Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 268 of 290
Found at i:86191630 original size:60 final size:59
Alignment explanation
Indices: 86191537--86191654 Score: 148
Period size: 60 Copynumber: 2.0 Consensus size: 59
86191527 TTAAAAAAAA
* ** ** *
86191537 GCCAAAGTGAAAACTCGTAAAGGGTGCTTTGAGACCCAATA-AAAATAGAAAAGATAAAGG
1 GCCAAAGTGAAAACCCACAAAGGGCACTTTGAGACCCAATATAAAA-A-AAAAGAAAAAGG
*
86191597 GCCAAAGTGAAAACCCACAAAGGGCACTTTGAGACTCAATATAAAAAAAAAGAAAAAG
1 GCCAAAGTGAAAACCCACAAAGGGCACTTTGAGACCCAATATAAAAAAAAAGAAAAAG
86191655 AAAAAGAAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
59 10 0.20
60 36 0.72
61 4 0.08
ACGTcount: A:0.50, C:0.15, G:0.20, T:0.14
Consensus pattern (59 bp):
GCCAAAGTGAAAACCCACAAAGGGCACTTTGAGACCCAATATAAAAAAAAAGAAAAAGG
Found at i:86191654 original size:6 final size:6
Alignment explanation
Indices: 86191639--86191676 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
86191629 GACTCAATAT
*
86191639 AAAA-A AAAAGA AAAAGA AAAAGAA AAAAGA AAGAGA AA
1 AAAAGA AAAAGA AAAAGA AAAAG-A AAAAGA AAAAGA AA
86191677 GGAAAGGCCA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
5 4 0.13
6 20 0.67
7 6 0.20
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:86191665 original size:13 final size:13
Alignment explanation
Indices: 86191639--86191676 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
86191629 GACTCAATAT
86191639 AAAA-AAAAAG-A
1 AAAAGAAAAAGAA
86191650 AAAAGAAAAAGAA
1 AAAAGAAAAAGAA
*
86191663 AAAAGAAAGAGAA
1 AAAAGAAAAAGAA
86191676 A
1 A
86191677 GGAAAGGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 4 0.17
12 6 0.25
13 14 0.58
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (13 bp):
AAAAGAAAAAGAA
Found at i:86193048 original size:144 final size:144
Alignment explanation
Indices: 86192856--86193144 Score: 384
Period size: 144 Copynumber: 2.0 Consensus size: 144
86192846 ACAATGGAAC
* * *
86192856 AGATTTAAGCCGCCAGCCCTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAATGAGTCTTAT
1 AGATTTAAGCCACCAGCCCTATCTCTCTGAGGTAGCAAGAGAGCAGGTTAAAGAACGAGTCTTAT
* *
86192921 CTTTCTAAGGTAGCAAGAAAGCAGACTGAAGATTAAAGATCTTATCTCTCTAA-AATTGTAGCGG
66 CTTCCTAAGGTAGCAAGAAAGCAGACTGAAGATTAAAGATCTTATCTCCCTAAGAA--GTAGCGG
86192985 AGCAGATCG-AAGATT
129 AGCAGATCGAAAGATT
* * * * *
86193000 AGATTTGAGCCACTAGCCTTATCTCTTTGAGGTAGCAAGAGATCAGGTTAAAGAACGAGTCTTAT
1 AGATTTAAGCCACCAGCCCTATCTCTCTGAGGTAGCAAGAGAGCAGGTTAAAGAACGAGTCTTAT
* * * * * * * *
86193065 CTTCCTGAGGTAGTAAGGAAGTAGACTGAAGATTGAAGATTTTATCTCCCTAAGCAGTAGTGGAG
66 CTTCCTAAGGTAGCAAGAAAGCAGACTGAAGATTAAAGATCTTATCTCCCTAAGAAGTAGCGGAG
86193130 CAGATCGAAAGATT
131 CAGATCGAAAGATT
86193144 A
1 A
86193145 AGAATTTTAT
Statistics
Matches: 125, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
143 15 0.12
144 109 0.87
145 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (144 bp):
AGATTTAAGCCACCAGCCCTATCTCTCTGAGGTAGCAAGAGAGCAGGTTAAAGAACGAGTCTTAT
CTTCCTAAGGTAGCAAGAAAGCAGACTGAAGATTAAAGATCTTATCTCCCTAAGAAGTAGCGGAG
CAGATCGAAAGATT
Found at i:86193454 original size:177 final size:176
Alignment explanation
Indices: 86193007--86193536 Score: 622
Period size: 177 Copynumber: 3.0 Consensus size: 176
86192997 ATTAGATTTG
*
86193007 AGCCACTAGCCTTATCTCTTTGAGGTAGCAAGAGA-TCAGGTTAAAGA-ACGAGTCTTATCTTCC
1 AGCCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGT-AGGTTAAAGATACGAGTCTTATCTTCC
* *
86193070 TGAGGTAGTAAGGAAGTAGACTGAAGATTGAAGATTTTATCTCCCTAAGCAGTAGTGGAGCAGAT
65 TGAGGTAGTAAGGAAGTAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAAT
* *
86193135 CGAAAGATTAAGAATTTTATCTCCATGTATCGGCAATGGAACAGATTGT
130 C-AAAG-TTAAGAATTTTATCTCCATGTATCGGCAATGGAGCAGATTCT
* * * * * * * *
86193184 AGTCACTAGCCTTACCTCCCTGAAGGT-GC-AGTGGAGCAAGTTTAATATACGAGTCTTATCTTC
1 AGCCACTAGCCTTATCTCTCTG-AGGTAGCAAG-AGAGTAGGTTAAAGATACGAGTCTTATCTTC
* *
86193247 CTGAGGTAGTAAGGAAGTAGACTAAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGTAAA
64 CTGAGGTAGTAAGGAAGTAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAA
** * *
86193312 TCAAAGTTGGTGAATCTTATCTCCATGTATCGGTAATGGAGCAGATTCT
129 TCAAAGTT-AAGAATTTTATCTCCATGTATCGGCAATGGAGCAGATTCT
* * * * *
86193361 TGCCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGTAGGTTGAAGATATTG-GTATTATCTTCT
1 AGCCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGTAGGTTAAAGATA-CGAGTCTTATCTTCC
* * * * * *
86193425 TGAGGTAGCAAGGAAGCAGACTGAAGATTGAGGATCCTATTTCCCTTAAGCAGCTA-TGGAGCAC
65 TGAGGTAGTAAGGAAGTAGACTGAAGATTGAAGATCTTATCTCCC-TAAGCAG-TAGTGGAGCAA
* ** *
86193489 GTCAAAGACAACAAATTTTATCTCCATGTATCGGCAATGGAGCAGATT
128 ATCAAAGTTAA-GAATTTTATCTCCATGTATCGGCAATGGAGCAGATT
86193537 TAAGTCACCA
Statistics
Matches: 295, Mismatches: 47, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
176 8 0.03
177 148 0.50
178 137 0.46
179 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (176 bp):
AGCCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGTAGGTTAAAGATACGAGTCTTATCTTCCT
GAGGTAGTAAGGAAGTAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATC
AAAGTTAAGAATTTTATCTCCATGTATCGGCAATGGAGCAGATTCT
Found at i:86193582 original size:178 final size:175
Alignment explanation
Indices: 86193010--86193582 Score: 575
Period size: 178 Copynumber: 3.2 Consensus size: 175
86193000 AGATTTGAGC
* * * ** * *
86193010 CACTAGCCTTATCTCTTTGAGGTAGCAA-GAGATCAGGTTAAAGA-ACGAGTCTTATCTTCCTGA
1 CACTAGCCTTATCTCTCTGAAGTTGCAATG-GAAAAGGTTGAAGATACGAGTATTATCTTCCTGA
*
86193073 GGTAGTAAGGAAGTAGACTGAAGATTGAAGATTTTATCTCCCTAAGCAGTAGTGGAGCAGATCGA
65 GGTAGTAAGGAAGTAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAG-TC-A
* *
86193138 AAGATTAAGAATTTTATCTCCATGTATCGGCAATGGAACAGATTGTAGT
128 AAGA-TAAGAATTTTATCTCCATGTATCGGCAATGGAGCAGATTCTAGT
* * * * * * * *
86193187 CACTAGCCTTACCTCCCTGAAGGTGCAGTGGAGCAA-GTTTAATATACGAGTCTTATCTTCCTGA
1 CACTAGCCTTATCTCTCTGAAGTTGCAATGGA-AAAGGTTGAAGATACGAGTATTATCTTCCTGA
* * *
86193251 GGTAGTAAGGAAGTAGACTAAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGTAAATCAA
65 GGTAGTAAGGAAGTAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAG-CAGTCAA
* ** * * * *
86193316 AGTTGGTGAATCTTATCTCCATGTATCGGTAATGGAGCAGATTCTTGC
129 AGAT-AAGAATTTTATCTCCATGTATCGGCAATGGAGCAGATTCTAGT
* * ** * *
86193364 CACTAGCCTTATCTCTCTGAGGTAGCAA-GAGAGTAGGTTGAAGATATTG-GTATTATCTTCTTG
1 CACTAGCCTTATCTCTCTGAAGTTGCAATG-GAAAAGGTTGAAGATA-CGAGTATTATCTTCCTG
* * * * *
86193427 AGGTAGCAAGGAAGCAGACTGAAGATTGAGGATCCTATTTCCCTTAAGCAGCTA-TGGAGCACGT
64 AGGTAGTAAGGAAGTAGACTGAAGATTGAAGATCTTATCTCCC-TAAGCAG-TAGTGGAGCA-GT
* *
86193491 CAAAGACAACAAATTTTATCTCCATGTATCGGCAATGGAGCAGATT-TAAGT
126 CAAAGATAA-GAATTTTATCTCCATGTATCGGCAATGGAGCAGATTCT-AGT
* * *
86193542 CACCAGCCTTGTTTCTCTGAAGTTGCAATGGAAAAGGTTGA
1 CACTAGCCTTATCTCTCTGAAGTTGCAATGGAAAAGGTTGA
86193583 GATTACCAAA
Statistics
Matches: 321, Mismatches: 61, Indels: 27
0.78 0.15 0.07
Matches are distributed among these distances:
176 3 0.01
177 151 0.47
178 163 0.51
179 4 0.01
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.29
Consensus pattern (175 bp):
CACTAGCCTTATCTCTCTGAAGTTGCAATGGAAAAGGTTGAAGATACGAGTATTATCTTCCTGAG
GTAGTAAGGAAGTAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGTCAAAG
ATAAGAATTTTATCTCCATGTATCGGCAATGGAGCAGATTCTAGT
Found at i:86196361 original size:41 final size:41
Alignment explanation
Indices: 86196242--86196354 Score: 163
Period size: 41 Copynumber: 2.8 Consensus size: 41
86196232 GTTTACGATA
* * **
86196242 AAACGCCGCAAAAAACTGAGCAATAGCGGCGTTTTTGGTTC
1 AAACGCCGCTAAAAATTGAGCAATAGCGGCGTTTTTGGCCC
* *
86196283 AAACGCCGCTAAAAGTTGAGCAATAGCGGTGTTTTTGGCCC
1 AAACGCCGCTAAAAATTGAGCAATAGCGGCGTTTTTGGCCC
*
86196324 AAACGCCGCTAAAAATTGAACAATAGCGGCG
1 AAACGCCGCTAAAAATTGAGCAATAGCGGCG
86196355 CCTTTGGAAA
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 63 1.00
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.20
Consensus pattern (41 bp):
AAACGCCGCTAAAAATTGAGCAATAGCGGCGTTTTTGGCCC
Found at i:86196442 original size:40 final size:41
Alignment explanation
Indices: 86196347--86196454 Score: 146
Period size: 41 Copynumber: 2.6 Consensus size: 41
86196337 AATTGAACAA
* *
86196347 TAGCGGCGCCTTTGGAAAAACGCCACTATAGATCGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
* * * *
86196388 TAGCGGTGCTTTTTGGAAAAACGCCGCTATTGCTC-AGTTTT
1 TAGCGGCGC-TTTTGGAAAAACGCCGCTATAGATCGAGGTTT
86196429 TAGCGGCGCTTTTGGAAAAACGCCGC
1 TAGCGGCGCTTTTGGAAAAACGCCGC
86196455 AAAAAACATT
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
40 17 0.29
41 21 0.36
42 21 0.36
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (41 bp):
TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
Found at i:86196664 original size:14 final size:14
Alignment explanation
Indices: 86196640--86196685 Score: 58
Period size: 14 Copynumber: 3.2 Consensus size: 14
86196630 AGTTTATGTA
86196640 TTATGGGTTTAGGGG
1 TTAT-GGTTTAGGGG
*
86196655 TTATGGTTTAAGGG
1 TTATGGTTTAGGGG
86196669 TTGA-GGTTTAGGGG
1 TT-ATGGTTTAGGGG
86196683 TTA
1 TTA
86196686 AGGGTTTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 1 0.04
14 22 0.79
15 5 0.18
ACGTcount: A:0.17, C:0.00, G:0.41, T:0.41
Consensus pattern (14 bp):
TTATGGTTTAGGGG
Found at i:86196721 original size:21 final size:22
Alignment explanation
Indices: 86196662--86196723 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 22
86196652 GGGTTATGGT
* *
86196662 TTAAGGGTTGA-GGTTTAGGGG
1 TTAAGGGTTTATGGTTTAGGAG
** *
86196683 TTAAGGGTTTATATTTTAGGAT
1 TTAAGGGTTTATGGTTTAGGAG
86196705 TTAA-GGTTTATGGTTTAGG
1 TTAAGGGTTTATGGTTTAGG
86196724 GATTAGGGAT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
21 23 0.70
22 10 0.30
ACGTcount: A:0.23, C:0.00, G:0.34, T:0.44
Consensus pattern (22 bp):
TTAAGGGTTTATGGTTTAGGAG
Found at i:86196963 original size:7 final size:7
Alignment explanation
Indices: 86196936--86197040 Score: 88
Period size: 7 Copynumber: 15.0 Consensus size: 7
86196926 GATGAATTAT
86196936 GGGTTTA
1 GGGTTTA
*
86196943 GGGATTA
1 GGGTTTA
*
86196950 TGGTTTA
1 GGGTTTA
86196957 GGGTTTA
1 GGGTTTA
86196964 GGGTTTA
1 GGGTTTA
*
86196971 TGGTTTA
1 GGGTTTA
86196978 GGGTTTA
1 GGGTTTA
86196985 GGG-TTA
1 GGGTTTA
*
86196991 GAGTTTA
1 GGGTTTA
* *
86196998 AGGTGTAA
1 GGGT-TTA
86197006 GGG-TTA
1 GGGTTTA
* *
86197012 GGGGCTAA
1 -GGGTTTA
86197020 GGGTTTA
1 GGGTTTA
*
86197027 GAGTTTA
1 GGGTTTA
*
86197034 GTGTTTA
1 GGGTTTA
86197041 CAAGATAGGG
Statistics
Matches: 77, Mismatches: 17, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
6 7 0.09
7 64 0.83
8 6 0.08
ACGTcount: A:0.20, C:0.01, G:0.39, T:0.40
Consensus pattern (7 bp):
GGGTTTA
Found at i:86196988 original size:21 final size:21
Alignment explanation
Indices: 86196936--86196989 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
86196926 GATGAATTAT
*
86196936 GGGTTTAGGGATTATGGTTTA
1 GGGTTTAGGGTTTATGGTTTA
86196957 GGGTTTAGGGTTTATGGTTTA
1 GGGTTTAGGGTTTATGGTTTA
86196978 GGGTTTAGGGTT
1 GGGTTTAGGGTT
86196990 AGAGTTTAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.15, C:0.00, G:0.41, T:0.44
Consensus pattern (21 bp):
GGGTTTAGGGTTTATGGTTTA
Found at i:86199617 original size:69 final size:69
Alignment explanation
Indices: 86199501--86199635 Score: 207
Period size: 69 Copynumber: 2.0 Consensus size: 69
86199491 CTCTGGTTAA
*
86199501 AACATCAGAGTTGTTCACACACTAACATTTGACTTATCTATCGATAGACTGATGCATCAAAAACT
1 AACATCAGAGTTGTTCACACACTAACATTTGACTTATCTATCGATAGACTGATACATCAAAAACT
86199566 AAAC
66 AAAC
** * * * *
86199570 AACATCAGAGTTGTTTTCACACTAGCATTTGACTTATCTATCTATAGATTGATACATCAAAGACT
1 AACATCAGAGTTGTTCACACACTAACATTTGACTTATCTATCGATAGACTGATACATCAAAAACT
86199635 A
66 A
86199636 TTACTTTTGC
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
69 59 1.00
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.31
Consensus pattern (69 bp):
AACATCAGAGTTGTTCACACACTAACATTTGACTTATCTATCGATAGACTGATACATCAAAAACT
AAAC
Found at i:86201268 original size:91 final size:91
Alignment explanation
Indices: 86201113--86201291 Score: 340
Period size: 91 Copynumber: 2.0 Consensus size: 91
86201103 TATTTTATAG
* *
86201113 AGCAGTAGATGTGAAAGTCTCACTGGTGAGCCTCTTGTTTCACATTATTTTTGTTATTTTTATTC
1 AGCAGTAGATGTGAAAGTCTCACTAGTGAGCCTCTTGTTTCACATTACTTTTGTTATTTTTATTC
86201178 GTTGTATTTGATACATATGCATATCC
66 GTTGTATTTGATACATATGCATATCC
86201204 AGCAGTAGATGTGAAAGTCTCACTAGTGAGCCTCTTGTTTCACATTACTTTTGTTATTTTTATTC
1 AGCAGTAGATGTGAAAGTCTCACTAGTGAGCCTCTTGTTTCACATTACTTTTGTTATTTTTATTC
86201269 GTTGTATTTGATACATATGCATA
66 GTTGTATTTGATACATATGCATA
86201292 CACATTTAGG
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 86 1.00
ACGTcount: A:0.24, C:0.15, G:0.17, T:0.44
Consensus pattern (91 bp):
AGCAGTAGATGTGAAAGTCTCACTAGTGAGCCTCTTGTTTCACATTACTTTTGTTATTTTTATTC
GTTGTATTTGATACATATGCATATCC
Found at i:86206082 original size:72 final size:72
Alignment explanation
Indices: 86206003--86206145 Score: 196
Period size: 72 Copynumber: 2.0 Consensus size: 72
86205993 GGTCTTGCAT
* *** *
86206003 TTTGCTGCTCGCAACTATACACCTTTGACAGGCTCATTTTTTTGCTTACTGTCTTCAACAGGTGT
1 TTTGCTGCTCGCAACCATACACCTTTGACAGGCTCACACTTTGGCTTACTGTCTTCAACAGGTGT
86206068 CTTCAAC
66 CTTCAAC
* * ***
86206075 TTTGCTGCTTGCAACCATACACCTTTGACAGGCTCGCACTTTGGCTTACTGTCTTCAGTTGGTGT
1 TTTGCTGCTCGCAACCATACACCTTTGACAGGCTCACACTTTGGCTTACTGTCTTCAACAGGTGT
86206140 CTTCAA
66 CTTCAA
86206146 TAGGCTCGCA
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
72 61 1.00
ACGTcount: A:0.18, C:0.27, G:0.17, T:0.38
Consensus pattern (72 bp):
TTTGCTGCTCGCAACCATACACCTTTGACAGGCTCACACTTTGGCTTACTGTCTTCAACAGGTGT
CTTCAAC
Found at i:86211804 original size:7 final size:7
Alignment explanation
Indices: 86211794--86211831 Score: 58
Period size: 7 Copynumber: 5.3 Consensus size: 7
86211784 AGGTTGATGG
86211794 TTTATGT
1 TTTATGT
86211801 TTTATGT
1 TTTATGT
86211808 TTTATGT
1 TTTATGT
*
86211815 TTTATGA
1 TTTATGT
86211822 TTTAGTGT
1 TTTA-TGT
86211830 TT
1 TT
86211832 GGAGATTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
7 24 0.86
8 4 0.14
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (7 bp):
TTTATGT
Found at i:86212439 original size:66 final size:66
Alignment explanation
Indices: 86212287--86212458 Score: 177
Period size: 66 Copynumber: 2.6 Consensus size: 66
86212277 CCTAACCCCT
* * * * *
86212287 AACCCCTTAAATCAACAACACTTTAAACCCCAGACCCTAAATCTCTAATTATAAACCCCTAAAAC
1 AACCCC-TAAA-CATCAACTCTTTAAACCCCAAACCCTAAATCTCAAATCATAAACCCCTAAAAC
*
86212352 TAT
64 TAC
* * * * * *
86212355 AAACACTAATCAAT-AACTCTTTAAACACCAAACCCTAAATCTCAAATCATAAACCCTTAAAATT
1 AACCCCTAAAC-ATCAACTCTTTAAACCCCAAACCCTAAATCTCAAATCATAAACCCCTAAAACT
*
86212419 CC
65 AC
*
86212421 AACCCCTAAACATCAACTC-TTAAACCCCAAGCCCTAAA
1 AACCCCTAAACATCAACTCTTTAAACCCCAAACCCTAAA
86212459 ACTAACCTCT
Statistics
Matches: 84, Mismatches: 18, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
65 19 0.23
66 57 0.68
67 4 0.05
68 4 0.05
ACGTcount: A:0.44, C:0.33, G:0.01, T:0.22
Consensus pattern (66 bp):
AACCCCTAAACATCAACTCTTTAAACCCCAAACCCTAAATCTCAAATCATAAACCCCTAAAACTA
C
Found at i:86212521 original size:28 final size:29
Alignment explanation
Indices: 86212469--86212523 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
86212459 ACTAACCTCT
* * *
86212469 AAACCCATAAACTATAGATCGTAAATCCC
1 AAACCCATAAACTATAAACCATAAATCCC
86212498 AAACCC-TAAACTATAAACCATAAATC
1 AAACCCATAAACTATAAACCATAAATC
86212524 ATAAACTCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 17 0.74
29 6 0.26
ACGTcount: A:0.49, C:0.27, G:0.04, T:0.20
Consensus pattern (29 bp):
AAACCCATAAACTATAAACCATAAATCCC
Found at i:86212529 original size:28 final size:28
Alignment explanation
Indices: 86212468--86212544 Score: 73
Period size: 28 Copynumber: 2.7 Consensus size: 28
86212458 AACTAACCTC
* * * *
86212468 TAAACCCATAAACTATAGATCGTAAATCC
1 TAAACCC-TAAACTATAAACCATAAATCA
*
86212497 CAAACCCTAAACTATAAACCATAAATCA
1 TAAACCCTAAACTATAAACCATAAATCA
* *
86212525 TAAACTCTTAAACCATAAAC
1 TAAAC-CCTAAACTATAAAC
86212545 ACTAAAATCT
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
28 21 0.54
29 18 0.46
ACGTcount: A:0.49, C:0.26, G:0.03, T:0.22
Consensus pattern (28 bp):
TAAACCCTAAACTATAAACCATAAATCA
Found at i:86212550 original size:22 final size:21
Alignment explanation
Indices: 86212498--86212550 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
86212488 CGTAAATCCC
*
86212498 AAACCCTAAACTATAAACCAT
1 AAACACTAAACTATAAACCAT
*
86212519 AAATCA-TAAACTCTTAAACCAT
1 AAA-CACTAAACT-ATAAACCAT
86212541 AAACACTAAA
1 AAACACTAAA
86212551 ATCTAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 11 0.41
22 16 0.59
ACGTcount: A:0.55, C:0.25, G:0.00, T:0.21
Consensus pattern (21 bp):
AAACACTAAACTATAAACCAT
Found at i:86212751 original size:8 final size:7
Alignment explanation
Indices: 86212733--86212784 Score: 54
Period size: 7 Copynumber: 7.6 Consensus size: 7
86212723 AATCTTCAAA
86212733 AAAAATT
1 AAAAATT
*
86212740 AAAATTT
1 AAAAATT
*
86212747 AAAAATA
1 AAAAATT
*
86212754 AAAAACT
1 AAAAATT
86212761 AAAAATT
1 AAAAATT
86212768 AAAAA--
1 AAAAATT
86212773 AAAAACTT
1 AAAAA-TT
86212781 AAAA
1 AAAA
86212785 GTTTAATATT
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
5 5 0.14
7 27 0.75
8 4 0.11
ACGTcount: A:0.75, C:0.04, G:0.00, T:0.21
Consensus pattern (7 bp):
AAAAATT
Found at i:86212756 original size:21 final size:20
Alignment explanation
Indices: 86212730--86212790 Score: 77
Period size: 21 Copynumber: 3.0 Consensus size: 20
86212720 AAAAATCTTC
86212730 AAAAAAAATTAAAATTTAAA
1 AAAAAAAATTAAAATTTAAA
* *
86212750 AATAAAAAACTAAAAATTAAA
1 AA-AAAAAATTAAAATTTAAA
*
86212771 AAAAAAACTTAAAAGTTTAA
1 AAAAAAAATTAAAA-TTTAA
86212791 TATTTAATAT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
20 12 0.35
21 22 0.65
ACGTcount: A:0.72, C:0.03, G:0.02, T:0.23
Consensus pattern (20 bp):
AAAAAAAATTAAAATTTAAA
Found at i:86213465 original size:171 final size:168
Alignment explanation
Indices: 86213154--86213468 Score: 388
Period size: 171 Copynumber: 1.8 Consensus size: 168
86213144 CCCAAATTTG
* *
86213154 CCCCTCTTCTCTCCCTCGTCTCTGCAAATCAGTTTATTTTTCTCATCTCAGTTCTCGACCACCGC
1 CCCCTCTTCTCTCCCTCGTATCTACAAATCAGTTTATTTTTCTCATCTCAGTTCTCGACCACCGC
* * * * * *
86213219 CGTCTCCGTTGATTTTTTCCGGATTTGACCTGTATTCCGTGTCGAATCGTGTTGACACAGGTACT
66 CGTCT-CG-TGATTTTTTCCGGATCTGACCCGTATACCGTGTCGAATCCTGTCGACACAAGTACT
86213284 GCACCCCAAATTGCCGAGCCAGGGTAACAAAGCTTACCAT
129 GCACCCCAAATTGCCGAGCCAGGGTAACAAAGCTTACCAT
* *
86213324 CCCCTCTTCTCTCTCTCGTATCTACAAATCAGGTTTCTTCATTCTCTTCTCATCTCAGTTCTCGC
1 CCCCTCTTCTCTCCCTCGTATCTACAAATCA-G--T-TT-ATT-T-TTCTCATCTCAGTTCTCGA
* *
86213389 CCACCTCC-TCT-G-G-TTTTTGT-CGGATCTGACCCGTATACCGTGTCGGATCCTGTCGACACA
59 CCACCGCCGTCTCGTGATTTTT-TCCGGATCTGACCCGTATACCGTGTCGAATCCTGTCGACACA
*
86213449 AGTACTGCATCCCAAATTGC
123 AGTACTGCACCCCAAATTGC
86213469 TCCGAGCCCG
Statistics
Matches: 124, Mismatches: 13, Indels: 15
0.82 0.09 0.10
Matches are distributed among these distances:
170 28 0.23
171 58 0.47
172 2 0.02
173 1 0.01
174 3 0.02
175 3 0.02
176 4 0.03
177 25 0.20
ACGTcount: A:0.18, C:0.33, G:0.16, T:0.33
Consensus pattern (168 bp):
CCCCTCTTCTCTCCCTCGTATCTACAAATCAGTTTATTTTTCTCATCTCAGTTCTCGACCACCGC
CGTCTCGTGATTTTTTCCGGATCTGACCCGTATACCGTGTCGAATCCTGTCGACACAAGTACTGC
ACCCCAAATTGCCGAGCCAGGGTAACAAAGCTTACCAT
Found at i:86214559 original size:34 final size:34
Alignment explanation
Indices: 86214519--86214650 Score: 182
Period size: 34 Copynumber: 4.0 Consensus size: 34
86214509 ATGTAATTGG
* *
86214519 AAATTTTATTTCTTTTTGTAAATCATTTTTCTTT
1 AAATTTTATTTATTTGTGTAAATCATTTTTCTTT
* *
86214553 AAATTTTATTTCTTTGTGTAAATTATTTTTCTTT
1 AAATTTTATTTATTTGTGTAAATCATTTTTCTTT
* *
86214587 AAATTTTATTTATTTTTGT--A--ATTTCTCTTT
1 AAATTTTATTTATTTGTGTAAATCATTTTTCTTT
86214617 AAATTTTATTTATTTGTGTAAATCATTTTTCTTT
1 AAATTTTATTTATTTGTGTAAATCATTTTTCTTT
86214651 GTTTAGTGAC
Statistics
Matches: 87, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
30 27 0.31
32 2 0.02
34 58 0.67
ACGTcount: A:0.24, C:0.07, G:0.05, T:0.64
Consensus pattern (34 bp):
AAATTTTATTTATTTGTGTAAATCATTTTTCTTT
Found at i:86214564 original size:15 final size:15
Alignment explanation
Indices: 86214546--86214597 Score: 52
Period size: 15 Copynumber: 3.2 Consensus size: 15
86214536 GTAAATCATT
86214546 TTTCTTTAAATTTTA
1 TTTCTTTAAATTTTA
86214561 TTTCTTTGTGTAAATTATT-
1 TTTC--T-T-TAAATT-TTA
86214580 TTTCTTTAAATTTTA
1 TTTCTTTAAATTTTA
86214595 TTT
1 TTT
86214598 ATTTTTGTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 12
0.72 0.00 0.28
Matches are distributed among these distances:
14 2 0.06
15 13 0.42
16 1 0.03
17 2 0.06
18 1 0.03
19 10 0.32
20 2 0.06
ACGTcount: A:0.23, C:0.06, G:0.04, T:0.67
Consensus pattern (15 bp):
TTTCTTTAAATTTTA
Found at i:86214576 original size:19 final size:18
Alignment explanation
Indices: 86214519--86214607 Score: 59
Period size: 17 Copynumber: 5.1 Consensus size: 18
86214509 ATGTAATTGG
86214519 AAATTTTATTTCTTTTTGT
1 AAATTTTATTTC-TTTTGT
*
86214538 AAA--TCATTT-TTCTT-T
1 AAATTTTATTTCTT-TTGT
86214553 AAATTTTATTTCTTTGTGT
1 AAATTTTATTTCTTT-TGT
86214572 AAA--TTATTT-TTCTT-T
1 AAATTTTATTTCTT-TTGT
*
86214587 AAATTTTATTTATTTTTGT
1 AAATTTTATTT-CTTTTGT
86214606 AA
1 AA
86214608 TTTCTCTTTA
Statistics
Matches: 56, Mismatches: 2, Indels: 24
0.68 0.02 0.29
Matches are distributed among these distances:
15 10 0.18
16 5 0.09
17 24 0.43
18 5 0.09
19 12 0.21
ACGTcount: A:0.26, C:0.06, G:0.04, T:0.64
Consensus pattern (18 bp):
AAATTTTATTTCTTTTGT
Found at i:86214646 original size:64 final size:66
Alignment explanation
Indices: 86214519--86214650 Score: 196
Period size: 64 Copynumber: 2.0 Consensus size: 66
86214509 ATGTAATTGG
* * * *
86214519 AAATTTTATTTCTTTTTGTAAATCATTTTTCTTTAAATTTTATTTCTTTGTGTAAATTATTTTTC
1 AAATTTTATTTATTTTTGT-AA-CATTTCTCTTTAAATTTTATTTATTTGTGTAAATCATTTTTC
86214584 TTT
64 TTT
86214587 AAATTTTATTTATTTTTGT-A-ATTTCTCTTTAAATTTTATTTATTTGTGTAAATCATTTTTCTT
1 AAATTTTATTTATTTTTGTAACATTTCTCTTTAAATTTTATTTATTTGTGTAAATCATTTTTCTT
86214650 T
66 T
86214651 GTTTAGTGAC
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
64 41 0.68
66 1 0.02
68 18 0.30
ACGTcount: A:0.24, C:0.07, G:0.05, T:0.64
Consensus pattern (66 bp):
AAATTTTATTTATTTTTGTAACATTTCTCTTTAAATTTTATTTATTTGTGTAAATCATTTTTCTT
T
Found at i:86217401 original size:43 final size:43
Alignment explanation
Indices: 86217354--86217481 Score: 116
Period size: 43 Copynumber: 3.0 Consensus size: 43
86217344 ATAGTAGCGT
*
86217354 TTTTTAGAAAAAGCAACTCGAAAGGTCATGGTTTTTAACGGCG
1 TTTTTAGAAAAAGCAACTCTAAAGGTCATGGTTTTTAACGGCG
** * *
86217397 TTTTT-GAAAAAAG-TGCTGCTAAAGGTCATAGTTTTTAGCGGCG
1 TTTTTAG-AAAAAGCAACT-CTAAAGGTCATGGTTTTTAACGGCG
* * ** * * *
86217440 TTTGTAAAAAAAGCGCCACTAAAGGTCATGATCTTTAACGGC
1 TTTTTAGAAAAAGCAACTCTAAAGGTCATGGTTTTTAACGGC
86217482 ATTTGCGGGG
Statistics
Matches: 67, Mismatches: 14, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
42 3 0.04
43 63 0.94
44 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (43 bp):
TTTTTAGAAAAAGCAACTCTAAAGGTCATGGTTTTTAACGGCG
Found at i:86217548 original size:43 final size:43
Alignment explanation
Indices: 86217374--86217567 Score: 178
Period size: 43 Copynumber: 4.5 Consensus size: 43
86217364 AAGCAACTCG
* * *** * *
86217374 AAAGGTCATGGTTTTTAACGGCGTTTTTGAAAAAAGTG-CTGCT
1 AAAGGTCATGGTCTTTAGCGGCGTTTGCAAAAAAAGCGAC-ACT
* * * *
86217417 AAAGGTCATAGTTTTTAGCGGCGTTTGTAAAAAAAGCGCCACT
1 AAAGGTCATGGTCTTTAGCGGCGTTTGCAAAAAAAGCGACACT
* * * ***
86217460 AAAGGTCATGATCTTTAACGGCATTTGCGGGGAAAA-CGACACT
1 AAAGGTCATGGTCTTTAGCGGCGTTTGC-AAAAAAAGCGACACT
86217503 AAAGGTCATGGTCTTTAGCGGCGTTTGCAAAAAAAGCG-CAGCT
1 AAAGGTCATGGTCTTTAGCGGCGTTTGCAAAAAAAGCGACA-CT
*
86217546 AAAAGTCATGGTCTTTAGCGGC
1 AAAGGTCATGGTCTTTAGCGGC
86217568 TTTTTTTGTG
Statistics
Matches: 124, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
42 6 0.05
43 113 0.91
44 5 0.04
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.27
Consensus pattern (43 bp):
AAAGGTCATGGTCTTTAGCGGCGTTTGCAAAAAAAGCGACACT
Found at i:86222608 original size:15 final size:15
Alignment explanation
Indices: 86222569--86222635 Score: 73
Period size: 15 Copynumber: 4.5 Consensus size: 15
86222559 GTATCTTGGG
*
86222569 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
86222584 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
86222599 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
86222614 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
86222629 TTTCTTT
1 TTTCTTT
86222636 TTTCGATTTT
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
14 2 0.05
15 40 0.95
ACGTcount: A:0.10, C:0.19, G:0.13, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:86222629 original size:30 final size:30
Alignment explanation
Indices: 86222560--86222635 Score: 84
Period size: 30 Copynumber: 2.5 Consensus size: 30
86222550 CATAGTATCG
* *
86222560 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATCCTGGATCTCTC
* *
86222590 TAT-TCTGGATTTCTTTATTCC-GGGTTTCTC
1 TATCT-TGGATTTCTTTA-TCCTGGATCTCTC
86222620 TATCTTGGATTTCTTT
1 TATCTTGGATTTCTTT
86222636 TTTCGATTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
29 1 0.03
30 34 0.87
31 4 0.10
ACGTcount: A:0.11, C:0.18, G:0.16, T:0.55
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATCCTGGATCTCTC
Found at i:86227938 original size:32 final size:32
Alignment explanation
Indices: 86227897--86227960 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
86227887 AACGGCTTAG
86227897 AAGCGTAACCAAATGCTAACTGGTTGTGTGGT
1 AAGCGTAACCAAATGCTAACTGGTTGTGTGGT
86227929 AAGCGTAACCAAATGCTAACTGGTTGTGTGGT
1 AAGCGTAACCAAATGCTAACTGGTTGTGTGGT
86227961 TTCTTGATGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (32 bp):
AAGCGTAACCAAATGCTAACTGGTTGTGTGGT
Found at i:86229222 original size:22 final size:23
Alignment explanation
Indices: 86229197--86229244 Score: 55
Period size: 22 Copynumber: 2.1 Consensus size: 23
86229187 TTCCAAAATT
*
86229197 AATAAATTTTAATAAT-TATA-AA
1 AATAAA-TTTAAAAATATATATAA
*
86229219 AATATATTTAAAAATATATATAA
1 AATAAATTTAAAAATATATATAA
86229242 AAT
1 AAT
86229245 TTTCAAATCC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 8 0.36
22 9 0.41
23 5 0.23
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (23 bp):
AATAAATTTAAAAATATATATAA
Found at i:86229230 original size:12 final size:12
Alignment explanation
Indices: 86229213--86229243 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
86229203 TTTTAATAAT
86229213 TATAAAAATATA
1 TATAAAAATATA
*
86229225 TTTAAAAATATA
1 TATAAAAATATA
86229237 TATAAAA
1 TATAAAA
86229244 TTTTCAAATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (12 bp):
TATAAAAATATA
Found at i:86229579 original size:27 final size:27
Alignment explanation
Indices: 86229548--86229614 Score: 134
Period size: 27 Copynumber: 2.5 Consensus size: 27
86229538 AATAATGAAT
86229548 TTATGATTAAGTTTTACTAAAAAAAAC
1 TTATGATTAAGTTTTACTAAAAAAAAC
86229575 TTATGATTAAGTTTTACTAAAAAAAAC
1 TTATGATTAAGTTTTACTAAAAAAAAC
86229602 TTATGATTAAGTT
1 TTATGATTAAGTT
86229615 AATTTTTCAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.40
Consensus pattern (27 bp):
TTATGATTAAGTTTTACTAAAAAAAAC
Found at i:86242438 original size:21 final size:20
Alignment explanation
Indices: 86242408--86242452 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
86242398 AACAAAAATC
*
86242408 AAACCAAAAAGGAATGAAAGA
1 AAACCAAAAAGGAAAG-AAGA
* *
86242429 AAACCCAAAAGTAAAGAAGA
1 AAACCAAAAAGGAAAGAAGA
86242449 AAAC
1 AAAC
86242453 AAGAACAAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.67, C:0.13, G:0.16, T:0.04
Consensus pattern (20 bp):
AAACCAAAAAGGAAAGAAGA
Found at i:86244792 original size:23 final size:23
Alignment explanation
Indices: 86244766--86244822 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 23
86244756 ATTATGAGAA
*
86244766 AAATATATATAATTTA-AATACAT
1 AAATATATATAATTAAGAATAC-T
86244789 AAATATAT-TATATTAAGAATACT
1 AAATATATATA-ATTAAGAATACT
86244812 AAATATA-ATAA
1 AAATATATATAA
86244823 AATTATTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
22 3 0.10
23 22 0.73
24 5 0.17
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.37
Consensus pattern (23 bp):
AAATATATATAATTAAGAATACT
Found at i:86245312 original size:24 final size:24
Alignment explanation
Indices: 86245278--86245327 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
86245268 AAGCGTATCA
* *
86245278 TAGCTCAAACCACTGACATAGGCT
1 TAGCTCAAACCACTAACATAAGCT
*
86245302 TAGCTCGAACCACTAACATAAGCT
1 TAGCTCAAACCACTAACATAAGCT
86245326 TA
1 TA
86245328 AGACTAACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.36, C:0.28, G:0.14, T:0.22
Consensus pattern (24 bp):
TAGCTCAAACCACTAACATAAGCT
Found at i:86248842 original size:27 final size:27
Alignment explanation
Indices: 86248809--86248863 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
86248799 AGTTTTTAAG
86248809 TTAATCGAGTTAATGAATACTATTTTA
1 TTAATCGAGTTAATGAATACTATTTTA
*
86248836 TTAATCGAGTTAATGAATCCTATTTTA
1 TTAATCGAGTTAATGAATACTATTTTA
86248863 T
1 T
86248864 CATCCTAGCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.35, C:0.09, G:0.11, T:0.45
Consensus pattern (27 bp):
TTAATCGAGTTAATGAATACTATTTTA
Found at i:86254125 original size:46 final size:46
Alignment explanation
Indices: 86254065--86254475 Score: 565
Period size: 46 Copynumber: 9.0 Consensus size: 46
86254055 TTTGACATGA
* * * * * * * *
86254065 TGCCATAGTGTCTTTCAACTATGATCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGC
** * *
86254111 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCATGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
* *** *** * *
86254157 TGCCATGATATCTTTCAACCATGGTCTTATTTATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
*
86254203 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGG-
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
* *
86254248 TGCCATGGTATCTTTCAACCATCGTCTTACACGTTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
86254294 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
*
86254340 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
*
86254386 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
86254432 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
86254476 AGAGCACACT
Statistics
Matches: 337, Mismatches: 26, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
45 48 0.14
46 289 0.86
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
Found at i:86256654 original size:20 final size:19
Alignment explanation
Indices: 86256615--86256665 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
86256605 TTATACTAAA
86256615 TAATTAATAATAA-AATATC
1 TAATTAA-AATAATAATATC
*
86256634 TCATTAAAATAATATATATC
1 TAATTAAAATAATA-ATATC
86256654 TAATT-AAATAAT
1 TAATTAAAATAAT
86256666 CATAAAATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 5 0.18
19 14 0.50
20 9 0.32
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (19 bp):
TAATTAAAATAATAATATC
Found at i:86257573 original size:201 final size:201
Alignment explanation
Indices: 86257228--86257630 Score: 797
Period size: 201 Copynumber: 2.0 Consensus size: 201
86257218 CCGAATATAC
86257228 AGGAGAATCTTCTAATCAACAACCAAGTCAAACTATACTTATACCACATAGGATAGATGATTTAA
1 AGGAGAATCTTCTAATCAACAACCAAGTCAAACTATACTTATACCACATAGGATAGATGATTTAA
86257293 ATAAAAGAAATGTGGCTCAAGGTGGAAAATATTTAGACTTGACTAATATTTCAATATCAGATTAT
66 ATAAAAGAAATGTGGCTCAAGGTGGAAAATATTTAGACTTGACTAATATTTCAATATCAGATTAT
86257358 GAAAAAACCATAGACGATTGGGCACAGTCAATGACAATCGTTGTAAACAACAACAGTACTTGGTC
131 GAAAAAACCATAGACGATTGGGCACAGTCAATGACAATCGTTGTAAACAACAACAGTACTTGGTC
86257423 AAAAGA
196 AAAAGA
86257429 AGGAGAATCTTCTAATCAACAACCAAGTCAAACTATACTTATACCACATAGGATAGATGATTTAA
1 AGGAGAATCTTCTAATCAACAACCAAGTCAAACTATACTTATACCACATAGGATAGATGATTTAA
*
86257494 ATAAAAGAAATGTGGCTCAAGGTGGAATATATTTAGACTTGACTAATATTTCAATATCAGATTAT
66 ATAAAAGAAATGTGGCTCAAGGTGGAAAATATTTAGACTTGACTAATATTTCAATATCAGATTAT
86257559 GAAAAAACCATAGACGATTGGGCACAGTCAATGACAATCGTTGTAAACAACAACAGTACTTGGTC
131 GAAAAAACCATAGACGATTGGGCACAGTCAATGACAATCGTTGTAAACAACAACAGTACTTGGTC
86257624 AAAAGA
196 AAAAGA
86257630 A
1 A
86257631 AAATTTTTAA
Statistics
Matches: 201, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
201 201 1.00
ACGTcount: A:0.43, C:0.15, G:0.16, T:0.26
Consensus pattern (201 bp):
AGGAGAATCTTCTAATCAACAACCAAGTCAAACTATACTTATACCACATAGGATAGATGATTTAA
ATAAAAGAAATGTGGCTCAAGGTGGAAAATATTTAGACTTGACTAATATTTCAATATCAGATTAT
GAAAAAACCATAGACGATTGGGCACAGTCAATGACAATCGTTGTAAACAACAACAGTACTTGGTC
AAAAGA
Found at i:86268442 original size:37 final size:37
Alignment explanation
Indices: 86268392--86268470 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
86268382 TTATTACGAA
* * *
86268392 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
86268429 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
86268466 GTCTT
1 GTCTT
86268471 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:86268667 original size:47 final size:47
Alignment explanation
Indices: 86268589--86268811 Score: 331
Period size: 47 Copynumber: 4.7 Consensus size: 47
86268579 CCCTTCGGGA
* * * * * *
86268589 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
86268636 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86268683 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86268730 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
86268777 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
86268812 AGAATCCTAA
Statistics
Matches: 162, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 1 0.01
47 161 0.99
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:86275531 original size:18 final size:18
Alignment explanation
Indices: 86275496--86275529 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
86275486 GTACAAGAGT
86275496 CTCAACACAAGGACAAAG
1 CTCAACACAAGGACAAAG
*
86275514 CTCAAC-CAAGGGCAAA
1 CTCAACACAAGGACAAA
86275530 AGAGTGATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.47, C:0.29, G:0.18, T:0.06
Consensus pattern (18 bp):
CTCAACACAAGGACAAAG
Found at i:86276226 original size:73 final size:73
Alignment explanation
Indices: 86276031--86276251 Score: 325
Period size: 75 Copynumber: 3.0 Consensus size: 73
86276021 TCTGTTTTCT
* *
86276031 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGTACGCTGAGGTATTTTCAATTATTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTACTG
86276096 TTTGTCAAAA
66 TTTGTC--AA
*
86276106 AAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTACTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTACTG
86276171 TTTGTCAA
66 TTTGTCAA
* * * * * * *
86276179 AAATCAACTCATACTGCGAGAGATGAGTTGAGCCTCAGGACATGCTGAGGTATTTTCGATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTACTG
*
86276244 TTTTTCAA
66 TTTGTCAA
86276252 TTTATGTTTT
Statistics
Matches: 134, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
73 66 0.49
75 68 0.51
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.32
Consensus pattern (73 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTACTG
TTTGTCAA
Found at i:86276334 original size:88 final size:87
Alignment explanation
Indices: 86276158--86276335 Score: 218
Period size: 86 Copynumber: 2.0 Consensus size: 87
86276148 CGCTGAGGTA
*
86276158 TTTTCAATTACTGTTTGTCAAAAATCAACTCATACTGCGAGAGATGAGTTGAGCCTCAGGACATG
1 TTTTCAATTACTGTTTGTCAAAAATCAACTCATACTGCGAGAGATGAATTGAGCCTCAGGACATG
* *
86276223 CTGAGGTATTTTCGATTTCTGT
66 CTGAGGTATTTTCAATTTATGT
* * * * * *
86276245 TTTTCAATTTA-TGTTT-TCAAAAATCAATTCATATTGCTAGAGGTGAATTGATCCTCGGGTCAC
1 TTTTCAA-TTACTGTTTGTCAAAAATCAACTCATACTGCGAGAGATGAATTGAGCCTCAGG--AC
86276308 ATAGC-GAGGTATTTTCAATTTATGT
63 AT-GCTGAGGTATTTTCAATTTATGT
86276333 TTT
1 TTT
86276336 CAAAAATCAA
Statistics
Matches: 78, Mismatches: 9, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
86 36 0.46
87 12 0.15
88 28 0.36
89 2 0.03
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.39
Consensus pattern (87 bp):
TTTTCAATTACTGTTTGTCAAAAATCAACTCATACTGCGAGAGATGAATTGAGCCTCAGGACATG
CTGAGGTATTTTCAATTTATGT
Found at i:86276366 original size:74 final size:74
Alignment explanation
Indices: 86276245--86276409 Score: 262
Period size: 74 Copynumber: 2.2 Consensus size: 74
86276235 CGATTTCTGT
* *
86276245 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGATCCTCGGGTCACAT
1 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCAGGT--CAT
86276310 A-G-CGAGGTA
64 ACGCCGAGGTA
86276319 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCAGGTCATAC
1 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCAGGTCATAC
86276384 GCCGAGGTA
66 GCCGAGGTA
**
86276393 TTTTCAATAGATGTTTT
1 TTTTCAATTTATGTTTT
86276410 TTTTTCAATT
Statistics
Matches: 85, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
72 4 0.05
73 1 0.01
74 80 0.94
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (74 bp):
TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCAGGTCATAC
GCCGAGGTA
Found at i:86276585 original size:174 final size:166
Alignment explanation
Indices: 86276100--86276585 Score: 483
Period size: 174 Copynumber: 2.9 Consensus size: 166
86276090 TTATTGTTTG
* **
86276100 TCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGG-GGCACGCTGAGGTATTTTCA
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCACACGCTGAGGTATTTTCA
* * *
86276164 ATTACTGTTTGTCAAAAATCAACTCATACTGCGAGAGATGAGTTGAGCCTCAGG--ACATGCTGA
66 ATT-CTGTTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGA
* * * *
86276227 GGTATTTTCGA-TTTC---TGTTTTTCAATTTATGTTT
129 GGTATTTTCAATTTTCGTTTTTTTTTCAATTTATCTTC
* * * * *
86276261 TC--AAAAATCAATTCATATTGCTAGAGGTGAATTGATCCTCGGGTCACATAGC-GAGGTATTTT
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCACA-CGCTGAGGTATTTT
* * * * * *
86276323 CAATTTATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCAGGTCATACGCCG
64 CAA-TTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTG
** *
86276388 AGGTATTTTCAATAGAT-GTTTTTTTTTCAATTTCTACTTC
128 AGGTATTTTCAAT-TTTCGTTTTTTTTTCAATTTAT-CTTC
* * * *
86276428 TCAAAAAAATTAACTCTTATTGCGAGAGGTGAGTTGAGCCTTGGCTTACACGCTGAGGTATTTTC
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-TCACACGCTGAGGTATTTTC
* *
86276493 AAGTTCTGCTTTTCAAAAAAAAATCTACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCGCA
65 AA-TTCTG-TTTTC----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCACA
86276557 CGCTGAGGTATTTTCAATTTTCGTTTTTT
123 CGCTGAGGTATTTTCAATTTTCGTTTTTT
86276586 CAATTTATGC
Statistics
Matches: 258, Mismatches: 44, Indels: 33
0.77 0.13 0.10
Matches are distributed among these distances:
159 33 0.13
160 40 0.16
161 22 0.09
162 20 0.08
164 1 0.00
166 13 0.05
167 4 0.02
168 4 0.02
169 52 0.20
170 5 0.02
173 3 0.01
174 61 0.24
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (166 bp):
TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCACACGCTGAGGTATTTTCA
ATTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGG
TATTTTCAATTTTCGTTTTTTTTTCAATTTATCTTC
Found at i:86276599 original size:14 final size:14
Alignment explanation
Indices: 86276582--86276617 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
86276572 AATTTTCGTT
*
86276582 TTTTCAATTTATGC
1 TTTTCAAATTATGC
*
86276596 TTTTCAAATTCTGC
1 TTTTCAAATTATGC
86276610 TTTTCAAA
1 TTTTCAAA
86276618 AAAATCAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.06, T:0.53
Consensus pattern (14 bp):
TTTTCAAATTATGC
Found at i:86276763 original size:88 final size:90
Alignment explanation
Indices: 86276593--86276763 Score: 213
Period size: 88 Copynumber: 1.9 Consensus size: 90
86276583 TTTCAATTTA
** * ** *
86276593 TGCTTTTCAAATTCTGCTTTTCAAAAAAATCAACTCATATTTTGAGAGGTGAGTTAAGCCTCAGG
1 TGCTTTTCAAATTAAGC-TTTCAAAAAAACCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGC
*
86276658 TCACATGTCGAGGTATTTTCAAAATC
65 TCACATGTCGAGCTATTTTCAAAATC
* *
86276684 TGCTTTTCAAATTAAG-TTTC-AAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGCT
1 TGCTTTTCAAATTAAGCTTTCAAAAAAACCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGCT
*
86276747 CACGTG-CTGAGCTATTT
66 CACATGTC-GAGCTATTT
86276764 CTGTTTTAAT
Statistics
Matches: 69, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
87 1 0.01
88 50 0.72
89 4 0.06
91 14 0.20
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (90 bp):
TGCTTTTCAAATTAAGCTTTCAAAAAAACCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGCT
CACATGTCGAGCTATTTTCAAAATC
Found at i:86276996 original size:52 final size:52
Alignment explanation
Indices: 86276940--86277117 Score: 178
Period size: 52 Copynumber: 3.3 Consensus size: 52
86276930 AAGATCGAAA
86276940 CTACAAATCTCTTCTCCCTGAATCTCAGAAGTTTCAGTGTAGTAGGCCGAGG
1 CTACAAATCTCTTCTCCCTGAATCTCAGAAGTTTCAGTGTAGTAGGCCGAGG
* * * * * ** **
86276992 CTACAAATCTTTTCTACTTGAATTCTAAGTCCTTGAAGTTTCAGTAG-AGAAGATCGAAA
1 CTACAAATCTCTTCTCCCTGAA-TC----T-C-AGAAGTTTCAGT-GTAGTAGGCCGAGG
*
86277051 CTACAAATCTCTTCTCCCTGAATCTCCGAAGTTTCAGTGTAGTAGGCCGAGG
1 CTACAAATCTCTTCTCCCTGAATCTCAGAAGTTTCAGTGTAGTAGGCCGAGG
*
86277103 CTACAAATCCCTTCT
1 CTACAAATCTCTTCT
86277118 ACTTGAATTC
Statistics
Matches: 98, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
51 1 0.01
52 51 0.52
53 3 0.03
54 1 0.01
57 1 0.01
58 3 0.03
59 37 0.38
60 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (52 bp):
CTACAAATCTCTTCTCCCTGAATCTCAGAAGTTTCAGTGTAGTAGGCCGAGG
Found at i:86277059 original size:59 final size:59
Alignment explanation
Indices: 86276987--86277175 Score: 207
Period size: 52 Copynumber: 3.3 Consensus size: 59
86276977 TGTAGTAGGC
*
86276987 CGAGGCTACAAATCTTTTCTACTTGAATTCTAAGTCCTTGAAGTTTCAGTAGAGAAGAT
1 CGAGGCTACAAATCTCTTCTACTTGAATTCTAAGTCCTTGAAGTTTCAGTAGAGAAGAT
** * * * **
86277046 CGAAACTACAAATCTCTTCTCCCTGAA-TC----TCC--GAAGTTTCAGT-GTAGTAGGC
1 CGAGGCTACAAATCTCTTCTACTTGAATTCTAAGTCCTTGAAGTTTCAGTAG-AGAAGAT
* *
86277098 CGAGGCTACAAATCCCTTCTACTTGAATTCTAAGTCCTTGAAGTTT-AGTAAAGAAGAT
1 CGAGGCTACAAATCTCTTCTACTTGAATTCTAAGTCCTTGAAGTTTCAGTAGAGAAGAT
*
86277156 CGAGGCTACAAATATCTTCT
1 CGAGGCTACAAATCTCTTCT
86277176 CCCTCAATCT
Statistics
Matches: 102, Mismatches: 19, Indels: 19
0.73 0.14 0.14
Matches are distributed among these distances:
51 1 0.01
52 37 0.36
53 2 0.02
54 3 0.03
57 3 0.03
58 27 0.26
59 29 0.28
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.31
Consensus pattern (59 bp):
CGAGGCTACAAATCTCTTCTACTTGAATTCTAAGTCCTTGAAGTTTCAGTAGAGAAGAT
Found at i:86277086 original size:111 final size:111
Alignment explanation
Indices: 86276887--86277204 Score: 523
Period size: 111 Copynumber: 2.9 Consensus size: 111
86276877 CAGATTTTAT
86276887 ATCCCTTCTACTTGAATTCTAAGTCCTTGAAGTTTCAGTAGAGAAGATCGAAACTACAAATCTCT
1 ATCCCTTCTACTTGAATTCTAAGTCCTTGAAGTTTCAGTAGAGAAGATCGAAACTACAAATCTCT
*
86276952 TCTCCCTGAATCTCAGAAGTTTCAGTGTAGTAGGCCGAGGCTACAA
66 TCTCCCTGAATCTCCGAAGTTTCAGTGTAGTAGGCCGAGGCTACAA
**
86276998 ATCTTTTCTACTTGAATTCTAAGTCCTTGAAGTTTCAGTAGAGAAGATCGAAACTACAAATCTCT
1 ATCCCTTCTACTTGAATTCTAAGTCCTTGAAGTTTCAGTAGAGAAGATCGAAACTACAAATCTCT
86277063 TCTCCCTGAATCTCCGAAGTTTCAGTGTAGTAGGCCGAGGCTACAA
66 TCTCCCTGAATCTCCGAAGTTTCAGTGTAGTAGGCCGAGGCTACAA
* ** *
86277109 ATCCCTTCTACTTGAATTCTAAGTCCTTGAAGTTT-AGTAAAGAAGATCGAGGCTACAAATATCT
1 ATCCCTTCTACTTGAATTCTAAGTCCTTGAAGTTTCAGTAGAGAAGATCGAAACTACAAATCTCT
* * *
86277173 TCTCCCTCAATCT-CGAAAGTTCCAGTGGAGTA
66 TCTCCCTGAATCTCCG-AAGTTTCAGTGTAGTA
86277205 AATCATGGCT
Statistics
Matches: 194, Mismatches: 12, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
109 2 0.01
110 51 0.26
111 141 0.73
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31
Consensus pattern (111 bp):
ATCCCTTCTACTTGAATTCTAAGTCCTTGAAGTTTCAGTAGAGAAGATCGAAACTACAAATCTCT
TCTCCCTGAATCTCCGAAGTTTCAGTGTAGTAGGCCGAGGCTACAA
Found at i:86286298 original size:35 final size:35
Alignment explanation
Indices: 86286233--86286299 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
86286223 GTCAGATGCG
* *
86286233 TTTGTGTAATAATTGATTACTTTTTCTTTTTACTA
1 TTTGTGTAATAATTGATTAATTGTTCTTTTTACTA
*
86286268 TTTGTGTAATAATTTATATAATTGTT-TTTTTA
1 TTTGTGTAATAATTGAT-TAATTGTTCTTTTTA
86286300 TGGAAAATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
35 22 0.79
36 6 0.21
ACGTcount: A:0.25, C:0.04, G:0.09, T:0.61
Consensus pattern (35 bp):
TTTGTGTAATAATTGATTAATTGTTCTTTTTACTA
Found at i:86288409 original size:20 final size:19
Alignment explanation
Indices: 86288381--86288421 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
86288371 TTTACATGAG
*
86288381 ATGTGTAAAATAATATAAAT
1 ATGTGTAAAAAAATA-AAAT
*
86288401 ATGTTTAAAAAAATAAAAT
1 ATGTGTAAAAAAATAAAAT
86288420 AT
1 AT
86288422 ATGCCATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (19 bp):
ATGTGTAAAAAAATAAAAT
Found at i:86292580 original size:4 final size:4
Alignment explanation
Indices: 86292573--86292692 Score: 240
Period size: 4 Copynumber: 30.0 Consensus size: 4
86292563 TTTTGCATGC
86292573 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
86292621 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
86292669 ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT
86292693 TTCCTTTATG
Statistics
Matches: 116, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 116 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:86298757 original size:11 final size:11
Alignment explanation
Indices: 86298743--86298767 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
86298733 TTGTTATGTC
86298743 ATTACAAGTCT
1 ATTACAAGTCT
86298754 ATTACAAGTCT
1 ATTACAAGTCT
86298765 ATT
1 ATT
86298768 CTGCAGGCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (11 bp):
ATTACAAGTCT
Found at i:86304246 original size:31 final size:31
Alignment explanation
Indices: 86304211--86304273 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
86304201 TCAAAGAAGA
86304211 AAAAAAAATGATTTTTGATGCAAGTGATCAT
1 AAAAAAAATGATTTTTGATGCAAGTGATCAT
86304242 AAAAAAAATGATTTTTGATGCAAGTGATCAT
1 AAAAAAAATGATTTTTGATGCAAGTGATCAT
86304273 A
1 A
86304274 TTTCTTCTAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.46, C:0.06, G:0.16, T:0.32
Consensus pattern (31 bp):
AAAAAAAATGATTTTTGATGCAAGTGATCAT
Found at i:86304935 original size:30 final size:29
Alignment explanation
Indices: 86304895--86304953 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
86304885 TATTTTATTA
86304895 TTAATTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTGTTATTATTTTAAAGGCATTTG
* *
86304924 TTAATTTTGTTATTATTTTAGAGGTATTTG
1 TTAA-TTTGTTATTATTTTAAAGGCATTTG
86304954 CTTGTTTAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 4 0.15
30 23 0.85
ACGTcount: A:0.25, C:0.02, G:0.15, T:0.58
Consensus pattern (29 bp):
TTAATTTGTTATTATTTTAAAGGCATTTG
Found at i:86305075 original size:12 final size:12
Alignment explanation
Indices: 86305058--86305091 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
86305048 ATATATATTT
*
86305058 AAAAATTATATA
1 AAAAATAATATA
86305070 AAAAATAATATA
1 AAAAATAATATA
*
86305082 AAAATTAATA
1 AAAAATAATA
86305092 AGAGCGGGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (12 bp):
AAAAATAATATA
Found at i:86305469 original size:21 final size:22
Alignment explanation
Indices: 86305443--86305484 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
86305433 ATAAAGTAGG
86305443 TTATATATTATT-TTTATAATA
1 TTATATATTATTATTTATAATA
*
86305464 TTATATATTATTATTTTTAAT
1 TTATATATTATTATTTATAAT
86305485 TCATATAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (22 bp):
TTATATATTATTATTTATAATA
Found at i:86305490 original size:21 final size:21
Alignment explanation
Indices: 86305445--86305491 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
86305435 AAAGTAGGTT
*
86305445 ATATATTATTTTTATAATATT
1 ATATATTATTTTTATAATATC
*
86305466 ATATATTATTATTTTTAAT-TC
1 ATATATTATT-TTTATAATATC
86305487 ATATA
1 ATATA
86305492 ATAATAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (21 bp):
ATATATTATTTTTATAATATC
Found at i:86305577 original size:57 final size:57
Alignment explanation
Indices: 86305463--86305593 Score: 142
Period size: 57 Copynumber: 2.3 Consensus size: 57
86305453 TTTTTATAAT
* * **
86305463 ATTATATATTATTATT-TTTAATTCATATAATAATAATTACATTAAGAATGTTTTTAA
1 ATTATATATTATT-TTATTAAATTCATATAATAATAATTACATTAAGAATATGATTAA
* * **
86305520 ATTATATATTATTTTATTAAATTGTATTTAATAATAATTATGTTAA-AATATGATTAA
1 ATTATATATTATTTTATTAAATT-CATATAATAATAATTACATTAAGAATATGATTAA
*
86305577 ATTATTTATT-TTTTATT
1 ATTATATATTATTTTATT
86305594 TTTATTAAAA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
56 9 0.14
57 36 0.57
58 18 0.29
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (57 bp):
ATTATATATTATTTTATTAAATTCATATAATAATAATTACATTAAGAATATGATTAA
Found at i:86307470 original size:24 final size:24
Alignment explanation
Indices: 86307442--86307493 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
86307432 TTCCTAGAAG
* *
86307442 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGAATAATAT
*
86307466 ATTTAGCATTTATTAGAATAATTT
1 ATTTAGCATTTATTAGAATAATAT
86307490 ATTT
1 ATTT
86307494 TACCTACAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.02, G:0.08, T:0.54
Consensus pattern (24 bp):
ATTTAGCATTTATTAGAATAATAT
Found at i:86312847 original size:12 final size:11
Alignment explanation
Indices: 86312831--86312868 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
86312821 CATGGTTTGG
86312831 TTTTTTGTTTT
1 TTTTTTGTTTT
86312842 TGTTTTTGTTTCT
1 T-TTTTTGTTT-T
86312855 TTTTTT-TTTT
1 TTTTTTGTTTT
86312865 TTTT
1 TTTT
86312869 GCACCCAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 5 0.20
11 4 0.16
12 14 0.56
13 2 0.08
ACGTcount: A:0.00, C:0.03, G:0.08, T:0.89
Consensus pattern (11 bp):
TTTTTTGTTTT
Found at i:86316990 original size:3 final size:3
Alignment explanation
Indices: 86316982--86317027 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
86316972 CCCCTCTCTC
86316982 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
86317028 TTCTTTTAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:86317769 original size:3 final size:3
Alignment explanation
Indices: 86317761--86317789 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
86317751 GTGTTATTAC
86317761 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
86317790 AGACACGACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:86321863 original size:45 final size:45
Alignment explanation
Indices: 86321799--86321891 Score: 186
Period size: 45 Copynumber: 2.1 Consensus size: 45
86321789 GGAACCAGAC
86321799 ACTCTAGAAAAAGAGATAGCTTGATAATTCTTCATTTCCAATCAA
1 ACTCTAGAAAAAGAGATAGCTTGATAATTCTTCATTTCCAATCAA
86321844 ACTCTAGAAAAAGAGATAGCTTGATAATTCTTCATTTCCAATCAA
1 ACTCTAGAAAAAGAGATAGCTTGATAATTCTTCATTTCCAATCAA
86321889 ACT
1 ACT
86321892 TCCAAGCAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.31
Consensus pattern (45 bp):
ACTCTAGAAAAAGAGATAGCTTGATAATTCTTCATTTCCAATCAA
Found at i:86325432 original size:18 final size:18
Alignment explanation
Indices: 86325409--86325531 Score: 156
Period size: 18 Copynumber: 6.8 Consensus size: 18
86325399 CGTTTACAGT
*
86325409 ACTATTCACGTATATGGC
1 ACTATTCACGTATACGGC
* *
86325427 ACTATTCACGTATATGGT
1 ACTATTCACGTATACGGC
*
86325445 ACTATTCACGTATACAGC
1 ACTATTCACGTATACGGC
* *
86325463 ACTATTCACGTATACAGT
1 ACTATTCACGTATACGGC
* *
86325481 ACTATTCACGTACATGGC
1 ACTATTCACGTATACGGC
*
86325499 ACTATTCACGTATACGGT
1 ACTATTCACGTATACGGC
*
86325517 ACTGTTCACGTATAC
1 ACTATTCACGTATAC
86325532 AGTAGTTGGG
Statistics
Matches: 92, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 92 1.00
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.33
Consensus pattern (18 bp):
ACTATTCACGTATACGGC
Found at i:86325454 original size:36 final size:36
Alignment explanation
Indices: 86325407--86325530 Score: 194
Period size: 36 Copynumber: 3.4 Consensus size: 36
86325397 ACCGTTTACA
*
86325407 GTACTATTCACGTATATGGCACTATTCACGTATATG
1 GTACTATTCACGTATATGGCACTATTCACGTATACG
** *
86325443 GTACTATTCACGTATACAGCACTATTCACGTATACA
1 GTACTATTCACGTATATGGCACTATTCACGTATACG
*
86325479 GTACTATTCACGTACATGGCACTATTCACGTATACG
1 GTACTATTCACGTATATGGCACTATTCACGTATACG
*
86325515 GTACTGTTCACGTATA
1 GTACTATTCACGTATA
86325531 CAGTAGTTGG
Statistics
Matches: 78, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 78 1.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (36 bp):
GTACTATTCACGTATATGGCACTATTCACGTATACG
Found at i:86325485 original size:54 final size:54
Alignment explanation
Indices: 86325403--86325535 Score: 194
Period size: 54 Copynumber: 2.5 Consensus size: 54
86325393 TATGACCGTT
** * * *
86325403 TACAGTACTATTCACGTATATGGCACTATTCACGTATATGGTACTATTCACGTA
1 TACAGTACTATTCACGTATACAGTACTATTCACGTACATGGCACTATTCACGTA
*
86325457 TACAGCACTATTCACGTATACAGTACTATTCACGTACATGGCACTATTCACGTA
1 TACAGTACTATTCACGTATACAGTACTATTCACGTACATGGCACTATTCACGTA
* *
86325511 TACGGTACTGTTCACGTATACAGTA
1 TACAGTACTATTCACGTATACAGTA
86325536 GTTGGGATTG
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 70 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (54 bp):
TACAGTACTATTCACGTATACAGTACTATTCACGTACATGGCACTATTCACGTA
Found at i:86334907 original size:21 final size:21
Alignment explanation
Indices: 86334881--86334921 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
86334871 ATCTGCTCAA
* *
86334881 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
86334902 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
86334922 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:86351486 original size:6 final size:6
Alignment explanation
Indices: 86351475--86351506 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
86351465 ATGATGTAAA
86351475 TGAATC TGAATC TGAATC TGAATC TGAATC TG
1 TGAATC TGAATC TGAATC TGAATC TGAATC TG
86351507 TAACCCCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (6 bp):
TGAATC
Found at i:86360531 original size:15 final size:15
Alignment explanation
Indices: 86360511--86360547 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
86360501 TTTGACTCAC
86360511 CATCATCATCACGAT
1 CATCATCATCACGAT
86360526 CATCATCATCACGAT
1 CATCATCATCACGAT
*
86360541 CACCATC
1 CATCATC
86360548 TCCATCATGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.32, C:0.38, G:0.05, T:0.24
Consensus pattern (15 bp):
CATCATCATCACGAT
Found at i:86362124 original size:60 final size:59
Alignment explanation
Indices: 86362004--86362140 Score: 143
Period size: 60 Copynumber: 2.3 Consensus size: 59
86361994 CAGTGTTAAC
* * *
86362004 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAACCCATTACAG-ATCAGAGTATAT
* **
86362065 TGGGCCTAGCCCATATCAGTATCAATCTGGGCTGTAACCCTATTACA-AGTC-GAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAACCC-ATTACAGA-TCAGAG-TATAT
* *
86362125 TGGGCCTTGGCCATAT
1 TGGGCCTAGCCCATAT
86362141 TAACACAGTT
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
59 4 0.06
60 50 0.77
61 11 0.17
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.29
Consensus pattern (59 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAACCCATTACAGATCAGAGTATAT
Found at i:86362187 original size:19 final size:20
Alignment explanation
Indices: 86362145--86362187 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
86362135 CCATATTAAC
** *
86362145 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
86362165 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
86362184 ACAG
1 ACAG
86362188 CCTCATATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.21
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:86364508 original size:17 final size:19
Alignment explanation
Indices: 86364486--86364531 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
86364476 ACATACATGC
86364486 AATAAT-ATTTT-TCTAAT
1 AATAATAATTTTATCTAAT
*
86364503 AATAATAATTTTATCTCAT
1 AATAATAATTTTATCTAAT
*
86364522 AATACTAATT
1 AATAATAATT
86364532 AAAATTTCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 6 0.24
18 5 0.20
19 14 0.56
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (19 bp):
AATAATAATTTTATCTAAT
Found at i:86367922 original size:79 final size:81
Alignment explanation
Indices: 86367786--86367970 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
86367776 TTGAATGATG
* *
86367786 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
86367850 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
86367865 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
86367927 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
86367945 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
86367971 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:86367984 original size:40 final size:40
Alignment explanation
Indices: 86367787--86367970 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
86367777 TGAATGATGT
* * * *
86367787 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
86367827 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
86367867 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
86367905 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
86367946 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
86367971 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:86367992 original size:79 final size:79
Alignment explanation
Indices: 86367839--86368003 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
86367829 GGACTAAGAT
* * **
86367839 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
86367904 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
86367918 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
86367981 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
86367997 CCGAAGG
1 CCGAAGG
86368004 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:86369634 original size:27 final size:27
Alignment explanation
Indices: 86369604--86369656 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
86369594 CAGAGCCGTG
* *
86369604 GGCACTGTAGTTCATTATGAAATAGTT
1 GGCACTATAGTGCATTATGAAATAGTT
*
86369631 GGCACTATAGTGCATTTTGAAATAGT
1 GGCACTATAGTGCATTATGAAATAGT
86369657 GGATGCGTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.36
Consensus pattern (27 bp):
GGCACTATAGTGCATTATGAAATAGTT
Found at i:86371888 original size:45 final size:45
Alignment explanation
Indices: 86371719--86371890 Score: 128
Period size: 45 Copynumber: 4.0 Consensus size: 45
86371709 ACATATCATA
* * *
86371719 CAATGCCAACGTCCCAGACGTGATCTTACATGTAATCACATA--T
1 CAATGCCAATGTCCCAGACGTGGTCTTACATGTAAACACATATGT
* * * * *
86371762 CGATGCCACTGTCCTAGACAG-GGTCTTACA--CAAATCAAATATG-
1 CAATGCCAATGTCCCAGAC-GTGGTCTTACATGTAAA-CACATATGT
** * * * *
86371805 --ATGCTGATGTTCCAGACATGGTCTTACACGTAACCACATATGT
1 CAATGCCAATGTCCCAGACGTGGTCTTACATGTAAACACATATGT
86371848 CAATGCCAATGTCCCAGACGTGGTCTTACATG-AGAACACATAT
1 CAATGCCAATGTCCCAGACGTGGTCTTACATGTA-AACACATAT
86371891 CGGAAATCCT
Statistics
Matches: 95, Mismatches: 23, Indels: 20
0.69 0.17 0.14
Matches are distributed among these distances:
41 23 0.24
42 12 0.13
43 25 0.26
44 2 0.02
45 33 0.35
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (45 bp):
CAATGCCAATGTCCCAGACGTGGTCTTACATGTAAACACATATGT
Found at i:86374374 original size:27 final size:27
Alignment explanation
Indices: 86374343--86374421 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 27
86374333 CCCTAATTGA
*
86374343 TAAAATGACTGTTTTGCCCTTATGTAG
1 TAAAATGACTGTTTTGCCCTTATATAG
* * *
86374370 TAAAATGACTATTTTGCCCCTCTATAG
1 TAAAATGACTGTTTTGCCCTTATATAG
**
86374397 TAGGATGACTGTTTTG-CCTTATATA
1 TAAAATGACTGTTTTGCCCTTATATA
86374422 ATGTATAGAT
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
26 7 0.16
27 36 0.84
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATATAG
Found at i:86380863 original size:20 final size:20
Alignment explanation
Indices: 86380817--86380855 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
86380807 AATGCACAAG
* *
86380817 CCCATGTGCTTTGGCAGATA
1 CCCATGTGCTTTGGCACACA
86380837 CCCATGTGCTTTGGCACAC
1 CCCATGTGCTTTGGCACAC
86380856 GTCCATGTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.31, G:0.23, T:0.28
Consensus pattern (20 bp):
CCCATGTGCTTTGGCACACA
Found at i:86385311 original size:36 final size:37
Alignment explanation
Indices: 86385239--86385316 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
86385229 TTATTACGAA
* *
86385239 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
86385276 GTCTTACCCGGACAAAATC-CCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
86385312 GTCTT
1 GTCTT
86385317 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:86385552 original size:47 final size:47
Alignment explanation
Indices: 86385435--86385862 Score: 714
Period size: 47 Copynumber: 9.1 Consensus size: 47
86385425 CCCTTCGGGA
* * * * * * *
86385435 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
86385482 C-CGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86385528 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
86385575 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
86385622 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
86385669 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
86385716 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86385763 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86385812 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86385859 CTTA
1 CTTA
86385863 CTATCATTTC
Statistics
Matches: 361, Mismatches: 17, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
46 37 0.10
47 278 0.77
49 46 0.13
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:86388942 original size:24 final size:24
Alignment explanation
Indices: 86388897--86388943 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
86388887 TATATATTAA
* **
86388897 CAAAGTATCATTAAATTTCCAAGC
1 CAAAATATCATTAAATAACCAAGC
*
86388921 CAAAATATCATTATATAACCAAG
1 CAAAATATCATTAAATAACCAAG
86388944 TAAATTTACA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.47, C:0.19, G:0.06, T:0.28
Consensus pattern (24 bp):
CAAAATATCATTAAATAACCAAGC
Found at i:86389326 original size:41 final size:42
Alignment explanation
Indices: 86389262--86389344 Score: 107
Period size: 41 Copynumber: 2.0 Consensus size: 42
86389252 TCTTACATGT
* *
86389262 AATCACATATCGATGCCACTGTCCCAGACAGGGTCTCACACG
1 AATCAAATATCGATGCCACTGTCCCAAACAGGGTCTCACACG
* *
86389304 AATCAAATA-CGATGCCGA-TGTCCCAAACATGGTCTTACACG
1 AATCAAATATCGATGCC-ACTGTCCCAAACAGGGTCTCACACG
86389345 TAACCATATA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
41 27 0.75
42 9 0.25
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.20
Consensus pattern (42 bp):
AATCAAATATCGATGCCACTGTCCCAAACAGGGTCTCACACG
Found at i:86394019 original size:18 final size:17
Alignment explanation
Indices: 86393996--86394037 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
86393986 AGCCTAGAAT
*
86393996 CCCACACACCTGTGTGG
1 CCCACACACCTATGTGG
*
86394013 ACCCACACATCTATGTGG
1 -CCCACACACCTATGTGG
86394031 CCCACAC
1 CCCACAC
86394038 GACCCAATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.24, C:0.43, G:0.17, T:0.17
Consensus pattern (17 bp):
CCCACACACCTATGTGG
Found at i:86401957 original size:26 final size:26
Alignment explanation
Indices: 86401928--86402087 Score: 257
Period size: 26 Copynumber: 6.2 Consensus size: 26
86401918 TGGTACAAAT
86401928 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
86401954 TGATAATGGATTAAGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86401980 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
86402006 TGATAATGGATTAAGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86402032 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
86402058 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86402084 TGAT
1 TGAT
86402088 GGGCATTTCA
Statistics
Matches: 121, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 121 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:86401990 original size:52 final size:52
Alignment explanation
Indices: 86401928--86402087 Score: 293
Period size: 52 Copynumber: 3.1 Consensus size: 52
86401918 TGGTACAAAT
86401928 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAAGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAAGTAAATATTCCA
86401980 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAAGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAAGTAAATATTCCA
* * *
86402032 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAAGTAAATATTCCA
86402084 TGAT
1 TGAT
86402088 GGGCATTTCA
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 105 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAAGTAAATATTCCA
Found at i:86403853 original size:21 final size:20
Alignment explanation
Indices: 86403811--86403858 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
86403801 ATTCCCCACA
86403811 TGGAGTGTATGGTGGTACGGG
1 TGGAGTGTATGGTGGTA-GGG
86403832 TGGAGTGTAGTGGTTGGT-GGG
1 TGGAGTGTA-TGG-TGGTAGGG
*
86403853 TTGAGT
1 TGGAGT
86403859 AGTCTCCCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 17 0.71
22 3 0.12
23 4 0.17
ACGTcount: A:0.12, C:0.02, G:0.52, T:0.33
Consensus pattern (20 bp):
TGGAGTGTATGGTGGTAGGG
Found at i:86409056 original size:26 final size:26
Alignment explanation
Indices: 86409027--86409134 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
86409017 TGATACAAAT
86409027 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
86409053 TGATAATGGATTAAGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86409079 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
86409105 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86409131 TGAT
1 TGAT
86409135 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:86412623 original size:26 final size:26
Alignment explanation
Indices: 86412594--86412651 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
86412584 CCCGATATAT
86412594 GGCTCTTCATGAGCTTCCCT-ATTAAA
1 GGCTCTTCATGAGCTT-CCTAATTAAA
** *
86412620 GGCTCTTTGTGAGCTTCCTAATTAAT
1 GGCTCTTCATGAGCTTCCTAATTAAA
86412646 GGCTCT
1 GGCTCT
86412652 CTGAAGGTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 3 0.11
26 25 0.89
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.38
Consensus pattern (26 bp):
GGCTCTTCATGAGCTTCCTAATTAAA
Found at i:86415514 original size:46 final size:46
Alignment explanation
Indices: 86415438--86415656 Score: 151
Period size: 46 Copynumber: 4.7 Consensus size: 46
86415428 GGGGTAGGGT
* *
86415438 GCCGATGCCATATCCCAGATATAGTCTTACACTGACTATCATCTTGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACTATCATCTTG-AG
* *
86415486 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTAT-GTCTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGAC-TATCATCTTGAG
* * * * * *
86415532 GCCGACGCATGTCCCGGGCATGTCTTACACT-AGC-ACTCGTCTCGAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGA-CTA-TCATCTTGAG
* * * ** *
86415578 GCCGATTCCATGTCCCAGACATGGTCTTACA-TAGGCTCTCATAATGTG
1 GCCGA-TGCATGTCCCAGACAT-GTCTTACACT-GACTATCATCTTGAG
* * *
86415626 ACCGATGCATGACCCAAACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
86415657 AGCCCACAAT
Statistics
Matches: 134, Mismatches: 26, Indels: 23
0.73 0.14 0.13
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 65 0.49
47 42 0.31
48 24 0.18
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGACTATCATCTTGAG
Found at i:86419586 original size:17 final size:17
Alignment explanation
Indices: 86419536--86419593 Score: 64
Period size: 16 Copynumber: 3.2 Consensus size: 17
86419526 AGGTGAGGAG
86419536 TAAAAGTTTAGGGGGAAAA
1 TAAAAGTTTA-GGGG-AAA
*
86419555 TAAAAAGTTTTGGGG-AA
1 T-AAAAGTTTAGGGGAAA
86419572 TAAAAGTTTGAGGGGAAA
1 TAAAAGTTT-AGGGGAAA
86419590 TAAA
1 TAAA
86419594 TAGGGGGAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
16 8 0.24
17 7 0.21
18 6 0.18
19 5 0.15
20 8 0.24
ACGTcount: A:0.47, C:0.00, G:0.29, T:0.24
Consensus pattern (17 bp):
TAAAAGTTTAGGGGAAA
Found at i:86420024 original size:9 final size:9
Alignment explanation
Indices: 86420010--86420042 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
86420000 ATTCAAGTTG
86420010 ACTCGAATA
1 ACTCGAATA
*
86420019 ACTCGATTA
1 ACTCGAATA
86420028 ACTCGAATA
1 ACTCGAATA
86420037 ACTCGA
1 ACTCGA
86420043 TTCGTTTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.24
Consensus pattern (9 bp):
ACTCGAATA
Found at i:86420033 original size:18 final size:18
Alignment explanation
Indices: 86420010--86420044 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
86420000 ATTCAAGTTG
86420010 ACTCGAATAACTCGATTA
1 ACTCGAATAACTCGATTA
86420028 ACTCGAATAACTCGATT
1 ACTCGAATAACTCGATT
86420045 CGTTTAACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (18 bp):
ACTCGAATAACTCGATTA
Found at i:86422322 original size:22 final size:23
Alignment explanation
Indices: 86422276--86422329 Score: 74
Period size: 22 Copynumber: 2.4 Consensus size: 23
86422266 AATACCCTAA
86422276 ATAGTGTGTTAGGATGGTCAAAG
1 ATAGTGTGTTAGGATGGTCAAAG
* **
86422299 ATGGTGTGTT-GGATGGTCGGAG
1 ATAGTGTGTTAGGATGGTCAAAG
86422321 ATAGTGTGT
1 ATAGTGTGT
86422330 AGCGGATGGG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
22 18 0.67
23 9 0.33
ACGTcount: A:0.22, C:0.04, G:0.41, T:0.33
Consensus pattern (23 bp):
ATAGTGTGTTAGGATGGTCAAAG
Found at i:86423865 original size:19 final size:19
Alignment explanation
Indices: 86423841--86423938 Score: 137
Period size: 19 Copynumber: 5.2 Consensus size: 19
86423831 AATATTTAAG
86423841 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
86423860 GATATGCAATATTAGATAT
1 GATATGCAATCTTAGATAT
*
86423879 GATA--CAATCTCAGATAT
1 GATATGCAATCTTAGATAT
*
86423896 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
86423915 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
86423936 GAT
1 GAT
86423939 CTTGTAATCT
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
17 15 0.22
19 45 0.65
21 9 0.13
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:86423917 original size:36 final size:36
Alignment explanation
Indices: 86423847--86423918 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
86423837 TAAGGATATG
* *
86423847 CAATCTTAGATATGATATGCAATATTAGATATGATA
1 CAATCTCAGATATGATATGCAATACTAGATATGATA
*
86423883 CAATCTCAGATATGATATGCAATCCTAGATATGATA
1 CAATCTCAGATATGATATGCAATACTAGATATGATA
86423919 TGCAATCTTG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.33
Consensus pattern (36 bp):
CAATCTCAGATATGATATGCAATACTAGATATGATA
Found at i:86430923 original size:20 final size:19
Alignment explanation
Indices: 86430886--86430942 Score: 82
Period size: 19 Copynumber: 3.1 Consensus size: 19
86430876 CTTCTATTTC
86430886 AAAG-AAAAAAAAGG-AAA
1 AAAGAAAAAAAAAGGAAAA
86430903 AAAGAAAAGAAAAAGGAAAA
1 AAAGAAAA-AAAAAGGAAAA
*
86430923 AAAGAAAAAAAAAAGAAAA
1 AAAGAAAAAAAAAGGAAAA
86430942 A
1 A
86430943 TGGAGAGGCC
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
17 4 0.11
18 3 0.08
19 18 0.50
20 11 0.31
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (19 bp):
AAAGAAAAAAAAAGGAAAA
Found at i:86430942 original size:11 final size:11
Alignment explanation
Indices: 86430900--86430942 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
86430890 AAAAAAAAGG
86430900 AAAAAAGAAAA
1 AAAAAAGAAAA
* *
86430911 GAAAAAG--GA
1 AAAAAAGAAAA
86430920 AAAAAAGAAAA
1 AAAAAAGAAAA
86430931 AAAAAAGAAAA
1 AAAAAAGAAAA
86430942 A
1 A
86430943 TGGAGAGGCC
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
9 7 0.27
11 19 0.73
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAAA
Found at i:86432028 original size:84 final size:84
Alignment explanation
Indices: 86431887--86432915 Score: 1524
Period size: 84 Copynumber: 12.3 Consensus size: 84
86431877 GAATTCAGCA
86431887 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
86431952 GGAGCAGATCGAAGACTCG
66 GGAGCAGATCGAAGACTCG
*
86431971 CCTTAATCCCTTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
* *
86432036 GGAACAGATCAAAGACTCG
66 GGAGCAGATCGAAGACTCG
* * * * *
86432055 CTTTAATCCCCTAAGCAGTAGGGTAACAGGTTAATTTTGCAGATGTTATCTCCTTAAGTAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
86432120 GGAGCAGATCGAAGACTCG
66 GGAGCAGATCGAAGACTCG
* * ** *
86432139 CCTTAATCCCCTAAGCGGTAGGGTAATAGGTTAAATTTATAGATCTTATCTCCCTAAGCAATAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
86432204 GGAGCAGATCGAAGACTCG
66 GGAGCAGATCGAAGACTCG
* * * *
86432223 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTT-CA----CAGATCTTATCTCCCTATGTAGTAGC
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
86432283 GGAGCAGATCGACGACGACTCG
66 GGAGCAGATCGA--A-GACTCG
*
86432305 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
* *
86432370 GGAGCAAATCAAAGACTCG
66 GGAGCAGATCGAAGACTCG
*
86432389 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAACAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
86432454 GGAGCAGATCGAAGACTCG
66 GGAGCAGATCGAAGACTCG
* *
86432473 CCTTAATCCCCTAAACAGTAGGGTAATAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
*
86432538 GGAGCAGATCGAAGACTCA
66 GGAGCAGATCGAAGACTCG
* * *
86432557 CCTTAATCCCCTAAGCTGTAGGGTAACAGGTTAAATTTGGAGATCTTATCTCCCTAAGTAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
86432622 GGAGCAGATCGAAGACTCG
66 GGAGCAGATCGAAGACTCG
* *
86432641 CCTTAATCCCCTAAGCAGTAGGGTAACAGG-----TTCGCAGATCTTATCTCCCTAAGCAGTAGC
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
* * *
86432701 AGAGCAGATTGACGACGACTCA
66 GGAGCAGA-T--CGAAGACTCG
** *
86432723 CCTTAATCCCCTAAAAAGTAGGGTAATAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
*
86432788 GGAGCAGATCGAAGACCCG
66 GGAGCAGATCGAAGACTCG
* * *
86432807 CCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTGTAGATCTTA--TCCCTAAGCAGTAGC
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
*
86432870 GGAGCAGATCGAAGACGATGCA
66 GGAGCAGATCGAAGAC--T-CG
*
86432892 CCTTAACCCCCTAAGCAGTAGGGT
1 CCTTAATCCCCTAAGCAGTAGGGT
86432916 CCAAGATGAT
Statistics
Matches: 851, Mismatches: 75, Indels: 37
0.88 0.08 0.04
Matches are distributed among these distances:
79 66 0.08
80 1 0.00
81 1 0.00
82 103 0.12
83 2 0.00
84 585 0.69
85 24 0.03
86 1 0.00
87 68 0.08
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (84 bp):
CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
GGAGCAGATCGAAGACTCG
Found at i:86432580 original size:334 final size:333
Alignment explanation
Indices: 86431885--86432915 Score: 1531
Period size: 334 Copynumber: 3.1 Consensus size: 333
86431875 CAGAATTCAG
*
86431885 CACCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CACCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA--T-CAGATCTTATCTCCCTAAGTAGTA
*
86431950 GTGGAGCAGATCGAAGACTCGCCTTAATCCCTTAAGCAGTAGGGTAACAGGTTAAATTTGCAGAT
63 GTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGAT
* * *
86432015 CTTATCTCCCTAAGCAGTAGTGGAACAGATCAAAGACTCGCTTTAATCCCCTAAGCAGTAGGGTA
128 CTTATCTCCCTAAGCAGTAGTGGAGCAAATCAAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTA
* * * *
86432080 ACAGGTTAATTTTGCAGATGTTATCTCCTTAAGTAGTAGTGGAGCAGATCGAAGACTCGCCTTAA
193 ACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAA
* * *
86432145 TCCCCTAAGCGGTAGGGTAATAGGTTAAATTTATAGATCTTATCTCCCTAAGCAATAGTGGAGCA
258 TCCCCTAAGCAGTAGGGTAATAGGTTAAATTTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
86432210 GATCGAAGACT
323 GATCGAAGACT
* * * *
86432221 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTT-CA-CAGATCTTATCTCCCTATGTAGTAGCG
1 CACCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATCAGATCTTATCTCCCTAAGTAGTAGTG
*
86432284 GAGCAGATCGACGACGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGAT
66 GAGCAGATCGA--A-GACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGAT
86432349 CTTATCTCCCTAAGCAGTAGTGGAGCAAATCAAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTA
128 CTTATCTCCCTAAGCAGTAGTGGAGCAAATCAAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTA
*
86432414 ACAGGTTAAATTTGCAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACTCGCCTTAA
193 ACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAA
* *
86432479 TCCCCTAAACAGTAGGGTAATAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
258 TCCCCTAAGCAGTAGGGTAATAGGTTAAATTTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
86432544 GATCGAAGACT
323 GATCGAAGACT
* *
86432555 CACCTTAATCCCCTAAGCTGTAGGGTAACAGGTTAAATTTGGAGATCTTATCTCCCTAAGTAGTA
1 CACCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA--T-CAGATCTTATCTCCCTAAGTAGTA
*
86432620 GTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGG-----TTCGCAGAT
63 GTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGAT
** * * * * **
86432680 CTTATCTCCCTAAGCAGTAGCAGAGCAGATTGACGACGACTCACCTTAATCCCCTAAAAAGTAGG
128 CTTATCTCCCTAAGCAGTAGTGGAGCA-AAT--CAAAGACTCGCCTTAATCCCCTAAGCAGTAGG
* *
86432745 GTAATAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCGCCT
190 GTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCT
* * *
86432810 TAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTGTAGATCTTA--TCCCTAAGCAGTAGCGGA
255 TAATCCCCTAAGCAGTAGGGTAATAGGTTAAATTTGTAGATCTTATCTCCCTAAGCAGTAGTGGA
86432873 GCAGATCGAAGACGAT
320 GCAGATCGAAGAC--T
*
86432889 GCACCTTAACCCCCTAAGCAGTAGGGT
1 -CACCTTAATCCCCTAAGCAGTAGGGT
86432916 CCAAGATGAT
Statistics
Matches: 635, Mismatches: 46, Indels: 29
0.89 0.06 0.04
Matches are distributed among these distances:
331 67 0.11
332 32 0.05
333 1 0.00
334 404 0.64
335 26 0.04
336 69 0.11
337 1 0.00
339 35 0.06
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (333 bp):
CACCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATCAGATCTTATCTCCCTAAGTAGTAGTG
GAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTT
ATCTCCCTAAGCAGTAGTGGAGCAAATCAAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACA
GGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCC
CCTAAGCAGTAGGGTAATAGGTTAAATTTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
CGAAGACT
Found at i:86432664 original size:418 final size:418
Alignment explanation
Indices: 86431885--86432915 Score: 1697
Period size: 418 Copynumber: 2.5 Consensus size: 418
86431875 CAGAATTCAG
86431885 CACCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CACCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
86431950 GTGGAGCAGATCGAAGACTCGCCTTAATCCCTTAAGCAGTAGGGTAACAGGTTAAATTTGCAGAT
66 GTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGAT
* * *
86432015 CTTATCTCCCTAAGCAGTAGTGGAACAGATCAAAGACTCGCTTTAATCCCCTAAGCAGTAGGGTA
131 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTA
* * * * *
86432080 ACAGGTTAATTTTGCAGATGTTATCTCCTTAAGTAGTAGTGGAGCAGATCGAAGACTCGCCTTAA
196 ACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCACCTTAA
* *
86432145 TCCCCTAAGCGGTAGGGTAATAGGTTAAATTTATAGATCTTATCTCCCTAAGCAATAGTGGAGCA
261 TCCCCTAAGCGGTAGGGTAACAGGTTAAATTTAGAGATCTTATCTCCCTAAGCAATAGTGGAGCA
*
86432210 GATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTCACAGATCTTATCTCCCTAT
326 GATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTCACAGATCTTATCTCCCTAA
* *
86432275 GTAGTAGCGGAGCAGATCGACGACGACT
391 GCAGTAGCAGAGCAGATCGACGACGACT
* *
86432303 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGTA
1 CACCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* *
86432368 GTGGAGCAAATCAAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGAT
66 GTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGAT
* *
86432433 CTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAACAGTAGGGTA
131 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTA
*
86432498 ATAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCACCTTAA
196 ACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCACCTTAA
* * * *
86432563 TCCCCTAAGCTGTAGGGTAACAGGTTAAATTTGGAGATCTTATCTCCCTAAGTAGTAGTGGAGCA
261 TCCCCTAAGCGGTAGGGTAACAGGTTAAATTTAGAGATCTTATCTCCCTAAGCAATAGTGGAGCA
*
86432628 GATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTCGCAGATCTTATCTCCCTAA
326 GATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTCACAGATCTTATCTCCCTAA
*
86432693 GCAGTAGCAGAGCAGATTGACGACGACT
391 GCAGTAGCAGAGCAGATCGACGACGACT
** *
86432721 CACCTTAATCCCCTAAAAAGTAGGGTAATAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CACCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* * *
86432786 GTGGAGCAGATCGAAGACCCGCCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTGTAGAT
66 GTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGAT
* * *
86432851 CTTA--TCCCTAAGCAGTAGCGGAGCAGATCGAAGACGATGCACCTTAACCCCCTAAGCAGTAGG
131 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAC--T-CGCCTTAATCCCCTAAGCAGTAGG
86432914 GT
193 GT
86432916 CCAAGATGAT
Statistics
Matches: 568, Mismatches: 42, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
416 29 0.05
418 516 0.91
419 23 0.04
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (418 bp):
CACCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGAT
CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTA
ACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCACCTTAA
TCCCCTAAGCGGTAGGGTAACAGGTTAAATTTAGAGATCTTATCTCCCTAAGCAATAGTGGAGCA
GATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTCACAGATCTTATCTCCCTAA
GCAGTAGCAGAGCAGATCGACGACGACT
Found at i:86433680 original size:19 final size:19
Alignment explanation
Indices: 86433656--86433734 Score: 99
Period size: 19 Copynumber: 4.2 Consensus size: 19
86433646 AATCTTTAAG
86433656 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
86433675 GATATGCAATATTAAATAT
1 GATATGCAATCTTAGATAT
*
86433694 GATA--CAATCTTATATAT
1 GATATGCAATCTTAGATAT
86433711 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
86433732 GAT
1 GAT
86433735 CTTGTAATCT
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
17 15 0.29
19 28 0.55
21 8 0.16
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:86433702 original size:36 final size:38
Alignment explanation
Indices: 86433662--86433734 Score: 114
Period size: 36 Copynumber: 2.0 Consensus size: 38
86433652 TAAGGATATG
86433662 CAATCTTAGATATGATATGCAATATT-AA-ATATGATA
1 CAATCTTAGATATGATATGCAATATTGAAGATATGATA
* *
86433698 CAATCTTATATATGATATGCAATCTTGAAGATATGAT
1 CAATCTTAGATATGATATGCAATATTGAAGATATGAT
86433735 CTTGTAATCT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
36 24 0.73
37 2 0.06
38 7 0.21
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (38 bp):
CAATCTTAGATATGATATGCAATATTGAAGATATGATA
Found at i:86435564 original size:44 final size:44
Alignment explanation
Indices: 86435500--86435588 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
86435490 CAGTAGTGCC
*
86435500 ATGTATGTCTTCTTATAAAACAAACTAGGTTATCTTTTCCAATA
1 ATGTATGTCTTCTTACAAAACAAACTAGGTTATCTTTTCCAATA
86435544 ATGTATGTCTTCTTACAAAACAAACTAGGTTATCTTTTCCAATA
1 ATGTATGTCTTCTTACAAAACAAACTAGGTTATCTTTTCCAATA
86435588 A
1 A
86435589 GTAAAACTCA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.35, C:0.17, G:0.09, T:0.39
Consensus pattern (44 bp):
ATGTATGTCTTCTTACAAAACAAACTAGGTTATCTTTTCCAATA
Found at i:86436816 original size:26 final size:26
Alignment explanation
Indices: 86436780--86436832 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
86436770 AGAGGGAGTG
*
86436780 TTGAAGAGATAATCATCAA-TTAGTTA
1 TTGAAGAGATAACCAT-AAGTTAGTTA
*
86436806 TTGAATAGATAACCATAAGTTAGTTA
1 TTGAAGAGATAACCATAAGTTAGTTA
86436832 T
1 T
86436833 AAATGCATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.42, C:0.08, G:0.15, T:0.36
Consensus pattern (26 bp):
TTGAAGAGATAACCATAAGTTAGTTA
Found at i:86440704 original size:18 final size:18
Alignment explanation
Indices: 86440652--86440705 Score: 54
Period size: 21 Copynumber: 2.8 Consensus size: 18
86440642 ATATAGTTTC
* *
86440652 TAATTTAATTTTAATTAT
1 TAATTAAATTTAAATTAT
*
86440670 TAATTAATGAATGTAAATTAT
1 TAATT-A--AATTTAAATTAT
86440691 TAATTAAATTTAAAT
1 TAATTAAATTTAAAT
86440706 ATTGTGACCA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
18 13 0.45
20 1 0.03
21 15 0.52
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (18 bp):
TAATTAAATTTAAATTAT
Found at i:86441686 original size:7 final size:7
Alignment explanation
Indices: 86441674--86441762 Score: 52
Period size: 7 Copynumber: 12.7 Consensus size: 7
86441664 GTAATATATA
86441674 TAGGGTT
1 TAGGGTT
86441681 TAGGGTT
1 TAGGGTT
* *
86441688 TATGGTG
1 TAGGGTT
**
86441695 TATAGTT
1 TAGGGTT
86441702 TAGGGTT
1 TAGGGTT
* *
86441709 TATGATT
1 TAGGGTT
* *
86441716 TAAGATT
1 TAGGGTT
* *
86441723 TAGTGTA
1 TAGGGTT
**
86441730 TATAGTT
1 TAGGGTT
86441737 TAGGGTT
1 TAGGGTT
*
86441744 TAGGCTT
1 TAGGGTT
*
86441751 TAGGATT
1 TAGGGTT
86441758 TAGGG
1 TAGGG
86441763 ATAAAATTCA
Statistics
Matches: 61, Mismatches: 21, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
7 61 1.00
ACGTcount: A:0.22, C:0.01, G:0.31, T:0.45
Consensus pattern (7 bp):
TAGGGTT
Found at i:86442220 original size:124 final size:122
Alignment explanation
Indices: 86442049--86442288 Score: 275
Period size: 124 Copynumber: 1.9 Consensus size: 122
86442039 CGATGCCGTT
* * * * *
86442049 TCTTTAGTGGCATTAGCGGCGCTAGGCAAAAAATGCTGCAATAGATCGAGCATTAACGGCGCT-T
1 TCTTTAATGGCATTAGCGGCGCTAGGCAAAAAACGCCGCAACAGATCGACCATTAACGGCGCTAT
86442113 GGTAAAAAACACCGCAAAAAACAAATTACTTTAAATAAAACAACGCCGTTTTAAGTTGCA
66 -G-AAAAAACACCGCAAAAAACAAATTACTTTAAAT-AAACAACGCCGTTTTAAGTTGCA
* * ** **
86442173 TCTTTAATGGCTTTAGCGGCGCTATGTGAAAAACGCCGCAACAGATCGACCATTAGTGGCGCTAC
1 TCTTTAATGGCATTAGCGGCGCTAGGCAAAAAACGCCGCAACAGATCGACCATTAACGGCGCTA-
** ** * **
86442238 TGAAAAAATGCCGCAAAAAACATTTTACTTTAACTAAATGACGCCGTTTTA
65 TGAAAAAACACCGCAAAAAACAAATTACTTTAAATAAACAACGCCGTTTTA
86442289 GGTAGCGTCC
Statistics
Matches: 96, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
123 14 0.15
124 80 0.83
125 1 0.01
126 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.25
Consensus pattern (122 bp):
TCTTTAATGGCATTAGCGGCGCTAGGCAAAAAACGCCGCAACAGATCGACCATTAACGGCGCTAT
GAAAAAACACCGCAAAAAACAAATTACTTTAAATAAACAACGCCGTTTTAAGTTGCA
Found at i:86445249 original size:25 final size:25
Alignment explanation
Indices: 86445215--86445290 Score: 91
Period size: 25 Copynumber: 3.0 Consensus size: 25
86445205 TGAAGTATTA
86445215 TTTTG-ATTTGTTGTTTTTGGTTGG
1 TTTTGTATTTGTTGTTTTTGGTTGG
* *
86445239 TTTTGTATTTGCTGCTTTTGGTTGG
1 TTTTGTATTTGTTGTTTTTGGTTGG
*
86445264 ATTTGTATTTGTTATTGTTTTTGGTTG
1 TTTTGTATTTG---TTGTTTTTGGTTG
86445291 TTACAAGAAG
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
24 5 0.12
25 27 0.63
28 11 0.26
ACGTcount: A:0.07, C:0.03, G:0.26, T:0.64
Consensus pattern (25 bp):
TTTTGTATTTGTTGTTTTTGGTTGG
Found at i:86446308 original size:15 final size:17
Alignment explanation
Indices: 86446288--86446324 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
86446278 TATTTATTCC
86446288 TATATT-TA-GCATATA
1 TATATTATATGCATATA
*
86446303 TATATTATATGTATATA
1 TATATTATATGCATATA
86446320 TATAT
1 TATAT
86446325 GATTAGTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 6 0.32
16 2 0.11
17 11 0.58
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (17 bp):
TATATTATATGCATATA
Found at i:86458721 original size:13 final size:14
Alignment explanation
Indices: 86458703--86458732 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
86458693 AGAGACAAAG
86458703 AAAGAAA-GAAAAA
1 AAAGAAAGGAAAAA
86458716 AAAGAAAGGAAAAA
1 AAAGAAAGGAAAAA
86458730 AAA
1 AAA
86458733 AGAGAGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAGAAAGGAAAAA
Found at i:86458721 original size:17 final size:17
Alignment explanation
Indices: 86458699--86458748 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 17
86458689 GGAAAGAGAC
86458699 AAAGAAA-GAAAGAAAAA
1 AAAGAAAGGAAA-AAAAA
86458716 AAAGAAAGGAAAAAAAA
1 AAAGAAAGGAAAAAAAA
86458733 AGAGAGAAATGGAAAA
1 A-A-AGAAA-GGAAAA
86458749 GCAGGGAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
17 13 0.45
18 5 0.17
19 5 0.17
20 6 0.21
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (17 bp):
AAAGAAAGGAAAAAAAA
Found at i:86458741 original size:14 final size:14
Alignment explanation
Indices: 86458703--86458741 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
86458693 AGAGACAAAG
86458703 AAAGAAAG-AAAAA
1 AAAGAAAGAAAAAA
86458716 AAAGAAAGGAAAAAA
1 AAAGAAA-GAAAAAA
*
86458731 AAAGAGAGAAA
1 AAAGAAAGAAA
86458742 TGGAAAAGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 7 0.30
14 5 0.22
15 11 0.48
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (14 bp):
AAAGAAAGAAAAAA
Found at i:86469521 original size:15 final size:15
Alignment explanation
Indices: 86469466--86469522 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
86469456 TTTATACTAC
86469466 AAAATATTTATTATT
1 AAAATATTTATTATT
* * *
86469481 AATATACTTATAATTGTA
1 AAAATA-TT-T-ATTATT
86469499 ATAAATATTTATTATT
1 A-AAATATTTATTATT
86469515 AAAATATT
1 AAAATATT
86469523 AATATTGAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
15 12 0.38
16 7 0.22
17 2 0.06
18 7 0.22
19 4 0.12
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (15 bp):
AAAATATTTATTATT
Done.