Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 27 of 290
Found at i:8738520 original size:133 final size:133
Alignment explanation
Indices: 8738253--8738693 Score: 669
Period size: 133 Copynumber: 3.3 Consensus size: 133
8738243 TCGGTCTGCT
** * *
8738253 CCACTGCAACTTC-GAGGAGACAAGATCTACAATCTTCAGCCTGTTACC-CTACGAC-TTGGGGA
1 CCACTGCAACTTCAG-GGAGACAAGATCTACAATCTTCAGCCTACT-CCACTACAACTTTAGGGA
* * * *
8738315 GTTA--A-GGCTTGCTTAAATCTGCTTCACTGCAACTTCAGGAAACCAAGATTTGTCGTCTTCAA
64 GCTAGGATGG-TGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCAA
*
8738377 TTTGCT
128 TTTGCC
*
8738383 CCACTACAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGC
1 CCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGC
* * **
8738448 TAGGGTGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCTTCTTTGATTT
66 TAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCAATTT
8738513 GCC
131 GCC
*
8738516 CCACTTCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGC
1 CCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGC
8738581 TAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCAATTT
66 TAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCAATTT
8738646 GCC
131 GCC
*
8738649 CCACTGCAACTTCAGGGAGACAAGATCTACAATATTCAGCCTACT
1 CCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACT
8738694 TGTAATGGCC
Statistics
Matches: 284, Mismatches: 21, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
129 2 0.01
130 46 0.16
131 10 0.04
133 224 0.79
134 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (133 bp):
CCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGC
TAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCAATTT
GCC
Found at i:8741912 original size:133 final size:133
Alignment explanation
Indices: 8741674--8741934 Score: 432
Period size: 133 Copynumber: 2.0 Consensus size: 133
8741664 GGGTATTACA
*
8741674 CTACTCCAATACAACTTTAGGGAGCTAGGACGGTGGCTTAAATCTACTTCGCTGCAACTTCAGGA
1 CTACTCCAATACAACTTTAGGGAGCTAGGACGGTGGCTTAAATCTACTTCGCTGCAACTTCAAGA
* * *
8741739 ATCCAAGATTTGTCGTCTTCGATTAGCCCCACTGCCACTTCAGGGAGACAAGATCTACAATCTTC
66 AGCCAAGATTCGTCGTCTTCGATTAGCCCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTC
8741804 AGC
131 AGC
* * * *
8741807 CTACTCTAATACAACTTTAGGGAGTTAGGATGGTGGCTTAAATCTGCTTCGCTGCAACTTCAAGA
1 CTACTCCAATACAACTTTAGGGAGCTAGGACGGTGGCTTAAATCTACTTCGCTGCAACTTCAAGA
* *
8741872 AGCCAAGATTCGTTGTCTTCGATTTGCCCCACTGCAACTTCAGGGAGACAAGATCTACAATCT
66 AGCCAAGATTCGTCGTCTTCGATTAGCCCCACTGCAACTTCAGGGAGACAAGATCTACAATCT
8741935 GTTTCATAGG
Statistics
Matches: 118, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
133 118 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (133 bp):
CTACTCCAATACAACTTTAGGGAGCTAGGACGGTGGCTTAAATCTACTTCGCTGCAACTTCAAGA
AGCCAAGATTCGTCGTCTTCGATTAGCCCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTC
AGC
Found at i:8743184 original size:12 final size:12
Alignment explanation
Indices: 8743159--8743209 Score: 66
Period size: 13 Copynumber: 3.9 Consensus size: 12
8743149 GCCTCTCCTT
8743159 TTCTTTTCTTTTC
1 TTCTTTT-TTTTC
8743172 TTCTTTTTTTTC
1 TTCTTTTTTTTC
8743184 TTCTTTCTTTCTTTC
1 TTC-TT-TTT-TTTC
8743199 TTCTTTTTTTT
1 TTCTTTTTTTT
8743210 GAAGGTCTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
12 11 0.31
13 12 0.34
14 5 0.14
15 7 0.20
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (12 bp):
TTCTTTTTTTTC
Found at i:8743195 original size:20 final size:18
Alignment explanation
Indices: 8743156--8743209 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 18
8743146 TTGGCCTCTC
8743156 CTTTTCTTTTCTT-TTCTT
1 CTTTTCTTTTCTTCTT-TT
8743174 CTTTT-TTTTCTTC-TTT
1 CTTTTCTTTTCTTCTTTT
8743190 C-TTTC-TTTCTTCTTTT
1 CTTTTCTTTTCTTCTTTT
8743206 -TTTT
1 CTTTT
8743210 GAAGGTCTCA
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
15 10 0.31
16 9 0.28
17 8 0.25
18 5 0.16
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (18 bp):
CTTTTCTTTTCTTCTTTT
Found at i:8745768 original size:19 final size:19
Alignment explanation
Indices: 8745746--8745802 Score: 105
Period size: 19 Copynumber: 3.0 Consensus size: 19
8745736 AAGTAAAACA
*
8745746 ATGCAATGCAATGCAAATG
1 ATGCAATACAATGCAAATG
8745765 ATGCAATACAATGCAAATG
1 ATGCAATACAATGCAAATG
8745784 ATGCAATACAATGCAAATG
1 ATGCAATACAATGCAAATG
8745803 CATGGGATGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 37 1.00
ACGTcount: A:0.46, C:0.16, G:0.18, T:0.21
Consensus pattern (19 bp):
ATGCAATACAATGCAAATG
Found at i:8747569 original size:132 final size:132
Alignment explanation
Indices: 8747360--8747640 Score: 329
Period size: 132 Copynumber: 2.1 Consensus size: 132
8747350 CGGTTCTTCA
* * * ** *
8747360 AATTTCTAAACATCGAGCATTGCCTTATTTTTTAGAGTTTTTAAGAAACATGAGGGAAATTCCAA
1 AATTGCTAAACATCGAACATTACCTTATTTTGGAGAGTTTTTAAGAAACATAAGGGAAATTCCAA
* **
8747425 AGGGGATGTTCGATTATTTGGAACCAACA-G-GAAATTGCAACCCAACACGATAGGGCACAATTC
66 AAGGGACCTTCGATTATTTGGAA-CAA-ATGAGAAATTGCAACCCAACACGATAGGGCACAA-TC
8747488 CC-CG
128 CCGCG
* *
8747492 AATTGCTAAACATCGAACATTACCTTCGTTTTGGAGAGTTTTT-AGAAAACATAAGTGAAATT-C
1 AATTGCTAAACATCGAACATTACCTT-ATTTTGGAGAGTTTTTAAG-AAACATAAGGGAAATTCC
* * * *
8747555 AAAAGGGACCTTCGATTATTTTGAACAAATGAGAAATTGCCACCTAACACGTTAGGGCACAATCC
64 AAAAGGGACCTTCGATTATTTGGAACAAATGAGAAATTGCAACCCAACACGATAGGGCACAATCC
8747620 CGCG
129 CGCG
* *
8747624 AATTGCCAAATATCGAA
1 AATTGCTAAACATCGAA
8747641 TATCGCTTCT
Statistics
Matches: 127, Mismatches: 17, Indels: 10
0.82 0.11 0.06
Matches are distributed among these distances:
130 1 0.01
131 8 0.06
132 91 0.72
133 27 0.21
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.27
Consensus pattern (132 bp):
AATTGCTAAACATCGAACATTACCTTATTTTGGAGAGTTTTTAAGAAACATAAGGGAAATTCCAA
AAGGGACCTTCGATTATTTGGAACAAATGAGAAATTGCAACCCAACACGATAGGGCACAATCCCG
CG
Found at i:8748683 original size:24 final size:24
Alignment explanation
Indices: 8748632--8748874 Score: 335
Period size: 24 Copynumber: 10.0 Consensus size: 24
8748622 ACTTTATCAT
* *
8748632 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* * *
8748657 ATAACTAGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTG
* *
8748681 ATAACTGGGGCATAAGCTCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTG
8748705 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
* *
8748729 ATAACTGGGGCATAAACCATTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
8748753 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
8748777 ATAACTGGGGCATAAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTG
8748803 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
8748827 ATAACTGGGGCATAAGGCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
8748851 ATAACTGGGGCAGAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
8748875 CACTTCCTTC
Statistics
Matches: 198, Mismatches: 17, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
24 164 0.83
25 11 0.06
26 23 0.12
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:8748840 original size:98 final size:96
Alignment explanation
Indices: 8748651--8748874 Score: 351
Period size: 98 Copynumber: 2.3 Consensus size: 96
8748641 GGCCTAGCCT
* * *
8748651 CTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCTCTTTTAATAACTGGGGC
1 CTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCTCTTTTAATAACTGGGGC
8748716 ATAAGCCCTTTTGATAACTGGGGCATAA-AC
66 ATAAGCCCTTTTGATAACTGGGGCATAAGAC
* *
8748746 CATTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTTTAATAACTGG
1 C-TTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAG--CTCTTTTAATAACTGG
*
8748811 GGCATAAGCCCTTTTGATAACTGGGGCATAAGGC
63 GGCATAAGCCCTTTTGATAACTGGGGCATAAGAC
*
8748845 CTTTTGATAACTGGGGCAGAAGCCCTTTTG
1 CTTTTGATAACTGGGGCAAAAGCCCTTTTG
8748875 CACTTCCTTC
Statistics
Matches: 118, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
95 1 0.01
96 41 0.35
98 74 0.63
99 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (96 bp):
CTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCTCTTTTAATAACTGGGGC
ATAAGCCCTTTTGATAACTGGGGCATAAGAC
Found at i:8748948 original size:20 final size:20
Alignment explanation
Indices: 8748923--8748969 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
8748913 TTATGAATAC
8748923 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
8748943 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
8748963 AACATGT
1 ATCATGT
8748970 TTATCAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:8750529 original size:34 final size:34
Alignment explanation
Indices: 8750486--8750559 Score: 148
Period size: 34 Copynumber: 2.2 Consensus size: 34
8750476 CTCCACATGT
8750486 CACCTTTTTAGGAGCTTAGTGGCGTCACCCTTGC
1 CACCTTTTTAGGAGCTTAGTGGCGTCACCCTTGC
8750520 CACCTTTTTAGGAGCTTAGTGGCGTCACCCTTGC
1 CACCTTTTTAGGAGCTTAGTGGCGTCACCCTTGC
8750554 CACCTT
1 CACCTT
8750560 ACTAAAGCTC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.15, C:0.31, G:0.22, T:0.32
Consensus pattern (34 bp):
CACCTTTTTAGGAGCTTAGTGGCGTCACCCTTGC
Found at i:8759141 original size:16 final size:16
Alignment explanation
Indices: 8759120--8759176 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
8759110 TTCTTATAAC
8759120 TTTTATAATTTTGAAT
1 TTTTATAATTTTGAAT
**
8759136 TTTTATTTTTTTGAAT
1 TTTTATAATTTTGAAT
*
8759152 ATTTTATCAATTTTAAAT
1 -TTTTAT-AATTTTGAAT
8759170 TATTTAT
1 T-TTTAT
8759177 TGATATAACA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
16 14 0.42
17 7 0.21
18 12 0.36
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.65
Consensus pattern (16 bp):
TTTTATAATTTTGAAT
Found at i:8760102 original size:28 final size:28
Alignment explanation
Indices: 8760065--8760161 Score: 131
Period size: 28 Copynumber: 3.4 Consensus size: 28
8760055 TACAGTAGTT
8760065 TCTGAAAAAAATAAATTAGAGAAGACGTA
1 TCTG-AAAAAATAAATTAGAGAAGACGTA
*
8760094 TCTGAAAAAATATATTAGAGAAGACGTA
1 TCTGAAAAAATAAATTAGAGAAGACGTA
* * * *
8760122 TCTGAAAAAATAATTTTGAGAAGATGTT
1 TCTGAAAAAATAAATTAGAGAAGACGTA
*
8760150 TCTGAACAAATA
1 TCTGAAAAAATA
8760162 GTGTCAAAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
28 57 0.93
29 4 0.07
ACGTcount: A:0.49, C:0.07, G:0.16, T:0.27
Consensus pattern (28 bp):
TCTGAAAAAATAAATTAGAGAAGACGTA
Found at i:8760258 original size:126 final size:126
Alignment explanation
Indices: 8760122--8760462 Score: 565
Period size: 126 Copynumber: 2.7 Consensus size: 126
8760112 AGAAGACGTA
8760122 TCTGAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGTAGGAT
1 TCTGAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGTAGGAT
* *
8760187 GCACTGTCAGCAAAAGTACTGAAAAAAGCTCCTACATGGAAGCTTTTTTTCTACAATAGTT
66 GCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACATGGAAGCTCTTTTTCTACAATAGTT
* *
8760248 TCTGAAAAAATAATTTTGAGAAGATATTTCTGAACAAATAGTGTTAAAAACGCTTCAAGTAGGAT
1 TCTGAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGTAGGAT
* * * * *
8760313 GCATTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTATAGTAGTT
66 GCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACATGGAAGCTCTTTTTCTACAATAGTT
* * * *
8760374 TCTAAAAAAATAATTTTGAAAAGATGTTTCTGAACAAATAGTGTCAACAACGCTTCAAGCAGGAT
1 TCTGAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGTAGGAT
8760439 GCACTGTCAGCAAAAGTACTGAAA
66 GCACTGTCAGCAAAAGTACTGAAA
8760463 CACTTCAAGC
Statistics
Matches: 199, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
126 199 1.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (126 bp):
TCTGAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGTAGGAT
GCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACATGGAAGCTCTTTTTCTACAATAGTT
Found at i:8760480 original size:39 final size:39
Alignment explanation
Indices: 8760426--8760501 Score: 152
Period size: 39 Copynumber: 1.9 Consensus size: 39
8760416 GTCAACAACG
8760426 CTTCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAACA
1 CTTCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAACA
8760465 CTTCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAA
1 CTTCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAA
8760502 AAAGCTCCCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.18
Consensus pattern (39 bp):
CTTCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAACA
Found at i:8762351 original size:46 final size:46
Alignment explanation
Indices: 8762291--8762650 Score: 427
Period size: 46 Copynumber: 7.8 Consensus size: 46
8762281 TTTGACATGA
* * ** *
8762291 TGCCATAGTGTCTTTCAAATATGGTCTTACTCATTTTC-TGTCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGTCACGT
** * * *
8762337 TGCCATGGTATCTTTCAACCATGGTCTTGTTTATTTCATGTTACAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
* * ** *
8762383 TGCCATGGTATCTTTCAACCATGGTCTTATTTA-TTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
** *
8762428 TGCCATGGTATCTTTCAACCATGGTCTTGTTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
* * *
8762474 TGCCATAGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
* * * *
8762520 TGCCATGGTTTCTTTCAACCATGGTCTTACACATTTCATATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
* * * *
8762566 TGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
*
8762612 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
8762651 TTCAGAAAGC
Statistics
Matches: 279, Mismatches: 33, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
45 41 0.15
46 238 0.85
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
Found at i:8765921 original size:13 final size:13
Alignment explanation
Indices: 8765899--8765931 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
8765889 TGCAAGCCAT
*
8765899 TGGTAGAAATTGA
1 TGGTACAAATTGA
8765912 TGGTACAAATTGA
1 TGGTACAAATTGA
8765925 TGGTACA
1 TGGTACA
8765932 TTTATATTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.30
Consensus pattern (13 bp):
TGGTACAAATTGA
Found at i:8767929 original size:30 final size:30
Alignment explanation
Indices: 8767855--8767938 Score: 105
Period size: 30 Copynumber: 2.8 Consensus size: 30
8767845 GCCCGATGAC
8767855 TGTGTGAGCGCTGTTGATGGGCCTAGTGAT
1 TGTGTGAGCGCTGTTGATGGGCCTAGTGAT
* * * * *
8767885 TGTATGGGCACTGTTGATGGGGCTGGTGAT
1 TGTGTGAGCGCTGTTGATGGGCCTAGTGAT
* *
8767915 TGTGTGAGCGCTGTTAATGAGCCT
1 TGTGTGAGCGCTGTTGATGGGCCT
8767939 GTGTCGTCAT
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.14, C:0.13, G:0.39, T:0.33
Consensus pattern (30 bp):
TGTGTGAGCGCTGTTGATGGGCCTAGTGAT
Found at i:8769437 original size:24 final size:23
Alignment explanation
Indices: 8769387--8769439 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 23
8769377 AACTTTTATA
*
8769387 AAAATTATAAAATAAAAATTAATT
1 AAAATTACAAAATAAAAA-TAATT
8769411 AAAATTACATAAATAAAAA-AATCT
1 AAAATTACA-AAATAAAAATAAT-T
8769435 AAAAT
1 AAAAT
8769440 AATATTGAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 3 0.12
24 14 0.54
25 9 0.35
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (23 bp):
AAAATTACAAAATAAAAATAATT
Found at i:8774457 original size:5 final size:5
Alignment explanation
Indices: 8774447--8774499 Score: 61
Period size: 5 Copynumber: 9.6 Consensus size: 5
8774437 TCAAAAGAGG
8774447 AAAAT AAAAT AAAAT AAAAT AAAAAT AAAAAT AAAAAT AAACAT AAAAAT
1 AAAAT AAAAT AAAAT AAAAT -AAAAT -AAAAT -AAAAT AAA-AT -AAAAT
8774497 AAA
1 AAA
8774500 TAGACTCAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
5 21 0.47
6 21 0.47
7 3 0.07
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:8774473 original size:6 final size:6
Alignment explanation
Indices: 8774447--8774499 Score: 76
Period size: 6 Copynumber: 9.3 Consensus size: 6
8774437 TCAAAAGAGG
*
8774447 AAAAT- AAAAT- AAAAT- AAAATA AAAATA AAAATA AAAATA AACATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
8774492 AAAATA AA
1 AAAATA AA
8774500 TAGACTCAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
5 15 0.33
6 30 0.67
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:8786460 original size:32 final size:30
Alignment explanation
Indices: 8786420--8786482 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 30
8786410 AATCAATTAC
8786420 TTTTAAAAGATTGAT-AATAAAATTAAACTAT
1 TTTTAAAAG-TTGATGAATAAAATTAAA-TAT
* *
8786451 TTTTAAAAAGTTGATGATTAAATTTAAATAT
1 TTTT-AAAAGTTGATGAATAAAATTAAATAT
8786482 T
1 T
8786483 AAAAAATTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
31 13 0.46
32 15 0.54
ACGTcount: A:0.48, C:0.02, G:0.08, T:0.43
Consensus pattern (30 bp):
TTTTAAAAGTTGATGAATAAAATTAAATAT
Found at i:8786465 original size:31 final size:31
Alignment explanation
Indices: 8786420--8786482 Score: 76
Period size: 31 Copynumber: 2.0 Consensus size: 31
8786410 AATCAATTAC
8786420 TTTTAAAAGATTGAT-AATAAAATTAAACTAT
1 TTTTAAAAGATTGATGAATAAAATTAAA-TAT
* *
8786451 TTTTAAAA-AGTTGATGATTAAATTTAAATAT
1 TTTTAAAAGA-TTGATGAATAAAATTAAATAT
8786482 T
1 T
8786483 AAAAAATTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
30 1 0.04
31 17 0.61
32 10 0.36
ACGTcount: A:0.48, C:0.02, G:0.08, T:0.43
Consensus pattern (31 bp):
TTTTAAAAGATTGATGAATAAAATTAAATAT
Found at i:8786566 original size:2 final size:2
Alignment explanation
Indices: 8786559--8786584 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8786549 GCCCTCAGCC
8786559 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8786585 CTTCCTATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8787835 original size:132 final size:129
Alignment explanation
Indices: 8787695--8787930 Score: 309
Period size: 132 Copynumber: 1.8 Consensus size: 129
8787685 CGAGTATTTC
* * * *
8787695 CTTTGTTTT-AAAGAGTTTTTAGA-AAACGTGAGTGAAATTCCG-AAGGAATCTTCGATTGTTTT
1 CTTTGTTTTGAAAG-GTTTTTA-ATAAACATGAATGAAA-ACCGAAAGGAATATTCGATTGTTTT
* *
8787757 GAACAAAATGA-AAATGCGCAACCCAGCACGATAGGGCACGATTCTCAAATCGCCAAACATCAAA
63 AAAC-AAATGAGAAA--CACAACCCAGCACGATAGGGCACGATTCTCAAATCGCCAAACATCAAA
8787821 GATCA
125 GATCA
*
8787826 CTTTCGTTTTGAAAGGTTTTTAATGAACATGAATGAAAACCGAAAGGAATATTCGATTGTTTTAA
1 CTTT-GTTTTGAAAGGTTTTTAATAAACATGAATGAAAACCGAAAGGAATATTCGATTGTTTTAA
*
8787891 ACAAATGAGAAACACAACCCAGCACGATAGGGCATGATTC
65 ACAAATGAGAAACACAACCCAGCACGATAGGGCACGATTC
8787931 CCGAATTATC
Statistics
Matches: 92, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
130 26 0.28
131 14 0.15
132 48 0.52
133 4 0.04
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (129 bp):
CTTTGTTTTGAAAGGTTTTTAATAAACATGAATGAAAACCGAAAGGAATATTCGATTGTTTTAAA
CAAATGAGAAACACAACCCAGCACGATAGGGCACGATTCTCAAATCGCCAAACATCAAAGATCA
Found at i:8787976 original size:130 final size:130
Alignment explanation
Indices: 8787642--8787994 Score: 306
Period size: 130 Copynumber: 2.7 Consensus size: 130
8787632 CGGGAGATTG
* * * * * *
8787642 CAACCCGGCACGATAGGACACT-ACTCCCTGAATTGCCAAACATCGAGTATTTCCTTTGTTTTAA
1 CAACCCAGCACGATAGGGCA-TGATTCCC-GAATTGCCAAACACCGAGTATTACCTTCGTTTTAA
* * * * * *
8787706 AGAGTTTTTAGAAAACGTGAGTGAAATTCCGAAGGAATCTTCGATTGTTTTGAACAAAATGAAAA
64 GGA-TTTTTAGAAAACATGAATGAAATACCGAAGGAATATTCGATTGTTTTAAACAAAATGAAAA
*
8787771 TGCG
128 -GCA
* * * * ** * *
8787775 CAACCCAGCACGATAGGGCACGATTCTCAAATCGCCAAACATCAAAG-ATCACTTTCGTTTTGAA
1 CAACCCAGCACGATAGGGCATGATTCCCGAATTGCCAAACA-CCGAGTATTACCTTCGTTTT--A
*
8787839 AGG-TTTTTA-ATGAACATGAATGAAA-ACCGAAAGGAATATTCGATTGTTTTAAAC-AAATGAG
63 AGGATTTTTAGA-AAACATGAATGAAATACCG-AAGGAATATTCGATTGTTTTAAACAAAATGA-
8787900 AAA-CA
125 AAAGCA
** *
8787905 CAACCCAGCACGATAGGGCATGATTCCCGAATTATCAAACACCGAGTATTGCCTTCGTTTTAGAG
1 CAACCCAGCACGATAGGGCATGATTCCCGAATTGCCAAACACCGAGTATTACCTTCGTTTTA-AG
* * *
8787970 GATTTTTTGAAGACATGAGTGAAAT
65 GATTTTTAGAAAACATGAATGAAAT
8787995 TTTGGAGGGA
Statistics
Matches: 171, Mismatches: 37, Indels: 26
0.73 0.16 0.11
Matches are distributed among these distances:
128 1 0.01
129 6 0.04
130 63 0.37
131 11 0.06
132 63 0.37
133 24 0.14
134 3 0.02
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (130 bp):
CAACCCAGCACGATAGGGCATGATTCCCGAATTGCCAAACACCGAGTATTACCTTCGTTTTAAGG
ATTTTTAGAAAACATGAATGAAATACCGAAGGAATATTCGATTGTTTTAAACAAAATGAAAAGCA
Found at i:8788223 original size:135 final size:132
Alignment explanation
Indices: 8787905--8788223 Score: 358
Period size: 135 Copynumber: 2.4 Consensus size: 132
8787895 ATGAGAAACA
* * * * * * * * *
8787905 CAACCCAGCACGATAGGGCATGATTCC-CGAATTATCAAACACCGAGTATTGCCTTCGTTTTAGA
1 CAACCCAACACGTTAGGGCACGATTCCACGAATTACCAAATATCGAATATCGCCTTCGTTTAAGA
* * ** * * **
8787969 GGATTTTTTGAAGACATGAGTGAAATTTTGGAGGGATATTTGATTATTTGAAGCAATCGAGGAAT
66 GGATTTTTTAAAGACATGAGTGAAATTCTAAAGGGACATTCGATTATTTGAAGCAAAAGAGGAAT
8788034 TG
131 TG
* * *
8788036 CAACCCAACACGTTAGGGCACGATT-CAGCGAATTGCCAAATATCGCACATCGCCTTCGTTTAAG
1 CAACCCAACACGTTAGGGCACGATTCCA-CGAATTACCAAATATCGAATATCGCCTTCGTTTAAG
* *
8788100 -GGATTTTTTTTTAAAAGACATGGGTGAAATTCTAAAGGGACCTTCGATTACTTTG-AGCAAAAG
65 AGGA---TTTTTT-AAAGACATGAGTGAAATTCTAAAGGGACATTCGATTA-TTTGAAGCAAAAG
8788163 AGGAATTG
125 AGGAATTG
8788171 CAACCCAACACGTTAGGGCACGATTCCACGAATTACCAAATATCGAATATCGC
1 CAACCCAACACGTTAGGGCACGATTCCACGAATTACCAAATATCGAATATCGC
8788224 ATTTGTTTTA
Statistics
Matches: 155, Mismatches: 25, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
130 1 0.01
131 25 0.16
132 27 0.17
134 6 0.04
135 90 0.58
136 6 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.27
Consensus pattern (132 bp):
CAACCCAACACGTTAGGGCACGATTCCACGAATTACCAAATATCGAATATCGCCTTCGTTTAAGA
GGATTTTTTAAAGACATGAGTGAAATTCTAAAGGGACATTCGATTATTTGAAGCAAAAGAGGAAT
TG
Found at i:8794745 original size:14 final size:15
Alignment explanation
Indices: 8794728--8794760 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
8794718 TAGTAATATA
8794728 ATAATCTAAT-TAAT
1 ATAATCTAATGTAAT
8794742 ATAA-CTAATGTAAT
1 ATAATCTAATGTAAT
8794756 ATAAT
1 ATAAT
8794761 TAACTCAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (15 bp):
ATAATCTAATGTAAT
Found at i:8801815 original size:35 final size:38
Alignment explanation
Indices: 8801741--8801816 Score: 122
Period size: 39 Copynumber: 2.1 Consensus size: 38
8801731 GACTATAAGT
8801741 AGTTTTAGGTATTGTGAAAAAAAAGAAGAAGATATGATC
1 AGTTTTAGGTATTGTG-AAAAAAAGAAGAAGATATGATC
8801780 AGTTTTAGGTATTGTG-AAAAAA-AA-AAGATATGATC
1 AGTTTTAGGTATTGTGAAAAAAAGAAGAAGATATGATC
8801815 AG
1 AG
8801817 AACTTATGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
35 13 0.35
36 2 0.05
37 6 0.16
39 16 0.43
ACGTcount: A:0.46, C:0.03, G:0.22, T:0.29
Consensus pattern (38 bp):
AGTTTTAGGTATTGTGAAAAAAAGAAGAAGATATGATC
Found at i:8803053 original size:59 final size:59
Alignment explanation
Indices: 8802990--8803107 Score: 175
Period size: 59 Copynumber: 2.0 Consensus size: 59
8802980 TATGTACTAA
* * *
8802990 AAGTTAGATTATAATTTATCTCTTTTATT-TAAAAAATAGATAAATTAATCCATATACAT
1 AAGTTAAATTATAATTTATCTCTTTCATTAAAAAAAATAGAT-AATTAATCCATATACAT
* *
8803049 AAGTTAAATTATAATTTGTCTCTTTCATTAAAAAAAATAGATAATTAATCTATATACAT
1 AAGTTAAATTATAATTTATCTCTTTCATTAAAAAAAATAGATAATTAATCCATATACAT
8803108 TAGATCAAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
59 42 0.79
60 11 0.21
ACGTcount: A:0.45, C:0.08, G:0.05, T:0.42
Consensus pattern (59 bp):
AAGTTAAATTATAATTTATCTCTTTCATTAAAAAAAATAGATAATTAATCCATATACAT
Found at i:8805469 original size:31 final size:30
Alignment explanation
Indices: 8805434--8805504 Score: 106
Period size: 31 Copynumber: 2.3 Consensus size: 30
8805424 TTTAATTTAA
*
8805434 TTAATTTTAGTTTTTATATTTTTTGAATTAG
1 TTAATTTTAGTCTTTATATTTTTTGAATT-G
*
8805465 TTAATTTTAGTCTTTATATTTTTTGGATTG
1 TTAATTTTAGTCTTTATATTTTTTGAATTG
8805495 TTCAATTTTA
1 TT-AATTTTA
8805505 TTCATGATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 3 0.08
31 34 0.92
ACGTcount: A:0.24, C:0.03, G:0.10, T:0.63
Consensus pattern (30 bp):
TTAATTTTAGTCTTTATATTTTTTGAATTG
Found at i:8806568 original size:90 final size:91
Alignment explanation
Indices: 8806466--8806641 Score: 214
Period size: 91 Copynumber: 1.9 Consensus size: 91
8806456 CATTGAGGCT
* * ** *
8806466 TGAACTAGCCAATTGTTTC-CATATTAAAGTCTCAAC-TTCTTTTTGTTCAAGTTAATCTCTT-A
1 TGAACTAACCAATTG-TTCACATATTAAAGTCTCAACTTTCTTTTGGCCCAACTTAATC-CTTGA
*
8806528 ATTTGGCAATTGTTCCCACATTGGAGTG
64 ATTAGGCAATTGTTCCCACATTGGAGTG
** * * *
8806556 TGAACTAACCAATTGTTCACATATTAGGGTTTGAACTTTCTTTTGGCCCAACTTAGTCCTTGAAT
1 TGAACTAACCAATTGTTCACATATTAAAGTCTCAACTTTCTTTTGGCCCAACTTAATCCTTGAAT
8806621 TAGGCAATTGTTCCCACATTG
66 TAGGCAATTGTTCCCACATTG
8806642 AGATTTGAGC
Statistics
Matches: 72, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
89 3 0.04
90 30 0.42
91 39 0.54
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (91 bp):
TGAACTAACCAATTGTTCACATATTAAAGTCTCAACTTTCTTTTGGCCCAACTTAATCCTTGAAT
TAGGCAATTGTTCCCACATTGGAGTG
Found at i:8806685 original size:91 final size:89
Alignment explanation
Indices: 8806530--8806726 Score: 202
Period size: 91 Copynumber: 2.2 Consensus size: 89
8806520 ATCTCTTAAT
* *
8806530 TTGGCAATTGTTCCCACATTGGAGTGTGAACTAACCAATTGTTCACATATTAGGGTTTGAACTTT
1 TTGGCAATTGTTCCCACATTGGAGTGTGAACGAACCAATTGTTCACATATTAGGGCTTGAACTTT
*
8806595 CTTTTGGCCCAACTTAGTCCTTGAA
66 -TTTTGGCCCAAATTAGTCCTTGAA
* * * * *
8806620 TTAGGCAATTGTTCCCACATT-GAGATTTGAGCGAGA-TAATTGTTCCCATATT-GGAGCTTGCA
1 TT-GGCAATTGTTCCCACATTGGAG-TGTGAACGA-ACCAATTGTTCACATATTAGG-GCTTGAA
* * * *
8806682 CTTTTTTTTGTCTAAATTAGTTCTTGAA
62 CTTTTTTTGGCCCAAATTAGTCCTTGAA
*
8806710 CTTGGTAATTGTTCCCA
1 -TTGGCAATTGTTCCCA
8806727 TGTTAGGGCC
Statistics
Matches: 89, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
90 39 0.44
91 49 0.55
92 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.39
Consensus pattern (89 bp):
TTGGCAATTGTTCCCACATTGGAGTGTGAACGAACCAATTGTTCACATATTAGGGCTTGAACTTT
TTTTGGCCCAAATTAGTCCTTGAA
Found at i:8807959 original size:23 final size:23
Alignment explanation
Indices: 8807909--8807952 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
8807899 TCTAATAAGT
* *
8807909 AAGAGAAAACTTGAGGTTTTTAC
1 AAGAAAAAACTTGAGATTTTTAC
8807932 AAGAAAAAACTTGA-ATTTTTA
1 AAGAAAAAACTTGAGATTTTTA
8807953 TAGAGAATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.45, C:0.07, G:0.16, T:0.32
Consensus pattern (23 bp):
AAGAAAAAACTTGAGATTTTTAC
Found at i:8812656 original size:14 final size:13
Alignment explanation
Indices: 8812633--8812664 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
8812623 TTTTAAATCA
8812633 TATTTTATTATTT
1 TATTTTATTATTT
8812646 TATTATTATTATTT
1 TATT-TTATTATTT
8812660 TATTT
1 TATTT
8812665 AGTATATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (13 bp):
TATTTTATTATTT
Found at i:8814851 original size:46 final size:46
Alignment explanation
Indices: 8814799--8815163 Score: 466
Period size: 46 Copynumber: 8.0 Consensus size: 46
8814789 GCTTTCTGAA
* *
8814799 ATGAAATGTGTAAGAACATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
8814845 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
8814891 AT-AAATTGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAA-TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
8814937 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
8814983 ATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* ** ** * *
8815029 A-GGAATGAATAAGACCATGGTTGAAAGATACCATGGCAATGTAAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
**** * *
8815074 ATGAAATAAACAAGACCATGGTTGAAAGATACCATGGCAACCTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * * * *
8815120 A-GAAAATGAGTAAAACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
8815164 TCAAAGATAA
Statistics
Matches: 285, Mismatches: 30, Indels: 8
0.88 0.09 0.02
Matches are distributed among these distances:
45 42 0.15
46 240 0.84
47 3 0.01
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:8815103 original size:137 final size:138
Alignment explanation
Indices: 8814810--8815163 Score: 458
Period size: 137 Copynumber: 2.6 Consensus size: 138
8814800 TGAAATGTGT
* * *
8814810 AAGAACATGGTTGAAAGACACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGATATAAAATGTGTAAGACCATGGTTGAAAGAT
* * * * ** * *
8814875 ACCATGGCAATAGGATATAAATTGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG
66 ACCATGGCAACATGACAGAAATTGAATAAGACCATGGTTGAAAGATACCATGGCAACATAACATG
****
8814940 AAATGTGT
131 AAATAAAC
8814948 AAGACCATGGTTGAAAGATACCATGGCAACATGATATAAAATGTGTAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGATATAAAATGTGTAAGACCATGGTTGAAAGAT
* **
8815013 ACCATGGCAACATGACAGGAA-TGAATAAGACCATGGTTGAAAGATACCATGGCAATGTAACATG
66 ACCATGGCAACATGACAGAAATTGAATAAGACCATGGTTGAAAGATACCATGGCAACATAACATG
8815077 AAATAAAC
131 AAATAAAC
* * * * * * *
8815085 AAGACCATGGTTGAAAGATACCATGGCAACCTGACAGAAAATGAGTAAAACCATAGTTGAAAGAC
1 AAGACCATGGTTGAAAGATACCATGGCAACATGATATAAAATGTGTAAGACCATGGTTGAAAGAT
* *
8815150 ACTATGGCATCATG
66 ACCATGGCAACATG
8815164 TCAAAGATAA
Statistics
Matches: 189, Mismatches: 27, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
137 111 0.59
138 78 0.41
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.21
Consensus pattern (138 bp):
AAGACCATGGTTGAAAGATACCATGGCAACATGATATAAAATGTGTAAGACCATGGTTGAAAGAT
ACCATGGCAACATGACAGAAATTGAATAAGACCATGGTTGAAAGATACCATGGCAACATAACATG
AAATAAAC
Found at i:8815111 original size:183 final size:184
Alignment explanation
Indices: 8814802--8815163 Score: 489
Period size: 183 Copynumber: 2.0 Consensus size: 184
8814792 TTCTGAAATG
* **
8814802 AAATGTGTAAGAACATGGTTGAAAGACACCATGGCAACATGATATGAAATGTGTAAGACCATGGT
1 AAATGTGTAAGAACATGGTTGAAAGACACCATGGCAACATGACATGAAATGAATAAGACCATGGT
* * ****
8814867 TGAAAGATACCATGGCAATAGGATATAAATTGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAATAGAACATAAATTAAACAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
8814932 ATGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATA
131 ATGACA-GAAAATGAGTAAAACCATAGTTGAAAGACACCATGGCAACATGATATA
* * *
8814986 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GGAATGAATAAGACCATGGT
1 AAATGTGTAAGAACATGGTTGAAAGACACCATGGCAACATGACATGAAATGAATAAGACCATGGT
8815050 TGAAAGATACCATGGCAAT-GTAACATGAAA-TAAACAAGACCATGGTTGAAAGATACCATGGCA
66 TGAAAGATACCATGGCAATAG-AACAT-AAATTAAACAAGACCATGGTTGAAAGATACCATGGCA
* * *
8815113 ACCTGACAGAAAATGAGTAAAACCATAGTTGAAAGACACTATGGCATCATG
129 ACATGACAGAAAATGAGTAAAACCATAGTTGAAAGACACCATGGCAACATG
8815164 TCAAAGATAA
Statistics
Matches: 155, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
182 2 0.01
183 109 0.70
184 44 0.28
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (184 bp):
AAATGTGTAAGAACATGGTTGAAAGACACCATGGCAACATGACATGAAATGAATAAGACCATGGT
TGAAAGATACCATGGCAATAGAACATAAATTAAACAAGACCATGGTTGAAAGATACCATGGCAAC
ATGACAGAAAATGAGTAAAACCATAGTTGAAAGACACCATGGCAACATGATATA
Found at i:8815465 original size:16 final size:17
Alignment explanation
Indices: 8815444--8815476 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8815434 ATGATGGAGC
8815444 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
8815460 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
8815477 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:8818970 original size:12 final size:12
Alignment explanation
Indices: 8818953--8818977 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8818943 AATCAATTTC
8818953 TATATATATATT
1 TATATATATATT
8818965 TATATATATATT
1 TATATATATATT
8818977 T
1 T
8818978 TAAATTTCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TATATATATATT
Found at i:8819618 original size:17 final size:17
Alignment explanation
Indices: 8819596--8819629 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
8819586 ATTAGTTCTA
8819596 ATCAAATTCTAATTAGC
1 ATCAAATTCTAATTAGC
8819613 ATCAAATTCTAATTAGC
1 ATCAAATTCTAATTAGC
8819630 CCATCATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.18, G:0.06, T:0.35
Consensus pattern (17 bp):
ATCAAATTCTAATTAGC
Found at i:8823020 original size:20 final size:20
Alignment explanation
Indices: 8822977--8823025 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
8822967 AGAAGCCAAT
* *
8822977 AAATCAATTTGATTAAAATT
1 AAATCAAATTGATTAAAATC
**
8822997 AAATCAAATTGATTGGAATC
1 AAATCAAATTGATTAAAATC
*
8823017 AAATAAAAT
1 AAATCAAAT
8823026 AAGATAAATA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.33
Consensus pattern (20 bp):
AAATCAAATTGATTAAAATC
Found at i:8823808 original size:14 final size:15
Alignment explanation
Indices: 8823777--8823808 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
8823767 TTTTTTTCTT
8823777 TTTTAATTTTAGTTA
1 TTTTAATTTTAGTTA
8823792 TTTTAATTTTA-TTA
1 TTTTAATTTTAGTTA
8823806 TTT
1 TTT
8823809 GATAAGAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (15 bp):
TTTTAATTTTAGTTA
Found at i:8829700 original size:34 final size:34
Alignment explanation
Indices: 8829634--8829702 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
8829624 TAGAATAACA
8829634 TAGAATTAATATTGCTTATAAAATAAAACTAATT
1 TAGAATTAATATTGCTTATAAAATAAAACTAATT
8829668 TAGAATTAATATTGCTTATAAAATAAAACTAATT
1 TAGAATTAATATTGCTTATAAAATAAAACTAATT
8829702 T
1 T
8829703 TAATATAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.39
Consensus pattern (34 bp):
TAGAATTAATATTGCTTATAAAATAAAACTAATT
Found at i:8830750 original size:13 final size:13
Alignment explanation
Indices: 8830732--8830756 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8830722 TTTATAGCCA
8830732 AAATAAATAAAAT
1 AAATAAATAAAAT
8830745 AAATAAATAAAA
1 AAATAAATAAAA
8830757 AGAAATCCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
AAATAAATAAAAT
Found at i:8833132 original size:45 final size:45
Alignment explanation
Indices: 8833081--8833169 Score: 124
Period size: 45 Copynumber: 2.0 Consensus size: 45
8833071 TCTCGACTCA
** ** *
8833081 TCTTCTCAGTTGAGCTATTTACTGCCATTGCCATTTCTTTCTTCC
1 TCTTCTCAACTGAGCTATTTACTGCCAGCGCCATCTCTTTCTTCC
*
8833126 TCTTCTCAACTGAGCTATTTACTGTCAGCGCCATCTCTTTCTTC
1 TCTTCTCAACTGAGCTATTTACTGCCAGCGCCATCTCTTTCTTC
8833170 ATTTTATCAG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.15, C:0.30, G:0.11, T:0.44
Consensus pattern (45 bp):
TCTTCTCAACTGAGCTATTTACTGCCAGCGCCATCTCTTTCTTCC
Found at i:8835487 original size:26 final size:26
Alignment explanation
Indices: 8835458--8835507 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
8835448 AAACTTTTTT
* *
8835458 TTTTTTGCAGTGAATTAATTTATATA
1 TTTTTTGAAGGGAATTAATTTATATA
*
8835484 TTTTTTTAAGGGAATTAATTTATA
1 TTTTTTGAAGGGAATTAATTTATA
8835508 ATGTATCTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.32, C:0.02, G:0.12, T:0.54
Consensus pattern (26 bp):
TTTTTTGAAGGGAATTAATTTATATA
Found at i:8841666 original size:14 final size:13
Alignment explanation
Indices: 8841639--8841682 Score: 54
Period size: 14 Copynumber: 3.4 Consensus size: 13
8841629 TTAAATCAAA
*
8841639 TTTTTTAAAA-AC
1 TTTTTAAAAACAC
8841651 TTTTTAAAAAGCAC
1 TTTTTAAAAA-CAC
*
8841665 TTCTTAAAAACAC
1 TTTTTAAAAACAC
8841678 TTTTT
1 TTTTT
8841683 CACAGTACTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
12 9 0.33
13 7 0.26
14 11 0.41
ACGTcount: A:0.39, C:0.14, G:0.02, T:0.45
Consensus pattern (13 bp):
TTTTTAAAAACAC
Found at i:8841673 original size:13 final size:13
Alignment explanation
Indices: 8841640--8841702 Score: 58
Period size: 13 Copynumber: 4.9 Consensus size: 13
8841630 TAAATCAAAT
8841640 TTTTTAAAA--AC
1 TTTTTAAAAGCAC
8841651 TTTTTAAAAAGCAC
1 TTTTT-AAAAGCAC
* *
8841665 TTCTTAAAAACAC
1 TTTTTAAAAGCAC
* * *
8841678 TTTTTCACAGTAC
1 TTTTTAAAAGCAC
8841691 TTTTTAAAAGCA
1 TTTTTAAAAGCA
8841703 TTGCCAAACT
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
11 5 0.13
12 4 0.10
13 24 0.62
14 6 0.15
ACGTcount: A:0.40, C:0.16, G:0.05, T:0.40
Consensus pattern (13 bp):
TTTTTAAAAGCAC
Found at i:8849192 original size:46 final size:46
Alignment explanation
Indices: 8849125--8849212 Score: 140
Period size: 46 Copynumber: 1.9 Consensus size: 46
8849115 ACTGAGTCTT
** *
8849125 AGTTTAGATGGGTGGTGTAGATTATGTATTTAGATTCAAAAGCAGC
1 AGTTTAGATGAATAGTGTAGATTATGTATTTAGATTCAAAAGCAGC
*
8849171 AGTTTAGATGAATAGTGTAGATTATGTATTTGGATTCAAAAG
1 AGTTTAGATGAATAGTGTAGATTATGTATTTAGATTCAAAAG
8849213 TAACTATAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.36
Consensus pattern (46 bp):
AGTTTAGATGAATAGTGTAGATTATGTATTTAGATTCAAAAGCAGC
Found at i:8851933 original size:29 final size:29
Alignment explanation
Indices: 8851895--8851951 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
8851885 TTGTAATAAA
*
8851895 TATATATTTATTATGTAA-AAATAATTTTT
1 TATAGATTTATTATGTAATAAAT-ATTTTT
8851924 TATAGATTTATTATGTAATAAATATTTT
1 TATAGATTTATTATGTAATAAATATTTT
8851952 ATAATATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 22 0.85
30 4 0.15
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.54
Consensus pattern (29 bp):
TATAGATTTATTATGTAATAAATATTTTT
Found at i:8851962 original size:29 final size:28
Alignment explanation
Indices: 8851896--8851964 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 28
8851886 TGTAATAAAT
*
8851896 ATATATTTATTATGTAAAAATAATTTTTT
1 ATAT-TTTATTATGTAAAAATAATTTTTA
*
8851925 ATAGATTTATTATGTAATAAAT-ATTTTATA
1 ATA-TTTTATTATGTAA-AAATAATTTT-TA
8851955 ATATTTTATT
1 ATATTTTATT
8851965 TACCAAATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
29 26 0.76
30 8 0.24
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (28 bp):
ATATTTTATTATGTAAAAATAATTTTTA
Found at i:8863943 original size:6 final size:6
Alignment explanation
Indices: 8863932--8863963 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
8863922 TTCGGGTGAA
8863932 GAAGAG GAAGAG GAAGAG GAAGAG GAAG-G GAA
1 GAAGAG GAAGAG GAAGAG GAAGAG GAAGAG GAA
8863964 CCAAAAGGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.15
6 22 0.85
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (6 bp):
GAAGAG
Found at i:8870085 original size:22 final size:22
Alignment explanation
Indices: 8870059--8870102 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
8870049 TATTAATTTA
8870059 AATTATTATTCGATTTTAATGG
1 AATTATTATTCGATTTTAATGG
8870081 AATTATTATTCGATTTTAATGG
1 AATTATTATTCGATTTTAATGG
8870103 TTTTCTCAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.05, G:0.14, T:0.50
Consensus pattern (22 bp):
AATTATTATTCGATTTTAATGG
Found at i:8870365 original size:31 final size:31
Alignment explanation
Indices: 8870321--8870384 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
8870311 TACGCTTCCC
* *
8870321 ATCATTTTGCACATCTCTCATTCTATGAATA
1 ATCATTGTACACATCTCTCATTCTATGAATA
*
8870352 ATCATTGTACACATCTCTCATTCTATGGATA
1 ATCATTGTACACATCTCTCATTCTATGAATA
8870383 AT
1 AT
8870385 ACGACACTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41
Consensus pattern (31 bp):
ATCATTGTACACATCTCTCATTCTATGAATA
Found at i:8884045 original size:17 final size:17
Alignment explanation
Indices: 8884019--8884060 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
8884009 TTAAGGACTA
*
8884019 AATTGATGTAAAATGAT
1 AATTGGTGTAAAATGAT
8884036 AATTGGTGTAAAATGAT
1 AATTGGTGTAAAATGAT
8884053 AATTGGTG
1 AATTGGTG
8884061 GAAATATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.40, C:0.00, G:0.24, T:0.36
Consensus pattern (17 bp):
AATTGGTGTAAAATGAT
Found at i:8886575 original size:3 final size:3
Alignment explanation
Indices: 8886569--8886594 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
8886559 GGTGGTGGAA
8886569 AGG AGG AGG AGG AGG AGG AGG AGG AG
1 AGG AGG AGG AGG AGG AGG AGG AGG AG
8886595 AAGTTTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.65, T:0.00
Consensus pattern (3 bp):
AGG
Found at i:8902947 original size:21 final size:20
Alignment explanation
Indices: 8902923--8902961 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
8902913 GTTAAAAATA
*
8902923 ATTATCATTTTCATCATTTGG
1 ATTATCATGTTCAT-ATTTGG
8902944 ATTATCATGTTCATATTT
1 ATTATCATGTTCATATTT
8902962 TAATCTCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.26, C:0.13, G:0.08, T:0.54
Consensus pattern (20 bp):
ATTATCATGTTCATATTTGG
Found at i:8909310 original size:29 final size:29
Alignment explanation
Indices: 8909277--8909334 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
8909267 GGAAAGCCCC
*
8909277 ATATAGCCCTTTCAAAGCTCACCTCTTCA
1 ATATAGCCCGTTCAAAGCTCACCTCTTCA
*
8909306 ATATAGCCCGTTCAAGGCTCACCTCTTCA
1 ATATAGCCCGTTCAAAGCTCACCTCTTCA
8909335 GAGAAAGAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.26, C:0.34, G:0.10, T:0.29
Consensus pattern (29 bp):
ATATAGCCCGTTCAAAGCTCACCTCTTCA
Found at i:8909352 original size:3 final size:3
Alignment explanation
Indices: 8909344--8909369 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
8909334 AGAGAAAGAA
8909344 TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TC
8909370 ACTTTACATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TCT
Found at i:8918414 original size:42 final size:42
Alignment explanation
Indices: 8918340--8918439 Score: 112
Period size: 42 Copynumber: 2.4 Consensus size: 42
8918330 GATTTAACTG
* * * * *
8918340 ATGATGCACTTACATTCCAGTATATTTTCTTCAGTACATTCA
1 ATGATACACTTACATGCCAATATATTTGCTTCAGTACATCCA
* *
8918382 ATGATACACTTACATGCCAATATGA-TTGCTTCAGTATATCCG
1 ATGATACACTTACATGCCAATAT-ATTTGCTTCAGTACATCCA
*
8918424 ATGATTCACTTACATG
1 ATGATACACTTACATG
8918440 TCAGAATATT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 48 0.98
43 1 0.02
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.37
Consensus pattern (42 bp):
ATGATACACTTACATGCCAATATATTTGCTTCAGTACATCCA
Found at i:8924762 original size:31 final size:31
Alignment explanation
Indices: 8924710--8924768 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
8924700 TGAACATACA
*
8924710 TTTATATTTGTATTTACTTTTAA-ATTTGTT
1 TTTATATATGTATTTACTTTTAAGATTTGTT
8924740 TTTATATAATGTATTT-CTTTTTAAGATTT
1 TTTATAT-ATGTATTTAC-TTTTAAGATTT
8924769 TATTTCACTG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 8 0.32
31 13 0.52
32 4 0.16
ACGTcount: A:0.25, C:0.03, G:0.07, T:0.64
Consensus pattern (31 bp):
TTTATATATGTATTTACTTTTAAGATTTGTT
Found at i:8924835 original size:9 final size:9
Alignment explanation
Indices: 8924821--8924863 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
8924811 ATTATTATTT
8924821 TATTATTGC
1 TATTATTGC
*
8924830 TATTATTTC
1 TATTATTGC
**
8924839 TATTATTAT
1 TATTATTGC
*
8924848 TATTATGGC
1 TATTATTGC
8924857 TATTATT
1 TATTATT
8924864 ATTTCTTTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.26, C:0.07, G:0.07, T:0.60
Consensus pattern (9 bp):
TATTATTGC
Found at i:8924851 original size:18 final size:18
Alignment explanation
Indices: 8924811--8924866 Score: 69
Period size: 18 Copynumber: 3.2 Consensus size: 18
8924801 ATTCTCATCC
8924811 ATTATTATTT-TATTATT
1 ATTATTATTTCTATTATT
**
8924828 GCTATTATTTCTATTATT
1 ATTATTATTTCTATTATT
**
8924846 ATTATTATGGCTATTATT
1 ATTATTATTTCTATTATT
8924864 ATT
1 ATT
8924867 TCTTTTTGAA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
17 8 0.25
18 24 0.75
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.62
Consensus pattern (18 bp):
ATTATTATTTCTATTATT
Found at i:8928805 original size:18 final size:18
Alignment explanation
Indices: 8928774--8928819 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 18
8928764 AACTTTTTTA
*
8928774 AAAAAAATTATATATGTTAT
1 AAAAATATTATATA--TTAT
*
8928794 GAAAATATTATATATTAT
1 AAAAATATTATATATTAT
8928812 AAAAATAT
1 AAAAATAT
8928820 AAAAATTATG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 11 0.48
20 12 0.52
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (18 bp):
AAAAATATTATATATTAT
Found at i:8928844 original size:20 final size:19
Alignment explanation
Indices: 8928812--8928876 Score: 60
Period size: 20 Copynumber: 3.4 Consensus size: 19
8928802 TATATATTAT
*
8928812 AAAAATA-TAAAAATTATGA
1 AAAAATATTTAAAA-TATGA
*
8928831 AAAAATGTTTAAAATATAGA
1 AAAAATATTTAAAATAT-GA
** *
8928851 AAATTTATTTAAAATATTA
1 AAAAATATTTAAAATATGA
8928870 AAAAATA
1 AAAAATA
8928877 GAAAACTGCA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
19 15 0.42
20 21 0.58
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (19 bp):
AAAAATATTTAAAATATGA
Found at i:8928956 original size:10 final size:10
Alignment explanation
Indices: 8928943--8928976 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
8928933 AATAATCAAA
8928943 AAAATTATAT
1 AAAATTATAT
* *
8928953 AAAATTACAA
1 AAAATTATAT
8928963 AAAATTATAT
1 AAAATTATAT
8928973 AAAA
1 AAAA
8928977 CTACAAAAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (10 bp):
AAAATTATAT
Found at i:8928956 original size:22 final size:20
Alignment explanation
Indices: 8928931--8928985 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 20
8928921 ATATTGTTAC
8928931 AAAATAATCAAAAAAATTATAT
1 AAAATAA-C-AAAAAATTATAT
*
8928953 AAAATTACAAAAAATTATAT
1 AAAATAACAAAAAATTATAT
8928973 AAAACT-ACAAAAA
1 AAAA-TAACAAAAA
8928986 TATAAAATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 23 0.74
21 2 0.06
22 6 0.19
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (20 bp):
AAAATAACAAAAAATTATAT
Found at i:8928966 original size:20 final size:20
Alignment explanation
Indices: 8928941--8928985 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
8928931 AAAATAATCA
*
8928941 AAAAAATTATATAAAATTAC
1 AAAAAATTATATAAAACTAC
8928961 AAAAAATTATATAAAACTAC
1 AAAAAATTATATAAAACTAC
8928981 AAAAA
1 AAAAA
8928986 TATAAAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (20 bp):
AAAAAATTATATAAAACTAC
Found at i:8932496 original size:21 final size:20
Alignment explanation
Indices: 8932460--8932501 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
8932450 CTGAATACAA
8932460 GTCTGTTTGTCAGAACATTTT
1 GTCTGTTTGTCAGAAC-TTTT
**
8932481 GTCTGTTTGTGTGAACTTTT
1 GTCTGTTTGTCAGAACTTTT
8932501 G
1 G
8932502 GTTATTGACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.14, C:0.12, G:0.24, T:0.50
Consensus pattern (20 bp):
GTCTGTTTGTCAGAACTTTT
Found at i:8936102 original size:20 final size:20
Alignment explanation
Indices: 8936077--8936117 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
8936067 CAAAAATATG
8936077 TATTTTCAAATATTTTATTT
1 TATTTTCAAATATTTTATTT
***
8936097 TATTTTCTTCTATTTTATTT
1 TATTTTCAAATATTTTATTT
8936117 T
1 T
8936118 TTTAACTCTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.71
Consensus pattern (20 bp):
TATTTTCAAATATTTTATTT
Found at i:8939502 original size:18 final size:19
Alignment explanation
Indices: 8939481--8939522 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
8939471 AATTTTGATA
8939481 TTTTAAA-TTATTTTTGT-T
1 TTTTAAATTTA-TTTTGTCT
*
8939499 TTTTATATTTATTTTGTCT
1 TTTTAAATTTATTTTGTCT
8939518 TTTTA
1 TTTTA
8939523 GTGAGAGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.19, C:0.02, G:0.05, T:0.74
Consensus pattern (19 bp):
TTTTAAATTTATTTTGTCT
Found at i:8940265 original size:6 final size:6
Alignment explanation
Indices: 8940254--8940281 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
8940244 CTTTATAATT
8940254 TTTAAA TTTAAA TTTAAA TTTAAA TTTA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTA
8940282 TTTTAAAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:8940302 original size:14 final size:14
Alignment explanation
Indices: 8940275--8940309 Score: 54
Period size: 13 Copynumber: 2.5 Consensus size: 14
8940265 ATTTAAATTT
8940275 AAATTTATTTTAAA
1 AAATTTATTTTAAA
8940289 GAAATTTA-TTTAAA
1 -AAATTTATTTTAAA
8940303 AAATTTA
1 AAATTTA
8940310 AGTCTATTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 7 0.35
14 6 0.30
15 7 0.35
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (14 bp):
AAATTTATTTTAAA
Found at i:8942851 original size:25 final size:25
Alignment explanation
Indices: 8942823--8942879 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 25
8942813 GTTACTGATT
*
8942823 TCAGCTCTTATGAGCTTACCATTAC
1 TCAGCTCGTATGAGCTTACCATTAC
*
8942848 TCAGCTCGTATGAGCTTACCATTAT
1 TCAGCTCGTATGAGCTTACCATTAC
8942873 TCAGCTC
1 TCAGCTC
8942880 AGAGGAGTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.23, C:0.28, G:0.14, T:0.35
Consensus pattern (25 bp):
TCAGCTCGTATGAGCTTACCATTAC
Found at i:8942891 original size:25 final size:25
Alignment explanation
Indices: 8942823--8942892 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
8942813 GTTACTGATT
* *
8942823 TCAGCTCTTATGAGCTTACCATTAC
1 TCAGCTCGTAGGAGCTTACCATTAC
* *
8942848 TCAGCTCGTATGAGCTTACCATTAT
1 TCAGCTCGTAGGAGCTTACCATTAC
*
8942873 TCAGCTCAG-AGGAGTTTACC
1 TCAGCTC-GTAGGAGCTTACC
8942893 GTTTACCGCT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 39 0.98
26 1 0.03
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (25 bp):
TCAGCTCGTAGGAGCTTACCATTAC
Found at i:8945891 original size:38 final size:38
Alignment explanation
Indices: 8945764--8945896 Score: 160
Period size: 38 Copynumber: 3.4 Consensus size: 38
8945754 ACATAACACT
* * * *
8945764 AGCACGAAGCCTACGGGACTTTAAACTCAGATATAATACC
1 AGCACTAAGCCTGCGGGA-TTT-AACCCGGATATAATACC
* *
8945804 AGCACTAGGCCTGCAGGATTTAACCCGGATATAATACC
1 AGCACTAAGCCTGCGGGATTTAACCCGGATATAATACC
* *
8945842 AGCACGAAGCCTGCGGGATTTAACCCGGATATAATTCC
1 AGCACTAAGCCTGCGGGATTTAACCCGGATATAATACC
8945880 AGCA-TATAGCCTGCGGG
1 AGCACTA-AGCCTGCGGG
8945897 TCTTTAAGCG
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
37 1 0.01
38 63 0.78
39 3 0.04
40 14 0.17
ACGTcount: A:0.32, C:0.26, G:0.23, T:0.20
Consensus pattern (38 bp):
AGCACTAAGCCTGCGGGATTTAACCCGGATATAATACC
Found at i:8947497 original size:17 final size:17
Alignment explanation
Indices: 8947475--8947508 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8947465 TAGGGGAAAG
8947475 TCTAGAACTTAATTATA
1 TCTAGAACTTAATTATA
*
8947492 TCTAGAAGTTAATTATA
1 TCTAGAACTTAATTATA
8947509 AATCATTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (17 bp):
TCTAGAACTTAATTATA
Found at i:8949729 original size:21 final size:19
Alignment explanation
Indices: 8949693--8949747 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 19
8949683 AAGTTTAAAT
*
8949693 TTTA-AAAAAAATTAAAAA
1 TTTATAAAAATATTAAAAA
*
8949711 TTTGTAAAACATTATT-AAAA
1 TTTATAAAA-A-TATTAAAAA
8949731 TTTATAAAAATATTAAA
1 TTTATAAAAATATTAAA
8949748 TAAATTTCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
18 7 0.23
19 7 0.23
20 13 0.43
21 3 0.10
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (19 bp):
TTTATAAAAATATTAAAAA
Found at i:8949746 original size:18 final size:18
Alignment explanation
Indices: 8949687--8949747 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
8949677 GTTTCAAAGT
* *
8949687 TTAAATTTTA-AAAAAAA
1 TTAAAATTTATAAAAATA
*
8949704 TTAAAAATTTGTAAAACATTA
1 TT-AAAATTTATAAAA-A-TA
8949725 TTAAAATTTATAAAAATA
1 TTAAAATTTATAAAAATA
8949743 TTAAA
1 TTAAA
8949748 TAAATTTCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
17 2 0.06
18 13 0.36
19 5 0.14
20 13 0.36
21 3 0.08
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (18 bp):
TTAAAATTTATAAAAATA
Found at i:8952593 original size:87 final size:87
Alignment explanation
Indices: 8952426--8952602 Score: 246
Period size: 87 Copynumber: 2.0 Consensus size: 87
8952416 ATAATTGTAG
* * * *
8952426 TACTATCCATATTAAGCACCACCCTTTTTAGCCCTAGATTCCAAGTTACATGCAGTTCTTCAAGA
1 TACTATCCATATTAAGCACCACCCTTTTTAGCACTAGATTCCAAGCTACATGCAGTTCCTCAAAA
*
8952491 TCTCCCAAAACATGGTATTGAA
66 TCACCCAAAACATGGTATTGAA
* * * * *
8952513 TACTATCCATGTTAAGCACCATCCTTTTTTGCACTAGATTCGAAGCTACGTGCAGTTCCTCAAAA
1 TACTATCCATATTAAGCACCACCCTTTTTAGCACTAGATTCCAAGCTACATGCAGTTCCTCAAAA
* *
8952578 TCACCTAAAATATGGTATTGAA
66 TCACCCAAAACATGGTATTGAA
8952600 TAC
1 TAC
8952603 AGAACAGCAC
Statistics
Matches: 78, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
87 78 1.00
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.32
Consensus pattern (87 bp):
TACTATCCATATTAAGCACCACCCTTTTTAGCACTAGATTCCAAGCTACATGCAGTTCCTCAAAA
TCACCCAAAACATGGTATTGAA
Found at i:8963909 original size:28 final size:28
Alignment explanation
Indices: 8963867--8963921 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
8963857 AAGAGAGACA
* *
8963867 GAAGGGCTCTGTTACTAGTACGAGGCAG
1 GAAGCGCTCTATTACTAGTACGAGGCAG
*
8963895 GAAGCGCTCTATTACTAGTACGGGGCA
1 GAAGCGCTCTATTACTAGTACGAGGCA
8963922 AGATCCTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.33, T:0.22
Consensus pattern (28 bp):
GAAGCGCTCTATTACTAGTACGAGGCAG
Found at i:8965341 original size:22 final size:22
Alignment explanation
Indices: 8965295--8965341 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
8965285 TATTAGATAT
**
8965295 TAAATAGATATTTATTATTTTA
1 TAAATAGATATTTATTATTAAA
8965317 TAAA-AGATATTTATTAATTAAA
1 TAAATAGATATTTATT-ATTAAA
8965339 TAA
1 TAA
8965342 TTATATTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (22 bp):
TAAATAGATATTTATTATTAAA
Found at i:8967373 original size:23 final size:25
Alignment explanation
Indices: 8967316--8967374 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
8967306 TTAGCCCTCT
*
8967316 CGAGCTTCCCGTTATATGGTTCTTG
1 CGAGCTTCCCGTTATATGCTTCTTG
*
8967341 CGAGCTTCCCGTTATA-GCTTTTTG
1 CGAGCTTCCCGTTATATGCTTCTTG
*
8967365 -GAGCGTCCCG
1 CGAGCTTCCCG
8967375 ATAGGTTGTG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
23 9 0.29
24 6 0.19
25 16 0.52
ACGTcount: A:0.12, C:0.27, G:0.25, T:0.36
Consensus pattern (25 bp):
CGAGCTTCCCGTTATATGCTTCTTG
Found at i:8967470 original size:23 final size:23
Alignment explanation
Indices: 8967436--8967504 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
8967426 CCCGTTATAT
*
8967436 GGCTCTTCGTGAGCTTCCCGATA
1 GGCTCTTTGTGAGCTTCCCGATA
8967459 GGCTCTTTGTGAGCTTCCCGATA
1 GGCTCTTTGTGAGCTTCCCGATA
** *
8967482 GTGCTCGCT-TGAACTTCCCGATA
1 G-GCTCTTTGTGAGCTTCCCGATA
8967505 TATGGCTATC
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
23 36 0.88
24 5 0.12
ACGTcount: A:0.14, C:0.29, G:0.25, T:0.32
Consensus pattern (23 bp):
GGCTCTTTGTGAGCTTCCCGATA
Found at i:8967982 original size:46 final size:46
Alignment explanation
Indices: 8967929--8968077 Score: 167
Period size: 46 Copynumber: 3.3 Consensus size: 46
8967919 TTTTGAATGT
* *
8967929 ATAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAATAA
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATAA
*
8967975 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGA
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATAA
* * * * * * * *
8968021 GTAAGACCATAGTTGAAAGACACTATGACATCATGTC-GAAGATAA
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATAA
*
8968066 ATAAGATCATGG
1 ATAAGACCATGG
8968078 AAGAGAGACG
Statistics
Matches: 87, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
45 16 0.18
46 71 0.82
ACGTcount: A:0.44, C:0.15, G:0.21, T:0.21
Consensus pattern (46 bp):
ATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATAA
Found at i:8971160 original size:28 final size:28
Alignment explanation
Indices: 8971127--8971198 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
8971117 TTCGATATTT
*
8971127 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
8971155 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
8971183 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
8971199 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:8978502 original size:20 final size:19
Alignment explanation
Indices: 8978479--8978525 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
8978469 ATATATAAGC
*
8978479 ATTTTTAATAT-ATTTTTA
1 ATTTTTAATATAATTTTAA
*
8978497 ATATTTTATATTTAATTTTAA
1 AT-TTTTA-ATATAATTTTAA
8978518 ATTTTTAA
1 ATTTTTAA
8978526 AATTTGTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
18 2 0.08
19 6 0.25
20 8 0.33
21 8 0.33
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
ATTTTTAATATAATTTTAA
Found at i:8979195 original size:30 final size:30
Alignment explanation
Indices: 8979159--8979221 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 30
8979149 AATTAACAAG
8979159 CAAATGT-TTCTAAAATAATAACAAAA-TTAA
1 CAAATGTCTT-TAAAATAATAA-AAAAGTTAA
8979189 CAAATGTCTTTAAAATAATAAAAAAGTTAA
1 CAAATGTCTTTAAAATAATAAAAAAGTTAA
8979219 CAA
1 CAA
8979222 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
29 4 0.13
30 25 0.81
31 2 0.06
ACGTcount: A:0.57, C:0.10, G:0.05, T:0.29
Consensus pattern (30 bp):
CAAATGTCTTTAAAATAATAAAAAAGTTAA
Found at i:8979306 original size:22 final size:22
Alignment explanation
Indices: 8979259--8979320 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
8979249 TAATAACAAC
* * *
8979259 AAAATAGTAGCAACATAATAGT
1 AAAATAGTAACAAAATAAGAGT
8979281 AAAATAGTAACAAAATAAGGAG-
1 AAAATAGTAACAAAATAA-GAGT
* *
8979303 AAAATAATAAGAAAATAA
1 AAAATAGTAACAAAATAA
8979321 TATTAAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
22 32 0.94
23 2 0.06
ACGTcount: A:0.65, C:0.05, G:0.13, T:0.18
Consensus pattern (22 bp):
AAAATAGTAACAAAATAAGAGT
Found at i:8979310 original size:33 final size:33
Alignment explanation
Indices: 8979256--8979319 Score: 78
Period size: 33 Copynumber: 1.9 Consensus size: 33
8979246 AAATAATAAC
* *
8979256 AACAAAATAGTAGCAACATAAT-AGTAAAATAGT
1 AACAAAATAGGAGCAAAATAATAAG-AAAATAGT
8979289 AACAAAATAAGGAG-AAAATAATAAGAAAATA
1 AACAAAAT-AGGAGCAAAATAATAAGAAAATA
8979320 ATATTAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 21 0.78
34 6 0.22
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.17
Consensus pattern (33 bp):
AACAAAATAGGAGCAAAATAATAAGAAAATAGT
Found at i:8988377 original size:42 final size:42
Alignment explanation
Indices: 8988313--8988439 Score: 152
Period size: 42 Copynumber: 3.0 Consensus size: 42
8988303 CTTCGTTTTC
** ** * *
8988313 TCGATGCCATAGTTCAATTATGGTCTTACATATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
*
8988356 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
8988397 TCGATGCCATAGCCCAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC-ATATTCACATA
8988438 TC
1 TC
8988440 TCACTGATGC
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
41 10 0.14
42 62 0.84
43 2 0.03
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:8988501 original size:47 final size:46
Alignment explanation
Indices: 8988398--8988521 Score: 167
Period size: 47 Copynumber: 2.7 Consensus size: 46
8988388 ATTCATATAT
* * * * *
8988398 CGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
* * *
8988444 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAC
8988491 CGATGCCATATCCCAGATATGGTCTTATACG
1 CGATGCCATATCCCAGATATGGTCTTATACG
8988522 GAAATCACTT
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
46 27 0.40
47 41 0.60
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:8988595 original size:31 final size:30
Alignment explanation
Indices: 8988557--8988663 Score: 160
Period size: 31 Copynumber: 3.5 Consensus size: 30
8988547 TAGCCGAAGA
*
8988557 TACCACTTTTCACTGATCAGGTAGTCGGAGT
1 TACCACTTTTCACTGATCAGGTAG-CGGAGC
*
8988588 TACCACTTTTCACTGATCAGGTAGCCAGAGC
1 TACCACTTTTCACTGATCAGGTAG-CGGAGC
*
8988619 TACCACTTTTCACTGATCAGGTAGCTGAAGC
1 TACCACTTTTCACTGATCAGGTAGC-GGAGC
8988650 TACCACTTTTCACT
1 TACCACTTTTCACT
8988664 TGTCATTTGT
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
30 1 0.01
31 69 0.99
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (30 bp):
TACCACTTTTCACTGATCAGGTAGCGGAGC
Found at i:8988745 original size:50 final size:51
Alignment explanation
Indices: 8988639--8988766 Score: 188
Period size: 50 Copynumber: 2.5 Consensus size: 51
8988629 CACTGATCAG
* * * *
8988639 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGCCATTTGTCATTGATCAGATAAGT
*
8988690 GTAGCCGAAGCTATCACTTATCACTT-CCACTTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGCCA-TTTGTCATTGATCAGATAAGT
8988740 GTAGCCGAAGCTATCACTTATCACTTG
1 GTAGCCGAAGCTATCACTTATCACTTG
8988767 TTGCCATGAT
Statistics
Matches: 70, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
50 44 0.63
51 26 0.37
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.34
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGCCATTTGTCATTGATCAGATAAGT
Found at i:8992565 original size:20 final size:19
Alignment explanation
Indices: 8992522--8992570 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
8992512 AATAATTTTC
*
8992522 AAAAAT-TAAAAATATTTA
1 AAAAATCTAAAAATATATA
*
8992540 AGAAATCTAAAGAATATATA
1 AAAAATCTAAA-AATATATA
8992560 AAAAATGCTAA
1 AAAAAT-CTAA
8992571 CTTATAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 5 0.20
19 4 0.16
20 12 0.48
21 4 0.16
ACGTcount: A:0.63, C:0.04, G:0.06, T:0.27
Consensus pattern (19 bp):
AAAAATCTAAAAATATATA
Found at i:8998164 original size:164 final size:164
Alignment explanation
Indices: 8997888--8998216 Score: 541
Period size: 164 Copynumber: 2.0 Consensus size: 164
8997878 ACACGGATAC
* *
8997888 TTCACGAAAAGTAGAGTCAGAGCAACATAGGTAGCAGCTGATTGAACTGTTCAATCATGTCAAAG
1 TTCAAGAAAAGTAGAGTCAGAGCAACATAGGTAGCACCTGATTGAACTGTTCAATCATGTCAAAG
* * *
8997953 TTTTAGATGATGAATAGCCGTTGAAAGCAATTAAATCTGTGTCCAACAATTATTTTTTGTTGGCT
66 TTTTAGATGATGAATACCCGTTGAAAGCAATTAAATCTGTGTCCAACAATTATCTTTTATTGGCT
**
8998018 TTACTTCGTATGGTAAAAGATTTTTTCTCGATTG
131 TTACTTCGTATGGTAAAAGATTTTGGCTCGATTG
* * *
8998052 TTCAAGAAAAGTAGAGTCGGAGCAACATTGGTAGCACCTGATTGAACTGTTCAGTCATGTCAAAG
1 TTCAAGAAAAGTAGAGTCAGAGCAACATAGGTAGCACCTGATTGAACTGTTCAATCATGTCAAAG
* *
8998117 TTTTAGATGATGAATACCCTTTGGAAGCAATTAAATCTGTGTCCAACAATTATCTTTTATTGGCT
66 TTTTAGATGATGAATACCCGTTGAAAGCAATTAAATCTGTGTCCAACAATTATCTTTTATTGGCT
*
8998182 TTACTTTGTATGGTAAAAGATTTTGGCTCGATTG
131 TTACTTCGTATGGTAAAAGATTTTGGCTCGATTG
8998216 T
1 T
8998217 AATCTTCATA
Statistics
Matches: 152, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
164 152 1.00
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.35
Consensus pattern (164 bp):
TTCAAGAAAAGTAGAGTCAGAGCAACATAGGTAGCACCTGATTGAACTGTTCAATCATGTCAAAG
TTTTAGATGATGAATACCCGTTGAAAGCAATTAAATCTGTGTCCAACAATTATCTTTTATTGGCT
TTACTTCGTATGGTAAAAGATTTTGGCTCGATTG
Found at i:9001567 original size:15 final size:15
Alignment explanation
Indices: 9001549--9001581 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
9001539 TATGATGTTT
*
9001549 AAATTTATTTTATTA
1 AAATTTATTTCATTA
9001564 AAATTTATTTCATTA
1 AAATTTATTTCATTA
9001579 AAA
1 AAA
9001582 AAATACTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (15 bp):
AAATTTATTTCATTA
Found at i:9005813 original size:32 final size:31
Alignment explanation
Indices: 9005753--9005847 Score: 129
Period size: 31 Copynumber: 3.0 Consensus size: 31
9005743 AAATAAAAGG
*
9005753 GCTGCATAACAAAGGAAAAAAAAA-AGTTAAT
1 GCTGCATAAGAAA-GAAAAAAAAATAGTTAAT
*
9005784 GCTGCCTAAGAAAGAAAAAAAAAATAGTTAAT
1 GCTGCATAAGAAAG-AAAAAAAAATAGTTAAT
**
9005816 GCTGTGTAAGAAAGAAAAAAAAATAGTTAAT
1 GCTGCATAAGAAAGAAAAAAAAATAGTTAAT
9005847 G
1 G
9005848 TATTGTCTTA
Statistics
Matches: 58, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
30 1 0.02
31 38 0.66
32 19 0.33
ACGTcount: A:0.56, C:0.07, G:0.18, T:0.19
Consensus pattern (31 bp):
GCTGCATAAGAAAGAAAAAAAAATAGTTAAT
Found at i:9006530 original size:13 final size:12
Alignment explanation
Indices: 9006502--9006551 Score: 57
Period size: 12 Copynumber: 4.1 Consensus size: 12
9006492 TTTATCAGTG
9006502 AAAAATATACAT
1 AAAAATATACAT
*
9006514 AAAAATATCCAT
1 AAAAATATACAT
9006526 AAAAA-ATACAT
1 AAAAATATACAT
*
9006537 ATGACAATATACAT
1 A--AAAATATACAT
9006551 A
1 A
9006552 CAATGTTATA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
11 6 0.19
12 16 0.50
13 3 0.09
14 7 0.22
ACGTcount: A:0.62, C:0.12, G:0.02, T:0.24
Consensus pattern (12 bp):
AAAAATATACAT
Found at i:9010090 original size:42 final size:42
Alignment explanation
Indices: 9010000--9010082 Score: 98
Period size: 42 Copynumber: 2.0 Consensus size: 42
9009990 AAAATCTTGT
*
9010000 AAGAGCTT-AACGAAAACCCAAAAGGGTTAAACTGAAGCTCAA
1 AAGAG-TTGAACGAAAACCCAAAAGGGTTAAACTGAAACTCAA
* **
9010042 AAGAGTTGAACGGAAACCCATTAGGGTTAAA-TGAAAACTCA
1 AAGAGTTGAACGAAAACCCAAAAGGGTTAAACTG-AAACTCA
9010083 TATGAGTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
41 4 0.11
42 31 0.89
ACGTcount: A:0.46, C:0.17, G:0.20, T:0.17
Consensus pattern (42 bp):
AAGAGTTGAACGAAAACCCAAAAGGGTTAAACTGAAACTCAA
Found at i:9011849 original size:14 final size:14
Alignment explanation
Indices: 9011830--9011862 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
9011820 GCATCTCTAT
9011830 TTCTTCTCT-TCTTC
1 TTCTTCT-TATCTTC
9011844 TTCTTCTTATCTTC
1 TTCTTCTTATCTTC
9011858 TTCTT
1 TTCTT
9011863 TTACTGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 1 0.06
14 17 0.94
ACGTcount: A:0.03, C:0.30, G:0.00, T:0.67
Consensus pattern (14 bp):
TTCTTCTTATCTTC
Found at i:9017398 original size:14 final size:14
Alignment explanation
Indices: 9017370--9017430 Score: 68
Period size: 14 Copynumber: 4.2 Consensus size: 14
9017360 TAATTATAAA
9017370 TAAATCTTAAAATCT
1 TAAAT-TTAAAATCT
*
9017385 TAAATTTAATATCT
1 TAAATTTAAAATCT
* * *
9017399 TAAACCTTAAATTTT
1 TAAA-TTTAAAATCT
9017414 TAAATTTAAAATCT
1 TAAATTTAAAATCT
9017428 TAA
1 TAA
9017431 GTTGGAGAAT
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
14 22 0.59
15 15 0.41
ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44
Consensus pattern (14 bp):
TAAATTTAAAATCT
Found at i:9017402 original size:29 final size:29
Alignment explanation
Indices: 9017370--9017430 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
9017360 TAATTATAAA
* *
9017370 TAAATCTTAAAATCTTAAATTTAATATCT
1 TAAACCTTAAAATCTTAAATTTAAAATCT
* *
9017399 TAAACCTTAAATTTTTAAATTTAAAATCT
1 TAAACCTTAAAATCTTAAATTTAAAATCT
9017428 TAA
1 TAA
9017431 GTTGGAGAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44
Consensus pattern (29 bp):
TAAACCTTAAAATCTTAAATTTAAAATCT
Found at i:9018610 original size:54 final size:54
Alignment explanation
Indices: 9018544--9018652 Score: 209
Period size: 54 Copynumber: 2.0 Consensus size: 54
9018534 TAATCCTCCA
*
9018544 TATTATAGTTTTGTGAGATGGATTATTAACTGCAAATCACCAATTAATCTGACT
1 TATTATAGTTTTGTGAGATGGACTATTAACTGCAAATCACCAATTAATCTGACT
9018598 TATTATAGTTTTGTGAGATGGACTATTAACTGCAAATCACCAATTAATCTGACT
1 TATTATAGTTTTGTGAGATGGACTATTAACTGCAAATCACCAATTAATCTGACT
9018652 T
1 T
9018653 TAAAAAAAAT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.39
Consensus pattern (54 bp):
TATTATAGTTTTGTGAGATGGACTATTAACTGCAAATCACCAATTAATCTGACT
Found at i:9020020 original size:40 final size:40
Alignment explanation
Indices: 9019953--9020036 Score: 152
Period size: 40 Copynumber: 2.1 Consensus size: 40
9019943 CATTAAAGTT
9019953 TAAATTTTTATATTACCAAAGTAAAAAAAAAAATAGGGTG
1 TAAATTTTTATATTACCAAAGTAAAAAAAAAAATAGGGTG
9019993 TAAATTTTTTATATTACCAAAGT-AAAAAAAAAATAGGGTG
1 TAAA-TTTTTATATTACCAAAGTAAAAAAAAAAATAGGGTG
9020033 TAAA
1 TAAA
9020037 CTCTTATTAG
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
40 25 0.58
41 18 0.42
ACGTcount: A:0.52, C:0.05, G:0.12, T:0.31
Consensus pattern (40 bp):
TAAATTTTTATATTACCAAAGTAAAAAAAAAAATAGGGTG
Found at i:9021816 original size:10 final size:9
Alignment explanation
Indices: 9021791--9021815 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
9021781 AAATAATTAA
9021791 TTAAAAAGT
1 TTAAAAAGT
9021800 TTAAAAAGT
1 TTAAAAAGT
9021809 TTAAAAA
1 TTAAAAA
9021816 AAATAAATCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (9 bp):
TTAAAAAGT
Found at i:9023894 original size:11 final size:11
Alignment explanation
Indices: 9023871--9023917 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
9023861 TATCCCTAAA
9023871 AACC-AAACACC
1 AACCTAAAC-CC
9023882 AACCTAAACCC
1 AACCTAAACCC
**
9023893 AACCTAAACTA
1 AACCTAAACCC
9023904 AACCTAAGACCC
1 AACCTAA-ACCC
9023916 AA
1 AA
9023918 ATCAGAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
11 22 0.73
12 8 0.27
ACGTcount: A:0.51, C:0.38, G:0.02, T:0.09
Consensus pattern (11 bp):
AACCTAAACCC
Found at i:9032910 original size:68 final size:68
Alignment explanation
Indices: 9032793--9033541 Score: 998
Period size: 68 Copynumber: 11.0 Consensus size: 68
9032783 AAAATTACAA
** *
9032793 ATCTCTTCTCCCTGAAATGGTATTAGAGCGGCTAGAAGCCACAACAGATCTCCTTGAAGTTTCAG
1 ATCTCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAGATCTCCTTGAAGTTTCAG
*
9032858 TGG
66 CGG
* * * * *
9032861 ATCTTTTCTCCCTGAAATGGCGTTGGAGTGGCTAGAAGCCACAATAGATCTCTTTAAAGTTTCAG
1 ATCTCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAGATCTCCTTGAAGTTTCAG
*
9032926 CAG
66 CGG
* * * * * *
9032929 ATCTCTTCTCTCTGAAATGGCTTTGGAGTGGCTAGAAGCCATAGCAGATCTGCTTGAAGTTTCAG
1 ATCTCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAGATCTCCTTGAAGTTTCAG
9032994 CGG
66 CGG
* ** * * *
9032997 ATCTCCTCTATCTGAAATGGCATTGGAGTGGCTAGAAGCCATAACAGATCTCCTTGAAGTTTCAG
1 ATCTCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAGATCTCCTTGAAGTTTCAG
9033062 CGG
66 CGG
* *
9033065 ATCTTTTCTCCCTAAAATGGCGTTGGAGCGGCTAGAAGCCACAACAGATCTCCTTGAAGTTTCAG
1 ATCTCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAGATCTCCTTGAAGTTTCAG
9033130 CGG
66 CGG
* * * * * **
9033133 ATCTTTTCTCCCTGAAATAGCATTGGAGCGGTTAAAAGCCACCGCAGATCTCCTTGAAGTTTCAG
1 ATCTCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAGATCTCCTTGAAGTTTCAG
*
9033198 AGG
66 CGG
* *
9033201 ATCTTTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGGCACAACAGATCTCCTTGAAGTTTCAG
1 ATCTCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAGATCTCCTTGAAGTTTCAG
9033266 CGG
66 CGG
* ** *
9033269 ATCTCCTCTCCCTGAAATGGCGTTAAAGCGGCTAGAAGCCACAACAGATCTCTTTGAAGTTTCAG
1 ATCTCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAGATCTCCTTGAAGTTTCAG
9033334 CGG
66 CGG
* * *
9033337 ATCTCATCTCCCTAAAATGGCATTGGAGCGGCTAGAAGCCACAACAGATCT-CTTCGAAGTTTC-
1 ATCTCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAGATCTCCTT-GAAGTTTCA
9033400 GTCGG
65 G-CGG
* * * ** *
9033405 ATCTCTTCTCCTTGAAATAGCGTTGAAGCGGCTAGAAGCCACAACAGATCTCCTCAAAGTTTCAT
1 ATCTCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAGATCTCCTTGAAGTTTCAG
9033470 CGG
66 CGG
* * * * *
9033473 ATCTCTTTTCGCAGAAATGGTGTTGGAGCGGCTAGAAGCCATAACAGATCTCCTTGAAGTTTCAG
1 ATCTCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAGATCTCCTTGAAGTTTCAG
9033538 CGG
66 CGG
9033541 A
1 A
9033542 GTAAATTGAA
Statistics
Matches: 596, Mismatches: 81, Indels: 8
0.87 0.12 0.01
Matches are distributed among these distances:
67 3 0.01
68 591 0.99
69 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (68 bp):
ATCTCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAGATCTCCTTGAAGTTTCAG
CGG
Found at i:9034093 original size:11 final size:11
Alignment explanation
Indices: 9034070--9034116 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
9034060 TATCCCTAAA
9034070 AACC-AAACACC
1 AACCTAAAC-CC
9034081 AACCTAAACCC
1 AACCTAAACCC
**
9034092 AACCTAAACTA
1 AACCTAAACCC
9034103 AACCTAAGACCC
1 AACCTAA-ACCC
9034115 AA
1 AA
9034117 ATCAGAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
11 22 0.73
12 8 0.27
ACGTcount: A:0.51, C:0.38, G:0.02, T:0.09
Consensus pattern (11 bp):
AACCTAAACCC
Found at i:9034498 original size:19 final size:19
Alignment explanation
Indices: 9034476--9034520 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
9034466 GAATCTTTTC
* *
9034476 TTCTTTTTTTTCTTCGCTT
1 TTCTTTCTTTTCATCGCTT
*
9034495 TTCTTTCTTTTCATCTCTT
1 TTCTTTCTTTTCATCGCTT
9034514 TTCTTTC
1 TTCTTTC
9034521 CTTTGTCTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.02, C:0.24, G:0.02, T:0.71
Consensus pattern (19 bp):
TTCTTTCTTTTCATCGCTT
Found at i:9035509 original size:13 final size:12
Alignment explanation
Indices: 9035486--9035517 Score: 55
Period size: 13 Copynumber: 2.6 Consensus size: 12
9035476 TTTATTTATG
9035486 TATTTTTTATTT
1 TATTTTTTATTT
9035498 TATTTCTTTATTT
1 TATTT-TTTATTT
9035511 TATTTTT
1 TATTTTT
9035518 CGTTATCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (12 bp):
TATTTTTTATTT
Found at i:9035570 original size:18 final size:18
Alignment explanation
Indices: 9035547--9035588 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
9035537 TTAGCTCGTG
9035547 TGCTTGCTAATTCCTTTA
1 TGCTTGCTAATTCCTTTA
9035565 TGCTTGCTAATTCCTTTA
1 TGCTTGCTAATTCCTTTA
9035583 TGCTTG
1 TGCTTG
9035589 TCTCTTATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.14, C:0.21, G:0.14, T:0.50
Consensus pattern (18 bp):
TGCTTGCTAATTCCTTTA
Found at i:9042735 original size:18 final size:17
Alignment explanation
Indices: 9042714--9042784 Score: 65
Period size: 18 Copynumber: 4.1 Consensus size: 17
9042704 AAATTATAAA
9042714 AAAAACTAAAAAATCATT
1 AAAAACTAAAAAAT-ATT
*
9042732 AAAAACCCAAAAAATATT
1 AAAAA-CTAAAAAATATT
* *
9042750 -TAAACTTAAAAAATTATA
1 AAAAAC-TAAAAAA-TATT
9042768 AAAAACTAAAAAA-ATT
1 AAAAACTAAAAAATATT
9042784 A
1 A
9042785 TAATCTATTT
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
16 4 0.09
17 9 0.21
18 18 0.42
19 12 0.28
ACGTcount: A:0.68, C:0.10, G:0.00, T:0.23
Consensus pattern (17 bp):
AAAAACTAAAAAATATT
Found at i:9042735 original size:19 final size:19
Alignment explanation
Indices: 9042681--9042780 Score: 64
Period size: 20 Copynumber: 5.3 Consensus size: 19
9042671 CGTGTCAAGA
**
9042681 AAAAAATCACTTAAAAATGT
1 AAAAAATCA-TTAAAAAACT
* * *
9042701 TAAAAATTATAAAAAAAACT
1 AAAAAATCAT-TAAAAAACT
* *
9042721 AAAAAATCATTAAAAACCC
1 AAAAAATCATTAAAAAACT
*
9042740 AAAAAAT-ATT--TAAACTT
1 AAAAAATCATTAAAAAAC-T
*
9042757 AAAAAATTA-TAAAAAACT
1 AAAAAATCATTAAAAAACT
9042775 AAAAAA
1 AAAAAA
9042781 ATTATAATCT
Statistics
Matches: 61, Mismatches: 14, Indels: 12
0.70 0.16 0.14
Matches are distributed among these distances:
16 3 0.05
17 8 0.13
18 11 0.18
19 18 0.30
20 21 0.34
ACGTcount: A:0.67, C:0.09, G:0.01, T:0.23
Consensus pattern (19 bp):
AAAAAATCATTAAAAAACT
Found at i:9042781 original size:19 final size:18
Alignment explanation
Indices: 9042702--9042787 Score: 68
Period size: 19 Copynumber: 4.6 Consensus size: 18
9042692 TAAAAATGTT
9042702 AAAAATTATAAAAAAAACTA
1 AAAAATTAT--AAAAAACTA
* * *
9042722 AAAAATCATTAAAAACCCA
1 AAAAATTA-TAAAAAACTA
**
9042741 AAAAA-TAT-TTAAACTTA
1 AAAAATTATAAAAAAC-TA
9042758 AAAAATTATAAAAAACTAA
1 AAAAATTATAAAAAACT-A
9042777 AAAAATTATAA
1 AAAAATTATAA
9042788 TCTATTTTTG
Statistics
Matches: 51, Mismatches: 10, Indels: 11
0.71 0.14 0.15
Matches are distributed among these distances:
16 3 0.06
17 7 0.14
18 5 0.10
19 28 0.55
20 7 0.14
21 1 0.02
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.23
Consensus pattern (18 bp):
AAAAATTATAAAAAACTA
Found at i:9044362 original size:36 final size:36
Alignment explanation
Indices: 9044322--9044392 Score: 83
Period size: 36 Copynumber: 2.0 Consensus size: 36
9044312 ATCAATTCAA
9044322 AAATA-GCCAAAGAT-TAAAAATAAAAATAAACCTTGC
1 AAATATGCCAAA-ATAT-AAAATAAAAATAAACCTTGC
* * *
9044358 AAATATGTCAAAATATTAAATAAAATTAAACCTTG
1 AAATATGCCAAAATATAAAATAAAAATAAACCTTG
9044393 GCACACCCAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
36 24 0.80
37 6 0.20
ACGTcount: A:0.56, C:0.11, G:0.07, T:0.25
Consensus pattern (36 bp):
AAATATGCCAAAATATAAAATAAAAATAAACCTTGC
Found at i:9051587 original size:26 final size:26
Alignment explanation
Indices: 9051558--9051610 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
9051548 AAGAAAATCT
*
9051558 AAAATAAAATATAAAAA-AATTCTAAA
1 AAAATAAAACATAAAAAGAATT-TAAA
* *
9051584 AAAATGATACATAAAAAGAATTTAAA
1 AAAATAAAACATAAAAAGAATTTAAA
9051610 A
1 A
9051611 TGGATGTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.70, C:0.04, G:0.04, T:0.23
Consensus pattern (26 bp):
AAAATAAAACATAAAAAGAATTTAAA
Found at i:9051997 original size:46 final size:44
Alignment explanation
Indices: 9051929--9052055 Score: 115
Period size: 43 Copynumber: 2.9 Consensus size: 44
9051919 ATATTAGTAT
*
9051929 ATAAATAGAAATA-AAAAT-ATAATAATAGTAGAAATATA-AATA
1 ATAAATAAAAATAGAAAATAATAATAATAGTAGAAATATACAA-A
* *
9051971 GATAAA-AAAAATTAGATAAATAATAATAGTATTAG-AATA-ACAAA
1 -ATAAATAAAAA-TAGA-AAATAATAATAATAGTAGAAATATACAAA
*
9052015 ATAAATATAAATAGAAACATAATAATAATAGTA-ATAATATA
1 ATAAATAAAAATAGAAA-ATAATAATAATAGTAGA-AATATA
9052056 TTAAATTAGT
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
42 6 0.09
43 29 0.43
44 11 0.16
45 11 0.16
46 11 0.16
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.27
Consensus pattern (44 bp):
ATAAATAAAAATAGAAAATAATAATAATAGTAGAAATATACAAA
Found at i:9062656 original size:6 final size:6
Alignment explanation
Indices: 9062647--9062674 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
9062637 CTTATATGTA
9062647 TATATG TATATG TATATG TATATG TATA
1 TATATG TATATG TATATG TATATG TATA
9062675 ATTCTGAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (6 bp):
TATATG
Found at i:9067190 original size:23 final size:22
Alignment explanation
Indices: 9067127--9067190 Score: 55
Period size: 18 Copynumber: 3.0 Consensus size: 22
9067117 ATATCCATTT
*
9067127 TTTTTAAATTAATAGAAAATAATA
1 TTTTTAAATTAATAG-AAAT-CTA
*
9067151 TTTTAAAATT-AT---AATCTA
1 TTTTTAAATTAATAGAAATCTA
9067169 TTTTTAAATTAATAGAAGATCT
1 TTTTTAAATTAATAGAA-ATCT
9067191 TAAAATTATA
Statistics
Matches: 32, Mismatches: 3, Indels: 11
0.70 0.07 0.24
Matches are distributed among these distances:
18 11 0.34
19 5 0.16
22 1 0.03
23 6 0.19
24 9 0.28
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (22 bp):
TTTTTAAATTAATAGAAATCTA
Done.