Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 28 of 290
Found at i:9068846 original size:17 final size:17
Alignment explanation
Indices: 9068826--9068876 Score: 74
Period size: 17 Copynumber: 3.2 Consensus size: 17
9068816 TAACCCTTTT
9068826 TATTAATTTTGACATTA
1 TATTAATTTTGACATTA
9068843 TATT-ATTTT-AC-TT-
1 TATTAATTTTGACATTA
9068856 TATTAATTTTGACATTA
1 TATTAATTTTGACATTA
9068873 TATT
1 TATT
9068877 GTTTTACTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
13 4 0.13
14 7 0.23
15 4 0.13
16 7 0.23
17 8 0.27
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.59
Consensus pattern (17 bp):
TATTAATTTTGACATTA
Found at i:9068858 original size:15 final size:16
Alignment explanation
Indices: 9068821--9068885 Score: 55
Period size: 15 Copynumber: 4.2 Consensus size: 16
9068811 TAAAATAACC
*
9068821 CTTTTTATTAATTTTGA
1 CTTTATATT-ATTTTGA
*
9068838 CATTATATTATTTT-A
1 CTTTATATTATTTTGA
*
9068853 CTTTAT-TAATTTTGA
1 CTTTATATTATTTTGA
* *
9068868 CATTATATTGTTTT-A
1 CTTTATATTATTTTGA
9068883 CTT
1 CTT
9068886 ATTGATGTTA
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
14 6 0.16
15 15 0.39
16 10 0.26
17 7 0.18
ACGTcount: A:0.26, C:0.08, G:0.05, T:0.62
Consensus pattern (16 bp):
CTTTATATTATTTTGA
Found at i:9068858 original size:30 final size:30
Alignment explanation
Indices: 9068824--9068885 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
9068814 AATAACCCTT
9068824 TTTATTAATTTTGACATTATATTATTTTAC
1 TTTATTAATTTTGACATTATATTATTTTAC
*
9068854 TTTATTAATTTTGACATTATATTGTTTTAC
1 TTTATTAATTTTGACATTATATTATTTTAC
9068884 TT
1 TT
9068886 ATTGATGTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.27, C:0.06, G:0.05, T:0.61
Consensus pattern (30 bp):
TTTATTAATTTTGACATTATATTATTTTAC
Found at i:9069398 original size:49 final size:48
Alignment explanation
Indices: 9069295--9069388 Score: 122
Period size: 47 Copynumber: 2.0 Consensus size: 48
9069285 ATTTTTAATT
* *
9069295 TTAAAATTTAAAAACATATATATCAAATTTAAAATTGAAACATTTTATC
1 TTAAAATTTAAAAACATATATAACAAATTTAAAATT-AAACATTTTATA
*
9069344 TTAAAA-TTAAAAA-ATATATAACCAATTTCAAAATT-AACATTTTAT
1 TTAAAATTTAAAAACATATATAACAAATTT-AAAATTAAACATTTTAT
9069389 TTATCTAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
46 10 0.24
47 13 0.31
48 13 0.31
49 6 0.14
ACGTcount: A:0.52, C:0.09, G:0.01, T:0.38
Consensus pattern (48 bp):
TTAAAATTTAAAAACATATATAACAAATTTAAAATTAAACATTTTATA
Found at i:9072651 original size:31 final size:33
Alignment explanation
Indices: 9072615--9072679 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
9072605 GTATGGTATC
*
9072615 ATATTTA-AAAATTAAAAA-ATAAATTTTTTTT
1 ATATTTATAAAATTAAAAATATAAATTATTTTT
* *
9072646 ATATTTATATAATTAAAAATATTAATTATTTTT
1 ATATTTATAAAATTAAAAATATAAATTATTTTT
9072679 A
1 A
9072680 AATTACTTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 7 0.24
32 10 0.34
33 12 0.41
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (33 bp):
ATATTTATAAAATTAAAAATATAAATTATTTTT
Found at i:9073401 original size:22 final size:22
Alignment explanation
Indices: 9073373--9073420 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
9073363 ATTTTAATTT
9073373 TTAAATATTTAAAATATT-AATA
1 TTAAATA-TTAAAATATTCAATA
* *
9073395 TTAAATATTATAATTTTCAATA
1 TTAAATATTAAAATATTCAATA
9073417 TTAA
1 TTAA
9073421 TAAACATACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (22 bp):
TTAAATATTAAAATATTCAATA
Found at i:9073493 original size:25 final size:22
Alignment explanation
Indices: 9073465--9073515 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 22
9073455 TATAATAAAT
*
9073465 TATTAATATAATTAATATAATTTAC
1 TATTAAT-T-ATTAA-ATAATTTAA
9073490 TATT--TTATTAAATAATTTAA
1 TATTAATTATTAAATAATTTAA
9073510 TATTAA
1 TATTAA
9073516 AACTTTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
20 12 0.52
21 5 0.22
22 1 0.04
23 1 0.04
25 4 0.17
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (22 bp):
TATTAATTATTAAATAATTTAA
Found at i:9073506 original size:20 final size:21
Alignment explanation
Indices: 9073475--9073513 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
9073465 TATTAATATA
*
9073475 ATTAATATAATTTACTATTTT
1 ATTAATATAATTTAATATTTT
9073496 ATTAA-ATAATTTAATATT
1 ATTAATATAATTTAATATT
9073514 AAAACTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (21 bp):
ATTAATATAATTTAATATTTT
Found at i:9073626 original size:19 final size:18
Alignment explanation
Indices: 9073601--9073651 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 18
9073591 ATATTTATAT
9073601 TAATATTATAATAATAAA
1 TAATATTATAATAATAAA
* *
9073619 TAAATATTACAATTATAAA
1 T-AATATTATAATAATAAA
9073638 T-ATATTAATAATAA
1 TAATATT-ATAATAA
9073652 ATGTTTTATA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
17 5 0.19
18 6 0.22
19 16 0.59
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (18 bp):
TAATATTATAATAATAAA
Found at i:9077194 original size:17 final size:17
Alignment explanation
Indices: 9077167--9077209 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
9077157 TTGATCCATT
*
9077167 TTTTCTATTTTTAATAAA
1 TTTT-TATTTTTAAAAAA
9077185 TTTTTATTTTTTAAAAAA
1 TTTTTA-TTTTTAAAAAA
*
9077203 GTTTTAT
1 TTTTTAT
9077210 AAAATTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 3 0.14
18 19 0.86
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (17 bp):
TTTTTATTTTTAAAAAA
Found at i:9077196 original size:19 final size:18
Alignment explanation
Indices: 9077174--9077209 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
9077164 ATTTTTTCTA
* *
9077174 TTTTTAATAAATTTTTAT
1 TTTTTAAAAAAGTTTTAT
9077192 TTTTTAAAAAAGTTTTAT
1 TTTTTAAAAAAGTTTTAT
9077210 AAAATTTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (18 bp):
TTTTTAAAAAAGTTTTAT
Found at i:9085640 original size:56 final size:58
Alignment explanation
Indices: 9085554--9085688 Score: 175
Period size: 56 Copynumber: 2.3 Consensus size: 58
9085544 TACCGTTTTG
* **
9085554 ATATATTTGCTATATTGAGTATGTTCGGTA-TTTTTCTGTATATCTTGGTA-TTTTCA
1 ATATATTTGATATATTGAGTATGTTCGGTATTTTTTCTGTATATCTTAATATTTTTCA
* * **
9085610 ATATATTTGATATATTGAGTATGTTGGGTATGTTTTTTTTGTATATCTTAATATTTTTTG
1 ATATATTTGATATATTGAGTATGTTCGGTA--TTTTTTCTGTATATCTTAATATTTTTCA
9085670 ATATATTTGATATATTGAG
1 ATATATTTGATATATTGAG
9085689 CATTTCTTTA
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
56 28 0.41
59 17 0.25
60 23 0.34
ACGTcount: A:0.24, C:0.04, G:0.16, T:0.55
Consensus pattern (58 bp):
ATATATTTGATATATTGAGTATGTTCGGTATTTTTTCTGTATATCTTAATATTTTTCA
Found at i:9090936 original size:29 final size:29
Alignment explanation
Indices: 9090903--9090958 Score: 87
Period size: 29 Copynumber: 1.9 Consensus size: 29
9090893 TAAACACTCC
9090903 ACTAAACCGA-CCACTAACTCCATCACCTT
1 ACTAAACC-ATCCACTAACTCCATCACCTT
*
9090932 ACTAAACCATCCACTACCTCCATCACC
1 ACTAAACCATCCACTAACTCCATCACC
9090959 CCCACACCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 1 0.04
29 24 0.96
ACGTcount: A:0.34, C:0.45, G:0.02, T:0.20
Consensus pattern (29 bp):
ACTAAACCATCCACTAACTCCATCACCTT
Found at i:9090979 original size:37 final size:37
Alignment explanation
Indices: 9090926--9091000 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
9090916 CTAACTCCAT
*
9090926 CACCTTACTAAACCATCCACTACCTCCATCACCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
9090963 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
9091000 C
1 C
9091001 TAACTCCATC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.29, C:0.53, G:0.00, T:0.17
Consensus pattern (37 bp):
CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
Found at i:9091002 original size:18 final size:18
Alignment explanation
Indices: 9090942--9091013 Score: 67
Period size: 18 Copynumber: 3.9 Consensus size: 18
9090932 ACTAAACCAT
9090942 CCACTACCTCCATCACCC
1 CCACTACCTCCATCACCC
* * *
9090960 CCAC-ACC-CTACTAAACCAT
1 CCACTACCTCCA-T-CACC-C
9090979 CCACTACCTCCATCACCC
1 CCACTACCTCCATCACCC
*
9090997 CCACTAACTCCATCACC
1 CCACTACCTCCATCACC
9091014 GTACTTGTTA
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
16 2 0.05
17 4 0.10
18 23 0.55
19 7 0.17
20 4 0.10
21 2 0.05
ACGTcount: A:0.28, C:0.56, G:0.00, T:0.17
Consensus pattern (18 bp):
CCACTACCTCCATCACCC
Found at i:9091424 original size:19 final size:18
Alignment explanation
Indices: 9091400--9091436 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
9091390 TTATGTTTCA
9091400 TATTATTATATTATTTATT
1 TATTATTATA-TATTTATT
9091419 TATTATTATATATTTATT
1 TATTATTATATATTTATT
9091437 ATGTAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TATTATTATATATTTATT
Found at i:9091448 original size:17 final size:14
Alignment explanation
Indices: 9091408--9091438 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
9091398 CATATTATTA
*
9091408 TATTATTTATTTAT
1 TATTATATATTTAT
9091422 TATTATATATTTAT
1 TATTATATATTTAT
9091436 TAT
1 TAT
9091439 GTAAATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTATATATTTAT
Found at i:9091673 original size:21 final size:21
Alignment explanation
Indices: 9091644--9091683 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
9091634 ATTTTTAATA
9091644 TTATCATCAACATATTTTTTG
1 TTATCATCAACATATTTTTTG
* * *
9091665 TTATTATCATCATGTTTTT
1 TTATCATCAACATATTTTT
9091684 AATATTATTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.12, G:0.05, T:0.57
Consensus pattern (21 bp):
TTATCATCAACATATTTTTTG
Found at i:9092127 original size:126 final size:126
Alignment explanation
Indices: 9091897--9092140 Score: 443
Period size: 126 Copynumber: 1.9 Consensus size: 126
9091887 CATTGATCTT
*
9091897 CTCTCAAAATTTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCAAAAAATCGTGCCCTA
1 CTCTAAAAATTTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCAAAAAATCGTGCCCTA
9091962 ACGTACTGGGTTTCCCTTTCTTTGTTTGTCTTGAATATTCAAATATCCTCTTACCAGTTCA
66 ACGTACTGGGTTTCCCTTTCTTTGTTTGTCTTGAATATTCAAATATCCTCTTACCAGTTCA
*
9092023 CTCTAAAAATTTTTCAAAATAAAGGTAATGTTCGGTATTTAAAGAATTCAAAAAATCGTGCCCTA
1 CTCTAAAAATTTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCAAAAAATCGTGCCCTA
* * *
9092088 ACGTACTGGGTTTCGCTTTCTTTGTTTGTTTTGAATATTCGAATATCCTCTTA
66 ACGTACTGGGTTTCCCTTTCTTTGTTTGTCTTGAATATTCAAATATCCTCTTA
9092141 AAGCTAAAAC
Statistics
Matches: 113, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
126 113 1.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.39
Consensus pattern (126 bp):
CTCTAAAAATTTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCAAAAAATCGTGCCCTA
ACGTACTGGGTTTCCCTTTCTTTGTTTGTCTTGAATATTCAAATATCCTCTTACCAGTTCA
Found at i:9098304 original size:14 final size:13
Alignment explanation
Indices: 9098282--9098329 Score: 53
Period size: 12 Copynumber: 3.6 Consensus size: 13
9098272 AAAAAAATAG
9098282 AAGAGAAAAAGGACA
1 AAGA-AAAAAGGA-A
9098297 AAGAAAAAAGGAA
1 AAGAAAAAAGGAA
*
9098310 AAGGAAAAA-GAA
1 AAGAAAAAAGGAA
*
9098322 GAGAAAAA
1 AAGAAAAA
9098330 TAAAAAAAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
12 9 0.30
13 9 0.30
14 8 0.27
15 4 0.13
ACGTcount: A:0.73, C:0.02, G:0.25, T:0.00
Consensus pattern (13 bp):
AAGAAAAAAGGAA
Found at i:9098339 original size:16 final size:16
Alignment explanation
Indices: 9098282--9098343 Score: 58
Period size: 14 Copynumber: 4.0 Consensus size: 16
9098272 AAAAAAATAG
* *
9098282 AAGAGAAAAAG-GACA
1 AAGAAAAAAAGAGAAA
9098297 AAG-AAAAAAG-GAAA
1 AAGAAAAAAAGAGAAA
*
9098311 AGGAAAAAGAAGAGAAA
1 AAGAAAAA-AAGAGAAA
*
9098328 AATAAAAAAAGAGAAA
1 AAGAAAAAAAGAGAAA
9098344 GAAAAGAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
14 11 0.28
15 7 0.18
16 11 0.28
17 10 0.26
ACGTcount: A:0.74, C:0.02, G:0.23, T:0.02
Consensus pattern (16 bp):
AAGAAAAAAAGAGAAA
Found at i:9098354 original size:16 final size:16
Alignment explanation
Indices: 9098300--9098343 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
9098290 AAGGACAAAG
**
9098300 AAAAAAG-GAAAAGGA
1 AAAAAAGAGAAAAATA
9098315 AAAAGAAGAGAAAAATA
1 AAAA-AAGAGAAAAATA
9098332 AAAAAAGAGAAA
1 AAAAAAGAGAAA
9098344 GAAAAGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 4 0.16
16 11 0.44
17 10 0.40
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.02
Consensus pattern (16 bp):
AAAAAAGAGAAAAATA
Found at i:9099205 original size:27 final size:27
Alignment explanation
Indices: 9099169--9099221 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
9099159 TAAAATTGCG
9099169 GGGGGAATGAATTGAAGAGGAATCAGC
1 GGGGGAATGAATTGAAGAGGAATCAGC
9099196 GGGGGAATGAATTGAAGAGGAATCAG
1 GGGGGAATGAATTGAAGAGGAATCAG
9099222 ATTATATTCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.38, C:0.06, G:0.42, T:0.15
Consensus pattern (27 bp):
GGGGGAATGAATTGAAGAGGAATCAGC
Found at i:9099928 original size:89 final size:88
Alignment explanation
Indices: 9099654--9099941 Score: 232
Period size: 89 Copynumber: 3.2 Consensus size: 88
9099644 TCTTATCCCA
* * ** *
9099654 CTGAGCAGGAGTGGAA-CAGGCTAAATATAGCAGATCTCATCCTACTGGCAGGAGTGGAATAGAT
1 CTGAGCAGGAGT-GAAGCAGACTAAATATAGCAGATCTCATCCCACTGGTTGGAGTGGAA-ATAT
9099718 CAAATTTCGACAGATCTTATCTTCG
64 CAAATTTCGACAGATCTTATCTTCG
* * * * * * * * *
9099743 CTGATCAGGAGCGGAGCAGA-TCAAATTTTGGC-GAATCTTA-CCTCAAT-GTAT--AG-GCAAT
1 CTGAGCAGGAGTGAAGCAGACT-AAA-TATAGCAG-ATCTCATCC-CACTGGT-TGGAGTGGAAA
* * * * *
9099801 TGAGCAGATTTCAGACACCAGCCTTATCTTCA
61 T-ATCAAATTTC-GACA-GA-TCTTATCTTCG
9099833 CTGAGCAGGAGTGAAGCAGACTAAATATAGCAGATCTCATCCCACTGGTTGGAGTGGAACATATC
1 CTGAGCAGGAGTGAAGCAGACTAAATATAGCAGATCTCATCCCACTGGTTGGAGTGGAA-ATATC
9099898 AAATTTCGACAGATCTTATCTTCG
65 AAATTTCGACAGATCTTATCTTCG
*
9099922 CTGAGCAGGAGTGGAGCAGA
1 CTGAGCAGGAGTGAAGCAGA
9099942 TCAAATTTTG
Statistics
Matches: 147, Mismatches: 34, Indels: 36
0.68 0.16 0.17
Matches are distributed among these distances:
87 11 0.07
88 9 0.06
89 62 0.42
90 46 0.31
91 7 0.05
92 11 0.07
93 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (88 bp):
CTGAGCAGGAGTGAAGCAGACTAAATATAGCAGATCTCATCCCACTGGTTGGAGTGGAAATATCA
AATTTCGACAGATCTTATCTTCG
Found at i:9099952 original size:179 final size:179
Alignment explanation
Indices: 9099640--9100082 Score: 676
Period size: 179 Copynumber: 2.5 Consensus size: 179
9099630 TAGATTTTGG
* * *
9099640 CAAGTCTTATCC-CACTGAGCAGGAGTGGAACAGGCTAAATATAGCAGATCTCATCCTACTGGCA
1 CAAGCCTTATCCTCACTGAGCAGGAGTGGAACAGGCTAAATATAGCAGATCTCATCCCACTGGAA
* *
9099704 GGAGTGGAATAGATCAAATTTCGACAGATCTTATCTTCGCTGATCAGGAGCGGAGCAGATCAAAT
66 GGAGTGGAACAGATCAAATTTCGACAGATCTTATCTTCGCTGAGCAGGAGCGGAGCAGATCAAAT
* *
9099769 TTTGGCGAATCTTACCTCAATGTATAGGCAATTGAGCAGATTTCAGACA
131 TTTGGCGAATCTTACCTCAATGTATAGACAATAGAGCAGATTTCAGACA
* * * *
9099818 CCAGCCTTATCTTCACTGAGCAGGAGT-GAAGCAGACTAAATATAGCAGATCTCATCCCACTGGT
1 CAAGCCTTATCCTCACTGAGCAGGAGTGGAA-CAGGCTAAATATAGCAGATCTCATCCCACTGGA
* * *
9099882 TGGAGTGGAACATATCAAATTTCGACAGATCTTATCTTCGCTGAGCAGGAGTGGAGCAGATCAAA
65 AGGAGTGGAACAGATCAAATTTCGACAGATCTTATCTTCGCTGAGCAGGAGCGGAGCAGATCAAA
* * * *
9099947 TTTTGGCGAATCTTATCTCCATGTATCGACAATAGAGCAGATTTCAGCCA
130 TTTTGGCGAATCTTACCTCAATGTATAGACAATAGAGCAGATTTCAGACA
* *
9099997 CAAGCCTTATCCT-ACTGAGAAGGAGTGGAACAGGTTAAATATAGCAGATCTCATCCCACTGGAA
1 CAAGCCTTATCCTCACTGAGCAGGAGTGGAACAGGCTAAATATAGCAGATCTCATCCCACTGGAA
9100061 GGAGTGGAACAGATCAAATTTC
66 GGAGTGGAACAGATCAAATTTC
9100083 AGCGGATCTT
Statistics
Matches: 237, Mismatches: 25, Indels: 6
0.88 0.09 0.02
Matches are distributed among these distances:
178 75 0.32
179 162 0.68
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (179 bp):
CAAGCCTTATCCTCACTGAGCAGGAGTGGAACAGGCTAAATATAGCAGATCTCATCCCACTGGAA
GGAGTGGAACAGATCAAATTTCGACAGATCTTATCTTCGCTGAGCAGGAGCGGAGCAGATCAAAT
TTTGGCGAATCTTACCTCAATGTATAGACAATAGAGCAGATTTCAGACA
Found at i:9100201 original size:133 final size:132
Alignment explanation
Indices: 9099926--9100254 Score: 480
Period size: 133 Copynumber: 2.5 Consensus size: 132
9099916 TCTTCGCTGA
* ** * * *
9099926 GCAGGAGTGGAGCAGATCAAATTTTGGCGAATCTTATCTCCATGTATCGACAATAGAGCAGATTT
1 GCAGGAGTGGAACAGATCAAATTTCAGCGGATCTTATCTCCATGTATCGGCAATGGAGCAGATTT
*
9099991 CAGCCACAAGCCTTATCCTACTGAGAAGGAGTGGAACAGGTTAAATATAGCAGATCTCATCCCAC
66 CAGCCACAAGCCTTATCCTACTGAGAAGGAGTGGAACAGGCTAAATATAGCAGATCTCATCCCAC
9100056 TG
131 TG
* * * *
9100058 GAAGGAGTGGAACAGATCAAATTTCAGCGGATCTTGTCTCCATGTATCGGTAATGGAGTAGATTT
1 GCAGGAGTGGAACAGATCAAATTTCAGCGGATCTTATCTCCATGTATCGGCAATGGAGCAGATTT
* * * *
9100123 CAGCCATC-AGCCTTATCTTCACTGAGCAGGAGTGGAATAGGCTAAATATAGCAGATCTCATTCC
66 CAGCCA-CAAGCCTTATCCT-ACTGAGAAGGAGTGGAACAGGCTAAATATAGCAGATCTCATCCC
9100187 ACTG
129 ACTG
* *
9100191 GCAGGAGTGGAACAGATCAAATTTCAGCGGATCTTATCTCAATGTATCAGCAATGGAGCAGATT
1 GCAGGAGTGGAACAGATCAAATTTCAGCGGATCTTATCTCCATGTATCGGCAATGGAGCAGATT
9100255 CAAACCACCA
Statistics
Matches: 174, Mismatches: 21, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
132 71 0.41
133 103 0.59
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.26
Consensus pattern (132 bp):
GCAGGAGTGGAACAGATCAAATTTCAGCGGATCTTATCTCCATGTATCGGCAATGGAGCAGATTT
CAGCCACAAGCCTTATCCTACTGAGAAGGAGTGGAACAGGCTAAATATAGCAGATCTCATCCCAC
TG
Found at i:9100408 original size:44 final size:44
Alignment explanation
Indices: 9100360--9100661 Score: 261
Period size: 44 Copynumber: 6.9 Consensus size: 44
9100350 CAGGCTTTAA
*
9100360 CTCCCTAAGCAATAGGGTAACAAGCTGAAGATTACAGATCTTAT
1 CTCCCTAAGCAATAGGGTAACAAGCTAAAGATTACAGATCTTAT
* * * * *
9100404 CTCCCTAAGTAATAGTGG-AGC-AGATCAAAGA-TACACGCT-TTAA
1 CTCCCTAAGCAATAG-GGTAACAAGCT-AAAGATTACA-GATCTTAT
*
9100447 CTCCCTAAGCAATAGGGTAACAAGCTAAAGATTATAGATCTTAT
1 CTCCCTAAGCAATAGGGTAACAAGCTAAAGATTACAGATCTTAT
* * * *
9100491 CTCCCTAAGCAATAGTGG-AGC-AGATCAAAGA-TACATGCT-TTAA
1 CTCCCTAAGCAATAG-GGTAACAAGCT-AAAGATTACA-GATCTTAT
*
9100534 CTCCCTAAGCAATAGGGTAACAAGCTAAAGATTATAGATCTTAT
1 CTCCCTAAGCAATAGGGTAACAAGCTAAAGATTACAGATCTTAT
* * * *
9100578 CTCCCTAAGCAATAGTGG-AGC-AGATCAAAGA-TACACG-CCTTAA
1 CTCCCTAAGCAATAG-GGTAACAAGCT-AAAGATTACA-GATCTTAT
* *
9100621 CCCCCTAAGCAGTAGGGTAACAAGCTAAA-ATTTACAGATCT
1 CTCCCTAAGCAATAGGGTAACAAGCTAAAGA-TTACAGATCT
9100662 GGGCTCGCCG
Statistics
Matches: 204, Mismatches: 32, Indels: 44
0.73 0.11 0.16
Matches are distributed among these distances:
42 7 0.03
43 95 0.47
44 96 0.47
45 6 0.03
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.24
Consensus pattern (44 bp):
CTCCCTAAGCAATAGGGTAACAAGCTAAAGATTACAGATCTTAT
Found at i:9100467 original size:87 final size:87
Alignment explanation
Indices: 9100268--9100920 Score: 569
Period size: 87 Copynumber: 7.6 Consensus size: 87
9100258 ACCACCAGTC
* * * * * * * **
9100268 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAACTACATATCTTGTCTCATTAAGCAATAGTG
1 TTAACTCCCTAAGCAATAGGGTAACAAGCTAAAGATTACAGATCTTATCTCCCTAAGCAATAGTG
* * * *
9100333 G-GACAGATTAAAAACAGCAGGCT
66 GAG-CAGATCAAAGATA-CACGCT
* *
9100356 TTAACTCCCTAAGCAATAGGGTAACAAGCTGAAGATTACAGATCTTATCTCCCTAAGTAATAGTG
1 TTAACTCCCTAAGCAATAGGGTAACAAGCTAAAGATTACAGATCTTATCTCCCTAAGCAATAGTG
9100421 GAGCAGATCAAAGATACACGCT
66 GAGCAGATCAAAGATACACGCT
*
9100443 TTAACTCCCTAAGCAATAGGGTAACAAGCTAAAGATTATAGATCTTATCTCCCTAAGCAATAGTG
1 TTAACTCCCTAAGCAATAGGGTAACAAGCTAAAGATTACAGATCTTATCTCCCTAAGCAATAGTG
*
9100508 GAGCAGATCAAAGATACATGCT
66 GAGCAGATCAAAGATACACGCT
*
9100530 TTAACTCCCTAAGCAATAGGGTAACAAGCTAAAGATTATAGATCTTATCTCCCTAAGCAATAGTG
1 TTAACTCCCTAAGCAATAGGGTAACAAGCTAAAGATTACAGATCTTATCTCCCTAAGCAATAGTG
*
9100595 GAGCAGATCAAAGATACACGCC
66 GAGCAGATCAAAGATACACGCT
* * *** * * *
9100617 TTAACCCCCTAAGCAGTAGGGTAACAAGCTAAA-ATTTACAGATCTGGGCTCGCC-GAGCAGTGG
1 TTAACTCCCTAAGCAATAGGGTAACAAGCTAAAGA-TTACAGATCTTATCTC-CCTAAGCAATAG
* * * * *
9100680 CGGAGCAGGTCGAAG--ACTCGCC
64 TGGAGCAGATCAAAGATACACGCT
* * * * ** * * *
9100702 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAGTTTACAGA-CTTGGGCTCTCC-GAGCAGTGG
1 TTAACTCCCTAAGCAATAGGGTAACAAGCTAAAGATTACAGATCTT-ATCTC-CCTAAGCAATAG
* * *
9100765 TGGAGCAGGTCAAAG--ACTCGCC
64 TGGAGCAGATCAAAGATACACGCT
* * * * ** * * *
9100787 TCAACCCCCTAAGCAGTAGGGTAAC-AGACTAAA-ATTTACAGATCCTGGCTCTCTAAGCAGTGG
1 TTAACTCCCTAAGCAATAGGGTAACAAG-CTAAAGA-TTACAGATCTTATCTCCCTAAGCAATAG
* * * * *
9100850 TGGAACAGGTCGAAGA-A-TCGCC
64 TGGAGCAGATCAAAGATACACGCT
* * * * *
9100872 ATAACCCCCTAAGCAGTAGGGTAACAGGCTAAA-ATTGCAGATCTTATCT
1 TTAACTCCCTAAGCAATAGGGTAACAAGCTAAAGATTACAGATCTTATCT
9100921 TCGTTGAGCA
Statistics
Matches: 499, Mismatches: 55, Indels: 26
0.86 0.09 0.04
Matches are distributed among these distances:
84 15 0.03
85 177 0.35
86 5 0.01
87 234 0.47
88 67 0.13
89 1 0.00
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.22
Consensus pattern (87 bp):
TTAACTCCCTAAGCAATAGGGTAACAAGCTAAAGATTACAGATCTTATCTCCCTAAGCAATAGTG
GAGCAGATCAAAGATACACGCT
Found at i:9100687 original size:174 final size:171
Alignment explanation
Indices: 9100356--9100920 Score: 637
Period size: 174 Copynumber: 3.3 Consensus size: 171
9100346 ACAGCAGGCT
* * *
9100356 TTAACTCCCTAAGCAATAGGGTAACAAGCTGAAGATTACAGATCTTATCTCCCTAAGTAATAGTG
1 TTAACCCCCTAAGCAATAGGGTAACAAGCTAAAGATTACAGATCTTATCTCCCTAAGCAATAGTG
* * * *
9100421 GAGCAGATCAAAGATACACGCTTTAACTCCCTAAGCAATAGGGTAACAAGCTAAAGA-TTATAGA
66 GAGCAGATCAAAGATACACGCCTTAACCCCCTAAGCAGTAGGGTAACAAGCTAAA-ATTTACAGA
** * * * * *
9100485 TCTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAGATACAT-GCT
130 TC-TGGCTCCC-AAGCAGTGGTGGAGCAGGTCGAAG--ACATCGCC
* *
9100530 TTAACTCCCTAAGCAATAGGGTAACAAGCTAAAGATTATAGATCTTATCTCCCTAAGCAATAGTG
1 TTAACCCCCTAAGCAATAGGGTAACAAGCTAAAGATTACAGATCTTATCTCCCTAAGCAATAGTG
9100595 GAGCAGATCAAAGATACACGCCTTAACCCCCTAAGCAGTAGGGTAACAAGCTAAAATTTACAGAT
66 GAGCAGATCAAAGATACACGCCTTAACCCCCTAAGCAGTAGGGTAACAAGCTAAAATTTACAGAT
* *
9100660 CTGGGCTCGCCGAGCAGTGGCGGAGCAGGTCGAAGAC-TCGCC
131 CT-GGCTC-CCAAGCAGTGGTGGAGCAGGTCGAAGACATCGCC
* * * ** * * *
9100702 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAGTTTACAGA-CTTGGGCTCTCC-GAGCAGTGG
1 TTAACCCCCTAAGCAATAGGGTAACAAGCTAAAGATTACAGATCTT-ATCTC-CCTAAGCAATAG
* * *
9100765 TGGAGCAGGTCAAAG--ACTCGCCTCAACCCCCTAAGCAGTAGGGTAAC-AGACTAAAATTTACA
64 TGGAGCAGATCAAAGATACACGCCTTAACCCCCTAAGCAGTAGGGTAACAAG-CTAAAATTTACA
* *
9100827 GATCCTGGCTCTCTAAGCAGTGGTGGAACAGGTCGAAGA-ATCGCC
128 GAT-CTGGCTC-CCAAGCAGTGGTGGAGCAGGTCGAAGACATCGCC
* * * *
9100872 ATAACCCCCTAAGCAGTAGGGTAACAGGCTAAA-ATTGCAGATCTTATCT
1 TTAACCCCCTAAGCAATAGGGTAACAAGCTAAAGATTACAGATCTTATCT
9100921 TCGTTGAGCA
Statistics
Matches: 342, Mismatches: 39, Indels: 25
0.84 0.10 0.06
Matches are distributed among these distances:
169 10 0.03
170 113 0.33
171 6 0.02
172 64 0.19
173 4 0.01
174 143 0.42
175 2 0.01
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.22
Consensus pattern (171 bp):
TTAACCCCCTAAGCAATAGGGTAACAAGCTAAAGATTACAGATCTTATCTCCCTAAGCAATAGTG
GAGCAGATCAAAGATACACGCCTTAACCCCCTAAGCAGTAGGGTAACAAGCTAAAATTTACAGAT
CTGGCTCCCAAGCAGTGGTGGAGCAGGTCGAAGACATCGCC
Found at i:9100727 original size:85 final size:85
Alignment explanation
Indices: 9100443--9100915 Score: 442
Period size: 85 Copynumber: 5.5 Consensus size: 85
9100433 GATACACGCT
* * * *** * * *
9100443 TTAACTCCCTAAGCAATAGGGTAACAAGCTAAAGA-TTATAGATCTTATCTC-CCTAAGCAATAG
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTAAA-ATTTACAGATCTGGGCTCTCC-GAGCAGTGG
* * *
9100506 TGGAGCAGATCAAAGA-TACATGCT
64 TGGAGCAGGTCGAAGACT-C--GCC
* * * *** * * *
9100530 TTAACTCCCTAAGCAATAGGGTAACAAGCTAAAGA-TTATAGATCTTATCTC-CCTAAGCAATAG
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTAAA-ATTTACAGATCTGGGCTCTCC-GAGCAGTGG
* * *
9100593 TGGAGCAGATCAAAGATACACGCC
64 TGGAGCAGGTCGAAG--ACTCGCC
* *
9100617 TTAACCCCCTAAGCAGTAGGGTAACAAGCTAAAATTTACAGATCTGGGCTCGCCGAGCAGTGGCG
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTAAAATTTACAGATCTGGGCTCTCCGAGCAGTGGTG
9100682 GAGCAGGTCGAAGACTCGCC
66 GAGCAGGTCGAAGACTCGCC
* *
9100702 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAGTTTACAGA-CTTGGGCTCTCCGAGCAGTGGT
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTAAAATTTACAGATC-TGGGCTCTCCGAGCAGTGGT
*
9100766 GGAGCAGGTCAAAGACTCGCC
65 GGAGCAGGTCGAAGACTCGCC
* **
9100787 TCAACCCCCTAAGCAGTAGGGTAAC-AGACTAAAATTTACAGATCCT-GGCTCTCTAAGCAGTGG
1 TTAACCCCCTAAGCAGTAGGGTAACAAG-CTAAAATTTACAGAT-CTGGGCTCTCCGAGCAGTGG
* *
9100850 TGGAACAGGTCGAAGAATCGCC
64 TGGAGCAGGTCGAAGACTCGCC
* * *
9100872 ATAACCCCCTAAGCAGTAGGGTAACAGGCTAAAA-TTGCAGATCT
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTAAAATTTACAGATCT
9100916 TATCTTCGTT
Statistics
Matches: 344, Mismatches: 32, Indels: 24
0.86 0.08 0.06
Matches are distributed among these distances:
83 2 0.01
84 9 0.03
85 184 0.53
86 3 0.01
87 142 0.41
88 2 0.01
89 2 0.01
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.21
Consensus pattern (85 bp):
TTAACCCCCTAAGCAGTAGGGTAACAAGCTAAAATTTACAGATCTGGGCTCTCCGAGCAGTGGTG
GAGCAGGTCGAAGACTCGCC
Found at i:9101186 original size:29 final size:29
Alignment explanation
Indices: 9101153--9101219 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
9101143 CCAAATTAAA
9101153 CACCCCACTAAACCGA-CCACTAACTCCAT
1 CACCCCACTAAACC-ATCCACTAACTCCAT
* *
9101182 CACCCTACTAAACCATCCACTACCTCCAT
1 CACCCCACTAAACCATCCACTAACTCCAT
9101211 CAGCCCCAC
1 CA-CCCCAC
9101220 ACCCTACTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 1 0.03
29 27 0.82
30 5 0.15
ACGTcount: A:0.31, C:0.51, G:0.03, T:0.15
Consensus pattern (29 bp):
CACCCCACTAAACCATCCACTAACTCCAT
Found at i:9101263 original size:18 final size:18
Alignment explanation
Indices: 9101236--9101271 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
9101226 CTAAATCATC
*
9101236 CACTACCTCCATCACCCT
1 CACTAACTCCATCACCCT
9101254 CACTAACTCCATCACCCT
1 CACTAACTCCATCACCCT
9101272 ACTTGTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.53, G:0.00, T:0.22
Consensus pattern (18 bp):
CACTAACTCCATCACCCT
Found at i:9101680 original size:19 final size:18
Alignment explanation
Indices: 9101656--9101692 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
9101646 TTATGTTTCA
9101656 TATTATTATATTATTTATT
1 TATTATTATA-TATTTATT
9101675 TATTATTATATATTTATT
1 TATTATTATATATTTATT
9101693 ATGTAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TATTATTATATATTTATT
Found at i:9101704 original size:17 final size:14
Alignment explanation
Indices: 9101664--9101694 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
9101654 CATATTATTA
*
9101664 TATTATTTATTTAT
1 TATTATATATTTAT
9101678 TATTATATATTTAT
1 TATTATATATTTAT
9101692 TAT
1 TAT
9101695 GTAAATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTATATATTTAT
Found at i:9101922 original size:21 final size:21
Alignment explanation
Indices: 9101898--9101939 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
9101888 CCAAATTTAA
9101898 TGTTATCATCAACATATTTTT
1 TGTTATCATCAACATATTTTT
* * *
9101919 TGTTATTATCATCATGTTTTT
1 TGTTATCATCAACATATTTTT
9101940 AATATTATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.12, G:0.07, T:0.57
Consensus pattern (21 bp):
TGTTATCATCAACATATTTTT
Found at i:9103710 original size:2 final size:2
Alignment explanation
Indices: 9103703--9103741 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
9103693 TATTGTTTGT
9103703 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
9103742 TTACTTTATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:9103841 original size:16 final size:17
Alignment explanation
Indices: 9103820--9103852 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
9103810 TGATACTTAA
9103820 TTTGTT-TTTAATATTT
1 TTTGTTCTTTAATATTT
*
9103836 TTTGTTCTTTAGTATTT
1 TTTGTTCTTTAATATTT
9103853 GTACATCTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.15, C:0.03, G:0.09, T:0.73
Consensus pattern (17 bp):
TTTGTTCTTTAATATTT
Found at i:9107153 original size:9 final size:9
Alignment explanation
Indices: 9107139--9107189 Score: 84
Period size: 9 Copynumber: 5.7 Consensus size: 9
9107129 TTTGGTTAAA
9107139 AATTAACTG
1 AATTAACTG
9107148 AATTAACTG
1 AATTAACTG
*
9107157 AATTAACTT
1 AATTAACTG
*
9107166 AATTAACCG
1 AATTAACTG
9107175 AATTAACTG
1 AATTAACTG
9107184 AATTAA
1 AATTAA
9107190 ATCACTACAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 38 1.00
ACGTcount: A:0.47, C:0.12, G:0.08, T:0.33
Consensus pattern (9 bp):
AATTAACTG
Found at i:9107315 original size:37 final size:37
Alignment explanation
Indices: 9107189--9107298 Score: 175
Period size: 37 Copynumber: 2.9 Consensus size: 37
9107179 AACTGAATTA
* *
9107189 AATCACTACATAATTAAAAATATTACACAAGTCTTTG
1 AATCACTACATAATTAAAAACATTACATAAGTCTTTG
* *
9107226 AATCACTATATAATAAAAAAACATTACATAAGTCTTTG
1 AATCACTACATAAT-TAAAAACATTACATAAGTCTTTG
9107264 AATCACTACATAATTAAAAACATTACATAAGTCTT
1 AATCACTACATAATTAAAAACATTACATAAGTCTT
9107299 GAAATTAACA
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
37 33 0.50
38 33 0.50
ACGTcount: A:0.48, C:0.15, G:0.05, T:0.32
Consensus pattern (37 bp):
AATCACTACATAATTAAAAACATTACATAAGTCTTTG
Found at i:9110200 original size:2 final size:2
Alignment explanation
Indices: 9110193--9110223 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
9110183 TTTATTGATT
9110193 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9110224 GATACTTGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9110975 original size:13 final size:13
Alignment explanation
Indices: 9110957--9110993 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
9110947 AATAAAAATT
9110957 ATTAGGTTGGGAA
1 ATTAGGTTGGGAA
*
9110970 ATTAGGTTGGGTA
1 ATTAGGTTGGGAA
*
9110983 ATTGGGTTGGG
1 ATTAGGTTGGG
9110994 TTGGGTTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.22, C:0.00, G:0.43, T:0.35
Consensus pattern (13 bp):
ATTAGGTTGGGAA
Found at i:9110994 original size:5 final size:5
Alignment explanation
Indices: 9110984--9111009 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
9110974 GGTTGGGTAA
9110984 TTGGG TTGGG TTGGG TTGGG TTGGG T
1 TTGGG TTGGG TTGGG TTGGG TTGGG T
9111010 AGTTGGGTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.58, T:0.42
Consensus pattern (5 bp):
TTGGG
Found at i:9110994 original size:13 final size:13
Alignment explanation
Indices: 9110961--9111017 Score: 51
Period size: 13 Copynumber: 4.2 Consensus size: 13
9110951 AAAATTATTA
* *
9110961 GGTTGGGAAATTA
1 GGTTGGGTAATTG
9110974 GGTTGGGTAATTG
1 GGTTGGGTAATTG
**
9110987 GGTTGGGTTGGGTTG
1 GGTTGGG-T-AATTG
*
9111002 GGTTGGGTAGTTG
1 GGTTGGGTAATTG
9111015 GGT
1 GGT
9111018 AGTTGGGTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
13 25 0.68
14 2 0.05
15 10 0.27
ACGTcount: A:0.12, C:0.00, G:0.51, T:0.37
Consensus pattern (13 bp):
GGTTGGGTAATTG
Found at i:9113632 original size:15 final size:15
Alignment explanation
Indices: 9113612--9113642 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
9113602 TATGGTAACT
*
9113612 AATCTTAGAAGATAG
1 AATCTTAAAAGATAG
9113627 AATCTTAAAAGATAG
1 AATCTTAAAAGATAG
9113642 A
1 A
9113643 GGGAATCATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.52, C:0.06, G:0.16, T:0.26
Consensus pattern (15 bp):
AATCTTAAAAGATAG
Found at i:9129133 original size:13 final size:13
Alignment explanation
Indices: 9129115--9129142 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
9129105 GATAGAAGTA
9129115 AGTATTTTATTAG
1 AGTATTTTATTAG
9129128 AGTATTTTATTAG
1 AGTATTTTATTAG
9129141 AG
1 AG
9129143 AAAACATCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.18, T:0.50
Consensus pattern (13 bp):
AGTATTTTATTAG
Found at i:9131939 original size:20 final size:20
Alignment explanation
Indices: 9131929--9131977 Score: 71
Period size: 20 Copynumber: 2.4 Consensus size: 20
9131919 TTTTATATTA
9131929 TTAAAAAATATATTTAATAT
1 TTAAAAAATATATTTAATAT
*
9131949 TTAAAAAATAATATTTAAAATT
1 TTAAAAAAT-ATATTTAATA-T
9131971 TTAAAAA
1 TTAAAAA
9131978 GTAATTTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 9 0.35
21 9 0.35
22 8 0.31
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
TTAAAAAATATATTTAATAT
Found at i:9131955 original size:21 final size:22
Alignment explanation
Indices: 9131915--9131982 Score: 86
Period size: 22 Copynumber: 3.1 Consensus size: 22
9131905 AAAATATTTA
*
9131915 AATATTTTATATTATTAAAAAAT
1 AATATTTAATATT-TTAAAAAAT
9131938 -ATATTTAATA-TTTAAAAAAT
1 AATATTTAATATTTTAAAAAAT
* *
9131958 AATATTTAAAATTTTAAAAAGT
1 AATATTTAATATTTTAAAAAAT
9131980 AAT
1 AAT
9131983 TTCAAAATAT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
20 9 0.22
21 10 0.25
22 21 0.52
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.44
Consensus pattern (22 bp):
AATATTTAATATTTTAAAAAAT
Found at i:9131984 original size:20 final size:21
Alignment explanation
Indices: 9131929--9131990 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
9131919 TTTTATATTA
*
9131929 TTAAAAAATATATTTAATA-T
1 TTAAAAAATATATTTAAAATT
9131949 TTAAAAAATAATATTTAAAATT
1 TTAAAAAAT-ATATTTAAAATT
*
9131971 TTAAAAAGTA-ATTTCAAAAT
1 TTAAAAAATATATTT-AAAAT
9131991 ATATATTTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.35
21 15 0.41
22 9 0.24
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (21 bp):
TTAAAAAATATATTTAAAATT
Found at i:9132000 original size:26 final size:24
Alignment explanation
Indices: 9131970--9132045 Score: 77
Period size: 23 Copynumber: 3.1 Consensus size: 24
9131960 TATTTAAAAT
9131970 TTTAAAAAGTAATTTCAAAATATATA
1 TTTAAAAA-T-ATTTCAAAATATATA
*
9131996 TTT-AAAAT-TTACAAAAATATATA
1 TTTAAAAATATTTC-AAAATATATA
*
9132019 TTAATAAAATATTTC-AAATATATA
1 TTTA-AAAATATTTCAAAATATATA
9132043 TTT
1 TTT
9132046 TAAATTTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
22 3 0.07
23 12 0.29
24 12 0.29
25 9 0.21
26 6 0.14
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (24 bp):
TTTAAAAATATTTCAAAATATATA
Found at i:9132048 original size:26 final size:25
Alignment explanation
Indices: 9131981--9132044 Score: 82
Period size: 23 Copynumber: 2.7 Consensus size: 25
9131971 TTAAAAAGTA
9131981 ATTTCAAAATATATATT--TAAAAT
1 ATTTCAAAATATATATTAATAAAAT
*
9132004 -TTACAAAAATATATATTAATAAAAT
1 ATTTC-AAAATATATATTAATAAAAT
9132029 ATTTC-AAATATATATT
1 ATTTCAAAATATATATT
9132045 TTAAATTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
22 3 0.09
23 12 0.34
24 11 0.31
25 6 0.17
26 3 0.09
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (25 bp):
ATTTCAAAATATATATTAATAAAAT
Found at i:9132114 original size:12 final size:12
Alignment explanation
Indices: 9132093--9132143 Score: 65
Period size: 12 Copynumber: 4.5 Consensus size: 12
9132083 CATAAAAGAC
9132093 AAAAAA-TAAAA
1 AAAAAAGTAAAA
9132104 AAAAAAGT---A
1 AAAAAAGTAAAA
9132113 AAAAAAGTAAAA
1 AAAAAAGTAAAA
9132125 AAAAAAGTAAAA
1 AAAAAAGTAAAA
9132137 AGAAAAA
1 A-AAAAA
9132144 AGGAAACTGA
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
9 9 0.26
11 6 0.17
12 15 0.43
13 5 0.14
ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08
Consensus pattern (12 bp):
AAAAAAGTAAAA
Found at i:9132123 original size:21 final size:20
Alignment explanation
Indices: 9132070--9132137 Score: 84
Period size: 20 Copynumber: 3.3 Consensus size: 20
9132060 TTAATAATAA
* *
9132070 TAAATAAAATAAACATAAAAG
1 TAAA-AAAATAAAAAAAAAAG
9132091 -ACAAAAAATAAAAAAAAAAG
1 TA-AAAAAATAAAAAAAAAAG
9132111 TAAAAAAAGTAAAAAAAAAAG
1 TAAAAAAA-TAAAAAAAAAAG
9132132 TAAAAA
1 TAAAAA
9132138 GAAAAAAGGA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
20 21 0.50
21 21 0.50
ACGTcount: A:0.79, C:0.03, G:0.06, T:0.12
Consensus pattern (20 bp):
TAAAAAAATAAAAAAAAAAG
Found at i:9132137 original size:9 final size:9
Alignment explanation
Indices: 9132103--9132127 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
9132093 AAAAAATAAA
9132103 AAAAAAAGT
1 AAAAAAAGT
9132112 AAAAAAAGT
1 AAAAAAAGT
9132121 AAAAAAA
1 AAAAAAA
9132128 AAAGTAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08
Consensus pattern (9 bp):
AAAAAAAGT
Found at i:9134786 original size:21 final size:22
Alignment explanation
Indices: 9134762--9134818 Score: 75
Period size: 21 Copynumber: 2.7 Consensus size: 22
9134752 CCATTTGATA
*
9134762 TAATTGATTATA-TATTATTAT
1 TAATTGATTATATTATAATTAT
9134783 TAATTGATTATATTATAATTAT
1 TAATTGATTATATTATAATTAT
*
9134805 AAATT-A-TATATTAT
1 TAATTGATTATATTAT
9134819 GAAACAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
20 8 0.24
21 13 0.39
22 12 0.36
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (22 bp):
TAATTGATTATATTATAATTAT
Found at i:9134796 original size:19 final size:21
Alignment explanation
Indices: 9134762--9134818 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 21
9134752 CCATTTGATA
*
9134762 TAATTGATTATATATTATTAT
1 TAATTGATTATATATTATAAT
9134783 TAATTGA-T-TATATTATAAT
1 TAATTGATTATATATTATAAT
**
9134802 T-ATAAATTATATATTAT
1 TAATTGATTATATATTAT
9134819 GAAACAAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 3 0.10
19 12 0.39
20 9 0.29
21 7 0.23
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (21 bp):
TAATTGATTATATATTATAAT
Found at i:9135837 original size:22 final size:24
Alignment explanation
Indices: 9135809--9135852 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
9135799 TATGGCAAGA
9135809 AATTAAG-TAGAAAAG-AAGTATG
1 AATTAAGTTAGAAAAGTAAGTATG
9135831 AATTAAGTTAGAAAAGTAAGTA
1 AATTAAGTTAGAAAAGTAAGTA
9135853 AACTTAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.35
23 8 0.40
24 5 0.25
ACGTcount: A:0.55, C:0.00, G:0.20, T:0.25
Consensus pattern (24 bp):
AATTAAGTTAGAAAAGTAAGTATG
Found at i:9136350 original size:12 final size:11
Alignment explanation
Indices: 9136335--9136378 Score: 54
Period size: 12 Copynumber: 3.9 Consensus size: 11
9136325 TTTAAATGGA
9136335 ATTGATATGAAT
1 ATTGAT-TGAAT
*
9136347 ATTGATTGGA-
1 ATTGATTGAAT
9136357 ATTGATGTGAAT
1 ATTGAT-TGAAT
9136369 ATTGATTGAA
1 ATTGATTGAA
9136379 ACAGAGAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
10 6 0.21
11 10 0.36
12 12 0.43
ACGTcount: A:0.36, C:0.00, G:0.23, T:0.41
Consensus pattern (11 bp):
ATTGATTGAAT
Found at i:9136359 original size:22 final size:22
Alignment explanation
Indices: 9136331--9136376 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
9136321 TTGATTTAAA
9136331 TGGAATTGATATGAATATTGAT
1 TGGAATTGATATGAATATTGAT
*
9136353 TGGAATTGATGTGAATATTGAT
1 TGGAATTGATATGAATATTGAT
9136375 TG
1 TG
9136377 AAACAGAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.00, G:0.26, T:0.41
Consensus pattern (22 bp):
TGGAATTGATATGAATATTGAT
Found at i:9139910 original size:29 final size:30
Alignment explanation
Indices: 9139873--9139940 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 30
9139863 AGAAAACAAC
* *
9139873 AAAAAGAAAATCTATTTTAAAAA-GAAAAA
1 AAAAAGAAAATCTAATCTAAAAATGAAAAA
*
9139902 AAAAAGAAAATCTAATCTAAAAATGGAAAA
1 AAAAAGAAAATCTAATCTAAAAATGAAAAA
*
9139932 AGAAAGAAA
1 AAAAAGAAA
9139941 GAAAGGAAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 21 0.62
30 13 0.38
ACGTcount: A:0.69, C:0.04, G:0.10, T:0.16
Consensus pattern (30 bp):
AAAAAGAAAATCTAATCTAAAAATGAAAAA
Found at i:9146251 original size:29 final size:30
Alignment explanation
Indices: 9146209--9146269 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 30
9146199 CTTAACAAGT
9146209 AAATACCTCTAAAATAATAA-AAAATTAAC
1 AAATACCTCTAAAATAATAACAAAATTAAC
* * *
9146238 AAATGCCTTTAAAATAGTAACAAAATTAAC
1 AAATACCTCTAAAATAATAACAAAATTAAC
9146268 AA
1 AA
9146270 GAAAATAAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 17 0.61
30 11 0.39
ACGTcount: A:0.59, C:0.13, G:0.03, T:0.25
Consensus pattern (30 bp):
AAATACCTCTAAAATAATAACAAAATTAAC
Found at i:9146676 original size:21 final size:20
Alignment explanation
Indices: 9146650--9146700 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
9146640 GCGCGACTCT
*
9146650 TTTTTTATATTAATATATATA
1 TTTTTTATATTAAAATAT-TA
* *
9146671 TTTTTTAAAATAAAATATTA
1 TTTTTTATATTAAAATATTA
9146691 TTTTTT-TATT
1 TTTTTTATATT
9146701 TTCGGATCAG
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
19 2 0.08
20 8 0.32
21 15 0.60
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTTTTATATTAAAATATTA
Found at i:9147535 original size:27 final size:27
Alignment explanation
Indices: 9147505--9147580 Score: 116
Period size: 27 Copynumber: 2.8 Consensus size: 27
9147495 AGTACCATTT
* *
9147505 GCGCCTACCTGTTAGGCACGACTAGTC
1 GCGCCTATCTGATAGGCACGACTAGTC
*
9147532 GCGCCTATCTGAGAGGCACGACTAGTC
1 GCGCCTATCTGATAGGCACGACTAGTC
*
9147559 GCGCCTATCTGATAGGCGCGAC
1 GCGCCTATCTGATAGGCACGAC
9147581 CCATTCTCGT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.20
Consensus pattern (27 bp):
GCGCCTATCTGATAGGCACGACTAGTC
Found at i:9147671 original size:27 final size:28
Alignment explanation
Indices: 9147636--9147707 Score: 69
Period size: 27 Copynumber: 2.6 Consensus size: 28
9147626 TTTTTATATG
*
9147636 TATATAAATTTAAATATT-TTTAATAAAA
1 TATAAAAATTTAAATATTATTTAA-AAAA
*
9147664 TA-AAAAA-TTAATATTTTATTTAAAAAA
1 TATAAAAATTTAA-ATATTATTTAAAAAA
* *
9147691 TATAAACATTTTAATAT
1 TATAAAAATTTAAATAT
9147708 AAAAAATCAC
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
26 4 0.11
27 14 0.40
28 14 0.40
29 3 0.09
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.44
Consensus pattern (28 bp):
TATAAAAATTTAAATATTATTTAAAAAA
Found at i:9147701 original size:22 final size:21
Alignment explanation
Indices: 9147663--9147714 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 21
9147653 TTTTAATAAA
*
9147663 ATAAAAAATTAATATTTT-AT
1 ATAAAAAATTAACATTTTAAT
*
9147683 TTAAAAAATATAAACATTTTAAT
1 ATAAAAAAT-T-AACATTTTAAT
9147706 ATAAAAAAT
1 ATAAAAAAT
9147715 CACGCCTGTC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 8 0.31
21 1 0.04
22 7 0.27
23 10 0.38
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (21 bp):
ATAAAAAATTAACATTTTAAT
Found at i:9149622 original size:14 final size:14
Alignment explanation
Indices: 9149603--9149631 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
9149593 TCATGCAACG
9149603 AAATACTTATGAAC
1 AAATACTTATGAAC
9149617 AAATACTTATGAAC
1 AAATACTTATGAAC
9149631 A
1 A
9149632 TGTATAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.14, G:0.07, T:0.28
Consensus pattern (14 bp):
AAATACTTATGAAC
Found at i:9150660 original size:11 final size:11
Alignment explanation
Indices: 9150644--9150671 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
9150634 AATTGGTGGA
9150644 AGGTGGTGCAT
1 AGGTGGTGCAT
9150655 AGGTGGTGCAT
1 AGGTGGTGCAT
9150666 AGGTGG
1 AGGTGG
9150672 CACCACCTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.18, C:0.07, G:0.50, T:0.25
Consensus pattern (11 bp):
AGGTGGTGCAT
Found at i:9150776 original size:27 final size:27
Alignment explanation
Indices: 9150719--9150786 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 27
9150709 TATTTTATGT
* **
9150719 AGTGGAGGGTGTCAGATAGGTAGCATT
1 AGTGGAGGGTGTCAGATAGGCAGCACC
* * *
9150746 AGTGGAGGGTGTCTGGTAGGCGGCACC
1 AGTGGAGGGTGTCAGATAGGCAGCACC
*
9150773 AGTGGAGAGTGTCA
1 AGTGGAGGGTGTCA
9150787 TCTAACACTC
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.22, C:0.12, G:0.44, T:0.22
Consensus pattern (27 bp):
AGTGGAGGGTGTCAGATAGGCAGCACC
Found at i:9151316 original size:84 final size:83
Alignment explanation
Indices: 9151175--9151344 Score: 313
Period size: 84 Copynumber: 2.0 Consensus size: 83
9151165 CGCCCATGTG
9151175 ACTTGGCCGTGTGAAAACATGATTTTTGTCCATTTTTAAGCTATTTTCACATGTTAAACACATTT
1 ACTTGGCCGTGTGAAAACATGATTTTTGTCCATTTTTAAGCTATTTTCACATGTTAAACACATTT
9151240 AATTCACGCTCAAGCATTT
66 AATTCACG-TCAAGCATTT
* *
9151259 ACTTGGCCGTGTGAAAACATGATTTTTGTCTATTTTTAAGCTATTTTCATATGTTAAACACATTT
1 ACTTGGCCGTGTGAAAACATGATTTTTGTCCATTTTTAAGCTATTTTCACATGTTAAACACATTT
9151324 AATTCACGTCAAGCATTT
66 AATTCACGTCAAGCATTT
9151342 ACT
1 ACT
9151345 AATAGTTCTT
Statistics
Matches: 84, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
83 13 0.15
84 71 0.85
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.41
Consensus pattern (83 bp):
ACTTGGCCGTGTGAAAACATGATTTTTGTCCATTTTTAAGCTATTTTCACATGTTAAACACATTT
AATTCACGTCAAGCATTT
Found at i:9153000 original size:17 final size:20
Alignment explanation
Indices: 9152978--9153018 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
9152968 AAATTCTAAT
9152978 TTTCCC-TTTT-CTT-TTTC
1 TTTCCCTTTTTCCTTCTTTC
9152995 TTTCCCTTTTTCCTTCTTTC
1 TTTCCCTTTTTCCTTCTTTC
9153015 TTTC
1 TTTC
9153019 TCTGCTAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 6 0.29
18 4 0.19
19 3 0.14
20 8 0.38
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTCCCTTTTTCCTTCTTTC
Found at i:9156451 original size:14 final size:14
Alignment explanation
Indices: 9156432--9156465 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
9156422 TAATATATTT
9156432 AATTTATATAACAA
1 AATTTATATAACAA
*
9156446 AATTTATATTACAA
1 AATTTATATAACAA
*
9156460 AGTTTA
1 AATTTA
9156466 ATCCAATTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41
Consensus pattern (14 bp):
AATTTATATAACAA
Found at i:9156471 original size:64 final size:64
Alignment explanation
Indices: 9156369--9156588 Score: 305
Period size: 64 Copynumber: 3.4 Consensus size: 64
9156359 GAGCTTATGT
* * * * *
9156369 ATTTATATAAAAAAATTTATATTATAAAGTATGTTCCAATTAGGTTATGATTGTAATATATTTA
1 ATTTATATAACAAAATTTATATTACAAAGTTTGTTCCAATTAGATTATGGTTGTAATATATTTA
** *
9156433 ATTTATATAACAAAATTTATATTACAAAGTTTAATCCAATTAGATTATGGTTGTAATTTATTTA
1 ATTTATATAACAAAATTTATATTACAAAGTTTGTTCCAATTAGATTATGGTTGTAATATATTTA
* * * * * *
9156497 ATTTTTTTAACATAATTTATATTAAAAAGTTTGTTCCAATTAGATTATGGCTGTAATGTATTTA
1 ATTTATATAACAAAATTTATATTACAAAGTTTGTTCCAATTAGATTATGGTTGTAATATATTTA
*
9156561 ATTTATATAACATAATTTATATTACAAA
1 ATTTATATAACAAAATTTATATTACAAA
9156589 ACTAAGTTTA
Statistics
Matches: 137, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
64 137 1.00
ACGTcount: A:0.40, C:0.05, G:0.08, T:0.46
Consensus pattern (64 bp):
ATTTATATAACAAAATTTATATTACAAAGTTTGTTCCAATTAGATTATGGTTGTAATATATTTA
Found at i:9160873 original size:33 final size:33
Alignment explanation
Indices: 9160802--9160884 Score: 96
Period size: 33 Copynumber: 2.5 Consensus size: 33
9160792 ATCTTTTGGT
*
9160802 CGTATCCACCACAATACAGTACTCCTCCAAGCC
1 CGTATCCATCACAATACAGTACTCCTCCAAGCC
* * *
9160835 CGTATCCATCACAGTACAGTACTCTTCTC-GGCC
1 CGTATCCATCACAATACAGTACTCCTC-CAAGCC
* *
9160868 TGTATCCATCGCAATAC
1 CGTATCCATCACAATAC
9160885 TCTACTTATC
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
33 41 0.98
34 1 0.02
ACGTcount: A:0.27, C:0.37, G:0.12, T:0.24
Consensus pattern (33 bp):
CGTATCCATCACAATACAGTACTCCTCCAAGCC
Found at i:9161360 original size:64 final size:63
Alignment explanation
Indices: 9161291--9161510 Score: 284
Period size: 64 Copynumber: 3.5 Consensus size: 63
9161281 ACAAACTTAG
* *
9161291 TTTTGTAATACAAATTATGTTATATAAATTAAATACATTATAACCATAATCTAATTAGAACAAA
1 TTTTGTAATATAAATTATGTTATATAAATTAAATACATTACAACCATAATCTAATT-GAACAAA
* * *
9161355 TTTTGTAATATAAATTAGGTTATATAAATTAAATACATTACAACTATAATCCAATTGAAACAAA
1 TTTTGTAATATAAATTATGTTATATAAATTAAATACATTACAACCATAATCTAATTG-AACAAA
* * * * **
9161419 CTTTGTAATATAAATTTTGTTATATAAATTAAATA-ATTACAAACATAATTTAATTGGAATGAA
1 TTTTGTAATATAAATTATGTTATATAAATTAAATACATTACAACCATAATCTAATT-GAACAAA
*
9161482 TTTTGTAATATATATT-T-TTATATAAATTA
1 TTTTGTAATATAAATTATGTTATATAAATTA
9161511 CATAAGCTTA
Statistics
Matches: 138, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
61 12 0.09
62 1 0.01
63 35 0.25
64 90 0.65
ACGTcount: A:0.46, C:0.07, G:0.06, T:0.41
Consensus pattern (63 bp):
TTTTGTAATATAAATTATGTTATATAAATTAAATACATTACAACCATAATCTAATTGAACAAA
Found at i:9165125 original size:22 final size:21
Alignment explanation
Indices: 9165077--9165127 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 21
9165067 GATTTATTCA
9165077 ATTTATCTTTCAATTTTAGTTT
1 ATTTAT-TTTCAATTTTAGTTT
*
9165099 TTTTATTTTCAATTGTTTA-TTT
1 ATTTATTTTCAA-T-TTTAGTTT
9165121 ATTTATT
1 ATTTATT
9165128 GTTTTGGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 6 0.24
22 15 0.60
23 4 0.16
ACGTcount: A:0.22, C:0.06, G:0.04, T:0.69
Consensus pattern (21 bp):
ATTTATTTTCAATTTTAGTTT
Found at i:9169266 original size:29 final size:27
Alignment explanation
Indices: 9169220--9169273 Score: 63
Period size: 29 Copynumber: 1.9 Consensus size: 27
9169210 TAAAATGACT
*
9169220 ATTTTGCCCTTAAACTTGCATAAATTATG
1 ATTTTACCCTTAAACTTG-A-AAATTATG
**
9169249 ATTTTACCCTTAGGCTTGAAAATTA
1 ATTTTACCCTTAAACTTGAAAATTA
9169274 ATTTTTATCG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 6 0.27
28 1 0.05
29 15 0.68
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.41
Consensus pattern (27 bp):
ATTTTACCCTTAAACTTGAAAATTATG
Found at i:9173506 original size:12 final size:12
Alignment explanation
Indices: 9173485--9173532 Score: 87
Period size: 12 Copynumber: 4.0 Consensus size: 12
9173475 CCCTTTCTAG
9173485 CAACTATTAAAA
1 CAACTATTAAAA
*
9173497 CAATTATTAAAA
1 CAACTATTAAAA
9173509 CAACTATTAAAA
1 CAACTATTAAAA
9173521 CAACTATTAAAA
1 CAACTATTAAAA
9173533 TTTTTTAGAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (12 bp):
CAACTATTAAAA
Found at i:9176986 original size:72 final size:72
Alignment explanation
Indices: 9176869--9177012 Score: 288
Period size: 72 Copynumber: 2.0 Consensus size: 72
9176859 TTATAGACAT
9176869 GAATGTATTTTATTCATTTTAGTCTCTACAAGCCTTAATATCCAAAATGATTGTAACTTACGATT
1 GAATGTATTTTATTCATTTTAGTCTCTACAAGCCTTAATATCCAAAATGATTGTAACTTACGATT
9176934 TACCCAA
66 TACCCAA
9176941 GAATGTATTTTATTCATTTTAGTCTCTACAAGCCTTAATATCCAAAATGATTGTAACTTACGATT
1 GAATGTATTTTATTCATTTTAGTCTCTACAAGCCTTAATATCCAAAATGATTGTAACTTACGATT
9177006 TACCCAA
66 TACCCAA
9177013 TCGATTTTAA
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 72 1.00
ACGTcount: A:0.33, C:0.18, G:0.10, T:0.39
Consensus pattern (72 bp):
GAATGTATTTTATTCATTTTAGTCTCTACAAGCCTTAATATCCAAAATGATTGTAACTTACGATT
TACCCAA
Found at i:9181024 original size:30 final size:30
Alignment explanation
Indices: 9180984--9181040 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
9180974 TCACAGTTAA
*
9180984 TTACATGGTCTAGCCCCACGGCCGTATTAG
1 TTACACGGTCTAGCCCCACGGCCGTATTAG
* *
9181014 TTACACGGTCTGGCCCTACGGCCGTAT
1 TTACACGGTCTAGCCCCACGGCCGTAT
9181041 GACCTCTGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.18, C:0.32, G:0.25, T:0.26
Consensus pattern (30 bp):
TTACACGGTCTAGCCCCACGGCCGTATTAG
Found at i:9184901 original size:42 final size:42
Alignment explanation
Indices: 9184771--9184932 Score: 141
Period size: 42 Copynumber: 3.8 Consensus size: 42
9184761 TAAGATGCCA
* * * *
9184771 ATGCCATATCCCAGATATGGTCTTACATGACATCACATATCG
1 ATGCCATATCCCAGACATGGTCTTACACGAAATCATATATCG
* * * *
9184813 ATGCCGATAGCCCAG-CTATGGCCTTACAC-AATGTC-TCATATTG
1 ATGCC-ATATCCCAGAC-ATGGTCTTACACGAA-ATCAT-ATATCG
* *
9184856 ATGCCATGTCCTAGACATGGTCTTACACGAAATCATATATCG
1 ATGCCATATCCCAGACATGGTCTTACACGAAATCATATATCG
* ** *
9184898 ATGCCATATCCCAAATGTGGTCTTACATGAAATCA
1 ATGCCATATCCCAGACATGGTCTTACACGAAATCA
9184933 CACATAACCC
Statistics
Matches: 93, Mismatches: 20, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
42 59 0.63
43 34 0.37
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.28
Consensus pattern (42 bp):
ATGCCATATCCCAGACATGGTCTTACACGAAATCATATATCG
Found at i:9198646 original size:9 final size:9
Alignment explanation
Indices: 9198632--9198656 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
9198622 GTTTAGGGAC
9198632 TAAATTGAA
1 TAAATTGAA
9198641 TAAATTGAA
1 TAAATTGAA
9198650 TAAATTG
1 TAAATTG
9198657 CAAATTATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (9 bp):
TAAATTGAA
Found at i:9205385 original size:31 final size:31
Alignment explanation
Indices: 9205336--9205412 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 31
9205326 GCATGTGGGC
* * * *
9205336 CACACGAGCGTATAGGCCCACACGAGTATGA
1 CACACGAGCGTGTGGGCCCACACGAGCATAA
* *
9205367 CACACGGGCGTGTGGGCCCACATGAGCATAA
1 CACACGAGCGTGTGGGCCCACACGAGCATAA
9205398 CACACGAGCGTGTGG
1 CACACGAGCGTGTGG
9205413 ATTCTTGGGC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.27, C:0.29, G:0.31, T:0.13
Consensus pattern (31 bp):
CACACGAGCGTGTGGGCCCACACGAGCATAA
Found at i:9231049 original size:39 final size:39
Alignment explanation
Indices: 9230992--9231069 Score: 120
Period size: 39 Copynumber: 2.0 Consensus size: 39
9230982 GATGAAGAGA
* * *
9230992 CGAGAAGATAGGATTAAATTGCAAATTTTGAAAATTATG
1 CGAGAAGATAAGACTAAATTGCAAATTTTGAAAACTATG
*
9231031 CGAGAAGATAAGACTAAATTGTAAATTTTGAAAACTATG
1 CGAGAAGATAAGACTAAATTGCAAATTTTGAAAACTATG
9231070 TGATTGAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.45, C:0.06, G:0.19, T:0.29
Consensus pattern (39 bp):
CGAGAAGATAAGACTAAATTGCAAATTTTGAAAACTATG
Found at i:9231513 original size:23 final size:24
Alignment explanation
Indices: 9231467--9231515 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
9231457 TATATGATTT
* *
9231467 GAATATGAATTGAGATTGAAATGA
1 GAATAGGAATTGAAATTGAAATGA
*
9231491 GAATAGGAA-TGAAATTGATATGA
1 GAATAGGAATTGAAATTGAAATGA
9231514 GA
1 GA
9231516 CAGAAAATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.47, C:0.00, G:0.27, T:0.27
Consensus pattern (24 bp):
GAATAGGAATTGAAATTGAAATGA
Found at i:9234219 original size:13 final size:11
Alignment explanation
Indices: 9234191--9234233 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
9234181 AGTTAAATAT
9234191 TATTTTATTAA
1 TATTTTATTAA
9234202 TATTTTACTTAGA
1 TATTTTA-TTA-A
*
9234215 TA-TTTATTAT
1 TATTTTATTAA
9234225 TATTTTATT
1 TATTTTATT
9234234 TAGAAAATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 2 0.07
11 16 0.57
12 7 0.25
13 3 0.11
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:9234220 original size:23 final size:23
Alignment explanation
Indices: 9234194--9234237 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
9234184 TAAATATTAT
9234194 TTTATTAATATTTTACTTAGATA
1 TTTATTAATATTTTACTTAGATA
* *
9234217 TTTATTATTATTTTATTTAGA
1 TTTATTAATATTTTACTTAGA
9234238 AAATGGTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (23 bp):
TTTATTAATATTTTACTTAGATA
Found at i:9236709 original size:7 final size:8
Alignment explanation
Indices: 9236684--9236709 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
9236674 TTTTAATTTG
9236684 TTTCAATT
1 TTTCAATT
9236692 TTTCAATT
1 TTTCAATT
9236700 TTTCAATT
1 TTTCAATT
9236708 TT
1 TT
9236710 AATATAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.12, G:0.00, T:0.65
Consensus pattern (8 bp):
TTTCAATT
Found at i:9236802 original size:19 final size:20
Alignment explanation
Indices: 9236778--9236816 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
9236768 TCCCATTATT
9236778 TATTTATTTTT-TGTTTTAA
1 TATTTATTTTTATGTTTTAA
9236797 TATTTATTTTTATGTTTTAA
1 TATTTATTTTTATGTTTTAA
9236817 ATGTATTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (20 bp):
TATTTATTTTTATGTTTTAA
Found at i:9236834 original size:25 final size:23
Alignment explanation
Indices: 9236778--9236842 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 23
9236768 TCCCATTATT
*
9236778 TATTTATTTTT-TGTTTT-AA--
1 TATTTATTTTTATATTTTAAATG
*
9236797 TATTTATTTTTATGTTTTAAATG
1 TATTTATTTTTATATTTTAAATG
9236820 TATTTGATTTATTATATTTTAAA
1 TATTT-ATTT-TTATATTTTAAA
9236843 GTTTTTTATT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
19 11 0.28
20 6 0.15
21 2 0.05
23 5 0.13
24 4 0.10
25 11 0.28
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (23 bp):
TATTTATTTTTATATTTTAAATG
Found at i:9239818 original size:9 final size:9
Alignment explanation
Indices: 9239801--9239837 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
9239791 TGAGTTTTCG
9239801 AATTCGAAT
1 AATTCGAAT
*
9239810 AACTCGAAT
1 AATTCGAAT
9239819 AATTCGAAT
1 AATTCGAAT
9239828 AATTCGAAT
1 AATTCGAAT
9239837 A
1 A
9239838 TTAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:9240248 original size:20 final size:21
Alignment explanation
Indices: 9240214--9240253 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
9240204 CAAACTTTTA
9240214 TCCCCCAAAACTTTTTACTTT
1 TCCCCCAAAACTTTTTACTTT
*
9240235 TCCCCCTAAA-TTTTTACTT
1 TCCCCCAAAACTTTTTACTT
9240254 CTCACCTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.23, C:0.33, G:0.00, T:0.45
Consensus pattern (21 bp):
TCCCCCAAAACTTTTTACTTT
Found at i:9241370 original size:13 final size:13
Alignment explanation
Indices: 9241354--9241378 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9241344 TAAGTACCCA
9241354 ACCCAACCCAATT
1 ACCCAACCCAATT
9241367 ACCCAACCCAAT
1 ACCCAACCCAAT
9241379 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:9241416 original size:5 final size:6
Alignment explanation
Indices: 9241380--9241437 Score: 55
Period size: 6 Copynumber: 9.2 Consensus size: 6
9241370 CAACCCAATC
* *
9241380 ATAAAA ATTAAAA AT-AAT TTAATAA ATAAAA ATAAAA ATTTAAAA ATAAAA
1 ATAAAA A-TAAAA ATAAAA ATAA-AA ATAAAA ATAAAA A--TAAAA ATAAAA
9241431 ATAAAA A
1 ATAAAA A
9241438 AACATAATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
5 3 0.07
6 24 0.56
7 10 0.23
8 6 0.14
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (6 bp):
ATAAAA
Found at i:9241423 original size:14 final size:14
Alignment explanation
Indices: 9241406--9241432 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9241396 ATTTAATAAA
9241406 TAAAAATAAAAATT
1 TAAAAATAAAAATT
9241420 TAAAAATAAAAAT
1 TAAAAATAAAAAT
9241433 AAAAAAACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
TAAAAATAAAAATT
Found at i:9241428 original size:20 final size:21
Alignment explanation
Indices: 9241395--9241437 Score: 79
Period size: 20 Copynumber: 2.1 Consensus size: 21
9241385 AATTAAAAAT
9241395 AATTTAATAAATAAAAATAAA
1 AATTTAATAAATAAAAATAAA
9241416 AATTTAA-AAATAAAAATAAA
1 AATTTAATAAATAAAAATAAA
9241436 AA
1 AA
9241438 AACATAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (21 bp):
AATTTAATAAATAAAAATAAA
Found at i:9241438 original size:21 final size:22
Alignment explanation
Indices: 9241380--9241438 Score: 77
Period size: 21 Copynumber: 2.6 Consensus size: 22
9241370 CAACCCAATC
9241380 ATAAAAATTAAAAATAATTTAATAA
1 ATAAAAA-T-AAAA-AATTTAATAA
9241405 ATAAAAAT-AAAAATTTAA-AA
1 ATAAAAATAAAAAATTTAATAA
9241425 ATAAAAATAAAAAA
1 ATAAAAATAAAAAA
9241439 ACATAATTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
20 10 0.30
21 12 0.36
22 3 0.09
24 1 0.03
25 7 0.21
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (22 bp):
ATAAAAATAAAAAATTTAATAA
Found at i:9241477 original size:9 final size:9
Alignment explanation
Indices: 9241465--9241514 Score: 55
Period size: 9 Copynumber: 5.6 Consensus size: 9
9241455 ATAATTCGAT
*
9241465 TAATTTGGG
1 TAATTCGGG
9241474 TAATTCGGG
1 TAATTCGGG
*
9241483 TAATTCGGT
1 TAATTCGGG
**
9241492 TAATTCGAT
1 TAATTCGGG
*
9241501 TAATTCGGT
1 TAATTCGGG
9241510 TAATT
1 TAATT
9241515 TTATACTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 37 1.00
ACGTcount: A:0.26, C:0.08, G:0.22, T:0.44
Consensus pattern (9 bp):
TAATTCGGG
Found at i:9241479 original size:18 final size:18
Alignment explanation
Indices: 9241456--9241514 Score: 73
Period size: 18 Copynumber: 3.3 Consensus size: 18
9241446 TTTATACAAA
*
9241456 TAATTCGATTAATTTGGG
1 TAATTCGATTAATTCGGG
** *
9241474 TAATTCGGGTAATTCGGT
1 TAATTCGATTAATTCGGG
*
9241492 TAATTCGATTAATTCGGT
1 TAATTCGATTAATTCGGG
9241510 TAATT
1 TAATT
9241515 TTATACTTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.27, C:0.08, G:0.20, T:0.44
Consensus pattern (18 bp):
TAATTCGATTAATTCGGG
Found at i:9241494 original size:27 final size:27
Alignment explanation
Indices: 9241456--9241514 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
9241446 TTTATACAAA
* *
9241456 TAATTCGATTAATTTGGGTAATTCGGG
1 TAATTCGATTAATTCGAGTAATTCGGG
* * *
9241483 TAATTCGGTTAATTCGATTAATTCGGT
1 TAATTCGATTAATTCGAGTAATTCGGG
9241510 TAATT
1 TAATT
9241515 TTATACTTAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.27, C:0.08, G:0.20, T:0.44
Consensus pattern (27 bp):
TAATTCGATTAATTCGAGTAATTCGGG
Found at i:9252322 original size:21 final size:21
Alignment explanation
Indices: 9252296--9252337 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
9252286 CCTATGTATG
9252296 GATATAATTCATGTTAGATAA
1 GATATAATTCATGTTAGATAA
9252317 GATATAATTCATGTTAGATAA
1 GATATAATTCATGTTAGATAA
9252338 TATAACACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.05, G:0.14, T:0.38
Consensus pattern (21 bp):
GATATAATTCATGTTAGATAA
Found at i:9252869 original size:21 final size:21
Alignment explanation
Indices: 9252845--9252886 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
9252835 GAGAATTAAA
9252845 AAGGAGAACTAAAGTGAATAT
1 AAGGAGAACTAAAGTGAATAT
9252866 AAGGAGAACTAAAGTGAATAT
1 AAGGAGAACTAAAGTGAATAT
9252887 TGAACCTAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.52, C:0.05, G:0.24, T:0.19
Consensus pattern (21 bp):
AAGGAGAACTAAAGTGAATAT
Found at i:9254052 original size:23 final size:23
Alignment explanation
Indices: 9254019--9254066 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
9254009 TTATTCATGC
*
9254019 ACCAACCAATGCTTAATGTTTTG
1 ACCAACCAATGCATAATGTTTTG
*
9254042 ACCAACGAATGCATAATGTTTTG
1 ACCAACCAATGCATAATGTTTTG
9254065 AC
1 AC
9254067 TGGTGCAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (23 bp):
ACCAACCAATGCATAATGTTTTG
Found at i:9261576 original size:17 final size:16
Alignment explanation
Indices: 9261549--9261589 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 16
9261539 AGAGATTTAT
9261549 TTTTATATAAATTAATTCA
1 TTTTATA-AAA-TAATT-A
9261568 TTTTATAAAATAATTA
1 TTTTATAAAATAATTA
9261584 TTTTAT
1 TTTTAT
9261590 TTTTAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.32
17 5 0.23
18 3 0.14
19 7 0.32
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (16 bp):
TTTTATAAAATAATTA
Found at i:9261591 original size:21 final size:20
Alignment explanation
Indices: 9261558--9261597 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
9261548 TTTTTATATA
9261558 AATTAATTCATTTTATAAAAT
1 AATTAATTCATTTT-TAAAAT
* *
9261579 AATTATTTTATTTTTAAAA
1 AATTAATTCATTTTTAAAA
9261598 AAAAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (20 bp):
AATTAATTCATTTTTAAAAT
Found at i:9263464 original size:27 final size:27
Alignment explanation
Indices: 9263412--9263464 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
9263402 TTCGACTTTT
* *
9263412 AAATTGAGTAAATTAATCCCTCTCAAA
1 AAATTGAGTAAATTAATCCATATCAAA
*
9263439 AAATTAGAGTAATTTAAT-CATATCAA
1 AAATT-GAGTAAATTAATCCATATCAA
9263465 TTTTGAAAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 11 0.50
28 11 0.50
ACGTcount: A:0.47, C:0.13, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTGAGTAAATTAATCCATATCAAA
Found at i:9270016 original size:40 final size:40
Alignment explanation
Indices: 9269969--9270063 Score: 122
Period size: 40 Copynumber: 2.4 Consensus size: 40
9269959 AAAGAATCAT
* *
9269969 TAAAATTTACTAAAA-TT-TTAGAAAAATTAATTAAAAACCA
1 TAAAATTTA-TAAAACTTCTAAAAAAAATT-ATTAAAAACCA
9270009 TAAAATTTATAAAACTTCTAAAAAAAATTATTAAAAACCA
1 TAAAATTTATAAAACTTCTAAAAAAAATTATTAAAAACCA
*
9270049 TAAAAATTATTAAAA
1 TAAAATTTA-TAAAA
9270064 AATCATTTGT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
39 5 0.10
40 30 0.61
41 14 0.29
ACGTcount: A:0.60, C:0.07, G:0.01, T:0.32
Consensus pattern (40 bp):
TAAAATTTATAAAACTTCTAAAAAAAATTATTAAAAACCA
Found at i:9270055 original size:19 final size:19
Alignment explanation
Indices: 9269990--9270064 Score: 73
Period size: 19 Copynumber: 3.8 Consensus size: 19
9269980 AAAATTTTAG
9269990 AAAAATTAATTAAAAACCAT
1 AAAAATT-ATTAAAAACCAT
* *
9270010 AAAATTTA-T-AAAACTTCTAAA
1 AAAAATTATTAAAAAC--C--AT
9270031 AAAAATTATTAAAAACCAT
1 AAAAATTATTAAAAACCAT
9270050 AAAAATTATTAAAAA
1 AAAAATTATTAAAAA
9270065 ATCATTTGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
17 5 0.11
18 1 0.02
19 18 0.40
20 6 0.13
21 9 0.20
22 1 0.02
23 5 0.11
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (19 bp):
AAAAATTATTAAAAACCAT
Found at i:9270095 original size:24 final size:23
Alignment explanation
Indices: 9270051--9270095 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
9270041 AAAAACCATA
*
9270051 AAAATTATTAAAAAATCATTTGT
1 AAAATTATTAAAAAATAATTTGT
* *
9270074 AAAATATATTAGAAATTAATTT
1 AAAAT-TATTAAAAAATAATTT
9270096 AAAACCATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 5 0.28
24 13 0.72
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.40
Consensus pattern (23 bp):
AAAATTATTAAAAAATAATTTGT
Found at i:9270372 original size:20 final size:21
Alignment explanation
Indices: 9270349--9270387 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
9270339 TAATTAATTC
9270349 ATAA-TTTTTTATATTTTTGT
1 ATAACTTTTTTATATTTTTGT
*
9270369 ATAACTTTTTTATGTTTTT
1 ATAACTTTTTTATATTTTT
9270388 ATAATTTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (21 bp):
ATAACTTTTTTATATTTTTGT
Found at i:9272093 original size:29 final size:29
Alignment explanation
Indices: 9272052--9272115 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 29
9272042 AACTTTTTAG
**
9272052 ATTTAGTTTTTCTA-TTTCT-ATTTCTAAGA
1 ATTTAGTCATTCTACTTTCTGATTTC-AA-A
9272081 ATTTAGTCATTCTACTTTTCTGATTTCAAA
1 ATTTAGTCATTCTAC-TTTCTGATTTCAAA
9272111 ATTTA
1 ATTTA
9272116 AATTTAACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
29 12 0.40
30 6 0.20
31 7 0.23
32 5 0.17
ACGTcount: A:0.27, C:0.12, G:0.06, T:0.55
Consensus pattern (29 bp):
ATTTAGTCATTCTACTTTCTGATTTCAAA
Found at i:9274156 original size:19 final size:19
Alignment explanation
Indices: 9274128--9274167 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
9274118 AAACAATAGG
*
9274128 ACACACTGTAACGCCCTTT
1 ACACACTGTAACGCCCCTT
*
9274147 ACACATTGTAACGCCCCTT
1 ACACACTGTAACGCCCCTT
9274166 AC
1 AC
9274168 CAGTATTCGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.38, G:0.10, T:0.25
Consensus pattern (19 bp):
ACACACTGTAACGCCCCTT
Found at i:9279928 original size:22 final size:22
Alignment explanation
Indices: 9279900--9280023 Score: 74
Period size: 22 Copynumber: 5.4 Consensus size: 22
9279890 CTTACACATA
*
9279900 TATCACATTAACCATTCGGCCT
1 TATCACATTAGCCATTCGGCCT
* * *
9279922 TATCACATGTAGGCACTTTC-ACAT
1 TATCACAT-TA-GC-CATTCGGCCT
*
9279946 TCATCACATTGGCCATTCGGCCT
1 T-ATCACATTAGCCATTCGGCCT
* *
9279969 TATCACATATA-CACACTTTC-ACAT
1 TATCACAT-TAGC-CA--TTCGGCCT
*
9279993 TCATCACATTGGCCATTCGGCCT
1 T-ATCACATTAGCCATTCGGCCT
9280016 TATCACAT
1 TATCACAT
9280024 ATACACACTT
Statistics
Matches: 76, Mismatches: 14, Indels: 24
0.67 0.12 0.21
Matches are distributed among these distances:
22 30 0.39
23 13 0.17
24 11 0.14
25 22 0.29
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.32
Consensus pattern (22 bp):
TATCACATTAGCCATTCGGCCT
Found at i:9279955 original size:47 final size:47
Alignment explanation
Indices: 9279867--9280058 Score: 282
Period size: 47 Copynumber: 4.1 Consensus size: 47
9279857 CACAATTGAT
* * **
9279867 CATTCGGCCTTATCACATAT--TCACTTACACATAT-ATCACATTAAC
1 CATTCGGCCTTATCACATATACACACTTTCACAT-TCATCACATTGGC
* **
9279912 CATTCGGCCTTATCACATGTAGGCACTTTCACATTCATCACATTGGC
1 CATTCGGCCTTATCACATATACACACTTTCACATTCATCACATTGGC
9279959 CATTCGGCCTTATCACATATACACACTTTCACATTCATCACATTGGC
1 CATTCGGCCTTATCACATATACACACTTTCACATTCATCACATTGGC
9280006 CATTCGGCCTTATCACATATACACACTTTCACATTCATCACATTGGC
1 CATTCGGCCTTATCACATATACACACTTTCACATTCATCACATTGGC
*
9280053 TATTCG
1 CATTCG
9280059 ATCTTAAGCT
Statistics
Matches: 135, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
45 19 0.14
46 1 0.01
47 115 0.85
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CATTCGGCCTTATCACATATACACACTTTCACATTCATCACATTGGC
Found at i:9281571 original size:51 final size:51
Alignment explanation
Indices: 9281503--9281609 Score: 187
Period size: 51 Copynumber: 2.1 Consensus size: 51
9281493 ATCACATTTA
*
9281503 TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
1 TCACTTGTCACTGATCAGATAAGTGCAGCTAAAGCTACCACTTATCACTTG
* *
9281554 TCACTTGTCACTGATCAGATAAGTGCAGCTGAGGCTACCACTTATCACTTG
1 TCACTTGTCACTGATCAGATAAGTGCAGCTAAAGCTACCACTTATCACTTG
9281605 TCACT
1 TCACT
9281610 GATTAGAAGT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (51 bp):
TCACTTGTCACTGATCAGATAAGTGCAGCTAAAGCTACCACTTATCACTTG
Found at i:9282692 original size:30 final size:30
Alignment explanation
Indices: 9282658--9282714 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
9282648 CGATTATGTG
9282658 ATAGCCTGTGTCTCAAGTTGTGTGCTCCAT
1 ATAGCCTGTGTCTCAAGTTGTGTGCTCCAT
9282688 ATAGCCTGTGTCTCAAGTTGTGTGCTC
1 ATAGCCTGTGTCTCAAGTTGTGTGCTC
9282715 TATAATTAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.16, C:0.23, G:0.25, T:0.37
Consensus pattern (30 bp):
ATAGCCTGTGTCTCAAGTTGTGTGCTCCAT
Found at i:9285580 original size:18 final size:18
Alignment explanation
Indices: 9285530--9285590 Score: 74
Period size: 19 Copynumber: 3.4 Consensus size: 18
9285520 TGGTATATAG
9285530 ATTTCTTTAAA-AATATT-T
1 ATTT-TTTAAATAAT-TTAT
9285548 ATTTTTTAAATTAATTTAT
1 ATTTTTTAAA-TAATTTAT
9285567 ATTTTTTAAATAATTTA-
1 ATTTTTTAAATAATTTAT
9285584 ATTTTTT
1 ATTTTTT
9285591 TTTAAATTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
17 13 0.32
18 13 0.32
19 14 0.35
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTTTTTAAATAATTTAT
Found at i:9285591 original size:19 final size:19
Alignment explanation
Indices: 9285546--9285597 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
9285536 TTAAAAATAT
9285546 TTATTTTTTAAATTAATTTA
1 TTATTTTTTAAA-TAATTTA
9285566 -TATTTTTTAAATAATTTAA
1 TTATTTTTTAAATAATTT-A
*
9285585 TTTTTTTTTAAAT
1 TTATTTTTTAAAT
9285598 TTTGTTTACC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 6 0.21
19 12 0.41
20 11 0.38
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (19 bp):
TTATTTTTTAAATAATTTA
Found at i:9287800 original size:14 final size:14
Alignment explanation
Indices: 9287781--9287808 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
9287771 AAAACTAACA
9287781 TTGTTTGATCCAAT
1 TTGTTTGATCCAAT
9287795 TTGTTTGATCCAAT
1 TTGTTTGATCCAAT
9287809 CTCTTTTCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.14, T:0.50
Consensus pattern (14 bp):
TTGTTTGATCCAAT
Found at i:9289347 original size:7 final size:7
Alignment explanation
Indices: 9289335--9289361 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
9289325 CAACCCTCGT
9289335 CTCTTCC
1 CTCTTCC
9289342 CTCTTCC
1 CTCTTCC
9289349 CTCTTCC
1 CTCTTCC
9289356 CTCTTC
1 CTCTTC
9289362 TATTTTTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (7 bp):
CTCTTCC
Found at i:9300353 original size:16 final size:17
Alignment explanation
Indices: 9300327--9300360 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
9300317 TTCAATACAT
9300327 ATTCATCATTCAACTCA
1 ATTCATCATTCAACTCA
*
9300344 ATTC-TCATTCAATTCA
1 ATTCATCATTCAACTCA
9300360 A
1 A
9300361 CAATAACACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.35, C:0.26, G:0.00, T:0.38
Consensus pattern (17 bp):
ATTCATCATTCAACTCA
Found at i:9301275 original size:30 final size:30
Alignment explanation
Indices: 9301241--9301299 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
9301231 CTTAACAAGA
*
9301241 AAATACCTCTAAAATAATAATAAAATTAAC
1 AAATACCTCTAAAATAATAACAAAATTAAC
*
9301271 AAATACCTTTAAAATAATAACAAAATTAA
1 AAATACCTCTAAAATAATAACAAAATTAA
9301300 TAATAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.61, C:0.12, G:0.00, T:0.27
Consensus pattern (30 bp):
AAATACCTCTAAAATAATAACAAAATTAAC
Done.