size:33
Alignment explanation
Indices: 86177022--86177083 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 33
86177012 AGAGACATAG
* **
86177022 GCTGTGTCAGGCCGTGTGAGGCCACACAGGTTA
1 GCTGTGTCAAGCCGTGTGAAACCACACAGGTTA
86177055 GCTGTGT-AAGCCGTGTGAAACCACACAGG
1 GCTGTGTCAAGCCGTGTGAAACCACACAGG
86177084 CGTGTAGACC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 19 0.73
33 7 0.27
ACGTcount: A:0.23, C:0.24, G:0.34, T:0.19
Consensus pattern (33 bp):
GCTGTGTCAAGCCGTGTGAAACCACACAGGTTA
Found at i:86184228 original size:27 final size:27
Alignment explanation
Indices: 86184195--86184249 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
86184185 TTTGCATTAC
86184195 ATTACATCATATGCATTAAAGGCTATA
1 ATTACATCATATGCATTAAAGGCTATA
86184222 ATTACATCATATGCATTAAAGGCTATA
1 ATTACATCATATGCATTAAAGGCTATA
86184249 A
1 A
86184250 CAAGATTCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.33
Consensus pattern (27 bp):
ATTACATCATATGCATTAAAGGCTATA
Found at i:86184484 original size:21 final size:21
Alignment explanation
Indices: 86184450--86184489 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
86184440 ATAAGAGATG
86184450 AAAGATCAAATGATGGAGTCCC
1 AAAGATCAAATGAT-GAGTCCC
*
86184472 AAAGA-CAGATGATGAGTC
1 AAAGATCAAATGATGAGTC
86184490 AGTTGTCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 7 0.41
22 5 0.29
ACGTcount: A:0.42, C:0.15, G:0.25, T:0.17
Consensus pattern (21 bp):
AAAGATCAAATGATGAGTCCC
Done.