Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 270 of 290
Found at i:86765985 original size:31 final size:31
Alignment explanation
Indices: 86765930--86765993 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
86765920 GCGTGTGTAA
* * * *
86765930 GGCTGGCCAATTGGGCTATGTGGGCTACATG
1 GGCTGGCCAATTAGGCCATATGGGCCACATG
*
86765961 GGCTGGCCAATTAGGCCCTATGGGCCACATG
1 GGCTGGCCAATTAGGCCATATGGGCCACATG
86765992 GG
1 GG
86765994 AATGTGGGCC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.17, C:0.23, G:0.38, T:0.22
Consensus pattern (31 bp):
GGCTGGCCAATTAGGCCATATGGGCCACATG
Found at i:86766320 original size:15 final size:15
Alignment explanation
Indices: 86766300--86766329 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
86766290 CATTTTATCT
*
86766300 ATATTAGGATAATTA
1 ATATTAAGATAATTA
86766315 ATATTAAGATAATTA
1 ATATTAAGATAATTA
86766330 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:86766373 original size:10 final size:10
Alignment explanation
Indices: 86766354--86766385 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
86766344 TTTTAGGATT
86766354 TTAT-TTTAA
1 TTATCTTTAA
86766363 TTATCTTTAA
1 TTATCTTTAA
86766373 TTATCTTTAA
1 TTATCTTTAA
86766383 TTA
1 TTA
86766386 AATGTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:86770095 original size:6 final size:6
Alignment explanation
Indices: 86770084--86770140 Score: 53
Period size: 6 Copynumber: 9.2 Consensus size: 6
86770074 AGGCAACCCA
* * *
86770084 ATTTTT ATTTTT ATTTTT ATTTATT TTTTCTT ATTATT -TTATT ATTTATT
1 ATTTTT ATTTTT ATTTTT ATTT-TT ATTT-TT ATTTTT ATTTTT ATTT-TT
86770134 ATTTTT A
1 ATTTTT A
86770141 GATATTAATA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
5 5 0.12
6 23 0.53
7 15 0.35
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (6 bp):
ATTTTT
Found at i:86770112 original size:18 final size:19
Alignment explanation
Indices: 86770084--86770140 Score: 57
Period size: 17 Copynumber: 3.1 Consensus size: 19
86770074 AGGCAACCCA
86770084 ATTTT-TATTTTTATTTTT
1 ATTTTATATTTTTATTTTT
* *
86770102 A-TTTAT-TTTTTCTTATT
1 ATTTTATATTTTTATTTTT
86770119 ATTTTATTATTTATTATTTTT
1 ATTTTA-TATTT-TTATTTTT
86770140 A
1 A
86770141 GATATTAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
17 13 0.43
18 6 0.20
19 1 0.03
20 3 0.10
21 7 0.23
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (19 bp):
ATTTTATATTTTTATTTTT
Found at i:86770146 original size:28 final size:28
Alignment explanation
Indices: 86770092--86770147 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
86770082 CAATTTTTAT
* *
86770092 TTTTATTTTTATTTATTTTTTCTTATTA
1 TTTTATTTTTATTTATTTTTACATATTA
*
86770120 TTTTATTATTTA-TTATTTTTAGATATTA
1 TTTTATT-TTTATTTATTTTTACATATTA
86770148 ATAAAATTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 20 0.83
29 4 0.17
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.73
Consensus pattern (28 bp):
TTTTATTTTTATTTATTTTTACATATTA
Found at i:86771069 original size:5 final size:4
Alignment explanation
Indices: 86771049--86771101 Score: 54
Period size: 4 Copynumber: 13.2 Consensus size: 4
86771039 ACATACATAC
* * * *
86771049 ATAA ATAA ATAA ATAAA ATAA A-AA ATAA AAAA ATAT ATAT GTAA ATAA
1 ATAA ATAA ATAA AT-AA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA
86771097 ATAA A
1 ATAA A
86771102 ATTTGGGACT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
3 3 0.07
4 34 0.83
5 4 0.10
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.25
Consensus pattern (4 bp):
ATAA
Found at i:86771673 original size:15 final size:15
Alignment explanation
Indices: 86771653--86771682 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
86771643 CATTTTATCT
*
86771653 ATATTAGGATAATTA
1 ATATTAAGATAATTA
86771668 ATATTAAGATAATTA
1 ATATTAAGATAATTA
86771683 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:86779900 original size:18 final size:18
Alignment explanation
Indices: 86779864--86780007 Score: 211
Period size: 18 Copynumber: 7.9 Consensus size: 18
86779854 AATCATATCT
*
86779864 TCTAAGATTGTATATCATA
1 TCTAAGATTGCA-ATCATA
86779883 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
86779901 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
86779918 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
86779936 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
86779954 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
*
86779971 TCTAAGATTGCATATCACA
1 TCTAAGATTGCA-ATCATA
86779990 TCTAAGATTGCAGATCAT
1 TCTAAGATTGCA-ATCAT
86780008 TGAAGATTAT
Statistics
Matches: 114, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
17 32 0.28
18 50 0.44
19 32 0.28
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (18 bp):
TCTAAGATTGCAATCATA
Found at i:86779922 original size:35 final size:36
Alignment explanation
Indices: 86779864--86780007 Score: 213
Period size: 35 Copynumber: 4.0 Consensus size: 36
86779854 AATCATATCT
86779864 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCAATCATA
86779901 TCTAAGATTG-TATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGATATCATATCTAAGATTGCAATCATA
*
86779936 TCTAAGATTGCA-ATCATATCTAAGATTG-TATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCAATCATA
*
86779971 TCTAAGATTGCATATCACATCTAAGATTGCAGATCAT
1 TCTAAGATTG-ATATCATATCTAAGATTGCA-ATCAT
86780008 TGAAGATTAT
Statistics
Matches: 99, Mismatches: 3, Indels: 9
0.89 0.03 0.08
Matches are distributed among these distances:
35 53 0.54
36 31 0.31
37 10 0.10
38 5 0.05
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (36 bp):
TCTAAGATTGATATCATATCTAAGATTGCAATCATA
Found at i:86780015 original size:53 final size:54
Alignment explanation
Indices: 86779864--86780007 Score: 254
Period size: 53 Copynumber: 2.7 Consensus size: 54
86779854 AATCATATCT
*
86779864 TCTAAGATTGTATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
86779918 TCTAAGATTGCA-ATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
*
86779971 TCTAAGATTGCATATCACATCTAAGATTGCAGATCAT
1 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCAT
86780008 TGAAGATTAT
Statistics
Matches: 86, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
53 53 0.62
54 28 0.33
55 5 0.06
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
Found at i:86780160 original size:21 final size:20
Alignment explanation
Indices: 86780123--86780161 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
86780113 TTGGACTTCG
**
86780123 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGACTTATTAT
86780143 TTTTGTTTTTGGACTTATT
1 TTTT-TTTTTGGACTTATT
86780162 TCTGGGCCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTGGACTTATTAT
Found at i:86795676 original size:18 final size:18
Alignment explanation
Indices: 86795655--86795700 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
86795645 ATACGGATGC
* *
86795655 AGATGCAGATGCAAATAA
1 AGATACAGATACAAATAA
*
86795673 AGATACAGATACAAATAT
1 AGATACAGATACAAATAA
*
86795691 AGTTACAGAT
1 AGATACAGAT
86795701 GTTGATACAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.50, C:0.11, G:0.17, T:0.22
Consensus pattern (18 bp):
AGATACAGATACAAATAA
Found at i:86800197 original size:19 final size:19
Alignment explanation
Indices: 86800173--86800211 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
86800163 TTTGAAAGAT
86800173 AGAATTTCCTGCTACTCGG
1 AGAATTTCCTGCTACTCGG
86800192 AGAATTTCCTGCTACTCGG
1 AGAATTTCCTGCTACTCGG
86800211 A
1 A
86800212 AAAGGTCCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.31
Consensus pattern (19 bp):
AGAATTTCCTGCTACTCGG
Found at i:86805644 original size:15 final size:15
Alignment explanation
Indices: 86805612--86805640 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
86805602 ATTTTCTATG
86805612 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
86805627 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
86805641 ATTTTCATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:86814921 original size:45 final size:41
Alignment explanation
Indices: 86814844--86814954 Score: 123
Period size: 45 Copynumber: 2.6 Consensus size: 41
86814834 GATACGCGTT
* * ** *
86814844 TTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGG
1 TTCGTGTAAGACCATGTCTGGGACATCAGCATCG-TAT-T-TGA
*
86814888 TTATGTGTAAGACCATGTCTGGGACATCAGCATCGTATTTGA
1 TT-CGTGTAAGACCATGTCTGGGACATCAGCATCGTATTTGA
*
86814930 TTCGTGTAAGACCCTGTCTGGGACA
1 TTCGTGTAAGACCATGTCTGGGACA
86814955 GTGGCATTGA
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
41 21 0.36
42 4 0.07
43 1 0.02
44 5 0.09
45 27 0.47
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.31
Consensus pattern (41 bp):
TTCGTGTAAGACCATGTCTGGGACATCAGCATCGTATTTGA
Found at i:86823819 original size:30 final size:30
Alignment explanation
Indices: 86823785--86823841 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
86823775 AAATAAGTCT
*
86823785 AAAATA-TTATTTTTCAGTTTTTAAGGGTTA
1 AAAATATTTATTTTT-AGCTTTTAAGGGTTA
86823815 AAAATATTTATTTTTAGCTTTTAAGGG
1 AAAATATTTATTTTTAGCTTTTAAGGG
86823842 CCCAAAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 17 0.68
31 8 0.32
ACGTcount: A:0.33, C:0.04, G:0.14, T:0.49
Consensus pattern (30 bp):
AAAATATTTATTTTTAGCTTTTAAGGGTTA
Found at i:86823849 original size:30 final size:30
Alignment explanation
Indices: 86823785--86823849 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
86823775 AAATAAGTCT
* **
86823785 AAAATATTATTTTTCAGTTTTTAAGGGTTA
1 AAAATATTATTTTTCAGCTTTTAAGGGCCA
*
86823815 AAAATATTTATTTTT-AGCTTTTAAGGGCCC
1 AAAATA-TTATTTTTCAGCTTTTAAGGGCCA
86823845 AAAAT
1 AAAAT
86823850 TTCTTTTACC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 22 0.73
31 8 0.27
ACGTcount: A:0.35, C:0.08, G:0.12, T:0.45
Consensus pattern (30 bp):
AAAATATTATTTTTCAGCTTTTAAGGGCCA
Found at i:86824292 original size:5 final size:5
Alignment explanation
Indices: 86824282--86824321 Score: 80
Period size: 5 Copynumber: 8.0 Consensus size: 5
86824272 AATTTCACAT
86824282 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
86824322 CTAACTAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:86824506 original size:20 final size:21
Alignment explanation
Indices: 86824483--86824522 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
86824473 TTTCAAATGA
*
86824483 CATTTTTTATTTTT-ATTTTT
1 CATTTTTCATTTTTCATTTTT
86824503 CATTTTTCATTTTTCATTTT
1 CATTTTTCATTTTTCATTTT
86824523 CGGAAAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (21 bp):
CATTTTTCATTTTTCATTTTT
Found at i:86824509 original size:14 final size:14
Alignment explanation
Indices: 86824483--86824522 Score: 64
Period size: 13 Copynumber: 2.9 Consensus size: 14
86824473 TTTCAAATGA
*
86824483 CATTTTTTATTTTT
1 CATTTTTCATTTTT
86824497 -ATTTTTCATTTTT
1 CATTTTTCATTTTT
86824510 CATTTTTCATTTT
1 CATTTTTCATTTT
86824523 CGGAAAACAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 12 0.50
14 12 0.50
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (14 bp):
CATTTTTCATTTTT
Found at i:86824542 original size:6 final size:7
Alignment explanation
Indices: 86824483--86824522 Score: 64
Period size: 7 Copynumber: 5.9 Consensus size: 7
86824473 TTTCAAATGA
86824483 CATTTTT
1 CATTTTT
*
86824490 TATTTTT
1 CATTTTT
86824497 -ATTTTT
1 CATTTTT
86824503 CATTTTT
1 CATTTTT
86824510 CATTTTT
1 CATTTTT
86824517 CATTTT
1 CATTTT
86824523 CGGAAAACAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
6 6 0.19
7 25 0.81
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (7 bp):
CATTTTT
Found at i:86830387 original size:15 final size:15
Alignment explanation
Indices: 86830332--86830388 Score: 53
Period size: 14 Copynumber: 3.6 Consensus size: 15
86830322 TTTTATACTA
*
86830332 TAAAACATTTATTAT
1 TAAAATATTTATTAT
*
86830347 T-AAATATTTATGAATT
1 TAAAATATTTAT-TA-T
86830363 TAATATATATTTATTAT
1 TAA-A-ATATTTATTAT
86830380 TAAAATATT
1 TAAAATATT
86830389 AATAGATTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
14 9 0.26
15 7 0.21
16 3 0.09
17 5 0.15
18 2 0.06
19 8 0.24
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (15 bp):
TAAAATATTTATTAT
Found at i:86830463 original size:19 final size:18
Alignment explanation
Indices: 86830429--86830475 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
86830419 ATATTACTCA
*
86830429 TAATTTTAAA-TTATTAT
1 TAATTTAAAATTTATTAT
86830446 TAATGTTAAAATTTATTAT
1 TAAT-TTAAAATTTATTAT
86830465 TAATTTAAAAT
1 TAATTTAAAAT
86830476 CATAATATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 4 0.15
18 12 0.44
19 11 0.41
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (18 bp):
TAATTTAAAATTTATTAT
Found at i:86830484 original size:19 final size:19
Alignment explanation
Indices: 86830443--86830486 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
86830433 TTTAAATTAT
* *
86830443 TATTAATGTTAAAATTTAT
1 TATTAATGTTAAAATATAA
86830462 TATTAAT-TTAAAATCATAA
1 TATTAATGTTAAAAT-ATAA
86830481 TATTAA
1 TATTAA
86830487 ATTTTATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (19 bp):
TATTAATGTTAAAATATAA
Found at i:86830505 original size:32 final size:32
Alignment explanation
Indices: 86830446--86830507 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
86830436 AAATTATTAT
* *
86830446 TAATGTTAAAATTTATTATTAATTTAAAATCA
1 TAATATTAAAATTTATTATAAATTTAAAATCA
*
86830478 TAATATTAAATTTTATTA-AAATATTAAAAT
1 TAATATTAAAATTTATTATAAAT-TTAAAAT
86830508 ATGTTAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 3 0.12
32 23 0.88
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (32 bp):
TAATATTAAAATTTATTATAAATTTAAAATCA
Found at i:86833684 original size:3 final size:3
Alignment explanation
Indices: 86833678--86833714 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
86833668 GTTGTTGTTG
* *
86833678 TTA TTA TTA TTG TTA ATA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
86833715 ATTTCTTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:86841292 original size:11 final size:11
Alignment explanation
Indices: 86841278--86841318 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
86841268 TATTTTCTCC
86841278 CTATTTTGCTA
1 CTATTTTGCTA
*
86841289 CTATTTTACTA
1 CTATTTTGCTA
* *
86841300 TTATATTGCTA
1 CTATTTTGCTA
86841311 CTATTTTG
1 CTATTTTG
86841319 TTGTTATTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.22, C:0.15, G:0.07, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:86841391 original size:30 final size:30
Alignment explanation
Indices: 86841355--86841417 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
86841345 ACTTATTTTA
*
86841355 TTGTTAATTTTTTTATTATTGTA-AAGACAT
1 TTGTTAATTTTGTTATTATTGTAGAA-ACAT
*
86841385 TTGTTAATTTTGTTATTATTTTAGAAACAT
1 TTGTTAATTTTGTTATTATTGTAGAAACAT
86841415 TTG
1 TTG
86841418 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 28 0.93
31 2 0.07
ACGTcount: A:0.29, C:0.03, G:0.11, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTGTAGAAACAT
Found at i:86841521 original size:18 final size:18
Alignment explanation
Indices: 86841500--86841538 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
86841490 GAAATATTTA
*
86841500 TTTGAT-GTTTTTAGTATT
1 TTTGATGGTTTATA-TATT
86841518 TTTGATGGTTTATATATT
1 TTTGATGGTTTATATATT
86841536 TTT
1 TTT
86841539 TAAAATTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.18, C:0.00, G:0.15, T:0.67
Consensus pattern (18 bp):
TTTGATGGTTTATATATT
Found at i:86841538 original size:19 final size:18
Alignment explanation
Indices: 86841493--86841539 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 18
86841483 TTGTTGAGAA
*
86841493 ATATTTATTTGATGTTTTT
1 ATATTT-TTTGATGTTTAT
86841512 AGTA-TTTTTGATGGTTTAT
1 A-TATTTTTTGAT-GTTTAT
86841531 ATATTTTTT
1 ATATTTTTT
86841540 AAAATTATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
18 8 0.33
19 14 0.58
20 2 0.08
ACGTcount: A:0.21, C:0.00, G:0.13, T:0.66
Consensus pattern (18 bp):
ATATTTTTTGATGTTTAT
Found at i:86843390 original size:66 final size:66
Alignment explanation
Indices: 86843313--86843453 Score: 273
Period size: 66 Copynumber: 2.1 Consensus size: 66
86843303 TACATACAAA
86843313 CAGATAATAGAATACAAATAGTTCGACCTTAGCCATACAGGTATCGCATGCATAACAATTAGATA
1 CAGATAATAGAATACAAATAGTTCGACCTTAGCCATACAGGTATCGCATGCATAACAATTAGATA
86843378 T
66 T
86843379 CAGATAATAGAATACAAATAGTTCGACCTTAGCCATACAGGTATCGCATGCATAACAATTAGATA
1 CAGATAATAGAATACAAATAGTTCGACCTTAGCCATACAGGTATCGCATGCATAACAATTAGATA
86843444 T
66 T
*
86843445 CAGAAAATA
1 CAGATAATA
86843454 TGCCAACCAA
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 74 1.00
ACGTcount: A:0.43, C:0.18, G:0.15, T:0.25
Consensus pattern (66 bp):
CAGATAATAGAATACAAATAGTTCGACCTTAGCCATACAGGTATCGCATGCATAACAATTAGATA
T
Found at i:86848399 original size:17 final size:17
Alignment explanation
Indices: 86848377--86848409 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
86848367 ACAAGGGAGA
86848377 AAAAGAAAGAAAGAAAG
1 AAAAGAAAGAAAGAAAG
*
86848394 AAAAGAAAGGAAGAAA
1 AAAAGAAAGAAAGAAA
86848410 AGAGAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (17 bp):
AAAAGAAAGAAAGAAAG
Found at i:86848400 original size:13 final size:13
Alignment explanation
Indices: 86848378--86848412 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
86848368 CAAGGGAGAA
86848378 AAAG-AAAGAAAG
1 AAAGAAAAGAAAG
86848390 AAAGAAAAGAAAG
1 AAAGAAAAGAAAG
*
86848403 GAAGAAAAGA
1 AAAGAAAAGA
86848413 GAAAATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 4 0.19
13 17 0.81
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (13 bp):
AAAGAAAAGAAAG
Found at i:86849390 original size:51 final size:53
Alignment explanation
Indices: 86849328--86849445 Score: 132
Period size: 51 Copynumber: 2.2 Consensus size: 53
86849318 ATGTGTCGAC
* * *
86849328 TACTGTGACTGTTCCGGATTCGTTCCGAAGAGGTAC-TCTGTACC-TGATTGT
1 TACTGTTACTGTTCCAGATTCGTTCCGAAGAGGTACTTCTGTACCGTGACTGT
** * * * *
86849379 TACTGTTACTGTTTTAGATTTGTTCCGATGAGGTACTTTGTGTACCGTTACTGT
1 TACTGTTACTGTTCCAGATTCGTTCCGAAGAGGTAC-TTCTGTACCGTGACTGT
86849433 TACTGTTACTGTT
1 TACTGTTACTGTT
86849446 ATTGTTACGG
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
51 30 0.55
53 7 0.13
54 18 0.33
ACGTcount: A:0.17, C:0.18, G:0.23, T:0.42
Consensus pattern (53 bp):
TACTGTTACTGTTCCAGATTCGTTCCGAAGAGGTACTTCTGTACCGTGACTGT
Found at i:86849604 original size:18 final size:18
Alignment explanation
Indices: 86849583--86849635 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
86849573 GACTGCTACG
* *
86849583 GAATAATTGACTGTTATT
1 GAATAAATGACTATTATT
*
86849601 GAATAAATGACTATTACT
1 GAATAAATGACTATTATT
* *
86849619 GCATAACTGACTATTAT
1 GAATAAATGACTATTAT
86849636 AGAGTGCCGG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (18 bp):
GAATAAATGACTATTATT
Found at i:86855922 original size:38 final size:39
Alignment explanation
Indices: 86855874--86856016 Score: 191
Period size: 38 Copynumber: 3.7 Consensus size: 39
86855864 GTGTCCGGGC
86855874 TTAAAGTCCCGCAGGCTTCGTGCTGGTATTATATCCGGA
1 TTAAAGTCCCGCAGGCTTCGTGCTGGTATTATATCCGGA
* * *
86855913 TTAAA-TCCCGTAGGCTTCGTCCTGGTATTATATCCGGG
1 TTAAAGTCCCGCAGGCTTCGTGCTGGTATTATATCCGGA
* * *
86855951 TTAAA-TCCCGCAGGCTTAGTGCTGGTATTATATTCGAGC
1 TTAAAGTCCCGCAGGCTTCGTGCTGGTATTATATCCG-GA
* *
86855990 TTAAAGTCCCGCAGGTTTTGTGCTGGT
1 TTAAAGTCCCGCAGGCTTCGTGCTGGT
86856017 GACTGGATTC
Statistics
Matches: 92, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
38 62 0.67
39 11 0.12
40 19 0.21
ACGTcount: A:0.20, C:0.22, G:0.25, T:0.34
Consensus pattern (39 bp):
TTAAAGTCCCGCAGGCTTCGTGCTGGTATTATATCCGGA
Found at i:86861142 original size:11 final size:11
Alignment explanation
Indices: 86861126--86861150 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
86861116 TTCATTTCCC
86861126 TTTAATATTAG
1 TTTAATATTAG
86861137 TTTAATATTAG
1 TTTAATATTAG
86861148 TTT
1 TTT
86861151 TTACAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (11 bp):
TTTAATATTAG
Found at i:86867772 original size:25 final size:25
Alignment explanation
Indices: 86867703--86867823 Score: 134
Period size: 25 Copynumber: 4.8 Consensus size: 25
86867693 ATACACCACA
* * * * *
86867703 GCTCTCACGAGATTCCCGTTATTTA
1 GCTCTCATGAGCTTCTCGATATTTG
* * *
86867728 GCTCTTATGAGCATCCCGATATTTG
1 GCTCTCATGAGCTTCTCGATATTTG
* *
86867753 GCTCTCACGAGTTTCTCGATATTTG
1 GCTCTCATGAGCTTCTCGATATTTG
*
86867778 GCTCTCTTGAGCTTCTCGATATTTG
1 GCTCTCATGAGCTTCTCGATATTTG
*
86867803 GCTCTCTTGAGCTTCTCGATA
1 GCTCTCATGAGCTTCTCGATA
86867824 AATGACTCGC
Statistics
Matches: 82, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 82 1.00
ACGTcount: A:0.17, C:0.26, G:0.19, T:0.39
Consensus pattern (25 bp):
GCTCTCATGAGCTTCTCGATATTTG
Found at i:86867840 original size:50 final size:50
Alignment explanation
Indices: 86867744--86867842 Score: 117
Period size: 50 Copynumber: 2.0 Consensus size: 50
86867734 ATGAGCATCC
* ** * * **
86867744 CGATATTTGGCTCTCACGAGTTTCTCGATATTTGGCTCTCTTGAGCTTCT
1 CGATATTTGGCTCTCACGAGCTTCTCGATAAATGACTCGCAAGAGCTTCT
**
86867794 CGATATTTGGCTCTCTTGAGCTTCTCGATAAATGACTCGCAAGAGCTTC
1 CGATATTTGGCTCTCACGAGCTTCTCGATAAATGACTCGCAAGAGCTTC
86867843 CCGTTATACA
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 40 1.00
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.37
Consensus pattern (50 bp):
CGATATTTGGCTCTCACGAGCTTCTCGATAAATGACTCGCAAGAGCTTCT
Found at i:86867856 original size:25 final size:25
Alignment explanation
Indices: 86867828--86867875 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
86867818 TCGATAAATG
*
86867828 ACTCGCAAGAGCTTCCCGTTATACA
1 ACTCACAAGAGCTTCCCGTTATACA
* *
86867853 ACTCACATGAGTTTCCCGTTATA
1 ACTCACAAGAGCTTCCCGTTATA
86867876 TGGCTCGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (25 bp):
ACTCACAAGAGCTTCCCGTTATACA
Found at i:86868322 original size:42 final size:42
Alignment explanation
Indices: 86868275--86868358 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
86868265 AAATGGTAAG
86868275 TTAAATTCCATGTTAAACGAACTTACTAAACTTAAATGCTTA
1 TTAAATTCCATGTTAAACGAACTTACTAAACTTAAATGCTTA
* * *
86868317 TTAAATTCCATGTTATATGAACTTACTAAGCTTAAATGCTTA
1 TTAAATTCCATGTTAAACGAACTTACTAAACTTAAATGCTTA
86868359 CATTGTTTCA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (42 bp):
TTAAATTCCATGTTAAACGAACTTACTAAACTTAAATGCTTA
Found at i:86870676 original size:24 final size:24
Alignment explanation
Indices: 86870633--86870681 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
86870623 ACCTTCCCTG
* *
86870633 TTCTTTATTTTTTTTCTATTTTAT
1 TTCTTTATTTTTTATCTATTATAT
86870657 TTCTTTATTCTTTTAT-TATTATAT
1 TTCTTTATT-TTTTATCTATTATAT
86870681 T
1 T
86870682 ATATCATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (24 bp):
TTCTTTATTTTTTATCTATTATAT
Found at i:86872704 original size:13 final size:13
Alignment explanation
Indices: 86872688--86872713 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
86872678 AATTAAATTT
86872688 AAAAATGAAATAA
1 AAAAATGAAATAA
86872701 AAAAATGAAATAA
1 AAAAATGAAATAA
86872714 TATTAAGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (13 bp):
AAAAATGAAATAA
Found at i:86873406 original size:9 final size:9
Alignment explanation
Indices: 86873383--86873654 Score: 127
Period size: 9 Copynumber: 28.6 Consensus size: 9
86873373 TTTTTCCATA
86873383 AAAAATTATT
1 AAAAATTA-T
*
86873393 AAAAAATCAT
1 -AAAAATTAT
86873403 AAAAATTTTAT
1 AAAAA--TTAT
*
86873414 AAAAATCA-
1 AAAAATTAT
*
86873422 AAAAAATAT
1 AAAAATTAT
*
86873431 AAAAAATAT
1 AAAAATTAT
*
86873440 TAAAATTAAT
1 AAAAATT-AT
*
86873450 ATAAACTTAT
1 A-AAAATTAT
*
86873460 TAAAATTAT
1 AAAAATTAT
*
86873469 AAAAATACAT
1 AAAAAT-TAT
86873479 AAAAACTTAT
1 AAAAA-TTAT
*
86873489 AAATATTAT
1 AAAAATTAT
*
86873498 AAAAA-TAG
1 AAAAATTAT
86873506 AAAAATCTA-
1 AAAAAT-TAT
* *
86873515 ATAAATCAT
1 AAAAATTAT
86873524 AAAAATTAT
1 AAAAATTAT
86873533 AAAAATTAAT
1 AAAAATT-AT
*
86873543 AAAAAATAT
1 AAAAATTAT
**
86873552 TTAAATTAT
1 AAAAATTAT
*
86873561 AAAAATAGAAT
1 AAAAAT--TAT
* *
86873572 TAAAATTCTT
1 AAAAATT-AT
*
86873582 AAAAAATAAT
1 -AAAAATTAT
* *
86873592 AAAATTTGT
1 AAAAATTAT
*
86873601 AAAATTTAT
1 AAAAATTAT
*
86873610 AAAAAAAATAT
1 --AAAAATTAT
*
86873621 TAAAATTGAT
1 AAAAATT-AT
*
86873631 AAAACTTAT
1 AAAAATTAT
*
86873640 AAAAAGTACT
1 AAAAATTA-T
86873650 AAAAA
1 AAAAA
86873655 AATCATAAAA
Statistics
Matches: 196, Mismatches: 46, Indels: 39
0.70 0.16 0.14
Matches are distributed among these distances:
8 14 0.07
9 99 0.51
10 43 0.22
11 40 0.20
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.31
Consensus pattern (9 bp):
AAAAATTAT
Found at i:86873452 original size:21 final size:20
Alignment explanation
Indices: 86873426--86873467 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
86873416 AAATCAAAAA
86873426 AATATAAAAAATATTAAAATT
1 AATAT-AAAAATATTAAAATT
**
86873447 AATATAAACTTATTAAAATT
1 AATATAAAAATATTAAAATT
86873467 A
1 A
86873468 TAAAAATACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (20 bp):
AATATAAAAATATTAAAATT
Found at i:86873503 original size:38 final size:36
Alignment explanation
Indices: 86873383--86873566 Score: 140
Period size: 37 Copynumber: 4.9 Consensus size: 36
86873373 TTTTTCCATA
*
86873383 AAAAATTATTAAAAAATCATAAAAATTTTATAAAAATCA-
1 AAAAATTA-TAAAAAA-CATAAAAA--TTATAAAAATTAT
* * * *
86873422 AAAAAATATAAAAAATATTAAAATTAATATAAACTTAT
1 AAAAATTATAAAAAACATAAAAATT-ATA-AAAATTAT
* *
86873460 TAAAATTATAAAAATACATAAAAACTTATAAATATTAT
1 AAAAATTATAAAAA-ACATAAAAA-TTATAAAAATTAT
* * *
86873498 AAAAA-TAGAAAAATC-TAATAAATCATAAAAATTAT
1 AAAAATTATAAAAAACATAA-AAATTATAAAAATTAT
* **
86873533 AAAAATTAATAAAAAATATTTAAATTATAAAAAT
1 AAAAATT-ATAAAAAACATAAAAATTATAAAAAT
86873567 AGAATTAAAA
Statistics
Matches: 114, Mismatches: 22, Indels: 20
0.73 0.14 0.13
Matches are distributed among these distances:
35 21 0.18
36 8 0.07
37 36 0.32
38 30 0.26
39 17 0.15
40 2 0.02
ACGTcount: A:0.65, C:0.04, G:0.01, T:0.31
Consensus pattern (36 bp):
AAAAATTATAAAAAACATAAAAATTATAAAAATTAT
Found at i:86873504 original size:29 final size:29
Alignment explanation
Indices: 86873405--86873504 Score: 93
Period size: 29 Copynumber: 3.6 Consensus size: 29
86873395 AAAATCATAA
* *
86873405 AAATTTTATAAAAAT-CA-AAAAA-ATAT
1 AAATATTATAAAAATACATAAAAACTTAT
* * * *
86873431 AAAAAATATTAAAATTA-ATATAAACTTATT
1 AAATATTA-TAAAAATACATAAAAACTTA-T
86873461 AAA-ATTATAAAAATACATAAAAACTTAT
1 AAATATTATAAAAATACATAAAAACTTAT
86873489 AAATATTATAAAAATA
1 AAATATTATAAAAATA
86873505 GAAAAATCTA
Statistics
Matches: 58, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
26 5 0.09
27 7 0.12
28 15 0.26
29 27 0.47
30 4 0.07
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (29 bp):
AAATATTATAAAAATACATAAAAACTTAT
Found at i:86873525 original size:26 final size:26
Alignment explanation
Indices: 86873496--86873545 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
86873486 TATAAATATT
86873496 ATAAAAA-TAGAAAAATCTAATAAATC
1 ATAAAAATTAGAAAAAT-TAATAAATC
*
86873522 ATAAAAATTATAAAAATTAATAAA
1 ATAAAAATTAGAAAAATTAATAAA
86873546 AAATATTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.26
Consensus pattern (26 bp):
ATAAAAATTAGAAAAATTAATAAATC
Found at i:86873544 original size:19 final size:19
Alignment explanation
Indices: 86873383--86873654 Score: 116
Period size: 19 Copynumber: 14.3 Consensus size: 19
86873373 TTTTTCCATA
* *
86873383 AAAAATTATTAAAAAATCAT
1 AAAAATTA-TAAAAATTAAT
*
86873403 AAAAATTTTATAAAAATCAA-
1 AAAAA--TTATAAAAATTAAT
*
86873423 AAAAA-TATAAAAAAT-AT
1 AAAAATTATAAAAATTAAT
* *
86873440 TAAAATTAATATAAACTT-AT
1 AAAAATT-ATA-AAAATTAAT
*
86873460 TAAAATTATAAAAA-TACAT
1 AAAAATTATAAAAATTA-AT
*
86873479 AAAAACTTATAAATATT-AT
1 AAAAA-TTATAAAAATTAAT
*
86873498 AAAAA-TAGAAAAATCTAAT
1 AAAAATTATAAAAAT-TAAT
*
86873517 --AAATCATAAAAATT-AT
1 AAAAATTATAAAAATTAAT
*
86873533 AAAAATTAATAAAAAAT-AT
1 AAAAATT-ATAAAAATTAAT
** *
86873552 TTAAATTATAAAAATAGAAT
1 AAAAATTATAAAAAT-TAAT
* * *
86873572 TAAAATTCTTAAAAAATAAT
1 AAAAATT-ATAAAAATTAAT
* * * *
86873592 AAAATTTGTAAAATTTATAA
1 AAAAATTATAAAAATTA-AT
* * *
86873612 AAAAAATATTAAAATTGAT
1 AAAAATTATAAAAATTAAT
* * *
86873631 AAAACTTATAAAAAGTACT
1 AAAAATTATAAAAATTAAT
86873650 AAAAA
1 AAAAA
86873655 AATCATAAAA
Statistics
Matches: 187, Mismatches: 45, Indels: 41
0.68 0.16 0.15
Matches are distributed among these distances:
16 3 0.02
17 24 0.13
18 23 0.12
19 61 0.33
20 59 0.32
21 14 0.07
22 3 0.02
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.31
Consensus pattern (19 bp):
AAAAATTATAAAAATTAAT
Found at i:86873616 original size:30 final size:30
Alignment explanation
Indices: 86873582--86873644 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
86873572 TAAAATTCTT
*
86873582 AAAAAATAATAAAATTTG-TAAAATTTATAA
1 AAAAAATAATAAAA-TTGATAAAACTTATAA
*
86873612 AAAAAATATTAAAATTGATAAAACTTATAA
1 AAAAAATAATAAAATTGATAAAACTTATAA
86873642 AAA
1 AAA
86873645 GTACTAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 3 0.10
30 27 0.90
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.30
Consensus pattern (30 bp):
AAAAAATAATAAAATTGATAAAACTTATAA
Found at i:86873634 original size:49 final size:47
Alignment explanation
Indices: 86873525--86873634 Score: 109
Period size: 49 Copynumber: 2.3 Consensus size: 47
86873515 ATAAATCATA
* *
86873525 AAAATTATAAAAATTAATAAAAAATATTTAAATTATAAAAATAGAATT
1 AAAATTATAAAAAATAAT-AAAAATATTTAAATTATAAAAATAAAATT
*
86873573 AAAATTCTTAAAAAATAAT-AAAAT-TTGTAAAATTTATAAAAA-AAATATT
1 AAAATT-ATAAAAAATAATAAAAATATT-T-AAA-TTATAAAAATAAA-ATT
86873622 AAAATTGATAAAA
1 AAAATT-ATAAAA
86873635 CTTATAAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
46 2 0.04
47 6 0.12
48 11 0.21
49 33 0.63
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.33
Consensus pattern (47 bp):
AAAATTATAAAAAATAATAAAAATATTTAAATTATAAAAATAAAATT
Found at i:86874200 original size:17 final size:18
Alignment explanation
Indices: 86874175--86874222 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
86874165 GTTTATATTA
*
86874175 ATTTCATATTTTTTA-AT
1 ATTTAATATTTTTTATAT
86874192 ATTTAATA-TTTTTATAT
1 ATTTAATATTTTTTATAT
*
86874209 TTTTAATATTTTTT
1 ATTTAATATTTTTT
86874223 TCTAATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
16 6 0.22
17 16 0.59
18 5 0.19
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (18 bp):
ATTTAATATTTTTTATAT
Found at i:86874220 original size:9 final size:9
Alignment explanation
Indices: 86874184--86874221 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
86874174 AATTTCATAT
86874184 TTTTTAATA
1 TTTTTAATA
86874193 --TTTAATA
1 TTTTTAATA
86874200 TTTTT-ATA
1 TTTTTAATA
86874208 TTTTTAATA
1 TTTTTAATA
86874217 TTTTT
1 TTTTT
86874222 TTCTAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
7 7 0.27
8 8 0.31
9 11 0.42
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (9 bp):
TTTTTAATA
Found at i:86880003 original size:22 final size:22
Alignment explanation
Indices: 86879976--86880029 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
86879966 AGAAATCCTA
* **
86879976 AAAAAATATATTTTTTAATTTT
1 AAAAAATATAATTTGAAATTTT
86879998 AAAAAATA-AATTTGAAATTTT
1 AAAAAATATAATTTGAAATTTT
86880019 AAAAAATATAA
1 AAAAAATATAA
86880030 AAATATAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 18 0.64
22 10 0.36
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (22 bp):
AAAAAATATAATTTGAAATTTT
Found at i:86880161 original size:5 final size:5
Alignment explanation
Indices: 86880153--86880185 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
86880143 TAATTGATTG
86880153 AAATT AAATT AAATT AAATT AAATT AAATT AAA
1 AAATT AAATT AAATT AAATT AAATT AAATT AAA
86880186 AAACTTGTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (5 bp):
AAATT
Found at i:86882847 original size:113 final size:113
Alignment explanation
Indices: 86882649--86882877 Score: 440
Period size: 113 Copynumber: 2.0 Consensus size: 113
86882639 GCCTGCCGTT
86882649 TTGGACCATCCAAGGCTGATTTCTTTATTGTATTAAGTGTTTACAGTCACTCTTGATATGTTATG
1 TTGGACCATCCAAGGCTGATTTCTTTATTGTATTAAGTGTTTACAGTCACTCTTGATATGTTATG
86882714 GTTGAGTTGTGATAAAGCCAATTGTCAACGTGTCATAATGTACTTTTG
66 GTTGAGTTGTGATAAAGCCAATTGTCAACGTGTCATAATGTACTTTTG
*
86882762 TTGGACCATCCAAGGCTGATTTCTTTATTGTATTAAGTGTTTACAGTCACTCTTGATATGTTGTG
1 TTGGACCATCCAAGGCTGATTTCTTTATTGTATTAAGTGTTTACAGTCACTCTTGATATGTTATG
*
86882827 GTTGAGTTGTGATAAAGCCAATTGTCAACGTGTCATAATGTGCTTTTG
66 GTTGAGTTGTGATAAAGCCAATTGTCAACGTGTCATAATGTACTTTTG
86882875 TTG
1 TTG
86882878 TGTTGATGGA
Statistics
Matches: 114, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
113 114 1.00
ACGTcount: A:0.24, C:0.14, G:0.21, T:0.41
Consensus pattern (113 bp):
TTGGACCATCCAAGGCTGATTTCTTTATTGTATTAAGTGTTTACAGTCACTCTTGATATGTTATG
GTTGAGTTGTGATAAAGCCAATTGTCAACGTGTCATAATGTACTTTTG
Found at i:86883398 original size:19 final size:19
Alignment explanation
Indices: 86883374--86883423 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
86883364 TTTAATGAGA
* **
86883374 TATTTTTTTATTTTTTTAT
1 TATTTTATTATTTCATTAT
86883393 TATTTTATTATTTCATTAT
1 TATTTTATTATTTCATTAT
86883412 TATTTTATTATT
1 TATTTTATTATT
86883424 AATTATTTAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (19 bp):
TATTTTATTATTTCATTAT
Found at i:86883421 original size:8 final size:8
Alignment explanation
Indices: 86883374--86883423 Score: 55
Period size: 8 Copynumber: 5.9 Consensus size: 8
86883364 TTTAATGAGA
*
86883374 TATTTTTT
1 TATTATTT
*
86883382 TATTTTTT
1 TATTATTT
86883390 TATTATTT
1 TATTATTT
86883398 TATTATTTCAT
1 TATTA-TT--T
86883409 TATTATTT
1 TATTATTT
86883417 TATTATT
1 TATTATT
86883424 AATTATTTAG
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
8 28 0.74
9 2 0.05
10 2 0.05
11 6 0.16
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTATTT
Found at i:86885615 original size:46 final size:46
Alignment explanation
Indices: 86885562--86885788 Score: 339
Period size: 46 Copynumber: 4.9 Consensus size: 46
86885552 GTGTGCTCTT
*
86885562 TGATATGAAATTCGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGCGTAAGACCATGGTTGAAAGATACCATGGCAACC
86885608 TGATATGAAATGCGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGCGTAAGACCATGGTTGAAAGATACCATGGCAACC
*
86885654 TGATATGAAATGCGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGCGTAAGACCATGGTTGAAAGATACCATGGCAACC
*** *
86885700 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGCGTAAGACCATGGTTGAAAGATACCATGGCAACC
* * * * *
86885746 TGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGATATG-AAATGCGTAAGACCATGGTTGAAAGATACCATGGCA
86885789 TCATGTCAAA
Statistics
Matches: 168, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 1 0.01
46 167 0.99
ACGTcount: A:0.40, C:0.16, G:0.23, T:0.21
Consensus pattern (46 bp):
TGATATGAAATGCGTAAGACCATGGTTGAAAGATACCATGGCAACC
Found at i:86887032 original size:134 final size:133
Alignment explanation
Indices: 86886785--86887045 Score: 306
Period size: 134 Copynumber: 2.0 Consensus size: 133
86886775 TTACAATCAT
* * * *
86886785 TAAAAATTTCTTAGTCTAAATTCACAATATTTTAGTTGGTCCAACAATATCATAGTGTTTGTAGG
1 TAAAAATTTCTTAATCTAAATTCACAATATTTTAGTTGGTCCAACAATATCATAATATATGTAGG
* * * *
86886850 TAAAAGCAAACGACCTAGTATAACATTCCAACAATCATTTAATGTCAAATTTATGTTGATAATAT
66 TAAAAGCAAACAACCTAATATAACATTCCAACAATCATTTAATCTCAAATTAATGTTGATAATAT
86886915 GTA
131 GTA
* *** * * *
86886918 TAAAAATTTTCTTAATCTAAATTTATTGTATTTTAGTTGGTCCATCAGTATCATAATATATGTTG
1 TAAAAA-TTTCTTAATCTAAATTCACAATATTTTAGTTGGTCCAACAATATCATAATATATGTAG
* * * * * * * *
86886983 GTAATAGCAAACAACTTAATATAACTTTTCACCGATCATTTAGTCTCAAATTAATGTTTATAA
65 GTAAAAGCAAACAACCTAATATAACATTCCAACAATCATTTAATCTCAAATTAATGTTGATAA
86887046 AATATCTTCA
Statistics
Matches: 104, Mismatches: 23, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
133 6 0.06
134 98 0.94
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (133 bp):
TAAAAATTTCTTAATCTAAATTCACAATATTTTAGTTGGTCCAACAATATCATAATATATGTAGG
TAAAAGCAAACAACCTAATATAACATTCCAACAATCATTTAATCTCAAATTAATGTTGATAATAT
GTA
Found at i:86900560 original size:3 final size:3
Alignment explanation
Indices: 86900554--86900580 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
86900544 TTATGTTTTC
86900554 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
86900581 ATAATATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:86901891 original size:7 final size:7
Alignment explanation
Indices: 86901879--86901919 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
86901869 GTTAGAGTTT
*
86901879 ATATATA
1 ATATAAA
*
86901886 ATATATA
1 ATATAAA
86901893 ATATAAA
1 ATATAAA
86901900 ATATAAA
1 ATATAAA
86901907 ATATAAA
1 ATATAAA
86901914 A-ATAAA
1 ATATAAA
86901920 TAAATAAACT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
6 5 0.15
7 28 0.85
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (7 bp):
ATATAAA
Found at i:86901902 original size:14 final size:14
Alignment explanation
Indices: 86901879--86901927 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
86901869 GTTAGAGTTT
*
86901879 ATATATAATATATA
1 ATATAAAATATATA
*
86901893 ATATAAAATATAAA
1 ATATAAAATATATA
*
86901907 ATATAAAAATAAATA
1 ATAT-AAAATATATA
86901922 A-ATAAA
1 ATATAAA
86901928 CTTCAAGAGG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
13 3 0.10
14 18 0.60
15 9 0.30
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
ATATAAAATATATA
Found at i:86903537 original size:131 final size:133
Alignment explanation
Indices: 86903335--86903632 Score: 325
Period size: 134 Copynumber: 2.2 Consensus size: 133
86903325 ATGGGGGTTG
* * ** *
86903335 CAACCCAGCACGATAGGGCACTATTCCTCGAATTGCCAAACATCGAACATTTCTTCCGTTTTAAA
1 CAACCCAGCACGATAGGGCACGATT-CTCGAATTACCAAACATCGAACATGCCTTCCGTTTGAAA
* ** ** * * * * *
86903400 GAG-TTT-TTAAAAAACGTGAGTGGGATTCTGAAGGGATCTTCGATCGTTTTGAACAAATGAA-A
65 GAGTTTTCTTAAAAAACATGAGTGAAAACCTAAAGGAATATTCGATCATTTTGAACAAA-CAAGA
86903462 AAGCA
129 AAGCA
* *
86903467 CAACCCAGCACGATAGGGCACGATTCTCGAATTACCAAACATCGAACATCGCCTT-TGTTTGGAA
1 CAACCCAGCACGATAGGGCACGATTCTCGAATTACCAAACATCGAACAT-GCCTTCCGTTTGAAA
* *
86903531 GGGTTTTTCTTAAAAAACATGAGTGAAAACCTAAAGGAATATTCGATTATTTTGAACAAACAAGA
65 GAG-TTTTCTTAAAAAACATGAGTGAAAACCTAAAGGAATATTCGATCATTTTGAACAAACAAGA
*
86903596 AATCA
129 AAGCA
* * *
86903601 CAACCCAACACGATAGGGCATGATTCCCGAAT
1 CAACCCAGCACGATAGGGCACGATTCTCGAAT
86903633 GGTCAAACAC
Statistics
Matches: 138, Mismatches: 23, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
131 31 0.22
132 27 0.20
133 5 0.04
134 75 0.54
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (133 bp):
CAACCCAGCACGATAGGGCACGATTCTCGAATTACCAAACATCGAACATGCCTTCCGTTTGAAAG
AGTTTTCTTAAAAAACATGAGTGAAAACCTAAAGGAATATTCGATCATTTTGAACAAACAAGAAA
GCA
Found at i:86903834 original size:132 final size:131
Alignment explanation
Indices: 86903564--86903939 Score: 416
Period size: 132 Copynumber: 2.9 Consensus size: 131
86903554 TGAAAACCTA
* * * * *
86903564 AAGGAATATTCGATTATTTTGAACAAACAAGAAATCACAACCCAACACGA-TAGGGCATGATTCC
1 AAGGGATATTCGATTATTTTCAGCAAACAAGAAATTACAACCCAACAC-ATTAGGGCACGATTCC
* * * * * * * * *
86903628 -CGAATGGTCAAACACCGAGTATTGCCTTCGTTTTAAAGGACTTTTAGAAGACCTGAGTGAAATT
65 GCGAATTGCCAAATATCAAAT-TTGCCTTCGTTTTAAAGAATTTTTAAAAGACCTGAGTGAAATT
86903692 TCG
129 TCG
* * * *
86903695 AAGGGATATTTGATTATTTTCAGCGAACAAGAAATTACAACCCAACACGTTAGTGCACGATTCCG
1 AAGGGATATTCGATTATTTTCAGCAAACAAGAAATTACAACCCAACACATTAGGGCACGATTCCG
* * * *
86903760 TGAATTGCTAAATATCAAACTTTGCCTTCGTTTTAAAGAATTTTTAAAAGGCGTGAGTGAAATTT
66 CGAATTGCCAAATATCAAA-TTTGCCTTCGTTTTAAAGAATTTTTAAAAGACCTGAGTGAAATTT
*
86903825 TG
130 CG
* * * * *
86903827 AAGGGATATTCGATTATTTTGAGCAAACACGAAATTGCAACCCAGCACATTAGGGCACTATTCCG
1 AAGGGATATTCGATTATTTTCAGCAAACAAGAAATTACAACCCAACACATTAGGGCACGATTCCG
* *
86903892 CGAATTGCCAAATATCAAATCT-CATCTTCGTCTTAAAGAATTTTTAAA
66 CGAATTGCCAAATATCAAATTTGC--CTTCGTTTTAAAGAATTTTTAAA
86903940 TGGATACTTA
Statistics
Matches: 204, Mismatches: 36, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
130 1 0.00
131 56 0.27
132 146 0.72
133 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (131 bp):
AAGGGATATTCGATTATTTTCAGCAAACAAGAAATTACAACCCAACACATTAGGGCACGATTCCG
CGAATTGCCAAATATCAAATTTGCCTTCGTTTTAAAGAATTTTTAAAAGACCTGAGTGAAATTTC
G
Found at i:86906946 original size:132 final size:132
Alignment explanation
Indices: 86906744--86907320 Score: 852
Period size: 132 Copynumber: 4.4 Consensus size: 132
86906734 AGGATTATGA
* * **
86906744 CTTCGATCTGCTTCACTGCAACTTCAAGGAGACAAGATCTGCAATCTTCAGCCTACTCCACTACA
1 CTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAAT-TTCAGCCTACTCCACTACA
* * *
86906809 TCTTTAGGGAGTTAGGTTGGTGG-TGTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCG
65 ACTTTAGGGAGCTAGGTTGGTGGCT-TAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCA
86906873 CCGT
129 CCGT
* **
86906877 CTTCGATATGC-TCTACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAGCCTACTTTACTACA
1 CTTCGATCTGCTTC-ACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAGCCTACTCCACTACA
* *
86906941 ACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTTCTTCACTGCAACTTCAGGAAGCCAAGATTCAT
65 ACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCAC
86907006 CGT
130 CGT
* * *
86907009 TTTCGATCTGCTTCATTGCAACTTCAGGGAAACAAGATCTAAAACTTCAGCCTACTCCACTACAA
1 CTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAGCCTACTCCACTACAA
* * * *
86907074 CTTTAAGGAGCTATGTTAGTGGCTTAAATCTGCTTCACTGCAATTTCAGGAAGCCAAGATTCACC
66 CTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCACC
86907139 GT
131 GT
* * * *
86907141 CTTCAATCTGCTTCACTGCAACTTCAGGGAAGCAGGATCTAAAATTTCAGCCTCCTCCACTACAA
1 CTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAGCCTACTCCACTACAA
* *
86907206 CTTTAGGGAGCTAGGTTGGTGGCTTAAATCTACTTCACTGCAATTTCAGGAAGCCAAGATTCACC
66 CTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCACC
86907271 GT
131 GT
* * * *
86907273 CTTCGGTCTGCTTCAGTGCAACTTCAGGGAAACAGGATCTGAAATTTC
1 CTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAATTTC
86907321 GCCAATGTCA
Statistics
Matches: 401, Mismatches: 40, Indels: 7
0.90 0.09 0.02
Matches are distributed among these distances:
132 361 0.90
133 40 0.10
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.29
Consensus pattern (132 bp):
CTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAGCCTACTCCACTACAA
CTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCACC
GT
Found at i:86907167 original size:45 final size:45
Alignment explanation
Indices: 86906836--86907300 Score: 145
Period size: 45 Copynumber: 10.5 Consensus size: 45
86906826 TGGTGGTGTA
*
86906836 AATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTC
1 AATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCACCGTCTTC
* * * ***
86906881 GATATGC-TCTACTGCAACTTCAGGGAA-ACAAGA-TCTAAAAT-TTC
1 AATCTGCTTC-ACTGCAACTTCA-GGAAGCCAAGATTC-ACCGTCTTC
** * * * * * * * *** * *
86906925 AGCCTACTTTACTACAACTTTAGGGAG-CTAGGTT-GGTGGCTTA
1 AATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCACCGTCTTC
* * *
86906968 AATCTTCTTCACTGCAACTTCAGGAAGCCAAGATTCATCGTTTTC
1 AATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCACCGTCTTC
* * * ***
86907013 GATCTGCTTCATTGCAACTTCAGGGAA-ACAAGA-TCTA-AAACTTC
1 AATCTGCTTCACTGCAACTTCA-GGAAGCCAAGATTC-ACCGTCTTC
** * * * * * * ** * *
86907057 AGCCTACTCCACTACAACTTTAAGG-AGCTATG-TT-AGTGGCTTA
1 AATCTGCTTCACTGCAAC-TTCAGGAAGCCAAGATTCACCGTCTTC
*
86907100 AATCTGCTTCACTGCAATTTCAGGAAGCCAAGATTCACCGTCTTC
1 AATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCACCGTCTTC
* ***
86907145 AATCTGCTTCACTGCAACTTCAGGGAAG-CAGGA-TCTAAAAT-TTC
1 AATCTGCTTCACTGCAACTTCA-GGAAGCCAAGATTC-ACCGTCTTC
** * * * * * * * *** * *
86907189 AGCCTCCTCCACTACAACTTTAGGGAG-CTAGGTT-GGTGGCTTA
1 AATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCACCGTCTTC
* *
86907232 AATCTACTTCACTGCAATTTCAGGAAGCCAAGATTCACCGTCTTC
1 AATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCACCGTCTTC
** *
86907277 GGTCTGCTTCAGTGCAACTTCAGG
1 AATCTGCTTCACTGCAACTTCAGG
86907301 GAAACAGGAT
Statistics
Matches: 280, Mismatches: 116, Indels: 48
0.63 0.26 0.11
Matches are distributed among these distances:
42 6 0.02
43 76 0.27
44 75 0.27
45 110 0.39
46 13 0.05
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (45 bp):
AATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCACCGTCTTC
Found at i:86918548 original size:25 final size:27
Alignment explanation
Indices: 86918511--86918563 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
86918501 TCAAACATGC
86918511 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
86918537 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
86918563 A
1 A
86918564 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:86920075 original size:26 final size:26
Alignment explanation
Indices: 86920044--86920151 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
86920034 TGAAATTCCC
*
86920044 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
86920070 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
86920096 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
86920122 GTCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
86920148 ATCA
1 ATCA
86920152 ATTTGTATCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:86922405 original size:131 final size:132
Alignment explanation
Indices: 86922240--86922523 Score: 333
Period size: 132 Copynumber: 2.2 Consensus size: 132
86922230 CTAAAGGAAC
** * *
86922240 ATTCGATTATTTTGAAAAAACGAGAAATCACAACCCAACACGATAGGGCATGATT-CTCGAATGG
1 ATTCGATTATTTTGAGCAAACGAGAAATCACAACCCAACACGATAGGGCACGATTCCGCGAATGG
* ** * * * *
86922304 -TCGAACA-CCGAGTATTGCCTTCGTTTTAAAGGACTTTTAGAAGATC-TGAGTGAAATTTCGAA
66 CT-AAACATCAAACT-TTGCCTTCGTTTTAAAGAACTTTTAAAAG-GCGTGAGTGAAATTTCGAA
86922366 GGGAT
128 GGGAT
* * * * * *
86922371 ATTTGATTATTTTGAGCGAACGAGAAATTACAACCCAACACGTTAGTGCACGATTCCGCGAATTG
1 ATTCGATTATTTTGAGCAAACGAGAAATCACAACCCAACACGATAGGGCACGATTCCGCGAATGG
* * *
86922436 CTAAATATCAAACTTTGCCTTCGTTTTAAAGAATTTTTAAAAGGCGTGAGTGAAATTTTGAAGGG
66 CTAAACATCAAACTTTGCCTTCGTTTTAAAGAACTTTTAAAAGGCGTGAGTGAAATTTCGAAGGG
86922501 AT
131 AT
86922503 ATTCGATTATTTTGAGCAAAC
1 ATTCGATTATTTTGAGCAAAC
86922524 ACAAAATTGC
Statistics
Matches: 127, Mismatches: 22, Indels: 7
0.81 0.14 0.04
Matches are distributed among these distances:
131 48 0.38
132 75 0.59
133 4 0.03
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (132 bp):
ATTCGATTATTTTGAGCAAACGAGAAATCACAACCCAACACGATAGGGCACGATTCCGCGAATGG
CTAAACATCAAACTTTGCCTTCGTTTTAAAGAACTTTTAAAAGGCGTGAGTGAAATTTCGAAGGG
AT
Found at i:86922493 original size:132 final size:131
Alignment explanation
Indices: 86922318--86922608 Score: 363
Period size: 132 Copynumber: 2.2 Consensus size: 131
86922308 ACACCGAGTA
* * * * *
86922318 TTGCCTTCGTTTTAAAGGACTTTTAGAAGATCTGAGTGAAATTTCGAAGGGATATTTGATTATTT
1 TTGCCTTCGTTTTAAAGAATTTTTAAAAGAGCTGAGTGAAATTTCGAAGGGATATTCGATTATTT
* * * * *
86922383 TGAGCGAACGA-GAAATTACAACCCAACACGTTAGTGCACGATTCCGCGAATTGCTAAATATCAA
66 TGAGCAAAC-ACAAAATTACAACCCAACACATTAGGGCACGATTCCGCGAATTGCCAAATATCAA
86922447 ACT
130 A-T
*
86922450 TTGCCTTCGTTTTAAAGAATTTTTAAAAG-GCGTGAGTGAAATTTTGAAGGGATATTCGATTATT
1 TTGCCTTCGTTTTAAAGAATTTTTAAAAGAGC-TGAGTGAAATTTCGAAGGGATATTCGATTATT
* * * *
86922514 TTGAGCAAACACAAAATTGCAACCCAGCACATTAGGGCACTATTTCGCGAATTGCCAAATATCAA
65 TTGAGCAAACACAAAATTACAACCCAACACATTAGGGCACGATTCCGCGAATTGCCAAATATCAA
86922579 AT
130 AT
* *
86922581 CT-CATCTTCGTCTTAAAGAATTTTTAAA
1 TTGC--CTTCGTTTTAAAGAATTTTTAAA
86922609 TGGATACTTA
Statistics
Matches: 138, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
130 1 0.01
131 4 0.03
132 133 0.96
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.32
Consensus pattern (131 bp):
TTGCCTTCGTTTTAAAGAATTTTTAAAAGAGCTGAGTGAAATTTCGAAGGGATATTCGATTATTT
TGAGCAAACACAAAATTACAACCCAACACATTAGGGCACGATTCCGCGAATTGCCAAATATCAAA
T
Found at i:86929943 original size:16 final size:15
Alignment explanation
Indices: 86929922--86929951 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
86929912 TTTTAAAAAT
*
86929922 AAAAAATTAATTTTA
1 AAAAAAATAATTTTA
86929937 AAAAAAATAATTTTA
1 AAAAAAATAATTTTA
86929952 TCGATGAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
AAAAAAATAATTTTA
Found at i:86931798 original size:22 final size:21
Alignment explanation
Indices: 86931771--86931813 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
86931761 TATAAATTAA
86931771 AATATTTTAATAATAAAAATAT
1 AATATTTTAAT-ATAAAAATAT
*
86931793 AATATTTTAATATAATAATAT
1 AATATTTTAATATAAAAATAT
86931814 TTGACTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
AATATTTTAATATAAAAATAT
Found at i:86932497 original size:20 final size:20
Alignment explanation
Indices: 86932456--86932498 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
86932446 TAATATTTCA
86932456 AATATAAAAAACTAAAATAT
1 AATATAAAAAACTAAAATAT
86932476 AATATGAAATAAA-TAAAA-AT
1 AATAT-AAA-AAACTAAAATAT
86932496 AAT
1 AAT
86932499 TATTTTTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 10 0.48
21 8 0.38
22 3 0.14
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (20 bp):
AATATAAAAAACTAAAATAT
Found at i:86934242 original size:24 final size:26
Alignment explanation
Indices: 86934188--86934248 Score: 63
Period size: 24 Copynumber: 2.4 Consensus size: 26
86934178 AAAATATTTT
* * *
86934188 ATTTTTTTCTTTCATAAAGAAAGTTGT
1 ATTTTTTT-TATCATAAAAAAAGTTGA
86934215 ATTTTTTTTATCA-AAAAAAAGTT-A
1 ATTTTTTTTATCATAAAAAAAGTTGA
*
86934239 ATTTTATTTA
1 ATTTTTTTTA
86934249 AATATAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 9 0.30
25 9 0.30
26 4 0.13
27 8 0.27
ACGTcount: A:0.36, C:0.05, G:0.07, T:0.52
Consensus pattern (26 bp):
ATTTTTTTTATCATAAAAAAAGTTGA
Found at i:86937509 original size:18 final size:18
Alignment explanation
Indices: 86937466--86937522 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
86937456 TGTGGTTTTA
*
86937466 CCCGTGTGGTCCCATACG
1 CCCGTGTGGTCCCACACG
* *
86937484 CCCATGTGGTCTCACACG
1 CCCGTGTGGTCCCACACG
*
86937502 CTCGTGTGG-CCCACACAG
1 CCCGTGTGGTCCCACAC-G
86937520 CCC
1 CCC
86937523 AAATCGGTAT
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
17 6 0.19
18 25 0.81
ACGTcount: A:0.14, C:0.42, G:0.25, T:0.19
Consensus pattern (18 bp):
CCCGTGTGGTCCCACACG
Found at i:86948673 original size:22 final size:21
Alignment explanation
Indices: 86948648--86948696 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
86948638 TCAAATGATA
86948648 TTTTCATACATTTAAATTTTAG
1 TTTTCATA-ATTTAAATTTTAG
* **
86948670 TTTTCCTTAATTTTTATTTTAG
1 TTTT-CATAATTTAAATTTTAG
86948692 TTTTC
1 TTTTC
86948697 CTTATGTTCG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 1 0.04
22 19 0.83
23 3 0.13
ACGTcount: A:0.22, C:0.10, G:0.04, T:0.63
Consensus pattern (21 bp):
TTTTCATAATTTAAATTTTAG
Found at i:86952628 original size:78 final size:77
Alignment explanation
Indices: 86952493--86952789 Score: 300
Period size: 78 Copynumber: 3.9 Consensus size: 77
86952483 GAAATCGAAT
* * * * * * *
86952493 AAATCCTGTTAAACGAAAAGAATAAAAATCCTG-AACAGAATTGTTTAATT-AGTTTTCTGCTTA
1 AAATCCTGTTAAACGATAGGAAT-AAAATCCTGAAACAGGAGTGTTCAATTGAG-TTTCTGTTTG
86952556 AAATAAGAATCAAAC
64 AAA-AAGAATCAAAC
* *
86952571 AAATCCTGTTAAACGATAGGAATAAAGTCCTGAAACAGGAGTGTTCAATTGAGTTTCTATTTGAA
1 AAATCCTGTTAAACGATAGGAATAAAATCCTGAAACAGGAGTGTTCAATTGAGTTTCTGTTTGAA
*
86952636 AAA-AA-CAAAA
66 AAAGAATCAAAC
* * * * *
86952646 AAATCCGGTTAAATTG-CAGGAATAAAATCCTGAAATAGGAGTGCTCAATTGA-TATTCTGTTTG
1 AAATCCTGTTAAA-CGATAGGAATAAAATCCTGAAACAGGAGTGTTCAATTGAGT-TTCTGTTTG
*
86952709 AAACAGAAATCAAAC
64 AAAAAG-AATCAAAC
* * * * * *
86952724 AAGTCCTGTTAAATGGTAGGAATAAAATCCTGAAACAGGATTGTTCAATTGAATTTCTATTTGAA
1 AAATCCTGTTAAACGATAGGAATAAAATCCTGAAACAGGAGTGTTCAATTGAGTTTCTGTTTGAA
86952789 A
66 A
86952790 CGGAATATAA
Statistics
Matches: 184, Mismatches: 26, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
74 1 0.01
75 60 0.33
76 3 0.02
77 14 0.08
78 103 0.56
79 3 0.02
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.29
Consensus pattern (77 bp):
AAATCCTGTTAAACGATAGGAATAAAATCCTGAAACAGGAGTGTTCAATTGAGTTTCTGTTTGAA
AAAGAATCAAAC
Found at i:86956566 original size:62 final size:62
Alignment explanation
Indices: 86956490--86956750 Score: 353
Period size: 62 Copynumber: 4.2 Consensus size: 62
86956480 TGAACGGCCG
* * *
86956490 TGTAACTCACTGTTCATTGTATAAAACCACACGGCTAGGGATACGGGCGTGTGCCCAGGTCA
1 TGTAACTCACTGTTCATAGTATAAAACCACACGGCCAGGGACACGGGCGTGTGCCCAGGTCA
* * * * * *
86956552 TGTAGCTCACTGTTCATAGTATAAAACCACATGGCTAGAGACACAGGCGTGTGCCCAGGTCG
1 TGTAACTCACTGTTCATAGTATAAAACCACACGGCCAGGGACACGGGCGTGTGCCCAGGTCA
* * * *
86956614 TGTAACTCATTGTT-ATAGTATAAAACCACACGGCCAAGGACACGGGCATGTGCCTAGGTCA
1 TGTAACTCACTGTTCATAGTATAAAACCACACGGCCAGGGACACGGGCGTGTGCCCAGGTCA
* * *
86956675 TGTAACTCACTGTTCATAGTATAAAACCACACAGCCAGGGACACGGGTGTGTGCCCAGGTTA
1 TGTAACTCACTGTTCATAGTATAAAACCACACGGCCAGGGACACGGGCGTGTGCCCAGGTCA
* *
86956737 GGTGACTCACTGTT
1 TGTAACTCACTGTT
86956751 TGTACTTAAA
Statistics
Matches: 172, Mismatches: 26, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
61 52 0.30
62 120 0.70
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.24
Consensus pattern (62 bp):
TGTAACTCACTGTTCATAGTATAAAACCACACGGCCAGGGACACGGGCGTGTGCCCAGGTCA
Found at i:86956641 original size:123 final size:124
Alignment explanation
Indices: 86956488--86956734 Score: 361
Period size: 123 Copynumber: 2.0 Consensus size: 124
86956478 TGTGAACGGC
* * * * *
86956488 CGTGTAACTCACTGTTCATTGTATAAAACCACACGGCTAGGGATACGGGCGTGTGCCCAGGTCAT
1 CGTGTAACTCACTGTTCATAGTATAAAACCACACGGCCAAGGACACGGGCATGTGCCCAGGTCAT
* ** *
86956553 GTAGCTCACTGTTCATAGTATAAAACCACATGGCTAGAGACACAGGCGTGTGCCCAGGT
66 GTAACTCACTGTTCATAGTATAAAACCACACAGCCAGAGACACAGGCGTGTGCCCAGGT
* *
86956612 CGTGTAACTCATTGTT-ATAGTATAAAACCACACGGCCAAGGACACGGGCATGTGCCTAGGTCAT
1 CGTGTAACTCACTGTTCATAGTATAAAACCACACGGCCAAGGACACGGGCATGTGCCCAGGTCAT
* * *
86956676 GTAACTCACTGTTCATAGTATAAAACCACACAGCCAGGGACACGGGTGTGTGCCCAGGT
66 GTAACTCACTGTTCATAGTATAAAACCACACAGCCAGAGACACAGGCGTGTGCCCAGGT
86956735 TAGGTGACTC
Statistics
Matches: 109, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
123 94 0.86
124 15 0.14
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.23
Consensus pattern (124 bp):
CGTGTAACTCACTGTTCATAGTATAAAACCACACGGCCAAGGACACGGGCATGTGCCCAGGTCAT
GTAACTCACTGTTCATAGTATAAAACCACACAGCCAGAGACACAGGCGTGTGCCCAGGT
Found at i:86959936 original size:5 final size:5
Alignment explanation
Indices: 86959927--86959997 Score: 133
Period size: 5 Copynumber: 14.2 Consensus size: 5
86959917 GATACATTAC
*
86959927 ATGAT GTGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
86959977 ATGAT ATGAT ATGAT ATGAT A
1 ATGAT ATGAT ATGAT ATGAT A
86959998 CTGTGCCTAT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 64 1.00
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (5 bp):
ATGAT
Found at i:86961539 original size:8 final size:7
Alignment explanation
Indices: 86961512--86961537 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
86961502 TATTTTGGTT
86961512 TTTTTAA
1 TTTTTAA
86961519 TTTTTAA
1 TTTTTAA
86961526 TTTTTAA
1 TTTTTAA
86961533 TTTTT
1 TTTTT
86961538 TATTACACCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (7 bp):
TTTTTAA
Found at i:86963522 original size:92 final size:92
Alignment explanation
Indices: 86963381--86963597 Score: 260
Period size: 93 Copynumber: 2.4 Consensus size: 92
86963371 CCCTCAATTT
* * * * * *
86963381 TTTTC-AAAATAAGCAATTAAGTCCCTAAC-TTTTTTTTGCACTCATTTGGGTGCTTGAATTTTC
1 TTTTCAAAAAAAAACAATTAAGCCCCT-ACTTTTTTTTTGCACTCAATTGGGTACTTGAACTTTC
* **
86963444 -AAAATGCATTAAAAAGGTCCTCAAACC
65 AAAAATGCATCAAAAAGACCCTCAAACC
*
86963471 TTTTCAAAAAAAAATCAATTAAGCCCCTACTTTTTTTTTGCACTTAATTGGGTACTTGAACTTTC
1 TTTTCAAAAAAAAA-CAATTAAGCCCCTACTTTTTTTTTGCACTCAATTGGGTACTTGAACTTTC
* *
86963536 AAAAATGTATCAAAAAGACCCTCAAACT
65 AAAAATGCATCAAAAAGACCCTCAAACC
* *
86963564 TTTTCAAAAAAAAAAAATTTAAGCCCCTGCTTTT
1 TTTTCAAAAAAAAACAA-TTAAGCCCCTACTTTT
86963598 GTTAAAAAAT
Statistics
Matches: 108, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
90 5 0.05
91 8 0.07
92 44 0.41
93 51 0.47
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.35
Consensus pattern (92 bp):
TTTTCAAAAAAAAACAATTAAGCCCCTACTTTTTTTTTGCACTCAATTGGGTACTTGAACTTTCA
AAAATGCATCAAAAAGACCCTCAAACC
Found at i:86963691 original size:37 final size:37
Alignment explanation
Indices: 86963650--86963795 Score: 107
Period size: 39 Copynumber: 3.8 Consensus size: 37
86963640 AGCTATAAAT
* **
86963650 ATTATT-AAATTTTAATAAAAAATTCAAATATTAAAAA
1 ATTATTAAAATTATAA-AAAAAATAAAAATATTAAAAA
*
86963687 ATTATTAAAAATTATAAAAAAAATAAAAATCTTAAAAA
1 ATTATT-AAAATTATAAAAAAAATAAAAATATTAAAAA
* * ** *
86963725 ATATATAAAAAAGTATAAAAATTTATAAAAATAGTAAAAA
1 AT-TAT-TAAAATTATAAAAA-AAATAAAAATATTAAAAA
* *
86963765 ATT-TATAAAATATATAGAAATATATAAAAAT
1 ATTAT-TAAAAT-TATA-AAAAAAATAAAAAT
86963796 TATAAAATTT
Statistics
Matches: 88, Mismatches: 14, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
37 6 0.07
38 26 0.30
39 37 0.42
40 19 0.22
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.32
Consensus pattern (37 bp):
ATTATTAAAATTATAAAAAAAATAAAAATATTAAAAA
Found at i:86963713 original size:29 final size:27
Alignment explanation
Indices: 86963681--86963807 Score: 85
Period size: 28 Copynumber: 4.4 Consensus size: 27
86963671 ATTCAAATAT
86963681 TAAAAAATTATTAAAAATTATAAAAAAAA
1 TAAAAAATT-TTAAAAA-TATAAAAAAAA
* *
86963710 T-AAAAATCTTAAAAAATATATAAAAAAG
1 TAAAAAAT-TTTAAAAATATA-AAAAAAA
**
86963738 TATAAAAATTTATAAAAATAGTAAAAAATT
1 TA-AAAAATTT-TAAAAATA-TAAAAAAAA
* * * * *
86963768 TATAAAATATATAGAAATATATAAAAAT
1 TAAAAAAT-TTTAAAAATATAAAAAAAA
*
86963796 TATAAAATTTTA
1 TAAAAAATTTTA
86963808 TAAAGTTGTA
Statistics
Matches: 80, Mismatches: 11, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
27 7 0.09
28 34 0.43
29 16 0.20
30 21 0.26
31 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.31
Consensus pattern (27 bp):
TAAAAAATTTTAAAAATATAAAAAAAA
Found at i:86963714 original size:27 final size:27
Alignment explanation
Indices: 86963683--86963794 Score: 91
Period size: 30 Copynumber: 3.9 Consensus size: 27
86963673 TCAAATATTA
*
86963683 AAAAATTATTAAAAATTATAAAAAAAAT
1 AAAAA-TATTAAAAAATATAAAAAAAAT
*
86963711 AAAAATCTTAAAAAATATATAAAAAAGTAT
1 AAAAATATTAAAAAATATA-AAAAAA--AT
**
86963741 AAAAAT-TTATAAAAATAGTAAAAAATTT
1 AAAAATATTA-AAAAATA-TAAAAAAAAT
*
86963769 ATAAAATATATAGAAATATATAAAAA
1 A-AAAATAT-TA-AAAAATATAAAAA
86963795 TTATAAAATT
Statistics
Matches: 70, Mismatches: 6, Indels: 14
0.78 0.07 0.16
Matches are distributed among these distances:
27 12 0.17
28 13 0.19
29 8 0.11
30 27 0.39
31 10 0.14
ACGTcount: A:0.68, C:0.01, G:0.03, T:0.29
Consensus pattern (27 bp):
AAAAATATTAAAAAATATAAAAAAAAT
Found at i:86963725 original size:39 final size:39
Alignment explanation
Indices: 86963656--86963774 Score: 123
Period size: 39 Copynumber: 3.0 Consensus size: 39
86963646 AAATATTATT
* ** *
86963656 AAATTTTAATAAAAAATTCAAATATTAAAAAAT-TATTAA
1 AAATTATAA-AAAAAATAAAAATATTAAAAAATATATAAA
*
86963695 AAATTATAAAAAAAATAAAAATCTTAAAAAATATATAAA
1 AAATTATAAAAAAAATAAAAATATTAAAAAATATATAAA
* ** * *
86963734 AAAGTATAAAAATTTATAAAAATAGTAAAAAATTTATAAA
1 AAATTATAAAAA-AAATAAAAATATTAAAAAATATATAAA
86963774 A
1 A
86963775 TATATAGAAA
Statistics
Matches: 67, Mismatches: 11, Indels: 3
0.83 0.14 0.04
Matches are distributed among these distances:
38 20 0.30
39 24 0.36
40 23 0.34
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (39 bp):
AAATTATAAAAAAAATAAAAATATTAAAAAATATATAAA
Found at i:86963741 original size:12 final size:11
Alignment explanation
Indices: 86963675--86963802 Score: 81
Period size: 10 Copynumber: 13.1 Consensus size: 11
86963665 TAAAAAATTC
86963675 AAATAT-TAAA
1 AAATATATAAA
*
86963685 AAAT-TATTAA
1 AAATATATAAA
86963695 AAAT-TATAAA
1 AAATATATAAA
86963705 AAA-A-AT-AA
1 AAATATATAAA
*
86963713 AAATCT-TAAA
1 AAATATATAAA
86963723 AAATATATAAA
1 AAATATATAAA
*
86963734 AAA-GTAT-AA
1 AAATATATAAA
*
86963743 AAATTTAT-AA
1 AAATATATAAA
*
86963753 AAATA-GTAAA
1 AAATATATAAA
*
86963763 AAAT-T-TATA
1 AAATATATAAA
*
86963772 AAATATAT-AG
1 AAATATATAAA
86963782 AAATATAT-AA
1 AAATATATAAA
86963792 AAAT-TATAAA
1 AAATATATAAA
86963802 A
1 A
86963803 TTTTATAAAG
Statistics
Matches: 94, Mismatches: 12, Indels: 24
0.72 0.09 0.18
Matches are distributed among these distances:
8 5 0.05
9 20 0.21
10 61 0.65
11 8 0.09
ACGTcount: A:0.67, C:0.01, G:0.02, T:0.30
Consensus pattern (11 bp):
AAATATATAAA
Found at i:86963743 original size:30 final size:29
Alignment explanation
Indices: 86963675--86963811 Score: 136
Period size: 29 Copynumber: 4.7 Consensus size: 29
86963665 TAAAAAATTC
*
86963675 AAATATTAAAAAATTATTAAAAAT-TATAAA
1 AAATA-TAAAAATTTA-TAAAAATATATAAA
*
86963705 AAAAATAAAAATCTTA-AAAAATATATAAA
1 AAATATAAAAAT-TTATAAAAATATATAAA
*
86963734 AAAGTATAAAAATTTATAAAAATA-GTAAA
1 AAA-TATAAAAATTTATAAAAATATATAAA
* * *
86963763 AAATTTATAAAATATATAGAAATATATAAA
1 AAATATA-AAAATTTATAAAAATATATAAA
* *
86963793 AATTATAAAATTTTATAAA
1 AAATATAAAAATTTATAAA
86963812 GTTGTAAGAA
Statistics
Matches: 88, Mismatches: 13, Indels: 13
0.77 0.11 0.11
Matches are distributed among these distances:
28 9 0.10
29 48 0.55
30 31 0.35
ACGTcount: A:0.66, C:0.01, G:0.02, T:0.31
Consensus pattern (29 bp):
AAATATAAAAATTTATAAAAATATATAAA
Found at i:86963753 original size:49 final size:47
Alignment explanation
Indices: 86963675--86963802 Score: 152
Period size: 49 Copynumber: 2.6 Consensus size: 47
86963665 TAAAAAATTC
86963675 AAATAT-TAAAAAATTATTAAAAATTATAAAAAAAAT-AAAAATCTTAAA
1 AAATATATAAAAAA-TA-TAAAAATTATAAAAAAAATAAAAAAT-TTAAA
* * *
86963723 AAATATATAAAAAAGTATAAAAATTTATAAAAATAGTAAAAAATTTATA
1 AAATATATAAAAAA-TATAAAAA-TTATAAAAAAAATAAAAAATTTAAA
*
86963772 AAATATATAGAAATATATAAAAATTATAAAA
1 AAATATATA-AAAAATATAAAAATTATAAAA
86963803 TTTTATAAAG
Statistics
Matches: 71, Mismatches: 5, Indels: 8
0.85 0.06 0.10
Matches are distributed among these distances:
48 20 0.28
49 41 0.58
50 10 0.14
ACGTcount: A:0.67, C:0.01, G:0.02, T:0.30
Consensus pattern (47 bp):
AAATATATAAAAAATATAAAAATTATAAAAAAAATAAAAAATTTAAA
Found at i:86963754 original size:19 final size:18
Alignment explanation
Indices: 86963675--86963811 Score: 96
Period size: 19 Copynumber: 7.1 Consensus size: 18
86963665 TAAAAAATTC
*
86963675 AAATATTAAAAAATTATTAA
1 AAATA-TAAAAATTTA-TAA
**
86963695 AAATTATAAAAA-AAATAA
1 AAA-TATAAAAATTTATAA
* *
86963713 AAATCTTAAAAAATATATAAA
1 AAAT-AT-AAAAATTTAT-AA
86963734 AAAGTATAAAAATTTATAA
1 AAA-TATAAAAATTTATAA
86963753 AAATAGTAAAAAATTTATAA
1 AAATA-T-AAAAATTTATAA
* *
86963773 AATATATAGAAATATATAA
1 AA-ATATAAAAATTTATAA
*
86963792 AAATTATAAAATTTTATAA
1 AAA-TATAAAAATTTATAA
86963811 A
1 A
86963812 GTTGTAAGAA
Statistics
Matches: 96, Mismatches: 11, Indels: 21
0.75 0.09 0.16
Matches are distributed among these distances:
17 1 0.01
18 10 0.10
19 37 0.39
20 36 0.38
21 11 0.11
22 1 0.01
ACGTcount: A:0.66, C:0.01, G:0.02, T:0.31
Consensus pattern (18 bp):
AAATATAAAAATTTATAA
Found at i:86963786 original size:59 final size:59
Alignment explanation
Indices: 86963719--86963847 Score: 165
Period size: 59 Copynumber: 2.2 Consensus size: 59
86963709 ATAAAAATCT
86963719 TAAA-AAATATATAAAAAAGTATAAAAATTTATAAAAATAGTAA-AAAATT-TATAAAATA
1 TAAAGAAATATAT-AAAAAGTATAAAAATTTAT-AAAATAGTAAGAAAATTATATAAAATA
* * * * * *
86963777 TATAGAAATATATAAAAATTATAAAATTTTATAAAGTTGTAAGAAAATTATATAAAATG
1 TAAAGAAATATATAAAAAGTATAAAAATTTATAAAATAGTAAGAAAATTATATAAAATA
86963836 TAAAGAAATATA
1 TAAAGAAATATA
86963848 AATTTCATAA
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
57 8 0.13
58 26 0.43
59 27 0.44
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (59 bp):
TAAAGAAATATATAAAAAGTATAAAAATTTATAAAATAGTAAGAAAATTATATAAAATA
Found at i:86963809 original size:29 final size:28
Alignment explanation
Indices: 86963643--86963811 Score: 114
Period size: 29 Copynumber: 5.9 Consensus size: 28
86963633 CAATAAAAGC
* * *
86963643 TATAAATATTATTAAATTTTAATAAAAAA
1 TATAAAAATTATAAAATTTT-ATAAAATA
* *
86963672 T-TCAAATATTAAAAAATTATTA-AAAAT-
1 TAT-AAAAATTATAAAATT-TTATAAAATA
** * *
86963699 TATAAAAAAAATAAAAATCTTAAAAAATA
1 TATAAAAATTAT-AAAATTTTATAAAATA
* *
86963728 TATAAAAAAGTATAAAAATTTATAAAA-A
1 TAT-AAAAATTATAAAATTTTATAAAATA
*
86963756 TAGTAAAAAATTTATAAAA-TATATAGAAATA
1 TA-T-AAAAA-TTATAAAATTTTATA-AAATA
86963787 TATAAAAATTATAAAATTTTATAAA
1 TATAAAAATTATAAAATTTTATAAA
86963812 GTTGTAAGAA
Statistics
Matches: 112, Mismatches: 16, Indels: 25
0.73 0.10 0.16
Matches are distributed among these distances:
27 9 0.08
28 29 0.26
29 51 0.46
30 20 0.18
31 3 0.03
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.34
Consensus pattern (28 bp):
TATAAAAATTATAAAATTTTATAAAATA
Found at i:86963841 original size:21 final size:21
Alignment explanation
Indices: 86963742--86963843 Score: 60
Period size: 19 Copynumber: 5.1 Consensus size: 21
86963732 AAAAAGTATA
*
86963742 AAAATT-TATAAAAATAGTAA-
1 AAAATTATATAAAGAT-GTAAG
*
86963762 AAAATT-TATAAA-ATATATAG
1 AAAATTATATAAAGATGTA-AG
* *
86963782 -AAA-TATATAAAAAT-T-AT
1 AAAATTATATAAAGATGTAAG
* *
86963799 AAAATTTTATAAAGTTGTAAG
1 AAAATTATATAAAGATGTAAG
86963820 AAAATTATATAAA-ATGTAAAG
1 AAAATTATATAAAGATGT-AAG
86963841 AAA
1 AAA
86963844 TATAAATTTC
Statistics
Matches: 65, Mismatches: 8, Indels: 17
0.72 0.09 0.19
Matches are distributed among these distances:
17 1 0.02
18 6 0.09
19 21 0.32
20 18 0.28
21 19 0.29
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (21 bp):
AAAATTATATAAAGATGTAAG
Found at i:86963847 original size:19 final size:19
Alignment explanation
Indices: 86963681--86963847 Score: 103
Period size: 20 Copynumber: 8.6 Consensus size: 19
86963671 ATTCAAATAT
86963681 TAAAAAAT-TATTAAAAAT-
1 TAAAAAATATA-TAAAAATG
* *
86963699 TATAAAAA-AAATAAAAATCT
1 TA-AAAAATATATAAAAAT-G
*
86963719 TAAAAAATATATAAAAAAG
1 TAAAAAATATATAAAAATG
*
86963738 TATAAAAATTTATAAAAATAG
1 TA-AAAAATATATAAAAAT-G
* *
86963759 TAAAAAATTTAT-AAAATA
1 TAAAAAATATATAAAAATG
*
86963777 TATAGAAATATATAAAAAT-
1 TA-AAAAATATATAAAAATG
* * **
86963796 TATAAAATTTTATAAAGTTG
1 TA-AAAAATATATAAAAATG
86963816 TAAGAAAAT-TATATAAAATG
1 TAA-AAAATATATA-AAAATG
86963836 TAAAGAAATATA
1 TAAA-AAATATA
86963848 AATTTCATAA
Statistics
Matches: 118, Mismatches: 17, Indels: 25
0.74 0.11 0.16
Matches are distributed among these distances:
18 11 0.09
19 46 0.39
20 56 0.47
21 5 0.04
ACGTcount: A:0.63, C:0.01, G:0.05, T:0.31
Consensus pattern (19 bp):
TAAAAAATATATAAAAATG
Found at i:86964055 original size:12 final size:13
Alignment explanation
Indices: 86964030--86964056 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
86964020 TCTTTATTAA
86964030 TTTTTACAATTTT
1 TTTTTACAATTTT
86964043 TTTTTACAATTTT
1 TTTTTACAATTTT
86964056 T
1 T
86964057 ATAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTTACAATTTT
Found at i:86964319 original size:89 final size:88
Alignment explanation
Indices: 86964168--86964392 Score: 278
Period size: 89 Copynumber: 2.5 Consensus size: 88
86964158 AATTTTTAAT
* * * * *
86964168 AAGAGCAGTGGCTTAATTGCTTTTTTGAAAAATTTTGAAGG-TCTTTTTATGTATTTTAAAAGTT
1 AAGAG-AGGGGCTTAATTACTTTTTTTAAAAAGTTTGAAGGCT-TTTTTATGCATTTTAAAAGTT
86964232 CAAGTACCCAATTGA-GTAAAAAAA
64 CAAGTACCCAATTGAGGTAAAAAAA
*
86964256 AAGAGTAGGGGCTTAATTACTTTTTTTAAAGAAGTTTGAAGGCTTTTTTATGCATTTTGAAAGTT
1 AAGAG-AGGGGCTTAATTACTTTTTTTAAA-AAGTTTGAAGGCTTTTTTATGCATTTTAAAAGTT
* *
86964321 CAAGTGCTCAATTGAGTGTAAAAAAA
64 CAAGTACCCAATTGAG-GTAAAAAAA
*
86964347 AA-AGAGGGGCTTAATTA-TTTTTTTAAAAAAAGTTTGAGGGCTTTTT
1 AAGAGAGGGGCTTAATTACTTTTTTT--AAAAAGTTTGAAGGCTTTTT
86964393 ACATAATTAA
Statistics
Matches: 121, Mismatches: 10, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
88 33 0.27
89 71 0.59
90 6 0.05
91 11 0.09
ACGTcount: A:0.35, C:0.08, G:0.20, T:0.38
Consensus pattern (88 bp):
AAGAGAGGGGCTTAATTACTTTTTTTAAAAAGTTTGAAGGCTTTTTTATGCATTTTAAAAGTTCA
AGTACCCAATTGAGGTAAAAAAA
Found at i:86964908 original size:9 final size:9
Alignment explanation
Indices: 86964909--86964981 Score: 121
Period size: 9 Copynumber: 8.2 Consensus size: 9
86964899 TCGGGTATTT
86964909 TTCG-GTAA
1 TTCGGGTAA
*
86964917 TTCGGTTAA
1 TTCGGGTAA
*
86964926 TTCGGTTAA
1 TTCGGGTAA
86964935 TTCGGGTAA
1 TTCGGGTAA
86964944 TTCGGGTAA
1 TTCGGGTAA
86964953 TTCGGGTAA
1 TTCGGGTAA
86964962 TTCGGGTAA
1 TTCGGGTAA
86964971 TTCGGGTAA
1 TTCGGGTAA
86964980 TT
1 TT
86964982 TTTAACCAAA
Statistics
Matches: 62, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
8 4 0.06
9 58 0.94
ACGTcount: A:0.22, C:0.11, G:0.29, T:0.38
Consensus pattern (9 bp):
TTCGGGTAA
Found at i:86970899 original size:14 final size:14
Alignment explanation
Indices: 86970880--86970906 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
86970870 GTTTGGCGGA
86970880 ATATTATAGGCAGG
1 ATATTATAGGCAGG
86970894 ATATTATAGGCAG
1 ATATTATAGGCAG
86970907 TTTGTCGAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.30
Consensus pattern (14 bp):
ATATTATAGGCAGG
Found at i:86971029 original size:16 final size:18
Alignment explanation
Indices: 86971008--86971042 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
86970998 GCTTCAAAAA
86971008 ACTCAAG-TC-TATTTTG
1 ACTCAAGCTCTTATTTTG
86971024 ACTCAAGCTCTTATTTTG
1 ACTCAAGCTCTTATTTTG
86971042 A
1 A
86971043 TACAACCTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 2 0.12
18 8 0.47
ACGTcount: A:0.26, C:0.20, G:0.11, T:0.43
Consensus pattern (18 bp):
ACTCAAGCTCTTATTTTG
Found at i:86974409 original size:16 final size:16
Alignment explanation
Indices: 86974388--86974421 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
86974378 TGGTAAAGAA
*
86974388 AAATATCGGATTAATG
1 AAATATCGGATAAATG
*
86974404 AAATATCTGATAAATG
1 AAATATCGGATAAATG
86974420 AA
1 AA
86974422 TCGGTAACTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.06, G:0.15, T:0.29
Consensus pattern (16 bp):
AAATATCGGATAAATG
Found at i:86975137 original size:28 final size:28
Alignment explanation
Indices: 86975084--86975167 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
86975074 CACTTTGTGC
86975084 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
86975113 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
86975141 GATACTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
86975168 CTGGTGTGTT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 33 0.65
29 18 0.35
ACGTcount: A:0.19, C:0.04, G:0.31, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:86975179 original size:23 final size:24
Alignment explanation
Indices: 86975088--86975181 Score: 91
Period size: 28 Copynumber: 3.6 Consensus size: 24
86975078 TTGTGCTATT
86975088 CTGGTGTGTTTTGGATGGATTATATTA
1 CTGGTGTGTTTTGGA-GGA-TATA-TA
*
86975115 TTCTGGTGTGTTTGGGAGGATTATATGATA
1 --CTGGTGTGTTTTGGAGG---ATAT-ATA
86975145 CTGGTGTGTTTTGGAGGAT-TATA
1 CTGGTGTGTTTTGGAGGATATATA
86975168 CTGGTGTGTTTTGG
1 CTGGTGTGTTTTGG
86975182 TTGGACATTT
Statistics
Matches: 59, Mismatches: 2, Indels: 14
0.79 0.03 0.19
Matches are distributed among these distances:
23 17 0.29
24 1 0.02
25 2 0.03
28 18 0.31
29 14 0.24
30 5 0.08
31 2 0.03
ACGTcount: A:0.16, C:0.04, G:0.34, T:0.46
Consensus pattern (24 bp):
CTGGTGTGTTTTGGAGGATATATA
Found at i:86975439 original size:20 final size:20
Alignment explanation
Indices: 86975393--86975453 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
86975383 ATGTGTCATA
86975393 TTTCAGGCACCTTGTGTGTCG
1 TTTCAGGCACC-TGTGTGTCG
**
86975414 -CACAGGCACCTGTGTGTCG
1 TTTCAGGCACCTGTGTGTCG
* *
86975433 TTTCAGGCACTTATGTGTCG
1 TTTCAGGCACCTGTGTGTCG
86975453 T
1 T
86975454 ATTCTGATCA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
19 9 0.27
20 24 0.73
ACGTcount: A:0.13, C:0.25, G:0.28, T:0.34
Consensus pattern (20 bp):
TTTCAGGCACCTGTGTGTCG
Found at i:86983029 original size:59 final size:60
Alignment explanation
Indices: 86982891--86983015 Score: 189
Period size: 59 Copynumber: 2.1 Consensus size: 60
86982881 ATGAAAGCGC
* *
86982891 ATGAAAGCTCCCTAAAAGTTGAGTGACAAAATTGCAATGATTTCATTTTGGGTAACCAAA
1 ATGAAAACTCCCTAAAAGTTGAGTGACAAAATTGCAAAGATTTCATTTTGGGTAACCAAA
** * *
86982951 ATGAAAACTCCCTAAAAGTTG-GTGAGGAAATTGCAAAGATTTCATTTTTGGTGACCAAA
1 ATGAAAACTCCCTAAAAGTTGAGTGACAAAATTGCAAAGATTTCATTTTGGGTAACCAAA
86983010 ATGAAA
1 ATGAAA
86983016 GTGTCTTAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
59 39 0.66
60 20 0.34
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (60 bp):
ATGAAAACTCCCTAAAAGTTGAGTGACAAAATTGCAAAGATTTCATTTTGGGTAACCAAA
Found at i:86986006 original size:43 final size:42
Alignment explanation
Indices: 86985953--86986290 Score: 141
Period size: 43 Copynumber: 7.7 Consensus size: 42
86985943 AAAATTTGAT
*
86985953 CTGCTTCACTCCTGCTCAGTGAAGATAAGATCTAGTATATAGC
1 CTGCTCCACTCCTGCTCAGTGAAGATAAGATCTAGTAT-TAGC
* * * **
86985996 CTGCTCCACTCCTGCTCAGTGAAGATAAG-GCTGGTGACTGGAAT
1 CTGCTCCACTCCTGCTCAGTGAAGATAAGATCTAGT-A-T-TAGC
* * * ** * *
86986040 CTGCTCCA-TCGCCGGT-ACGTGGAGATAAGATTCATCAAAATTCGAT
1 CTGCTCCACTC-CTGCTCA-GTGAAGATAAGA-TC-T-AGTATTAG-C
* * * *
86986086 CTGTTTCACTTCTGCTCAGTGAAGATAAGATCTGGTATTTAGC
1 CTGCTCCACTCCTGCTCAGTGAAGATAAGATCTAGTA-TTAGC
* * *
86986129 CTGCTCCACTCCTGCTCAGTGAAGATAAG-GCT-GATGATTGGAA
1 CTGCTCCACTCCTGCTCAGTGAAGATAAGATCTAG-T-ATTAG-C
* * * * ** * *
86986172 TTGCTCCA-TCGCCGGT-ACGTGGAGATAAGATTCATCAAAATTTGAT
1 CTGCTCCACTC-CTGCTCA-GTGAAGATAAGA-TC-T-AGTATTAG-C
* * *
86986218 CTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTTTATAGC
1 CTGCTCCACTCCTGCTCAGTGAAGATAAGATCTAGTAT-TAGC
* *
86986261 CTGCTTCACTCCTACTCAGTGAAGATAAGA
1 CTGCTCCACTCCTGCTCAGTGAAGATAAGA
86986291 CTGATGATTG
Statistics
Matches: 215, Mismatches: 55, Indels: 50
0.67 0.17 0.16
Matches are distributed among these distances:
41 1 0.00
42 13 0.06
43 110 0.51
44 30 0.14
45 5 0.02
46 49 0.23
47 7 0.03
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (42 bp):
CTGCTCCACTCCTGCTCAGTGAAGATAAGATCTAGTATTAGC
Found at i:86986240 original size:132 final size:133
Alignment explanation
Indices: 86985811--86986433 Score: 874
Period size: 133 Copynumber: 4.7 Consensus size: 133
86985801 GATCTGCTGT
* * *
86985811 AATTTGATCTGCTTTACTCCTGCTCAGTAAAGATAAGATCT-GTATGTTTAGCCTACTTCACTCC
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTA--TTTAGCCTGCTTCACTCC
* * ** * * * * ** *
86985875 TGCTCAATGAAGATAAGGCTGGTGGCTGAAATCTACTCCATTGCCGATATATAGAGATAAGACTC
64 TGCTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTAGAGATAAGATTC
*
86985940 GCCAA
129 ACCAA
* * *
86985945 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTAGTATATAGCCTGCTCCACTCCTG
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATTTAGCCTGCTTCACTCCTG
* * * *
86986010 CTCAGTGAAGATAAGGCTGGTGACTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCAT
66 CTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTAGAGATAAGATTCAC
86986075 CAA
131 CAA
* * * *
86986078 AATTCGATCTGTTTCACTTCTGCTCAGTGAAGATAAGATCTGGTATTTAGCCTGCTCCACTCCTG
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATTTAGCCTGCTTCACTCCTG
* *
86986143 CTCAGTGAAGATAAGGCTGATGATTGGAAT-TGCTCCATCGCCGGTACGTGGAGATAAGATTCAT
66 CTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTAGAGATAAGATTCAC
86986207 CAA
131 CAA
86986210 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGT-TTATAGCCTGCTTCACTCCT
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATT-TAGCCTGCTTCACTCCT
* *
86986274 ACTCAGTGAAGATAAGACTGATGATTGGAATCTGCTCCATCGCCGGTACGTAGAGATAAGATTCA
65 GCTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTAGAGATAAGATTCA
86986339 CCAA
130 CCAA
* * * *
86986343 AATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTGTTATATTTAACCTGCTTCACTCC
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTG--GTATTTAGCCTGCTTCACTCC
86986408 TGCTCAGTGAAGATAAGGCTGATGAT
64 TGCTCAGTGAAGATAAGGCTGATGAT
86986434 ATCTGTAATC
Statistics
Matches: 445, Mismatches: 38, Indels: 11
0.90 0.08 0.02
Matches are distributed among these distances:
131 2 0.00
132 123 0.28
133 236 0.53
134 39 0.09
135 43 0.10
136 2 0.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (133 bp):
AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATTTAGCCTGCTTCACTCCTG
CTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTAGAGATAAGATTCAC
CAA
Found at i:86986332 original size:265 final size:266
Alignment explanation
Indices: 86985811--86986433 Score: 883
Period size: 265 Copynumber: 2.3 Consensus size: 266
86985801 GATCTGCTGT
* *
86985811 AATTTGATCTGCTTT-ACTCCTGCTCAGTAAAGATAAGATCT-GTATGTTTAGCCTACTTCACTC
1 AATTTGATCTG-TTTCACTCCTGCTCAGTGAAGATAAGATCTGGTA--TTTAGCCTGCTTCACTC
* * ** * *
86985874 CTGCTCAATGAAGATAAGGCTGGTGGCTGAAATCTACTCCATTGCCGATATATAGAGATAAGACT
63 CTGCTCAGTGAAGATAAGGCTGATGATTGAAATCTACTCCATCGCCGATACATAGAGATAAGACT
*
86985939 CGCCAAAATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTAGTATATAGCCTGCTCCA
128 CACCAAAATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTAGTATATAGCCTGCTCCA
* * * *
86986004 CTCCTGCTCAGTGAAGATAAGGCTGGTGACTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAG
193 CTCCTACTCAGTGAAGATAAGACTGATGACTGGAATCTGCTCCATCGCCGGTACGTAGAGATAAG
*
86986069 ATTCATCAA
258 ATTCACCAA
* * *
86986078 AATTCGATCTGTTTCACTTCTGCTCAGTGAAGATAAGATCTGGTATTTAGCCTGCTCCACTCCTG
1 AATTTGATCTGTTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATTTAGCCTGCTTCACTCCTG
* * * * * * *
86986143 CTCAGTGAAGATAAGGCTGATGATTGGAAT-TGCTCCATCGCCGGTACGTGGAGATAAGATTCAT
66 CTCAGTGAAGATAAGGCTGATGATTGAAATCTACTCCATCGCCGATACATAGAGATAAGACTCAC
* * *
86986207 CAAAATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTTTATAGCCTGCTTCACTC
131 CAAAATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTAGTATATAGCCTGCTCCACTC
*
86986272 CTACTCAGTGAAGATAAGACTGATGATTGGAATCTGCTCCATCGCCGGTACGTAGAGATAAGATT
196 CTACTCAGTGAAGATAAGACTGATGACTGGAATCTGCTCCATCGCCGGTACGTAGAGATAAGATT
86986337 CACCAA
261 CACCAA
* * * * *
86986343 AATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTGTTATATTTAACCTGCTTCACTCC
1 AATTTGATCTGTTTCACTCCTGCTCAGTGAAGATAAGATCTG--GTATTTAGCCTGCTTCACTCC
86986408 TGCTCAGTGAAGATAAGGCTGATGAT
64 TGCTCAGTGAAGATAAGGCTGATGAT
86986434 ATCTGTAATC
Statistics
Matches: 316, Mismatches: 36, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
265 189 0.60
266 46 0.15
267 78 0.25
268 3 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (266 bp):
AATTTGATCTGTTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATTTAGCCTGCTTCACTCCTG
CTCAGTGAAGATAAGGCTGATGATTGAAATCTACTCCATCGCCGATACATAGAGATAAGACTCAC
CAAAATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTAGTATATAGCCTGCTCCACTC
CTACTCAGTGAAGATAAGACTGATGACTGGAATCTGCTCCATCGCCGGTACGTAGAGATAAGATT
CACCAA
Found at i:86989793 original size:25 final size:25
Alignment explanation
Indices: 86989760--86989807 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
86989750 ATGTGAAAGG
*
86989760 GGGTTGCTATGTGCTGATTCCCCGA
1 GGGTTGCTAAGTGCTGATTCCCCGA
86989785 GGGTTGCTAAGTGCTGATTCCCC
1 GGGTTGCTAAGTGCTGATTCCCC
86989808 TTCATTGGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.12, C:0.25, G:0.31, T:0.31
Consensus pattern (25 bp):
GGGTTGCTAAGTGCTGATTCCCCGA
Found at i:86989836 original size:100 final size:100
Alignment explanation
Indices: 86989684--86989897 Score: 351
Period size: 100 Copynumber: 2.1 Consensus size: 100
86989674 GTATATAAAG
** *
86989684 GGGTTGCTGTGTGCTGATTCCCCGATTATGGGTGGTGCTATGTGCGTGATCCACCATATCTTTGA
1 GGGTTGCTAAGTGCTGATTCCCC-ATTATGGGTGGTGCTAAGTGCGTGATCCACCATATCTTTGA
86989749 AATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCGA
65 AATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCGA
*
86989785 GGGTTGCTAAGTGCTGATTCCCC-TTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCTTTG
1 GGGTTGCTAAGTGCTGATTCCCCATT-ATGGGTGGTGCTAAGTGCG-TGATCCACCATATCTTTG
86989848 AAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCGA
64 AAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCGA
86989885 GGGTTGCTAAGTG
1 GGGTTGCTAAGTG
86989898 GATATCCATT
Statistics
Matches: 107, Mismatches: 4, Indels: 5
0.92 0.03 0.04
Matches are distributed among these distances:
99 2 0.02
100 83 0.78
101 22 0.21
ACGTcount: A:0.18, C:0.19, G:0.31, T:0.32
Consensus pattern (100 bp):
GGGTTGCTAAGTGCTGATTCCCCATTATGGGTGGTGCTAAGTGCGTGATCCACCATATCTTTGAA
ATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCGA
Found at i:86989928 original size:69 final size:72
Alignment explanation
Indices: 86989785--86989968 Score: 225
Period size: 69 Copynumber: 2.6 Consensus size: 72
86989775 GATTCCCCGA
* *
86989785 GGGTTGCTAAGTGCTGATTCCCCTTC-ATTGGTGG-TGCTAAGTGCGATATCCACCATATCTTTG
1 GGGTTGCTATGTGCTGATTCCCC--CGA--GG-GGTTGCTAAGTGCGATATCCACCATATATTTG
**
86989848 AAATGTGAAAGG
61 AAATGAAAAAGG
***
86989860 GGGTTGCTATGTGCTGATT-CCCCGA-GGGTTGCTAAGTG-GATATCCATTGTATATTTGAAATG
1 GGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCGATATCCACCATATATTTGAAATG
86989922 AAAAAGG
66 AAAAAGG
86989929 GGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAAGTG
1 GGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAAGTG
86989969 ATGATTCCCC
Statistics
Matches: 98, Mismatches: 7, Indels: 12
0.84 0.06 0.10
Matches are distributed among these distances:
69 46 0.47
70 16 0.16
71 13 0.13
72 1 0.01
73 1 0.01
74 3 0.03
75 18 0.18
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.32
Consensus pattern (72 bp):
GGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCGATATCCACCATATATTTGAAATG
AAAAAGG
Found at i:86997362 original size:104 final size:103
Alignment explanation
Indices: 86997182--86997402 Score: 363
Period size: 104 Copynumber: 2.1 Consensus size: 103
86997172 GTATATAAAA
** * *
86997182 GGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTTTG
1 GGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTTTG
86997247 AAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCGAG
66 AAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCGAG
* *
86997286 GGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCTTT
1 GGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCTTT
86997350 GAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCGAG
65 GAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCGAG
86997389 GGGTTGCTAAGTGC
1 GGGTTGCTAAGTGC
86997403 GATATCCATT
Statistics
Matches: 110, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
103 21 0.19
104 88 0.80
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.32
Consensus pattern (103 bp):
GGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTTTG
AAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCGAG
Found at i:86997454 original size:70 final size:72
Alignment explanation
Indices: 86997322--86997472 Score: 243
Period size: 71 Copynumber: 2.1 Consensus size: 72
86997312 TCATTGGTGG
* *
86997322 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
86997386 GAGGGGT
66 GAGGGGT
***
86997393 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
86997457 GAGGGGT
66 GAGGGGT
86997464 TGCTAAGTG
1 TGCTAAGTG
86997473 ATGATTCCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 24 0.32
71 50 0.68
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:87000644 original size:40 final size:40
Alignment explanation
Indices: 87000579--87000672 Score: 120
Period size: 40 Copynumber: 2.4 Consensus size: 40
87000569 CCATCTCCGT
* * * *
87000579 CCAACCCAACACACC-A-TGTGGGGATAAGATCGACCCAC
1 CCAACCCTACACACCAAGTATGGGGATAAAATCAACCCAC
* *
87000617 CCAGCCCTACACACCAAGTATGGGGATAAAATCAACCCAT
1 CCAACCCTACACACCAAGTATGGGGATAAAATCAACCCAC
87000657 CCAACCCTACACACCA
1 CCAACCCTACACACCA
87000673 CATGGTACTG
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
38 13 0.28
39 1 0.02
40 33 0.70
ACGTcount: A:0.36, C:0.38, G:0.14, T:0.12
Consensus pattern (40 bp):
CCAACCCTACACACCAAGTATGGGGATAAAATCAACCCAC
Found at i:87003103 original size:82 final size:82
Alignment explanation
Indices: 87003011--87003201 Score: 310
Period size: 82 Copynumber: 2.3 Consensus size: 82
87003001 CGTAGCCAGG
*
87003011 GGTATGAGTGATTTTATTTTGTTTGTTTCAGCTCTGCTGTTAAGATGCTGGAGTTGGTGTGGATT
1 GGTATGAGTGATTTTATTTTGTTTGTTTCAGCTCTGCTGTTAAGATGCTAGAGTTGGTGTGGATT
87003076 TTAAACCCTTAGAAAGT
66 TTAAACCCTTAGAAAGT
* *
87003093 GGTATGAGTGATTTTATTTTGTTTGTTTCAGCTCTGTTGTTAAGATGGTAGAGTTGGTGTGGATT
1 GGTATGAGTGATTTTATTTTGTTTGTTTCAGCTCTGCTGTTAAGATGCTAGAGTTGGTGTGGATT
87003158 TTAAACCCTTAGAAAGT
66 TTAAACCCTTAGAAAGT
* *
87003175 GGTTAGTTATGGGATTTTATTTTGTTT
1 GG-TA-TGA-GTGATTTTATTTTGTTT
87003202 TATCCTATTT
Statistics
Matches: 101, Mismatches: 5, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
82 81 0.80
83 2 0.02
84 2 0.02
85 16 0.16
ACGTcount: A:0.20, C:0.07, G:0.27, T:0.46
Consensus pattern (82 bp):
GGTATGAGTGATTTTATTTTGTTTGTTTCAGCTCTGCTGTTAAGATGCTAGAGTTGGTGTGGATT
TTAAACCCTTAGAAAGT
Found at i:87006592 original size:17 final size:18
Alignment explanation
Indices: 87006570--87006604 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
87006560 GATATGATAC
*
87006570 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
87006587 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
87006605 CAGGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:87006923 original size:19 final size:19
Alignment explanation
Indices: 87006895--87006967 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
87006885 AATCATATCT
*
87006895 TCTAAAATTGCATATCATA
1 TCTAAGATTGCATATCATA
87006914 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
87006931 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
87006950 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
87006968 TGAAGATTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
17 16 0.33
19 33 0.67
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:87006946 original size:14 final size:17
Alignment explanation
Indices: 87006907--87006959 Score: 79
Period size: 17 Copynumber: 3.0 Consensus size: 17
87006897 TAAAATTGCA
87006907 TATCATATCTAAGATTG
1 TATCATATCTAAGATTG
*
87006924 TATCATATCTAAGATTACA
1 TATCATATCTAAGATT--G
87006943 TATCATATCTAAGATTG
1 TATCATATCTAAGATTG
87006960 CATATCATTG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 16 0.50
19 16 0.50
ACGTcount: A:0.38, C:0.13, G:0.09, T:0.40
Consensus pattern (17 bp):
TATCATATCTAAGATTG
Found at i:87006974 original size:36 final size:36
Alignment explanation
Indices: 87006905--87006976 Score: 103
Period size: 36 Copynumber: 2.0 Consensus size: 36
87006895 TCTAAAATTG
*
87006905 CATATCATATCTAAGATTGTATCATATCTAAGATTA
1 CATATCATATCTAAGATTGTATCATATCGAAGATTA
87006941 CATATCATATCTAAGATTGCATATCAT-T-GAAGATTA
1 CATATCATATCTAAGATTG--TATCATATCGAAGATTA
87006977 TATTTCTATA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
36 26 0.79
37 1 0.03
38 6 0.18
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.38
Consensus pattern (36 bp):
CATATCATATCTAAGATTGTATCATATCGAAGATTA
Done.