Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 283 of 290
Found at i:90516925 original size:16 final size:16
Alignment explanation
Indices: 90516906--90516936 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
90516896 TTGAAAAAGT
90516906 TTTCAAATATATGTGG
1 TTTCAAATATATGTGG
*
90516922 TTTCAAATTTATGTG
1 TTTCAAATATATGTG
90516937 CTCTAACATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.06, G:0.16, T:0.48
Consensus pattern (16 bp):
TTTCAAATATATGTGG
Found at i:90522487 original size:27 final size:27
Alignment explanation
Indices: 90522445--90522496 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
90522435 AATGTAAAAA
*
90522445 AGGGGTTGCTATGTGCTGATTCCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCCG
90522472 AGGGGTTGCTAAGTGCTGATTCCCC
1 AGGGGTTGCTAAGTGCTGATTCCCC
90522497 GATTCATTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.13, C:0.25, G:0.33, T:0.29
Consensus pattern (27 bp):
AGGGGTTGCTAAGTGCTGATTCCCCCG
Found at i:90522550 original size:105 final size:105
Alignment explanation
Indices: 90522367--90522739 Score: 624
Period size: 105 Copynumber: 3.6 Consensus size: 105
90522357 TTGTATATAA
** *
90522367 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
*
90522432 TGAAATGTAAAAAAGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAAAGGGGTTGCTATGTGCTGATTCCCCCG
*
90522472 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
90522537 TGAAATGTGAAAAAGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAAAGGGGTTGCTATGTGCTGATTCCCCCG
*
90522577 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCG-TGATCCACCATATCT
*
90522641 TTGAAATGTG-AAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAAAGGGGTTGCTATGTGCTGATTCCCCCG
* ** *
90522681 AGGGGTTGCTAAGTGATGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCA
90522740 ATAACGGTTA
Statistics
Matches: 255, Mismatches: 11, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
104 82 0.32
105 172 0.67
106 1 0.00
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.30
Consensus pattern (105 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAAAGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:90522592 original size:27 final size:27
Alignment explanation
Indices: 90522550--90522601 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
90522540 AATGTGAAAA
*
90522550 AGGGGTTGCTATGTGCTGATTCCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCCG
90522577 AGGGGTTGCTAAGTGCTGATTCCCC
1 AGGGGTTGCTAAGTGCTGATTCCCC
90522602 GGTTCATTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.13, C:0.25, G:0.33, T:0.29
Consensus pattern (27 bp):
AGGGGTTGCTAAGTGCTGATTCCCCCG
Found at i:90525286 original size:2 final size:2
Alignment explanation
Indices: 90525279--90525317 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
90525269 TCAGCCAAAG
90525279 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
90525318 AGGAGATTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:90527327 original size:2 final size:2
Alignment explanation
Indices: 90527322--90527364 Score: 70
Period size: 2 Copynumber: 22.0 Consensus size: 2
90527312 TTTTTTCTTT
*
90527322 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA -A TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
90527363 TA
1 TA
90527365 ATCGCTCGTT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:90527614 original size:7 final size:7
Alignment explanation
Indices: 90527604--90527629 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
90527594 AAAATAATAA
90527604 ATTTTAT
1 ATTTTAT
90527611 ATTTTAT
1 ATTTTAT
90527618 ATTTTAT
1 ATTTTAT
90527625 ATTTT
1 ATTTT
90527630 CTAATTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (7 bp):
ATTTTAT
Found at i:90538764 original size:27 final size:27
Alignment explanation
Indices: 90538734--90538796 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
90538724 AATCCTCATT
90538734 AACACACCAGTATAAT-ATAGCCTCCCA
1 AACACACCAGTAT-ATCATAGCCTCCCA
* * *
90538761 AACACAACGGTATATCATATCCTCCCA
1 AACACACCAGTATATCATAGCCTCCCA
90538788 AACACACCA
1 AACACACCA
90538797 ATAAGGCATT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 2 0.07
27 28 0.93
ACGTcount: A:0.41, C:0.35, G:0.06, T:0.17
Consensus pattern (27 bp):
AACACACCAGTATATCATAGCCTCCCA
Found at i:90539319 original size:18 final size:17
Alignment explanation
Indices: 90539296--90539329 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
90539286 AAATTTTCTT
*
90539296 CAATTTATTCCTTAATTC
1 CAATTTAATCC-TAATTC
90539314 CAATTTAATCCTAATT
1 CAATTTAATCCTAATT
90539330 AACTCTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.32, C:0.21, G:0.00, T:0.47
Consensus pattern (17 bp):
CAATTTAATCCTAATTC
Found at i:90539727 original size:12 final size:12
Alignment explanation
Indices: 90539710--90539739 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
90539700 TCCCCCTTTT
90539710 TTTTTCTTCCCC
1 TTTTTCTTCCCC
90539722 TTTTTCTTCCCC
1 TTTTTCTTCCCC
*
90539734 TGTTTC
1 TTTTTC
90539740 CATTTTGTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.37, G:0.03, T:0.60
Consensus pattern (12 bp):
TTTTTCTTCCCC
Found at i:90539910 original size:41 final size:40
Alignment explanation
Indices: 90539864--90539944 Score: 101
Period size: 41 Copynumber: 2.0 Consensus size: 40
90539854 ATGTACCAAT
* *
90539864 ATTTTTATTATAATTGTCATTATT-CAATTTATTTATTATAA
1 ATTTTTATTATAATT-TAATTATTAC-ATTTACTTATTATAA
*
90539905 ATTTTTTTTATAATTTAATTATTATCATTTACTTATTATA
1 ATTTTTATTATAATTTAATTATTA-CATTTACTTATTATA
90539945 TAAGAAATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
40 7 0.20
41 27 0.77
42 1 0.03
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.60
Consensus pattern (40 bp):
ATTTTTATTATAATTTAATTATTACATTTACTTATTATAA
Found at i:90539934 original size:14 final size:14
Alignment explanation
Indices: 90539868--90539944 Score: 61
Period size: 14 Copynumber: 5.6 Consensus size: 14
90539858 ACCAATATTT
*
90539868 TTATTATAATTGTCA
1 TTATTATAATT-TAA
* *
90539883 TTATT-CAATTTAT
1 TTATTATAATTTAA
90539896 TTATTATAAATTT--
1 TTATTAT-AATTTAA
*
90539909 TTTTTATAATTTAA
1 TTATTATAATTTAA
* *
90539923 TTATTATCATTTAC
1 TTATTATAATTTAA
90539937 TTATTATA
1 TTATTATA
90539945 TAAGAAATTA
Statistics
Matches: 49, Mismatches: 9, Indels: 9
0.73 0.13 0.13
Matches are distributed among these distances:
12 5 0.10
13 12 0.24
14 22 0.45
15 10 0.20
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.60
Consensus pattern (14 bp):
TTATTATAATTTAA
Found at i:90540982 original size:17 final size:18
Alignment explanation
Indices: 90540962--90540996 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
90540952 TATTTTTTAA
90540962 AATAATTTT-TAAAATAC
1 AATAATTTTATAAAATAC
*
90540979 AATAGTTTTATAAAATAC
1 AATAATTTTATAAAATAC
90540997 TCGAACATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.51, C:0.06, G:0.03, T:0.40
Consensus pattern (18 bp):
AATAATTTTATAAAATAC
Found at i:90558321 original size:21 final size:21
Alignment explanation
Indices: 90558297--90558337 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
90558287 TAAATGAAAT
90558297 GTTACAGTTATATGGAAAGAG
1 GTTACAGTTATATGGAAAGAG
90558318 GTTACAGTTATATGGAAAGA
1 GTTACAGTTATATGGAAAGA
90558338 CACACTATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.39, C:0.05, G:0.27, T:0.29
Consensus pattern (21 bp):
GTTACAGTTATATGGAAAGAG
Found at i:90559385 original size:13 final size:13
Alignment explanation
Indices: 90559369--90559400 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
90559359 TATACGAGCT
*
90559369 TGTGACATGACCG
1 TGTGACACGACCG
90559382 TGTGACACGACCG
1 TGTGACACGACCG
90559395 TGTGAC
1 TGTGAC
90559401 CCTACTCAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.22, C:0.25, G:0.31, T:0.22
Consensus pattern (13 bp):
TGTGACACGACCG
Found at i:90565603 original size:10 final size:11
Alignment explanation
Indices: 90565573--90565597 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
90565563 GACGCTCTGG
90565573 TTTTCACTCAT
1 TTTTCACTCAT
90565584 TTTTCACTCAT
1 TTTTCACTCAT
90565595 TTT
1 TTT
90565598 CTCTCAAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.24, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTTCACTCAT
Found at i:90567747 original size:21 final size:21
Alignment explanation
Indices: 90567708--90567762 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
90567698 TTGCACATGG
* *
90567708 CCGTGTGACGAAGGCACAC-A
1 CCGTGTGAAGCAGGCACACGA
*
90567728 CCCGTGTGAAGCAGGGACACGA
1 -CCGTGTGAAGCAGGCACACGA
90567750 CCGTGTGAA-CAGG
1 CCGTGTGAAGCAGG
90567763 TTGTGTAACT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.13
21 25 0.83
22 1 0.03
ACGTcount: A:0.27, C:0.27, G:0.35, T:0.11
Consensus pattern (21 bp):
CCGTGTGAAGCAGGCACACGA
Found at i:90568418 original size:21 final size:20
Alignment explanation
Indices: 90568383--90568422 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
90568373 AGAAAGAAAG
90568383 AAAGTAAAAACAATAGAAATA
1 AAAGTAAAAACAATA-AAATA
* *
90568404 AAAGTAATAATAATAAAAT
1 AAAGTAAAAACAATAAAAT
90568423 TAATAACAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.70, C:0.03, G:0.07, T:0.20
Consensus pattern (20 bp):
AAAGTAAAAACAATAAAATA
Found at i:90570182 original size:27 final size:26
Alignment explanation
Indices: 90570151--90570224 Score: 62
Period size: 27 Copynumber: 2.8 Consensus size: 26
90570141 TAGTAAAGTG
90570151 CATAATAAAATAAAATAAAATAAAACA
1 CATAATAAAATAAAATAAAATAAAA-A
* ***
90570178 TATAAGTCCGA-AAAATAAAATAAAAA
1 CATAA-TAAAATAAAATAAAATAAAAA
90570204 CA-AATAACAATAAAAATAAAA
1 CATAATAA-AAT-AAAATAAAA
90570225 GATAGTTTGG
Statistics
Matches: 35, Mismatches: 8, Indels: 8
0.69 0.16 0.16
Matches are distributed among these distances:
24 1 0.03
25 3 0.09
26 2 0.06
27 27 0.77
28 2 0.06
ACGTcount: A:0.72, C:0.08, G:0.03, T:0.18
Consensus pattern (26 bp):
CATAATAAAATAAAATAAAATAAAAA
Found at i:90570217 original size:16 final size:15
Alignment explanation
Indices: 90570190--90570219 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
90570180 TAAGTCCGAA
90570190 AAATAAAATAAAAAC
1 AAATAAAATAAAAAC
90570205 AAATAACAATAAAAA
1 AAATAA-AATAAAAA
90570220 TAAAAGATAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.80, C:0.07, G:0.00, T:0.13
Consensus pattern (15 bp):
AAATAAAATAAAAAC
Found at i:90577731 original size:21 final size:20
Alignment explanation
Indices: 90577699--90577743 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
90577689 GTCTTAACAG
*
90577699 AACTGCTGATGTAGCAAGTT
1 AACTGCTAATGTAGCAAGTT
* *
90577719 AACTAGCTAATGTGGCCAGTT
1 AACT-GCTAATGTAGCAAGTT
90577740 AACT
1 AACT
90577744 TGCCACATTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (20 bp):
AACTGCTAATGTAGCAAGTT
Found at i:90577978 original size:73 final size:73
Alignment explanation
Indices: 90577859--90578001 Score: 259
Period size: 73 Copynumber: 2.0 Consensus size: 73
90577849 AGACTGTATG
* *
90577859 TCTTTGCTCCATGTCTGAATTCGGGGGCTGCTCAGCCTGTTAAAGAGCATTCTCCATTACGTGTA
1 TCTTTGCTCCATGTCTGAATTCGGGGGCTGCTCAGCCTATTAAAGAGCATTCTCCATTACATGTA
90577924 AAGCAGAC
66 AAGCAGAC
*
90577932 TCTTTGCTCCATGTCTGAATTCGGGGGCTGCTCAGCCTATTGAAGAGCATTCTCCATTACATGTA
1 TCTTTGCTCCATGTCTGAATTCGGGGGCTGCTCAGCCTATTAAAGAGCATTCTCCATTACATGTA
90577997 AAGCA
66 AAGCA
90578002 AGCAAAAAGT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 67 1.00
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.31
Consensus pattern (73 bp):
TCTTTGCTCCATGTCTGAATTCGGGGGCTGCTCAGCCTATTAAAGAGCATTCTCCATTACATGTA
AAGCAGAC
Found at i:90578654 original size:3 final size:3
Alignment explanation
Indices: 90578646--90578684 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
90578636 ATTTAATGAC
90578646 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
90578685 CCTCCTCTGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:90578863 original size:30 final size:31
Alignment explanation
Indices: 90578799--90578868 Score: 90
Period size: 30 Copynumber: 2.3 Consensus size: 31
90578789 CTGTTATTCA
* *
90578799 GTGACTGTTTTGTCACTTTTTTATAACGTTG
1 GTGACTGTTTTGTCACTTTTTCATAAAGTTG
*
90578830 GTGACTGTTTTGTTA-TTTTTCA-AAAGTTGG
1 GTGACTGTTTTGTCACTTTTTCATAAAGTT-G
90578860 GTGACTGTT
1 GTGACTGTT
90578869 GGTGTAATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
29 5 0.14
30 16 0.46
31 14 0.40
ACGTcount: A:0.17, C:0.10, G:0.23, T:0.50
Consensus pattern (31 bp):
GTGACTGTTTTGTCACTTTTTCATAAAGTTG
Found at i:90589260 original size:17 final size:18
Alignment explanation
Indices: 90589234--90589267 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
90589224 TTAAAAACTG
90589234 TTAAATTATAAAATATAA
1 TTAAATTATAAAATATAA
90589252 TTAAA-TATAAAATATA
1 TTAAATTATAAAATATA
90589268 TATATATGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
TTAAATTATAAAATATAA
Found at i:90592084 original size:6 final size:6
Alignment explanation
Indices: 90592075--90592103 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
90592065 AGAATGAGAA
90592075 TGCGAG TGCGAG TGCGAG TGCGAG TGCGA
1 TGCGAG TGCGAG TGCGAG TGCGAG TGCGA
90592104 ACATGATCCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.17, G:0.48, T:0.17
Consensus pattern (6 bp):
TGCGAG
Found at i:90593453 original size:12 final size:13
Alignment explanation
Indices: 90593421--90593453 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
90593411 TAAAAGAGAG
90593421 AGAGAGG-AGGAA
1 AGAGAGGAAGGAA
90593433 AGAGAGGAAGGAA
1 AGAGAGGAAGGAA
90593446 AG-GAGGAA
1 AGAGAGGAA
90593454 AGAGAAAGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 13 0.65
13 7 0.35
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (13 bp):
AGAGAGGAAGGAA
Found at i:90594384 original size:21 final size:21
Alignment explanation
Indices: 90594359--90594400 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
90594349 ATATTTAGTT
90594359 ATTTATTTTTAATTTAATTTA
1 ATTTATTTTTAATTTAATTTA
* *
90594380 ATTTATTTTTTATTTTATTTA
1 ATTTATTTTTAATTTAATTTA
90594401 TTTTTCTACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (21 bp):
ATTTATTTTTAATTTAATTTA
Found at i:90594394 original size:16 final size:16
Alignment explanation
Indices: 90594375--90594405 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
90594365 TTTTAATTTA
90594375 ATTTAATTTATTTTTT
1 ATTTAATTTATTTTTT
*
90594391 ATTTTATTTATTTTT
1 ATTTAATTTATTTTT
90594406 CTACATAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (16 bp):
ATTTAATTTATTTTTT
Found at i:90596141 original size:41 final size:41
Alignment explanation
Indices: 90596059--90596153 Score: 111
Period size: 41 Copynumber: 2.3 Consensus size: 41
90596049 TAGTTTATCT
** * * *
90596059 GATGATGCACTTATGTGTTAGCATACTTGTTCGGTATATCC
1 GATGATGCACTTACATGCTAGCATACTTGTTCAGTACATCC
*
90596100 GATGATGCACTTACATGCTAGTATA-TTGCTTCAGTACATCC
1 GATGATGCACTTACATGCTAGCATACTTG-TTCAGTACATCC
*
90596141 GATGATACACTTA
1 GATGATGCACTTA
90596154 TGTGCCAACA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
40 3 0.07
41 43 0.93
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (41 bp):
GATGATGCACTTACATGCTAGCATACTTGTTCAGTACATCC
Found at i:90596263 original size:43 final size:43
Alignment explanation
Indices: 90596198--90596303 Score: 124
Period size: 43 Copynumber: 2.5 Consensus size: 43
90596188 TGTATATCCA
** * * * *
90596198 ATGATGCACTATGCATGGCAATATAATTGATTCGGTTTGTTCG
1 ATGATGCACTATGTGTGCCAATATAATTGATTCAGCTTGTCCG
* *
90596241 ATGATGCACCT-TGTGTGCCAATATAATTGCTTTAGCTTGTCCG
1 ATGATGCA-CTATGTGTGCCAATATAATTGATTCAGCTTGTCCG
90596284 ATGATGCACTATGTGTGCCA
1 ATGATGCACTATGTGTGCCA
90596304 GTATGTTTCC
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 2 0.04
43 49 0.92
44 2 0.04
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.36
Consensus pattern (43 bp):
ATGATGCACTATGTGTGCCAATATAATTGATTCAGCTTGTCCG
Found at i:90603917 original size:42 final size:42
Alignment explanation
Indices: 90603857--90603967 Score: 150
Period size: 42 Copynumber: 2.6 Consensus size: 42
90603847 CGTTTTCTCA
** * * * *
90603857 ATGCCATAGTTCAACTATGGTATTACATATCTTCACATAATG
1 ATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAATG
* *
90603899 ATGCCATAGCCCAGCTATGGTCTTACACATATTCATATATTG
1 ATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAATG
90603941 ATGCCATAGCCCAGCTATGGTCTTACA
1 ATGCCATAGCCCAGCTATGGTCTTACA
90603968 AGAATCACAT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 61 1.00
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.32
Consensus pattern (42 bp):
ATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAATG
Found at i:90604041 original size:47 final size:47
Alignment explanation
Indices: 90603940--90604061 Score: 138
Period size: 47 Copynumber: 2.6 Consensus size: 47
90603930 TTCATATATT
* * * * * *
90603940 GATGCCATAGCCCAGCTATGGTCTTACA-AGAATCACATATCTCACT
1 GATGCCATATCCCAGATATGGTCTTATACAGAAGCACATATCACACC
* * * *
90603986 GATTCCATATCTCAGATATGGTCTTATACAGTAGCATATATCACACC
1 GATGCCATATCCCAGATATGGTCTTATACAGAAGCACATATCACACC
*
90604033 GATGCCATATCCCAGATATGATCTTATAC
1 GATGCCATATCCCAGATATGGTCTTATAC
90604062 GGAAATCACT
Statistics
Matches: 62, Mismatches: 13, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
46 23 0.37
47 39 0.63
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (47 bp):
GATGCCATATCCCAGATATGGTCTTATACAGAAGCACATATCACACC
Found at i:90604122 original size:31 final size:31
Alignment explanation
Indices: 90604087--90604204 Score: 175
Period size: 31 Copynumber: 3.8 Consensus size: 31
90604077 CTTGTCACTT
*
90604087 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
90604118 GTAGCCGGAGCTAGCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
90604149 GTAGCAGGAA-CTACCACTTTTCACTGATCAG
1 GTAGC-CGAAGCTACCACTTTTCACTGATCAG
*
90604180 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
90604205 TGTCATTGAT
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
30 3 0.04
31 73 0.94
32 2 0.03
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:90604248 original size:44 final size:45
Alignment explanation
Indices: 90604180--90604301 Score: 124
Period size: 50 Copynumber: 2.6 Consensus size: 45
90604170 CACTGATCAG
* *
90604180 GTAGCTGAAGCTACCACTTT-TCACTTGTCA-TTGATCAGATAAGT
1 GTAGCCGAAGCTATCA-TTTATCACTTGTCATTTGATCAGATAAGT
*
90604224 GTAGCCGAAGCTATCATTTATCACTT-TCACTTTTCCTTGATTAGATAAGT
1 GTAGCCGAAGCTATCATTTATCACTTGTCA----T--TTGATCAGATAAGT
*
90604274 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCATTTATCACTTGT
90604302 TGCCATGGTC
Statistics
Matches: 65, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
43 6 0.09
44 20 0.31
50 38 0.58
51 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.36
Consensus pattern (45 bp):
GTAGCCGAAGCTATCATTTATCACTTGTCATTTGATCAGATAAGT
Found at i:90604270 original size:50 final size:50
Alignment explanation
Indices: 90604198--90604299 Score: 168
Period size: 50 Copynumber: 2.0 Consensus size: 50
90604188 AGCTACCACT
*
90604198 TTTCACTTGTCATTGATCAGATAAGTGTAGCCGAAGCTATCATTTATCAC
1 TTTCACTTGTCATTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCAC
* * *
90604248 TTTCACTTTTCCTTGATTAGATAAGTGTAGCCGAAGCTATCACTTATCAC
1 TTTCACTTGTCATTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCAC
90604298 TT
1 TT
90604300 GTTGCCATGG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (50 bp):
TTTCACTTGTCATTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCAC
Found at i:90607805 original size:27 final size:27
Alignment explanation
Indices: 90607755--90607806 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
90607745 TGCAAACTAA
* ***
90607755 CTCCCTATTTATAATAACTTAAAAAAC
1 CTCCCTAATTATAATAAAAAAAAAAAC
90607782 CTCCCTAATTATAATAAAAAAAAAA
1 CTCCCTAATTATAATAAAAAAAAAA
90607807 TCAAAAGTTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.52, C:0.19, G:0.00, T:0.29
Consensus pattern (27 bp):
CTCCCTAATTATAATAAAAAAAAAAAC
Found at i:90613681 original size:14 final size:14
Alignment explanation
Indices: 90613662--90613692 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
90613652 TTTTGTACAT
90613662 TAGATCATCCATTG
1 TAGATCATCCATTG
90613676 TAGATCATCCATTG
1 TAGATCATCCATTG
90613690 TAG
1 TAG
90613693 GATTAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (14 bp):
TAGATCATCCATTG
Found at i:90616599 original size:25 final size:25
Alignment explanation
Indices: 90616546--90616604 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
90616536 TAAAAATAGT
* * *
90616546 ATATGTTTTAAATTATTTTGAATGA
1 ATATGTTTTAAATTATATTAAAAGA
90616571 ATATGTTTTAAATTAATATTAAAAG-
1 ATATGTTTTAAATT-ATATTAAAAGA
*
90616596 ATATCTTTT
1 ATATGTTTT
90616605 TTTTTATTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 22 0.76
26 7 0.24
ACGTcount: A:0.39, C:0.02, G:0.08, T:0.51
Consensus pattern (25 bp):
ATATGTTTTAAATTATATTAAAAGA
Found at i:90621403 original size:20 final size:20
Alignment explanation
Indices: 90621369--90621437 Score: 57
Period size: 20 Copynumber: 3.3 Consensus size: 20
90621359 GACATTAAAA
*
90621369 TAAATTAAAATGTTTCTTCAT
1 TAAA-TAAAAAGTTTCTTCAT
* *
90621390 TAAATAAAAAGTTTATCTTGAA
1 TAAATAAAAAG-TT-TCTTCAT
* * *
90621412 TAAATAACAAGTTTATACAT
1 TAAATAAAAAGTTTCTTCAT
90621432 TAAATA
1 TAAATA
90621438 TTTTTGTGGA
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
20 15 0.39
21 8 0.21
22 15 0.39
ACGTcount: A:0.48, C:0.07, G:0.06, T:0.39
Consensus pattern (20 bp):
TAAATAAAAAGTTTCTTCAT
Found at i:90624398 original size:23 final size:23
Alignment explanation
Indices: 90624372--90624423 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
90624362 AGGATTAACA
*
90624372 AATGTTAAAAGAAA-AGTTAAATG
1 AATGTTAAAAGAAACA-TTAAACG
90624395 AATGTTAAAAGAAACATTAAACG
1 AATGTTAAAAGAAACATTAAACG
90624418 AATGTT
1 AATGTT
90624424 GCATGACATA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.54, C:0.04, G:0.15, T:0.27
Consensus pattern (23 bp):
AATGTTAAAAGAAACATTAAACG
Found at i:90624403 original size:11 final size:12
Alignment explanation
Indices: 90624371--90624408 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
90624361 TAGGATTAAC
90624371 AAATGTTAAAAG
1 AAATGTTAAAAG
* *
90624383 AAAAGTTAAATG
1 AAATGTTAAAAG
90624395 -AATGTTAAAAG
1 AAATGTTAAAAG
90624406 AAA
1 AAA
90624409 CATTAAACGA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.61, C:0.00, G:0.16, T:0.24
Consensus pattern (12 bp):
AAATGTTAAAAG
Found at i:90625627 original size:53 final size:52
Alignment explanation
Indices: 90625569--90625701 Score: 153
Period size: 51 Copynumber: 2.6 Consensus size: 52
90625559 ATATCCTAAA
* ** **
90625569 TATGGTCTTATACGGAGTCATATTATCACAACACACTGATGCCATAGCGTAGC
1 TATGGTCTTATACGGAGTCACA-TATCACAACACACCAATGCCATAGCCCAGC
** **
90625622 TATGGTCTTATACGG-GTCACATATCTTATTACACCAATGCCATAGCCCAGC
1 TATGGTCTTATACGGAGTCACATATCACAACACACCAATGCCATAGCCCAGC
90625673 TATGGTCTTATACGGAAG-CACATATCACA
1 TATGGTCTTATACGG-AGTCACATATCACA
90625702 TCTTTTCCGT
Statistics
Matches: 67, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
51 37 0.55
52 14 0.21
53 16 0.24
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (52 bp):
TATGGTCTTATACGGAGTCACATATCACAACACACCAATGCCATAGCCCAGC
Found at i:90627188 original size:46 final size:44
Alignment explanation
Indices: 90627129--90627243 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
90627119 ACAGGACAGA
* *
90627129 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
90627175 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
90627219 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
90627244 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:90627224 original size:44 final size:45
Alignment explanation
Indices: 90627129--90627262 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
90627119 ACAGGACAGA
* *
90627129 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
90627175 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
90627219 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
90627263 CAGGTATTGA
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:90634566 original size:46 final size:44
Alignment explanation
Indices: 90634507--90634621 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
90634497 ACAGGACAGA
* *
90634507 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
90634553 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
90634597 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
90634622 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:90634602 original size:44 final size:45
Alignment explanation
Indices: 90634507--90634640 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
90634497 ACAGGACAGA
* *
90634507 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
90634553 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
90634597 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
90634641 CAGGGTATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:90650288 original size:11 final size:10
Alignment explanation
Indices: 90650252--90650361 Score: 66
Period size: 10 Copynumber: 11.3 Consensus size: 10
90650242 TAAAGACAAT
* *
90650252 AAAATTTATT
1 AAAAATTATA
*
90650262 AAAAACTATA
1 AAAAATTATA
90650272 AAAAATTATA
1 AAAAATTATA
90650282 AAAAA--AT-
1 AAAAATTATA
* * *
90650289 AGATATTGTA
1 AAAAATTATA
* *
90650299 AAATATTGTA
1 AAAAATTATA
90650309 AAAAATTAT-
1 AAAAATTATA
*
90650318 AAAAATTATT
1 AAAAATTATA
* *
90650328 AGAAATTGTA
1 AAAAATTATA
* *
90650338 AAAGATTGTA
1 AAAAATTATA
90650348 AAAAATTATTA
1 AAAAATTA-TA
90650359 AAA
1 AAA
90650362 TAGTAAAAAC
Statistics
Matches: 78, Mismatches: 17, Indels: 9
0.75 0.16 0.09
Matches are distributed among these distances:
7 3 0.04
8 2 0.03
9 10 0.13
10 58 0.74
11 5 0.06
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.33
Consensus pattern (10 bp):
AAAAATTATA
Found at i:90650304 original size:10 final size:9
Alignment explanation
Indices: 90650293--90650370 Score: 57
Period size: 10 Copynumber: 8.1 Consensus size: 9
90650283 AAAAATAGAT
90650293 ATTGTAAAA
1 ATTGTAAAA
90650302 TATTGTAAAAA
1 -ATTGT-AAAA
*
90650313 ATTATAAAA
1 ATTGTAAAA
* *
90650322 ATTATTAGAA
1 ATT-GTAAAA
90650332 ATTGTAAAA
1 ATTGTAAAA
90650341 GATTGTAAAAA
1 -ATTGT-AAAA
* *
90650352 ATTATTAAA
1 ATTGTAAAA
*
90650361 ATAGTAAAA
1 ATTGTAAAA
90650370 A
1 A
90650371 CTATTTAAAT
Statistics
Matches: 54, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
9 21 0.39
10 25 0.46
11 8 0.15
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (9 bp):
ATTGTAAAA
Found at i:90650335 original size:29 final size:29
Alignment explanation
Indices: 90650303--90650370 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
90650293 ATTGTAAAAT
90650303 ATTGTAAAAAATTAT-AAAAATTATTAGAA
1 ATTGTAAAAAATTATAAAAAATTATTA-AA
* *
90650332 ATTGTAAAAGATTGTAAAAAATTATTAAA
1 ATTGTAAAAAATTATAAAAAATTATTAAA
*
90650361 ATAGTAAAAA
1 ATTGTAAAAA
90650371 CTATTTAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 23 0.68
30 11 0.32
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.32
Consensus pattern (29 bp):
ATTGTAAAAAATTATAAAAAATTATTAAA
Found at i:90650347 original size:39 final size:38
Alignment explanation
Indices: 90650270--90650363 Score: 136
Period size: 39 Copynumber: 2.5 Consensus size: 38
90650260 TTAAAAACTA
* *
90650270 TAAAAAATTATAAAAA-AATAGATATTGTAAAATATTG
1 TAAAAAATTATAAAAATAATAGAAATTGTAAAAGATTG
*
90650307 TAAAAAATTATAAAAATTATTAGAAATTGTAAAAGATTG
1 TAAAAAATTATAAAAA-TAATAGAAATTGTAAAAGATTG
*
90650346 TAAAAAATTATTAAAATA
1 TAAAAAATTATAAAAATA
90650364 GTAAAAACTA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
37 16 0.31
38 2 0.04
39 33 0.65
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (38 bp):
TAAAAAATTATAAAAATAATAGAAATTGTAAAAGATTG
Found at i:90651632 original size:17 final size:17
Alignment explanation
Indices: 90651610--90651649 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
90651600 TTTTATAATG
* *
90651610 TATAATATCAATATATT
1 TATAATATAAATAAATT
90651627 TATAATATAAATAAATT
1 TATAATATAAATAAATT
90651644 TATAAT
1 TATAAT
90651650 TTTTTCCAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (17 bp):
TATAATATAAATAAATT
Found at i:90651661 original size:27 final size:30
Alignment explanation
Indices: 90651621--90651702 Score: 84
Period size: 27 Copynumber: 2.9 Consensus size: 30
90651611 ATAATATCAA
**
90651621 TATATTTATAATATAAATAAATTTAT-AAT
1 TATATTTCCAATATAAATAAATTTATAAAT
* *
90651650 T-T-TTTCCAATAT-GAT-GATATTATAAAT
1 TATATTTCCAATATAAATAAAT-TTATAAAT
90651677 TATATTTCCAATATAAATAAATTTAT
1 TATATTTCCAATATAAATAAATTTAT
90651703 CATATAAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
25 2 0.05
26 6 0.15
27 12 0.29
28 2 0.05
29 11 0.27
30 6 0.15
31 2 0.05
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (30 bp):
TATATTTCCAATATAAATAAATTTATAAAT
Found at i:90652107 original size:20 final size:21
Alignment explanation
Indices: 90652082--90652120 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
90652072 ATGTTAATGT
90652082 TAAATAAAT-ATAAAATATTG
1 TAAATAAATAATAAAATATTG
*
90652102 TAAATAATTAATAAAATAT
1 TAAATAAATAATAAAATAT
90652121 GTATTTAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (21 bp):
TAAATAAATAATAAAATATTG
Found at i:90657540 original size:34 final size:34
Alignment explanation
Indices: 90657497--90657565 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
90657487 AATGGAACGA
90657497 TGATGATTGATCATTGATGGATACCGTTGCCATG
1 TGATGATTGATCATTGATGGATACCGTTGCCATG
90657531 TGATGATTGATCATTGATGGATACCGTTGCCATG
1 TGATGATTGATCATTGATGGATACCGTTGCCATG
90657565 T
1 T
90657566 TTTCTTTCTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.23, C:0.14, G:0.26, T:0.36
Consensus pattern (34 bp):
TGATGATTGATCATTGATGGATACCGTTGCCATG
Found at i:90659576 original size:27 final size:23
Alignment explanation
Indices: 90659530--90659577 Score: 60
Period size: 27 Copynumber: 1.9 Consensus size: 23
90659520 ATTAAGACAA
90659530 CCAAATAACAATAGAAATTAAAT
1 CCAAATAACAATAGAAATTAAAT
90659553 CCAATATAAGCAATCAGAAGATTAA
1 CCAA-ATAA-CAAT-AGAA-ATTAA
90659578 CTCACTTCAG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 4 0.19
25 4 0.19
26 4 0.19
27 5 0.24
ACGTcount: A:0.56, C:0.15, G:0.08, T:0.21
Consensus pattern (23 bp):
CCAAATAACAATAGAAATTAAAT
Found at i:90666351 original size:18 final size:18
Alignment explanation
Indices: 90666328--90666364 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
90666318 AGTTACACGG
*
90666328 CTGTGTAACTCATTATGA
1 CTGTGTAACTCACTATGA
90666346 CTGTGTAACTCACTATGA
1 CTGTGTAACTCACTATGA
90666364 C
1 C
90666365 CATGTGCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (18 bp):
CTGTGTAACTCACTATGA
Found at i:90666958 original size:493 final size:493
Alignment explanation
Indices: 90665893--90672782 Score: 7753
Period size: 481 Copynumber: 14.1 Consensus size: 493
90665883 TTCGTCACCC
* *
90665893 AACAAACCCAACCATGTGTAATGCATAATTGAATATCAATCATGTAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* *
90665958 ACAATATCGGTAAGAAAATCATATCAATCATGTAGCATAGCAAGCTAAACAGT----ACAGTAAC
66 ACAATATAGGTAAGAGAATCATATCAATCATGTAGCATAGCAAGCTAAACAGTACAAACAGTAAC
** * *
90666019 ------AGTAACAATTGTTTAATCAACATAATTTAGTATAATAGTTTTGGAGACACGATTTTTAT
131 AGTAATAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCAT
* **
90666078 GTAATCACTATTAACAATAGCAATCAAGACATG-TTTTATGCAACCAATTTCATATCAATCACGA
196 GTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGA
* * * * *
90666142 TCATATAATCAATTAATCAGGAATAAAGACTTAATCATGACTTTAGGGCACTAACATGTAGGGAA
261 TCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAA
* * * * *
90666207 TTATTCATGGACTAAAATGAAACATATAGCAAAATAGTGGAGTAACAGTGAAATAGGGGCTCACA
326 TTACTCAGGGACTAAAATGAAACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACA
* * * * * *
90666272 CGACTGTGTGGGGAGGTCGTGTGAGGCGGTTTAGACTATGTTACTAAGTTACACGGCTGTGTAAC
391 CGGCTGTGTGAGGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACA----TG-G----
* * *
90666337 TCATTATGACTGTGTAACTCACTATGACCATGTGCAAATAAAAAAAAATTTCCC-A
447 -C-------C-GTGTAACTCACTGTGACCGTGTGCAAATCAAAAAAAATTTCCCAA
* *
90666392 AACAAACCCAACCACATGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAAT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* *
90666457 ACAATATAGGTAAGAGAATCATATCAATCATGTAGTATAGCAAGCTAAACAGTACAATAATAGTA
66 ACAATATAGGTAAGAGAATCATATCAATCATGTAGCATAGCAAGCTAAACAGTAC-A-AACAGTA
*
90666522 ACAGTAATAGTAAAAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTC
129 ACAGTAATAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTC
* *
90666587 ATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGGAACCAATTTCATATCAATTAC
194 ATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCAC
* * *
90666652 GATCATATAATCAATTAATCAATAATGAAGTCTTAATCATGATTTTATGGCTCTAACATGTAAGG
259 GATCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGG
* * * * * *
90666717 AATTATTTAGGGATTAAAATGAAACATCTCGTAAAATAATGGAGAAACAGTGGAATA-GGGCTCA
324 AATTACTCAGGGACTAAAATGAAACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCA
* * * * *
90666781 CATGGCTGTGTGAAGAGGCCGTGTGAGGGGGTTTAGACCGTGTTACTGAGTTATATGGCCATGTA
389 CACGGCTGTGTGAGGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCCGTGTA
* * * *
90666846 ACTCATTGTGACCATATGCAAAT-AAAAAAAATTTCTCAA
454 ACTCACTGTGACCGTGTGCAAATCAAAAAAAATTTCCCAA
* * * * *
90666885 AACAAACCTAACCATGTGTAATGCATATTTGAATACCAATTATGTGGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * * *
90666950 -CTAATATAGGTAAGAGATTCATATCAATCATGTAGCATAGCATGCTAACCAGTATAGCAACAGT
66 AC-AATATAGGTAAGAGAATCATATCAATCATGTAGCATAGCAAGCTAAACAGTACA--AACAGT
* * * * *
90667014 AACAATAATAGTAACAATTTTTTAATCAACATGCTTTAGTATAAAAGTTTTGAAGACAGGATTTT
128 AACAGTAATAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTT
* * * * *
90667079 CATGTAATTACTATTAACAATACCAATCAAGGCACGCTTACATGCGACTAATTTCATATCAATCA
193 CATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCA
* * * * *
90667144 CGATCATATAATCAATTAATCATGAATGAAGTTTTAATTATGATTTTAGGGCTCAAACATATAGG
258 CGATCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGG
** * ** *
90667209 GAATTACTCATTGACTAAAATGAAACATATCGCAAAATAGTGGAAAAACAGTACAATAGGGGTTC
323 GAATTACTCAGGGACTAAAATGAAACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTC
* * *
90667274 ACACGGCAGTGT-AGGGAGACCGTGT--GGGGGTTTAGACCGTGTTACTGAGTTACATGACCGAG
388 ACACGGCTGTGTGA-GGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACAT----G-G
* * * *
90667336 TAACTCACTATGACCATGTAAATCATTGTGACCATGTGCAAATCGAAAAAAATTTCCCAA
447 -----C-C---G----TGTAACTCACTGTGACCGTGTGCAAATCAAAAAAAATTTCCCAA
* * * * *
90667396 AACAAACTCAACCATGTGTAATGCGTAATTGAATACCAATCATGTAGCAAATCATGCTAAACAAT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * * *
90667461 ACATTATCGGTAAGAGAATCATATCAATTATGTAGCATAGCATGCT--ACA-T------AGT-AC
66 ACAATATAGGTAAGAGAATCATATCAATCATGTAGCATAGCAAGCTAAACAGTACAAACAGTAAC
* * *
90667516 AGTAATAGTAATAATTGTTTAATTAACATGCTTTAGTATAACAGTTTTGGAGACACAATTTTCAT
131 AGTAATAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCAT
* * *
90667581 GTAATCACTATTAACAATAACAATCAAGGCATGCTTATATGCAACCAATTTCATATCGATCACGA
196 GTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGA
* * * *
90667646 TCATATAATCAATTAATC-AGTAATGAAATCTTAATTATAATTTTAGGGCTCTAACATGTAGAGA
261 TCATATAATCAATTAATCAAG-AATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGA
** * *
90667710 ATTACTCTA-GGAAAAAAATCAAACATATCGCAAAATAATGGA-AAA-AGTGGAATAGGGGCTCA
325 ATTACTC-AGGGACTAAAATGAAACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCA
* * * *
90667772 CACGGTTGTGT-AGGGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTAAGTAACATGGTCGTGT
389 CACGGCTGTGTGA-GGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCCGTGT
* *
90667836 AACTCACTTTGACCGTGTGCAAATCAAAAATAACTTT-CCAA
453 AACTCACTGTGACCGTGTGCAAATCAAAAA-AAATTTCCCAA
* * * *
90667877 AACAAACCCAACTACGTGTAATGCATAATTGAATAACAATCATGTAGGATATCATGCTACACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * * * * *
90667942 AAAATATCGGTAAAAGAATCATATTAATCATATAGCATAGCACGCTAAACAGT----ACAGTAAC
66 ACAATATAGGTAAGAGAATCATATCAATCATGTAGCATAGCAAGCTAAACAGTACAAACAGTAAC
* * * *
90668003 ------AGTAACGATTGTTTAATCAACATTCTTTAGTATAACTGTTTTGGATACACGATTTTCAT
131 AGTAATAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCAT
*
90668062 GTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCATGA
196 GTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGA
* *
90668127 ACATATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAA
261 TCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAA
* * * * * *
90668192 TTACTCAGGGGCTAAAATGATACATATAGTAAAATAGTGAAGAAACAATGGAATAGGGGCTCACA
326 TTACTCAGGGACTAAAATGAAACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACA
* * * * *
90668257 CGGCTGTGTGGGGAGGCCGTGTGAGAGGGTTTAGACCATGTTACTCAGTTACATAGCTGTGTAAC
391 CGGCTGTGTGAGGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCCGTGTAAC
* *
90668322 TCACCGTGACTGTGTGCAAAT-AAAAAAAA-TTCCCAA
456 TCACTGTGACCGTGTGCAAATCAAAAAAAATTTCCCAA
* * * *
90668358 AATAAACCCAACCACGTGTAATGCATAACTGAATACCAAACATGTAGCATGTCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
*
90668423 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCAAGCTAAACAGT----AC-G----
66 ACAATATAGGTAAGAGAATCATATCAATCATGTAGCATAGCAAGCTAAACAGTACAAACAGTAAC
* * *
90668479 A-TAACAGTAACAATTATTTAATCAATATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCAT
131 AGTAATAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCAT
* * * *
90668543 GTAATCACTATTAACAATAGCAATCAAAGTATACTTACATGCAACCAATTTCATATCAATCACAA
196 GTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGA
* * *
90668608 TCATATAATCAATTAATCAAGAATGAAGACTTAATCA-CA----A------T--CA--TAGCGAA
261 TCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAA
* * * *
90668658 TTACTCAGGGACTAAAATGAAACATATCGTAAAATAGTAGAGAAACAGTGGAATAAGGACTCACA
326 TTACTCAGGGACTAAAATGAAACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACA
* * * * * * *
90668723 CGACTGTG-GCGGGAAGCCGTGAGAGGGGATTTAGACCATGATACTGAGTTACATAGCCGTGTAA
391 CGGCTGTGTG-AGGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCCGTGTAA
* * * *** *
90668787 CTCACTGTGACCGTGTGTAACTCGAAAATTTTTTTCCAA
455 CTCACTGTGACCGTGTGCAAATCAAAAAAAATTTCCCAA
90668826 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * ** **
90668891 AAAATATCA-GTAAGAGAATCATATCAATCATGTAGCATAACGTGCTAAATTGT----ACAGTAA
66 ACAATAT-AGGTAAGAGAATCATATCAATCATGTAGCATAGCAAGCTAAACAGTACAAACAGTAA
* * * *
90668951 CAG---TAG---CAATTGTTTAATCAACATACTTTAGGATAACAG-TTTAGAGACATGATTTTCA
130 CAGTAATAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCA
* * * * * *
90669009 TGTAATCACTATTAACAATACCAATCAATGCATGCTTACAGGTAACCAATATCATGTCAATCACG
195 TGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACG
* * *
90669074 ATCATATAATCAATTAATCAAGATTGAAGTCTTAATCATGATTTTAGCGCTCTAACATGCAGGGA
260 ATCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGA
* * ** * * *
90669139 A-TATTCAGGGACTAAAATGATACATATCATAAAATAATGGAGAAACAATGGAATAGGGGATCAC
325 ATTACTCAGGGACTAAAATGAAACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCAC
* * * * ***
90669203 ACAGCTGTGTGAGGAGGCCGTGTGAGAGGGTTTAGACCATGTTA-GGAGTTACACGGCTAAGTAA
390 ACGGCTGTGTGAGGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCCGTGTAA
* ** **
90669267 CTCATTGTGATTGTGTGCAAATCGAAAAAAAA-TTCTTAA
455 CTCACTGTGACCGTGTGCAAATC-AAAAAAAATTTCCCAA
* * * * *
90669306 AACGAACCTAACCACGTGTAATGCATAACTGAATACCAAACATGTACCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * *
90669371 ACAATATCA-GTAAGAGAATCATATCAATCATGGAGCATAGCATGCTAAACAGT----ATAGTAA
66 ACAATAT-AGGTAAGAGAATCATATCAATCATGTAGCATAGCAAGCTAAACAGTACAAACAGTAA
* * * *
90669431 CAGTAACAATAACAATTGTTTAATCAACATGATTTAGTATAACAGTTTTGGAGACACAATTTTCA
130 CAGTAATAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCA
* *
90669496 TGTAATCACTATTAACAATAGCAATCAAGGCATACTTACATGCAACCAATTTCATATCAATTACG
195 TGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACG
* * *
90669561 ATTATATAATCAATTAATCAATAATGAAGTCTTAATCATGATTTTAAGGCTCTAACATGTAGGGA
260 ATCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGA
* * * ** * **
90669626 ATTACTTAGGAACTAAAATGAAACATCTTACAAAATAATGGAGAAACAGTATAATA-GGGCTCAC
325 ATTACTCAGGGACTAAAATGAAACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCAC
* * * *
90669690 ACAGCTGTGTGGGGAGGCCGTGTGAGGGGGTTTAGACCGTGTTACTGAGTTACATGGTCGTGTAA
390 ACGGCTGTGTGAGGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCCGTGTAA
* *
90669755 CTTACTGTGACCGTGTGCAAAT-AGAAAAAATTTCCCAA
455 CTCACTGTGACCGTGTGCAAATCAAAAAAAATTTCCCAA
* * ** *
90669793 AACAAACCCAACCACTTGTAATGTATTTTTGAATACCAATGATGTAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * *
90669858 ACAATATAGGTAAGAGATTCATATCAATCATGTAGCATAGCATGCTAAACAGTATAATAACAGTA
66 ACAATATAGGTAAGAGAATCATATCAATCATGTAGCATAGCAAGCTAAACAGTA-CA-AACAGTA
* * * *
90669923 ACAGTAATAGTAACAATTGTTTAATCAACATGTTTTAGTATAACAGTTTTGAAGGCATGATTTTC
129 ACAGTAATAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTC
* * * * * *
90669988 ATGTAATTACTATTAACAATAGCAACCAAGCCATGCTTATATGTAACCAATTTCATATCAATCAT
194 ATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCAC
* * * **
90670053 GATCCTATAATCAATTAATCACA-AATGATGTTTTAATCATGATTTTAGGGCTCTAACATGTAAA
259 GATCATATAATCAATTAATCA-AGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGG
* * * * * *
90670117 GAATTACTCATGAAATAAAATGAAACATATCACAAAATAGTGGAGAAACAGTGTAATAGGGGTTC
323 GAATTACTCAGGGACTAAAATGAAACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTC
* * * * * * * *
90670182 ATACGGTTGTCTAAAGAGGCCGTGTGAAGGGGTTTAGACC--G----T--GTTACATGACCGAGT
388 ACACGGCTGTGTGAGGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCCGTGT
*
90670239 AACTCACTGCGACCGTGTGCAAAT---AAAAAATTTCCCAA
453 AACTCACTGTGACCGTGTGCAAATCAAAAAAAATTTCCCAA
* * * *
90670277 CACAAACCCAACCACGTGTAATGCATAACTGAATACCAATCATGTAGCATATCAAGCTAAATAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* ** *
90670342 ACAATATCGGTAAGAGAATCATATCAATCATACAGCATAGC-A--T---C-CT--AAACAGT-AC
66 ACAATATAGGTAAGAGAATCATATCAATCATGTAGCATAGCAAGCTAAACAGTACAAACAGTAAC
*
90670397 AGTAATAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGATTTGGAGACACGATTTTCAT
131 AGTAATAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCAT
* * * *
90670462 GTAATTACTGTTAACAATAGCAATCAAGGCATGCTTACATGTAACCAATTTCATGTCAATCACGA
196 GTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGA
*
90670527 TCATATAATCAATTAATCAAGATTGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAA
261 TCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAA
* * * * * * *
90670592 TTACTTAGGGACAAAAATTATACATATCGTAAAATAGTGCAGAAACAGTAGAATAGGGGCTCACA
326 TTACTCAGGGACTAAAATGAAACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACA
*
90670657 CGGCTGTGTGAGGAGGCCTTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCCGTGTAAC
391 CGGCTGTGTGAGGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCCGTGTAAC
* * * *
90670722 TCACTGTGACCGTATGCAAATCGAAAATAACTTCCCAA
456 TCACTGTGACCGTGTGCAAATCAAAAAAAATTTCCCAA
* * *
90670760 AACAAACCCAACTACGTGTAATGCATAATTGAATTA-CAAACATGTAGCATATCATGTTAAACAG
1 AACAAACCCAACCACGTGTAATGCATAATTGAA-TACCAATCATGTAGCATATCATGCTAAACAG
* * * ** *
90670824 TACATTATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTGTAGTAATAGT
65 TACAATATAGGTAAGAGAATCATATCAATCATGTAGCATAGCAAGCTAAACA--GTACAAACAGT
**
90670889 AACAGTAACGGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTT
128 AACAGTAATAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTT
* * * * * *
90670954 CATGTAATCACTATTGACAATACCAGTCAAAGCATGCTTACATGTAGCCAATTTCATATCAATCA
193 CATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCA
* ** *
90671019 CGATCATATAATCAATTAATCAAGAATGAAGGCTTAATCATGATTTTAAAGCTCTAACATTTA-G
258 CGATCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGG
* * * *** * * *
90671083 GAATTACTCAGGGACTAAAATGATAGATATC-CTAAAATTGCAAAGAAACAATGGAATAAGGACT
323 GAATTACTCAGGGACTAAAATGAAACATATCGC-AAAATAGTGGAGAAACAGTGGAATAGGGGCT
* * * * * * *
90671147 CACACGGCTGTGTGCGGAGG-C-TGTGAGAGGGGCTTATACCGTATTACTAAGTTACAT-ACTCG
387 CACACGGCTGTGTGAGGAGGCCGTGTGAG-GGGGTTTAGACCATGTTACTGAGTTACATGGC-CG
90671209 TGTAACTCACTGTGACCGTGTGCAAATC-AAAAAAA-TTCCCAA
450 TGTAACTCACTGTGACCGTGTGCAAATCAAAAAAAATTTCCCAA
* * * * *
90671251 AACAAACCTAACAACGTGTAATGCATAATTTAATACCAGTCATATAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
*
90671316 ACAATATCA-GTAAGAGAATCATATCAATCATGT---A-A-C-A--T-AACA-TGCTAAACAGT-
66 ACAATAT-AGGTAAGAGAATCATATCAATCATGTAGCATAGCAAGCTAAACAGTAC-AAACAGTA
* *
90671369 ACAGTAATAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGGTTTGGAGACAAGATTTTC
129 ACAGTAATAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTC
* * * * *
90671434 ATGTAATCATTATTAACAATAGAAACCATGGCATGCTTACATGTAACCAATTTCATATCAATCAC
194 ATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCAC
* * **
90671499 GATCATATAACCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGCATAG
259 GATCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGG
* * * * * *
90671564 AATGT-TTTAAGGACTAAAATGATACATATCGCAAAATAATGGAAAAACAGTGGAATAGGGGCTC
324 AAT-TACTCAGGGACTAAAATGAAACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTC
* * * ** * *
90671628 ACACAGCTGTGT-AGGGAGGCCGTGTGA-GGGATTTAAACTGTGTTACTGAGTTATATGGCTGTG
388 ACACGGCTGTGTGA-GGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCCGTG
* * *
90671691 TAACTCACTGTGACTGTGTGCAAATTGAAAAAAAA-ATCCCAA
452 TAACTCACTGTGACCGTGTGCAAA-TCAAAAAAAATTTCCCAA
* * * * *
90671733 AACAAACCTAGCCACATGTAAGGCATAATTAAATACCAATCATGTAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
*
90671798 ACAATATCA-GTAAGAGAATCATATCAATCATGTAGCATAGCACGCTAAACAGTACAGTAACAGT
66 ACAATAT-AGGTAAGAGAATCATATCAATCATGTAGCATAGCAAGCTAAACAGTACA--AACAGT
* *
90671862 AACAGTAACAGTAACAGTAACAATTGTGTAATCAACATGTTTTAGTATAACAGTTTTGGAGATC-
128 AACAGT-A-A-T---AGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGA-CA
* *
90671926 TGATTTTCATGTAATCACTATTAACAATAGCAATCAAGGTATGCTTACATGCAACCAATTTCATA
186 CGATTTTCATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATA
* * *
90671991 CCAATCACAATCATATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAAC
251 TCAATCACGATCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAAC
* * * * * * * * *
90672056 AGGTAGGGAATTTCTCTGGGACTAAAATGATACATATCCCAAAACAGTGGAGATACAGTGTAGTA
316 ATGTAGGGAATTACTCAGGGACTAAAATGAAACATATCGCAAAATAGTGGAGAAACAGTGGAATA
* * * * * * *
90672121 GGGGCACACACGGCTGTGTGGGGAGGCCGTGTGAGGGTGTTTAAACCGTGTTACTCAGTTACATA
381 GGGGCTCACACGGCTGTGTGAGGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATG
* * * * * *
90672186 GCTGTCTAACTCATTATGACC-TAGTGCAAATCAAAAAATATTTTCCAA
446 GCCGTGTAACTCACTGTGACCGT-GTGCAAATCAAAAAAAATTTCCCAA
* * *
90672234 AACAAACCCAACCACGTGTAATGCGTAATTGAATAACAATCATGTAGCATATCATGCTAAACTGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * *
90672299 ACAATATCGGTAAGAG-A--A-ATCAATCATGTAACATAGCAAGGTAAACAGT----AC--T---
66 ACAATATAGGTAAGAGAATCATATCAATCATGTAGCATAGCAAGCTAAACAGTACAAACAGTAAC
* * ** *
90672351 A-TAACAGTAACAATTGTTTAATCAACATGCTTTAATATAATTGTTTTAGAGACACGATTTTCAT
131 AGTAATAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCAT
* * ** * * *
90672415 GTAATCACTATTAACAATATCAATCAATGCATATTTACATGCAACAAATTTCATACCAATCAAGA
196 GTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGA
* *
90672480 TCATATAATCAATTAATCAGGAGTGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAA
261 TCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAA
* * * * *
90672545 TTACTTAGGAACTAAAATGATACATAACCCAAAATAG-GAGAGAAACAGTGGAATAGGGGCTCAC
326 TTACTCAGGGACTAAAATGAAACATATCGCAAAATAGTG-GAGAAACAGTGGAATAGGGGCTCAC
* * * * * * * * * * * **
90672609 AAGCCTATGTGGGGAGACCTTGT-AAGGGGTCTAGACCATGTTACTCAATTACATAGCTATGTAA
390 ACGGCTGTGTGAGGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCCGTGTAA
* * * * *
90672673 CTTACTATGACCGTATGCAAATCGAAAAACATTTCCCAA
455 CTCACTGTGACCGTGTGCAAATCAAAAAAAATTTCCCAA
* * * *
90672712 AACAAAACCAACCACGTGTAAGGCATACTTGAATACCAATCATGTAGCATATCATGCTAAATAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
*
90672777 AAAATA
66 ACAATA
90672783 ATAGTAACAG
Statistics
Matches: 5467, Mismatches: 749, Indels: 371
0.83 0.11 0.06
Matches are distributed among these distances:
465 1 0.00
466 135 0.02
467 113 0.02
468 146 0.03
469 1 0.00
470 1 0.00
471 3 0.00
472 261 0.05
473 7 0.00
474 2 0.00
476 1 0.00
477 1 0.00
478 132 0.02
479 415 0.08
480 311 0.06
481 685 0.13
482 133 0.02
483 203 0.04
484 111 0.02
485 3 0.00
486 79 0.01
487 294 0.05
488 79 0.01
489 2 0.00
490 3 0.00
491 99 0.02
492 61 0.01
493 644 0.12
494 144 0.03
495 178 0.03
496 2 0.00
497 65 0.01
498 5 0.00
499 346 0.06
500 255 0.05
501 126 0.02
502 1 0.00
503 1 0.00
505 7 0.00
506 1 0.00
507 2 0.00
508 1 0.00
509 2 0.00
510 25 0.00
511 249 0.05
512 131 0.02
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (493 bp):
AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
ACAATATAGGTAAGAGAATCATATCAATCATGTAGCATAGCAAGCTAAACAGTACAAACAGTAAC
AGTAATAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCAT
GTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGA
TCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAA
TTACTCAGGGACTAAAATGAAACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACA
CGGCTGTGTGAGGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCCGTGTAAC
TCACTGTGACCGTGTGCAAATCAAAAAAAATTTCCCAA
Found at i:90668367 original size:481 final size:481
Alignment explanation
Indices: 90665893--90677065 Score: 12064
Period size: 479 Copynumber: 23.1 Consensus size: 481
90665883 TTCGTCACCC
* *
90665893 AACAAACCCAACCATGTGTAATGCATAATTGAATATCAATCATGTAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* *
90665958 ACAATATCGGTAAGAAAATCATATCAATCATGTAGCATAGCAAGCTAAACAGTACAGTAACAGTA
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTACAGTAACAGTA
** * *
90666023 ACAATTGTTTAATCAACATAATTTAGTATAATAGTTTTGGAGACACGATTTTTATGTAATCACTA
131 ACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTA
* **
90666088 TTAACAATAGCAATCAAGACATG-TTTTATGCAACCAATTTCATATCAATCACGATCATATAATC
196 TTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAATC
* * * * * * *
90666152 AATTAATCAGGAATAAAGACTTAATCATGACTTTAGGGCACTAACATGTAGGGAATTATTCATGG
261 AATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTCAGGG
* * * * *
90666217 ACTAAAATGAAACATATAGCAAAATAGTGGAGTAACAGTGAAATAGGGGCTCACACGACTGTGTG
326 ACTAAAATGAAACATATCGCAAAATAGTGAAGAAACAGTGGAATAGGGGCTCACACGGCTGTGTG
* *
90666282 GGGAGGTCGTGTGAGGCGGTTTAGACTATGTTACTAAGTTACACGGCTGTGTAACTCATTATGAC
391 GGGAGGCCGTGTGAGG-GGTTTAGACCATGTTACT--G----A-----GT-T-A--CA-TA-G-C
* * *
90666347 TGTGTAACTCACTATGACCATGTGCAAATAAAAAAAAATTTCCC-A
437 TGTGTAACTCACTGTGACCGTGTGCAAATCAAAAAAAA-TTCCCAA
* *
90666392 AACAAACCCAACCACATGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAAT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * *
90666457 ACAATATAGGTAAGAGAATCATATCAATCATGTAGTATAGCAAGCTAAACAGTACAATAATAGTA
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTAC------AGTA
*
90666522 ACAGTAATAGTAAAAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTC
125 AC------AGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTC
* *
90666587 ATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGGAACCAATTTCATATCAATTAC
184 ATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCAC
* * *
90666652 GATCATATAATCAATTAATCAATAATGAAGTCTTAATCATGATTTTATGGCTCTAACATGTAAGG
249 GATCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGG
* * * * * * *
90666717 AATTATTTAGGGATTAAAATGAAACATCTCGTAAAATAATGGAGAAACAGTGGAATA-GGGCTCA
314 AATTACTCAGGGACTAAAATGAAACATATCGCAAAATAGTGAAGAAACAGTGGAATAGGGGCTCA
* ** * * * **
90666781 CATGGCTGTGTGAAGAGGCCGTGTGAGGGGGTTTAGACCGTGTTACTGAGTTATATGGCCATGTA
379 CACGGCTGTGTGGGGAGGCCGTGTGA-GGGGTTTAGACCATGTTACTGAGTTACATAGCTGTGTA
* * * *
90666846 ACTCATTGTGACCATATGCAAAT-AAAAAAAATTTCTCAA
443 ACTCACTGTGACCGTGTGCAAATCAAAAAAAA-TTCCCAA
* * * * *
90666885 AACAAACCTAACCATGTGTAATGCATATTTGAATACCAATTATGTGGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * *
90666950 -CTAATATAGGTAAGAGATTCATATCAATCATGTAGCATAGCATGCTAACCAGTATAGCAACAGT
66 AC-AATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAG--T----ACAGT
* * * *
90667014 AACAATAATAGTAACAATTTTTTAATCAACATGCTTTAGTATAAAAGTTTTGAAGACAGGATTTT
124 AAC------AGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTT
* * * * *
90667079 CATGTAATTACTATTAACAATACCAATCAAGGCACGCTTACATGCGACTAATTTCATATCAATCA
183 CATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCA
* * * * *
90667144 CGATCATATAATCAATTAATCATGAATGAAGTTTTAATTATGATTTTAGGGCTCAAACATATAGG
248 CGATCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGG
** ** *
90667209 GAATTACTCATTGACTAAAATGAAACATATCGCAAAATAGTGGAA-AAACAGTACAATAGGGGTT
313 GAATTACTCAGGGACTAAAATGAAACATATCGCAAAATAGT-GAAGAAACAGTGGAATAGGGGCT
* * * *
90667273 CACACGGCAGTGTAGGGAGACCGTGTG-GGGGTTTAGACCGTGTTACTGAGTTACATGACCGAGT
377 CACACGGCTGTGTGGGGAGGCCGTGTGAGGGGTTTAGACCATGTTACTGAGTTACAT-----AG-
* * * *
90667337 AACTCACTATGACCATGTAAATCATTGTGACCATGTGCAAATCGAAAAAAATTTCCCAA
436 ------C--TG----TGTAACTCACTGTGACCGTGTGCAAATC-AAAAAAAATTCCCAA
* * * * *
90667396 AACAAACTCAACCATGTGTAATGCGTAATTGAATACCAATCATGTAGCAAATCATGCTAAACAAT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * * * *
90667461 ACATTATCGGTAAGAGAATCATATCAATTATGTAGCATAGCATGCTACATAGTACAGTAATAGTA
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTACAGTAACAGTA
* * *
90667526 ATAATTGTTTAATTAACATGCTTTAGTATAACAGTTTTGGAGACACAATTTTCATGTAATCACTA
131 ACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTA
* * *
90667591 TTAACAATAACAATCAAGGCATGCTTATATGCAACCAATTTCATATCGATCACGATCATATAATC
196 TTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAATC
* * * *
90667656 AATTAATC-AGTAATGAAATCTTAATTATAATTTTAGGGCTCTAACATGTAGAGAATTACTCTA-
261 AATTAATCAAG-AATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTC-AG
** * * * *
90667719 GGAAAAAAATCAAACATATCGCAAAATAATG--GAAAAAGTGGAATAGGGGCTCACACGGTTGTG
324 GGACTAAAATGAAACATATCGCAAAATAGTGAAGAAACAGTGGAATAGGGGCTCACACGGCTGTG
* * * * *
90667782 TAGGGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTAAGTAACAT-GGTCGTGTAACTCACTTT
389 TGGGGAGGCCGTGTGA-GGGGTTTAGACCATGTTACTGAGTTACATAGCT-GTGTAACTCACTGT
* *
90667846 GACCGTGTGCAAATCAAAAATAACTTTCCAA
452 GACCGTGTGCAAATCAAAAA-AAATTCCCAA
* * * *
90667877 AACAAACCCAACTACGTGTAATGCATAATTGAATAACAATCATGTAGGATATCATGCTACACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * * * *
90667942 AAAATATCGGTAAAAGAATCATATTAATCATATAGCATAGCACGCTAAACAGTACAGTAACAGTA
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTACAGTAACAGTA
* * * *
90668007 ACGATTGTTTAATCAACATTCTTTAGTATAACTGTTTTGGATACACGATTTTCATGTAATCACTA
131 ACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTA
* *
90668072 TTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCATGAACATATAATC
196 TTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAATC
*
90668137 AATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTCAGGG
261 AATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTCAGGG
* * * * *
90668202 GCTAAAATGATACATATAGTAAAATAGTGAAGAAACAATGGAATAGGGGCTCACACGGCTGTGTG
326 ACTAAAATGAAACATATCGCAAAATAGTGAAGAAACAGTGGAATAGGGGCTCACACGGCTGTGTG
* *
90668267 GGGAGGCCGTGTGAGAGGGTTTAGACCATGTTACTCAGTTACATAGCTGTGTAACTCACCGTGAC
391 GGGAGGCCGTGTGAG-GGGTTTAGACCATGTTACTGAGTTACATAGCTGTGTAACTCACTGTGAC
*
90668332 TGTGTGCAAAT-AAAAAAAATTCCCAA
455 CGTGTGCAAATCAAAAAAAATTCCCAA
* * * *
90668358 AATAAACCCAACCACGTGTAATGCATAACTGAATACCAAACATGTAGCATGTCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
*
90668423 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCAAGCTAAACAGTAC-GATAACAGT
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTACAG-TAACAGT
* *
90668487 AACAATTATTTAATCAATATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACT
130 AACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACT
* * * *
90668552 ATTAACAATAGCAATCAAAGTATACTTACATGCAACCAATTTCATATCAATCACAATCATATAAT
195 ATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAAT
* * *
90668617 CAATTAATCAAGAATGAAGACTTAATCA-CA----A------T--CA--TAGCGAATTACTCAGG
260 CAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTCAGG
* * * *
90668667 GACTAAAATGAAACATATCGTAAAATAGT-AGAGAAACAGTGGAATAAGGACTCACACGACTGTG
325 GACTAAAATGAAACATATCGCAAAATAGTGA-AGAAACAGTGGAATAGGGGCTCACACGGCTGTG
* * * *
90668731 -GCGGGAAGCCGTGAGAGGGGATTTAGACCATGATACTGAGTTACATAGCCGTGTAACTCACTGT
389 TG-GGGAGGCCGTGTGAGGGG-TTTAGACCATGTTACTGAGTTACATAGCTGTGTAACTCACTGT
* * **** *
90668795 GACCGTGTGTAACTCGAAAATTTTTTTCCAA
452 GACCGTGTGCAAATC-AAAAAAAATTCCCAA
90668826 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * * * **
90668891 AAAATATCAGTAAGAGAATCATATCAATCATGTAGCATAACGTGCTAAATTGTACAGTAACAGTA
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTACAGTAACAGTA
* * * * *
90668956 GCAATTGTTTAATCAACATACTTTAGGATAACAG-TTTAGAGACATGATTTTCATGTAATCACTA
131 ACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTA
* * * * * *
90669020 TTAACAATACCAATCAATGCATGCTTACAGGTAACCAATATCATGTCAATCACGATCATATAATC
196 TTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAATC
* * * *
90669085 AATTAATCAAGATTGAAGTCTTAATCATGATTTTAGCGCTCTAACATGCAGGGAA-TATTCAGGG
261 AATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTCAGGG
* ** * * * * *
90669149 ACTAAAATGATACATATCATAAAATAATGGAGAAACAATGGAATAGGGGATCACACAGCTGTGTG
326 ACTAAAATGAAACATATCGCAAAATAGTGAAGAAACAGTGGAATAGGGGCTCACACGGCTGTGTG
* * ** ** * *
90669214 AGGAGGCCGTGTGAGAGGGTTTAGACCATGTTA-GGAGTTACACGGCTAAGTAACTCATTGTGAT
391 GGGAGGCCGTGTGAG-GGGTTTAGACCATGTTACTGAGTTACATAGCTGTGTAACTCACTGTGAC
* **
90669278 TGTGTGCAAATCGAAAAAAAATTCTTAA
455 CGTGTGCAAATC-AAAAAAAATTCCCAA
* * * * *
90669306 AACGAACCTAACCACGTGTAATGCATAACTGAATACCAAACATGTACCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* *
90669371 ACAATATCAGTAAGAGAATCATATCAATCATGGAGCATAGCATGCTAAACAGTATAGTAACAGTA
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAAC-----AGT-ACAGTA
* * *
90669436 ACAATAACAATTGTTTAATCAACATGATTTAGTATAACAGTTTTGGAGACACAATTTTCATGTAA
125 ACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAA
* * *
90669501 TCACTATTAACAATAGCAATCAAGGCATACTTACATGCAACCAATTTCATATCAATTACGATTAT
190 TCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCAT
* *
90669566 ATAATCAATTAATCAATAATGAAGTCTTAATCATGATTTTAAGGCTCTAACATGTAGGGAATTAC
255 ATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTAC
* * * ** * * ** *
90669631 TTAGGAACTAAAATGAAACATCTTACAAAATAATGGAGAAACAGTATAATA-GGGCTCACACAGC
320 TCAGGGACTAAAATGAAACATATCGCAAAATAGTGAAGAAACAGTGGAATAGGGGCTCACACGGC
* * *
90669695 TGTGTGGGGAGGCCGTGTGAGGGGGTTTAGACCGTGTTACTGAGTTACAT-GGTCGTGTAACTTA
385 TGTGTGGGGAGGCCGTGTGA-GGGGTTTAGACCATGTTACTGAGTTACATAGCT-GTGTAACTCA
*
90669759 CTGTGACCGTGTGCAAAT-AGAAAAAATTTCCCAA
448 CTGTGACCGTGTGCAAATCA-AAAAAAATTCCCAA
* * ** *
90669793 AACAAACCCAACCACTTGTAATGTATTTTTGAATACCAATGATGTAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* *
90669858 ACAATATAGGTAAGAGATTCATATCAATCATGTAGCATAGCATGCTAAACAGTATAATAACAGTA
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAG-----T-ACAGTA
* * * *
90669923 ACAGTAATAGTAACAATTGTTTAATCAACATGTTTTAGTATAACAGTTTTGAAGGCATGATTTTC
125 AC------AGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTC
* * * * * *
90669988 ATGTAATTACTATTAACAATAGCAACCAAGCCATGCTTATATGTAACCAATTTCATATCAATCAT
184 ATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCAC
* * * **
90670053 GATCCTATAATCAATTAATCACA-AATGATGTTTTAATCATGATTTTAGGGCTCTAACATGTAAA
249 GATCATATAATCAATTAATCA-AGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGG
* * * * * * *
90670117 GAATTACTCATGAAATAAAATGAAACATATCACAAAATAGTGGAGAAACAGTGTAATAGGGGTTC
313 GAATTACTCAGGGACTAAAATGAAACATATCGCAAAATAGTGAAGAAACAGTGGAATAGGGGCTC
* * * *** * * *
90670182 ATACGGTTGTCTAAAGAGGCCGTGTGAAGGGGTTTAGACCGTGTTAC--A-TGAC----C-GAGT
378 ACACGGCTGTGTGGGGAGGCCGTGTG-AGGGGTTTAGACCATGTTACTGAGTTACATAGCTGTGT
* *
90670239 AACTCACTGCGACCGTGTGCAAAT--AAAAAATTTCCCAA
442 AACTCACTGTGACCGTGTGCAAATCAAAAAAAATTCCCAA
* * * *
90670277 CACAAACCCAACCACGTGTAATGCATAACTGAATACCAATCATGTAGCATATCAAGCTAAATAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
** * *
90670342 ACAATATCGGTAAGAGAATCATATCAATCATACAGCATAGCATCCTAAACAGTACAGTAATAGTA
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTACAGTAACAGTA
* * *
90670407 ACAATTGTTTAATCAACATGCTTTAGTATAACAGATTTGGAGACACGATTTTCATGTAATTACTG
131 ACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTA
* *
90670472 TTAACAATAGCAATCAAGGCATGCTTACATGTAACCAATTTCATGTCAATCACGATCATATAATC
196 TTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAATC
* *
90670537 AATTAATCAAGATTGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTTAGGG
261 AATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTCAGGG
* * * * * *
90670602 ACAAAAATTATACATATCGTAAAATAGTGCAGAAACAGTAGAATAGGGGCTCACACGGCTGTGTG
326 ACTAAAATGAAACATATCGCAAAATAGTGAAGAAACAGTGGAATAGGGGCTCACACGGCTGTGTG
* * * *
90670667 AGGAGGCCTTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCCGTGTAACTCACTGTGAC
391 GGGAGGCCGTGTGA-GGGGTTTAGACCATGTTACTGAGTTACATAGCTGTGTAACTCACTGTGAC
* * *
90670732 CGTATGCAAATCGAAAATAACTTCCCAA
455 CGTGTGCAAATC-AAAAAAAATTCCCAA
* * *
90670760 AACAAACCCAACTACGTGTAATGCATAATTGAATTA-CAAACATGTAGCATATCATGTTAAACAG
1 AACAAACCCAACCACGTGTAATGCATAATTGAA-TACCAATCATGTAGCATATCATGCTAAACAG
*
90670824 TACATTATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTGTAGTAATAGT
65 TACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAAC-----------AGT
*
90670889 AACAGTAACGGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTT
119 -ACAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTT
* * * * * *
90670954 CATGTAATCACTATTGACAATACCAGTCAAAGCATGCTTACATGTAGCCAATTTCATATCAATCA
183 CATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCA
* ** *
90671019 CGATCATATAATCAATTAATCAAGAATGAAGGCTTAATCATGATTTTAAAGCTCTAACATTTA-G
248 CGATCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGG
* * * ** * * *
90671083 GAATTACTCAGGGACTAAAATGATAGATATC-CTAAAATTGCAAAGAAACAATGGAATAAGGACT
313 GAATTACTCAGGGACTAAAATGAAACATATCGC-AAAATAGTGAAGAAACAGTGGAATAGGGGCT
* * * * * * * *
90671147 CACACGGCTGTGTGCGGAGGCTGTGAGAGGGGCTTATACCGTATTACTAAGTTACATA-CTCGTG
377 CACACGGCTGTGTGGGGAGGCCGTGTGAGGGGTTTAGACCATGTTACTGAGTTACATAGCT-GTG
90671211 TAACTCACTGTGACCGTGTGCAAATC-AAAAAAATTCCCAA
441 TAACTCACTGTGACCGTGTGCAAATCAAAAAAAATTCCCAA
* * * * *
90671251 AACAAACCTAACAACGTGTAATGCATAATTTAATACCAGTCATATAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * * *
90671316 ACAATATCAGTAAGAGAATCATATCAATCATGTAACATAACATGCTAAACAGTACAGTAATAGTA
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTACAGTAACAGTA
* * *
90671381 ACAATTGTTTAATCAACATGCTTTAGTATAACAGGTTTGGAGACAAGATTTTCATGTAATCATTA
131 ACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTA
* * * * *
90671446 TTAACAATAGAAACCATGGCATGCTTACATGTAACCAATTTCATATCAATCACGATCATATAACC
196 TTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAATC
* ** * * *
90671511 AATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGCATAGAATGT-TTTAAG
261 AATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAAT-TACTCAGG
* * *
90671575 GACTAAAATGATACATATCGCAAAATAATGGAA-AAACAGTGGAATAGGGGCTCACACAGCTGTG
325 GACTAAAATGAAACATATCGCAAAATAGT-GAAGAAACAGTGGAATAGGGGCTCACACGGCTGTG
* * * ** * *
90671639 TAGGGAGGCCGTGTGAGGGATTTAAACTGTGTTACTGAGTTATATGGCTGTGTAACTCACTGTGA
389 TGGGGAGGCCGTGTGAGGGGTTTAGACCATGTTACTGAGTTACATAGCTGTGTAACTCACTGTGA
* * *
90671704 CTGTGTGCAAATTGAAAAAAAAATCCCAA
454 CCGTGTGCAAA-TCAAAAAAAATTCCCAA
* * * * *
90671733 AACAAACCTAGCCACATGTAAGGCATAATTAAATACCAATCATGTAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
*
90671798 ACAATATCAGTAAGAGAATCATATCAATCATGTAGCATAGCACGCTAAACAGTACAGTAACAGTA
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCA---T-----G--C--T---A--A
* * *
90671863 ACAGTAACAGTAACAGTAACAATTGTGTAATCAACATGTTTTAGTATAACAGTTTTGGAGATC-T
114 ACAGT-ACAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGA-CAC
* *
90671927 GATTTTCATGTAATCACTATTAACAATAGCAATCAAGGTATGCTTACATGCAACCAATTTCATAC
177 GATTTTCATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATAT
* *
90671992 CAATCACAATCATATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACA
242 CAATCACGATCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACA
* * * * * * * * * *
90672057 GGTAGGGAATTTCTCTGGGACTAAAATGATACATATCCCAAAACAGTGGAGATACAGTGTAGTAG
307 TGTAGGGAATTACTCAGGGACTAAAATGAAACATATCGCAAAATAGTGAAGAAACAGTGGAATAG
* * * *
90672122 GGGCACACACGGCTGTGTGGGGAGGCCGTGTGAGGGTGTTTAAACCGTGTTACTCAGTTACATAG
372 GGGCTCACACGGCTGTGTGGGGAGGCCGTGTGAGGG-GTTTAGACCATGTTACTGAGTTACATAG
* * * * *
90672187 CTGTCTAACTCATTATGACC-TAGTGCAAATCAAAAAATATTTTCCAA
436 CTGTGTAACTCACTGTGACCGT-GTGCAAATCAAAAAA-AATTCCCAA
* * *
90672234 AACAAACCCAACCACGTGTAATGCGTAATTGAATAACAATCATGTAGCATATCATGCTAAACTGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * *
90672299 ACAATATCGGTAAGAG-A--A-ATCAATCATGTAACATAGCAAGGTAAACAGTACTA-TAACAGT
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTAC-AGTAACAGT
* ** *
90672359 AACAATTGTTTAATCAACATGCTTTAATATAATTGTTTTAGAGACACGATTTTCATGTAATCACT
130 AACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACT
* * ** * * *
90672424 ATTAACAATATCAATCAATGCATATTTACATGCAACAAATTTCATACCAATCAAGATCATATAAT
195 ATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAAT
* * *
90672489 CAATTAATCAGGAGTGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTTAGG
260 CAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTCAGG
* * * * * * *
90672554 AACTAAAATGATACATAACCCAAAATAG-GAGAGAAACAGTGGAATAGGGGCTCACAAGCCTATG
325 GACTAAAATGAAACATATCGCAAAATAGTGA-AGAAACAGTGGAATAGGGGCTCACACGGCTGTG
* * * * * * * * *
90672618 TGGGGAGACCTTGTAAGGGGTCTAGACCATGTTACTCAATTACATAGCTATGTAACTTACTATGA
389 TGGGGAGGCCGTGTGAGGGGTTTAGACCATGTTACTGAGTTACATAGCTGTGTAACTCACTGTGA
* * *
90672683 CCGTATGCAAATCGAAAAACATTTCCCAA
454 CCGTGTGCAAATC-AAAAAAAATTCCCAA
* * * *
90672712 AACAAAACCAACCACGTGTAAGGCATACTTGAATACCAATCATGTAGCATATCATGCTAAATAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * * * * * **
90672777 AAAATAAT-AGTAACAG--T-A-A-C-A-CTTGT-G--TA--AT--AAAAAATGCTTTAGT-AC-
66 ACAAT-ATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACA-G-TACAGTAACA
* * * * *
90672825 --AACAATT-TTGGAGA-C-ACGAT--TTTCATGTA-ATCACTATT--A-ACA--A-TATCGAT-
128 GTAACAATTGTT-TA-ATCAAC-ATGCTTT-A-GTATAACAGTTTTGGAGACACGATTTTC-ATG
* * * * * ** * ** * * * *
90672875 CAA-GACGTGTTTAC-AT-GCAACCAATTTCATACCAATCATG--ATCATATAAT-AAATTAATC
187 TAATCAC-TATTAACAATAGCAATCAA-GGCATGCTTA-CATGCAACCA-AT-TTCATATCAATC
* * * * * * * *
90672934 AGGAACGA-A-AA-C--TTAATCATGATTTTAGAGCTCTAACAT-ATAGAGAATTACTCAGGG-A
247 ACGATC-ATATAATCAATTAATCAAGA-ATGA-AG-TCTTA-ATCAT---G-ATT--TTAGGGCT
* * * *** * ** * * *** *
90672992 CTAATATGATA--TATATTAC-AAAATAGT-GGA-GAAA-AAAT-G--AAATATTGGCCCACACA
301 CTAACATG-TAGGGA-ATTACTCAGGGACTAAAATGAAACATATCGCAAAATAGT-GAAGAAACA
* * * * * *
90673048 GAT-G--T-GTGG---AGA-GGCCGTGT---GA--------G-GGGGTTTAAACCGTGTTACTCA
363 G-TGGAATAGGGGCTCACACGGCTGTGTGGGGAGGCCGTGTGAGGGGTTTAGACCATGTTACTGA
* *
90673093 GTTACATAGCTGTGTAACTCACTATGACCGTGTGCAAATCAAAAAACATTTCCCAA
427 GTTACATAGCTGTGTAACTCACTGTGACCGTGTGCAAATCAAAAAA-AATTCCCAA
* * *
90673149 AATAAACCCAACCACGTGTAATGCATAATTAAATACCAATCATGTAGCATATCATGCTAAACAGG
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * * * *
90673214 ACAATATCGGTAAGAGAATAATATCAATAATGTAACATAGCAAGCTAAACAGTACAGTAACAATA
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTACAGTAACAGTA
* *
90673279 ACAATTGTTTAATCAACATGCTTTAGTGTAACAGTTTTGGAGACACGATTTTTATGTAATCACTA
131 ACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTA
* * * * * *
90673344 TTGACAATAGCAATTAAAGCATGCTTACACGCAACCAATTTCATATCAATCCCGATCATATAACC
196 TTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAATC
* * * *
90673409 AATTAATCAAGAATGAAGTCTTAATCATAATTTTAAGACTTTAACATGTAGGGAATTACTCAGGG
261 AATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTCAGGG
* ** *
90673474 ACTAAAATGAAACATATCGTAAAATAGTGGTGAAACAGTGGAATCA-GGACTCACACGGCTGTGT
326 ACTAAAATGAAACATATCGCAAAATAGTGAAGAAACAGTGGAAT-AGGGGCTCACACGGCTGTGT
* * * * *
90673538 GGGGAGGCCGTGAGAGTGGGTTTATACCGTGTTACTGAGTTACAT-GCCCGTGTAACTCACTATG
390 GGGGAGGCCGTGTGAG-GGGTTTAGACCATGTTACTGAGTTACATAG-CTGTGTAACTCACTGTG
90673602 ACCGTGTGCAAATCAAAAAAAATTCCCAA
453 ACCGTGTGCAAATCAAAAAAAATTCCCAA
* * * * *
90673631 AACAAACCCAACAATGTGAAATGCATAATTGAATATCAATCATGTATCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * * * *
90673696 ACAATATCAGTAAGCGAATCATATCAATCATGTAGCATAACATGCTAACCAGTATAGTAACAGTA
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTACAGTAACAGTA
* * *
90673761 ACAATTGTTTAATCAACATGCTTTAGTATAATAGGTTTGGAGACAAGATTTTCATGTAATCACTA
131 ACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTA
* *
90673826 TTAACAATAACAATCAATGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAA-C
196 TTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAATC
** * * * * *
90673890 TAATTAATCGGGAATGAAGTCTTAATTATGATTTTAGGGCTCTAACATGCATGGAAATATTCAGG
261 -AATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTCAGG
* ** * * * *
90673955 GACTAAAATGATACATATCAAAAAATAATGGAGAAACAGTGGAATAAGGGCTCACACAGCTGTGT
325 GACTAAAATGAAACATATCGCAAAATAGTGAAGAAACAGTGGAATAGGGGCTCACACGGCTGTGT
* * * * **
90674020 AGGAAGGCCGTGTGAAGGGTTTAAACTGTGTTACTGAGTTAC--A-C-G-GCTAACTCACTGTGA
390 GGGGAGGCCGTGTGAGGGGTTTAGACCATGTTACTGAGTTACATAGCTGTG-TAACTCACTGTGA
* *
90674080 CTGTGTGCAAACTGAAAAAAAATTCCCAA
454 CCGTGTGCAAA-TCAAAAAAAATTCCCAA
* * *
90674109 AACGAACCCAACCACATGTAATGCATAATTGAATACCAATCATATAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * ** * * *
90674174 ATAATATCGGTAAGGGAATCATATCAAT-AGTGTTTCATAGTATGCTAAACAATACAGTAATAGT
66 ACAATATCGGTAAGAGAATCATATCAATCA-TGTAGCATAGCATGCTAAACAGTACAGTAACAGT
* *
90674238 AATAGTAATAAT-TATGTAATCAACATGCTTTAGTATAACAGTTTTGGAGACATGATTTTCATGT
130 -A-A-CAAT--TGT-T-TAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGT
* * *
90674302 AATCACTATTAACAATAGCAATCAAGGCATGCTTACTTGCAACCGATTTCATATCAATCACGATT
188 AATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATC
* * * * *
90674367 ATATAATCAATTAATCAGGAATGAAGTCTTAATCATAATTTTGGGGCTCTAATAGGTAGGGAATT
253 ATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATT
* * * * *
90674432 ACTCAGGGACTAAAATGATACATATCACAAAATAATGGAGAAACAGGGGAATAGGGGCTCACACG
318 ACTCAGGGACTAAAATGAAACATATCGCAAAATAGTGAAGAAACAGTGGAATAGGGGCTCACACG
* * * * *
90674497 GTTGTGTGGGGAGGCTGTGTGAGGGGATTTAGACCGTGTTACTCAGTTACATAGTTGTGTAACTC
383 GCTGTGTGGGGAGGCCGTGTGAGGGG-TTTAGACCATGTTACTGAGTTACATAGCTGTGTAACTC
* * **** *
90674562 ACTATGACCGTGTACAAATCGAAAATTTTTTTCCAA
447 ACTGTGACCGTGTGCAAATC-AAAAAAAATTCCCAA
* * * * *
90674598 AACAAACCTAACCACATGTAATACATAATTAAATACCAATCATGTAGCATATCATGCTAAATAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * *
90674663 ACAATATCGGT-A-A-AA-GATATCAATCATGTAACATAGCAAGCTAAACAGTACAGTAACAGTA
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTACAGTAACAGTA
* * *
90674724 ACAATTGTTTAATCAACGTGCTTTAGTATAACAGTTTTAGAGACACGATTTTCAAGTAATCACTA
131 ACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTA
* * * * * * *
90674789 CTGACAATAGCAATTAATGCATGCTTACATGCAACCAATTTCATAACAATCATGATCATATAACC
196 TTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAATC
*
90674854 AATTAATCAAGAATGAAGTCTTAATCATGATTTTAGAGCTCTAACATGTAGGGAATTACTCAGGG
261 AATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTCAGGG
* * * * * * *
90674919 ACTAAAATGATAGATATC-CTAAAATTGTGAAGAAACAATGGAATAAGGACTCACACGGCTATGT
326 ACTAAAATGAAACATATCGC-AAAATAGTGAAGAAACAGTGGAATAGGGGCTCACACGGCTGTGT
* * * * * * * *
90674983 GCGGAGGTCGTGAGAGGGGTTTATACCGTGTTTCTAAGTTACATACCTGTGTAACTCACTGTGAC
390 GGGGAGGCCGTGTGAGGGGTTTAGACCATGTTACTGAGTTACATAGCTGTGTAACTCACTGTGAC
90675048 CGTGTGCAAAT-AAAAAAAATTCCCAA
455 CGTGTGCAAATCAAAAAAAATTCCCAA
* * * *
90675074 AACAAACCCAACAACGTGTAATGCATAATTTAATACCACTCATATAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
** *
90675139 ACAATATCAATAAGAGAATCATATCAATCATGTAGCATAACATGCTAAACAGTACAGTAACAGTA
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTACAGTAACAGTA
* *
90675204 ACAATTGTTTAATCAACAGGCTTTAGTATAACAGGTTTGGAGACACGATTTTCATGTAATCACTA
131 ACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTA
* * * * *
90675269 TTAATAGTATCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATTATAT-AGC
196 TTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAATC
** * * * *
90675333 AATTAATCGGGAATGAAGTCTTAATCATGATTTTAGGGCGCTAACATGCATGGAATTATTCAGGG
261 AATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTCAGGG
* * * * * * * * *
90675398 TCTAAAATGATACATATTGCAAAATAATGGAGAAACAGTGGAATAGGGACTCACACAGCTTTGTA
326 ACTAAAATGAAACATATCGCAAAATAGTGAAGAAACAGTGGAATAGGGGCTCACACGGCTGTGTG
* * ** ** * *
90675463 GGAAGGCCGTGTGAGGGGTTTAAACTGTGTTACTGAGTTACACGGCTTTGTAACTCACTGTGACT
391 GGGAGGCCGTGTGAGGGGTTTAGACCATGTTACTGAGTTACATAGCTGTGTAACTCACTGTGACC
90675528 GTGTGCAAAT-AGAAAAAAATTCCCAA
456 GTGTGCAAATCA-AAAAAAATTCCCAA
** * * * *
90675554 AACAAACTTAACCACGTGTAAGGCATAATTGTATACCAATCATTTAGCATTTCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * * * *
90675619 ACAATATAGGTAAGAGAATCATATGAATCATGTAGTATAGCATCCTAAACAGTATAGTAACAGTA
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTACAGTAACAGTA
* * * *
90675684 ACCATTGTGTAATCAACATGCTTTAGTATAACAGTTTTAGAGACACGATTATCATGTAATCACTA
131 ACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTA
* *
90675749 TTAACAATAGCAATCAAGGCATGCTTACATGCAATCAATTTCATACCAATCACGATCATATAATC
196 TTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAATC
* * * * **
90675814 AATTAATCAGGAATAAAGTCTTAATCATGATTTTAGGGCTCTAACTTGTAGGAAATTACTCAATG
261 AATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTCAGGG
* ** * * *
90675879 ACTAAAATGATACATATCAAAAAATAGTTG-AGAAACAGTGGAATATGGGCTCACATGGCTGCGT
326 ACTAAAATGAAACATATCGCAAAATAG-TGAAGAAACAGTGGAATAGGGGCTCACACGGCTGTGT
* * * * *
90675943 GAGGAGGCTGTGTGAGGGGGTTTAGACCATGTTACTTAGTTACATAGTTGTGTAACTCACTATGA
390 GGGGAGGCCGTGTGA-GGGGTTTAGACCATGTTACTGAGTTACATAGCTGTGTAACTCACTGTGA
* * **
90676008 CCGTGTGCAAATCGAAAGACGTTGCCCAA
454 CCGTGTGCAAATCAAAAAAAATT-CCCAA
* * *
90676037 AACAAACCCAACCACATGTAATACATTATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * * *
90676102 ATAATATCGGTAGGAG-A--A-ATCAATCATGTAACATAGCA-GACTAAACAGTACAGTAATAGT
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATG-CTAAACAGTACAGTAACAGT
* * * * *
90676162 AACAATTGTTTAATCAACATGCTTTAGTACAACAGTTTTCGTGACACAATTTTCATGTAATCATT
130 AACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACT
* * * * * * *
90676227 ATTGACAAAATCAATCAAAGCATGCTTCCGTGCATCCAATTTCATATCAATCACGATCATATAAT
195 ATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAAT
* * *
90676292 CAATTAATCAAGAATGAAGTCTTAATCATCATTTTAGGGTTCTAACATGTAAGGAATTACTCAGG
260 CAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTCAGG
* ** * * ** *
90676357 TACTAAAATGAAACATATCATAAAATAGTGGAGAAACAGTAGAATAAGAAG-TCACATGGCTGTG
325 GACTAAAATGAAACATATCGCAAAATAGTGAAGAAACAGTGGAAT-AGGGGCTCACACGGCTGTG
** * * * * * ** *
90676421 TAAGGAGGCCGTGAGAGGGGGTTTATATCGTGTTATTGAGTTACAT-GCCCCTGTAACTCACTAT
389 TGGGGAGGCCGTGTGA-GGGGTTTAGACCATGTTACTGAGTTACATAG-CTGTGTAACTCACTGT
***
90676485 GACCGTGTGCAAATCGAAAAACTTTTCCCAA
452 GACCGTGTGCAAATC-AAAAAAAATTCCCAA
* * * *
90676516 AACAAACCGAACAACATGTAATTCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * * *
90676581 ACAATATCAGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTATAGTAATAGTT
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTACAGTAACAGTA
* * *
90676646 ACAATTGTTTAATCAATATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCGCTG
131 ACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTA
* * *
90676711 TTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATATCAATCATGATCATATAATT
196 TTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAATC
* *
90676776 AATTAATTAAGAATGAAGTCATAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTCAGGG
261 AATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTCAGGG
* * * *
90676841 ACTAAAATGAAATATATTGCAAAATAGTGGAA-AAATAGTGGAATA-GTGCTCACACGGCTGTGT
326 ACTAAAATGAAACATATCGCAAAATAGT-GAAGAAACAGTGGAATAGGGGCTCACACGGCTGTGT
* * * * * *
90676904 -GGGAGGCCGTGAG-GGGGAATTTAAACCGTGGTACTGATTTACATGGCTGTGTAACTCACTGTG
390 GGGGAGGCCGTGTGAGGGG--TTTAGACCATGTTACTGAGTTACATAGCTGTGTAACTCACTGTG
* * *
90676967 ACTGTGTGCAAAT-AGAAAAATTTCCCAA
453 ACCGTGTGCAAATCAAAAAAAATTCCCAA
* * *
90676995 AACAAACCCAACCACATGCAATGCATAATTGAATACCAATCATGTACCATAGT-ATGCTAAACAG
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATA-TCATGCTAAACAG
90677059 TACAATA
65 TACAATA
90677066 ACAGTAACAA
Statistics
Matches: 9012, Mismatches: 1327, Indels: 690
0.82 0.12 0.06
Matches are distributed among these distances:
436 7 0.00
437 132 0.01
439 1 0.00
440 1 0.00
441 1 0.00
442 1 0.00
443 1 0.00
444 3 0.00
446 2 0.00
447 2 0.00
449 10 0.00
450 5 0.00
451 4 0.00
452 1 0.00
453 16 0.00
454 21 0.00
455 10 0.00
456 15 0.00
457 32 0.00
458 34 0.00
459 23 0.00
460 23 0.00
461 34 0.00
462 34 0.00
463 18 0.00
464 11 0.00
465 24 0.00
466 147 0.02
467 110 0.01
468 163 0.02
469 7 0.00
470 11 0.00
471 2 0.00
472 260 0.03
473 2 0.00
474 1 0.00
475 7 0.00
476 79 0.01
477 26 0.00
478 316 0.04
479 1322 0.15
480 716 0.08
481 904 0.10
482 570 0.06
483 591 0.07
484 366 0.04
485 62 0.01
486 70 0.01
487 305 0.03
488 77 0.01
489 102 0.01
490 4 0.00
491 116 0.01
492 45 0.00
493 618 0.07
494 151 0.02
495 179 0.02
496 1 0.00
497 60 0.01
498 4 0.00
499 348 0.04
500 261 0.03
501 125 0.01
504 1 0.00
505 14 0.00
509 2 0.00
510 25 0.00
511 236 0.03
512 140 0.02
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (481 bp):
AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTACAGTAACAGTA
ACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTA
TTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAATC
AATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTCAGGG
ACTAAAATGAAACATATCGCAAAATAGTGAAGAAACAGTGGAATAGGGGCTCACACGGCTGTGTG
GGGAGGCCGTGTGAGGGGTTTAGACCATGTTACTGAGTTACATAGCTGTGTAACTCACTGTGACC
GTGTGCAAATCAAAAAAAATTCCCAA
Found at i:90671862 original size:6 final size:6
Alignment explanation
Indices: 90671845--90671883 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
90671835 TAGCACGCTA
90671845 AACAGT -ACAGT AACAGT AACAGT AACAGT AACAGT AACA
1 AACAGT AACAGT AACAGT AACAGT AACAGT AACAGT AACA
90671884 ATTGTGTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 5 0.16
6 27 0.84
ACGTcount: A:0.51, C:0.18, G:0.15, T:0.15
Consensus pattern (6 bp):
AACAGT
Found at i:90672412 original size:979 final size:975
Alignment explanation
Indices: 90665893--90677065 Score: 11416
Period size: 979 Copynumber: 11.6 Consensus size: 975
90665883 TTCGTCACCC
* *
90665893 AACAAACCCAACCATGTGTAATGCATAATTGAATATCAATCATGTAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* *
90665958 ACAATATCGGTAAGAAAATCATATCAATCATGTAGCAT---A-GC--A-AG-C-T-A--AACAGT
66 ACAATATCAGTAAGAGAATCATATCAATCATGTAGCATAGCACGCTAACAGTCATAAGTAACAGT
** *
90666011 -ACAGTAACAGTAACAATTGTTTAATCAACATAATTTAGTATAATAGTTTTGGAGACACGATTTT
131 AACAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTT
* * **
90666075 TATGTAATCACTATTAACAATAGCAATCAAGACATG-TTTTATGCAACCAATTTCATATCAATCA
196 CATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCA
* * * *
90666139 CGATCATATAATCAATTAATCAGGAATAAAGACTTAATCATGACTTTAGGGCACTAACATGTAGG
261 CGATCATATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGG
* * * * *
90666204 GAATTATTCAT-GGACTAAAATGAAACATATAGCAAAATAGTGGAGTAACAGTGAAATAGGGGCT
326 GAATTACTC-TGGGACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCT
* * **
90666268 CACACGACTGTGTGGGGAGGTCGTGTGAGGCGGTTTAGACTATGTTACTAAGTTACACGGCTGTG
390 CACACGGCTGTGTGGGGAGGCCGTGTGAGG-GGTTTAGACCGTGTTAC-----T-CA-----GT-
* *
90666333 TAACTCATTATGACTGTGTAACTCACTATGACC-ATGTGCAAATAAAAAAAAATTTCCC-AAACA
442 T-A--CA-TA-G-CTGTGTAACTCACTGTGACCTA-GTGCAAAT-CAAAAAAATTTCCCAAAACA
* *
90666396 AACCCAACCACATGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAATACAA
499 AACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGTACAA
* * *
90666461 TATAGGTAAGAGAATCATATCAATCATGTAGTATAGCAAGCTAAACAGTACAATAATAGTAACAG
564 TATCGGTAAGAGAA-CATATCAATCATGTAGCATAGCATGCTAAACAGTAC------AGTAAC--
*
90666526 TAATAGTAAAAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGT
620 ----AGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGT
* *
90666591 AATCACTATTAACAATAGCAATCAAGGCATGCTTACATGGAACCAATTTCATATCAATTACGATC
681 AATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATC
* *
90666656 ATATAATCAATTAATCAATAATGAAGTCTTAATCATGATTTTATGGCTCTAACATGTA-AGGAAT
746 ATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGA-GAAT
* * * * * *
90666720 TATTTAGGGATTAAAATGAAACATCTCGTAAAATAATGGAGAAACAGTGGAATA-GGGCTCACAT
810 TACTTAAGGACTAAAATGAAACATATCGCAAAATAATGGAGAAACAGTGGAATAGGGGCTCACAC
* * * * **
90666784 GGCTGTGTGAAGAGGCCGTGTGAGGGGGTTTAGACCGTGTTACTGAGTTATATGGCCATGTAACT
875 AGCTGTGTG-GGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCTGTGTAACT
* * * * *
90666849 CATTGTGACCATATGCAAAT-AAAAAAAATTTCTCAA
939 CACTGTGACCGTGTGCAAATCGAAAAAAATTTCCCAA
* * * * *
90666885 AACAAACCTAACCATGTGTAATGCATATTTGAATACCAATTATGTGGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * *
90666950 -CTAATAT-AGGTAAGAGATTCATATCAATCATGTAGCATAGCATGCTAACCAGT-AT-AGCAAC
66 AC-AATATCA-GTAAGAGAATCATATCAATCATGTAGCATAGCACGCTAA-CAGTCATAAGTAAC
* * * * * *
90667011 AGTAACAATAATAGTAACAATTTTTTAATCAACATGCTTTAGTATAAAAGTTTTGAAGACAGGAT
128 AGTAACAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGAT
* * * * *
90667076 TTTCATGTAATTACTATTAACAATACCAATCAAGGCACGCTTACATGCGACTAATTTCATATCAA
193 TTTCATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAA
* * * * *
90667141 TCACGATCATATAATCAATTAATCATGAATGAAGTTTTAATTATGATTTTAGGGCTCAAACATAT
258 TCACGATCATATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGT
* * * **
90667206 AGGGAATTACTCAT-TGACTAAAATGAAACATATCGCAAAATAGTGGAAAAACAGTACAATAGGG
323 AGGGAATTACTC-TGGGACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGG
* * * * *
90667270 GTTCACACGGCAGTGTAGGGAGACCGTGTG-GGGGTTTAGACCGTGTTACTGAGTTACATGACCG
387 GCTCACACGGCTGTGTGGGGAGGCCGTGTGAGGGGTTTAGACCGTGTTACTCAGTTACAT-----
* *
90667334 AGTAACTCACTATGACCATGTAAATCATTGTGACC-ATGTGCAAATCGAAAAAAATTTCCCAAAA
447 AG-------C--TG----TGTAACTCACTGTGACCTA-GTGCAAATC-AAAAAAATTTCCCAAAA
* * * * *
90667398 CAAACTCAACCATGTGTAATGCGTAATTGAATACCAATCATGTAGCAAATCATGCTAAACAATAC
497 CAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGTAC
* * * * * *
90667463 ATTATCGGTAAGAGAATCATATCAATTATGTAGCATAGCATGCTACATAGTACAGTAATAGTAAT
562 AATATCGGTAAGAGAA-CATATCAATCATGTAGCATAGCATGCTAAACAGTACAGTAACAGTAAC
* *
90667528 AATTGTTTAATTAACATGCTTTAGTATAACAGTTTTGGAGACACAATTTTCATGTAATCACTATT
626 AATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTATT
* * *
90667593 AACAATAACAATCAAGGCATGCTTATATGCAACCAATTTCATATCGATCACGATCATATAATCAA
691 AACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAATCAA
* * *
90667658 TTAATC-AGTAATGAAATCTTAATTATAATTTTAGGGCTCTAACATGTAGAGAATTACTCT-AGG
756 TTAATCAAG-AATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGAGAATTACT-TAAGG
** * * *
90667721 AAAAAAATCAAACATATCGCAAAATAATGGA-AAA-AGTGGAATAGGGGCTCACACGGTTGTGTA
819 ACTAAAATGAAACATATCGCAAAATAATGGAGAAACAGTGGAATAGGGGCTCACACAGCTGTGT-
* * *
90667784 GGGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTAAGTAACATGG-TCGTGTAACTCACTTTGA
883 GGGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCT-GTGTAACTCACTGTGA
90667848 CCGTGTGCAAATC-AAAAATAACTTT-CCAA
947 CCGTGTGCAAATCGAAAAA-AA-TTTCCCAA
* * * *
90667877 AACAAACCCAACTACGTGTAATGCATAATTGAATAACAATCATGTAGGATATCATGCTACACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * * * *
90667942 AAAATATCGGTAAAAGAATCATATTAATCATATAGCATAGCACGCTAA-A--C---AGT-ACAGT
66 ACAATATCAGTAAGAGAATCATATCAATCATGTAGCATAGCACGCTAACAGTCATAAGTAACAGT
* * *
90668000 AACAGTAAC-G-----ATTGTTTAATCAACATTCTTTAGTATAACTGTTTTGGATACACGATTTT
131 AACAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTT
90668059 CATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCA
196 CATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCA
* *
90668124 TGAACATATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGG
261 CGATCATATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGG
* * * * * *
90668189 GAATTACTCAGGGGCTAAAATGATACATATAGTAAAATAGTGAAGAAACAATGGAATAGGGGCTC
326 GAATTACTCTGGGACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTC
*
90668254 ACACGGCTGTGTGGGGAGGCCGTGTGAGAGGGTTTAGACCATGTTACTCAGTTACATAGCTGTGT
391 ACACGGCTGTGTGGGGAGGCCGTGTGAG-GGGTTTAGACCGTGTTACTCAGTTACATAGCTGTGT
* * * *
90668319 AACTCACCGTGA-CTGTGTGCAAAT-AAAAAAAATTCCCAAAATAAACCCAACCACGTGTAATGC
455 AACTCACTGTGACCT-AGTGCAAATCAAAAAAATTTCCCAAAACAAACCCAACCACGTGTAATGC
* * *
90668382 ATAACTGAATACCAAACATGTAGCATGTCATGCTAAACAGTACAATATCGGTAAGAGAATCATAT
519 ATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGTACAATATCGGTAAGAGAA-CATAT
* * *
90668447 CAATCATGTAGCATAGCAAGCTAAACAGTAC-GATAACAGTAACAATTATTTAATCAATATGCTT
583 CAATCATGTAGCATAGCATGCTAAACAGTACAG-TAACAGTAACAATTGTTTAATCAACATGCTT
* * *
90668511 TAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTATTAACAATAGCAATCAAAGTATA
647 TAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTATTAACAATAGCAATCAAGGCATG
* *
90668576 CTTACATGCAACCAATTTCATATCAATCACAATCATATAATCAATTAATCAAGAATGAAGACTTA
712 CTTACATGCAACCAATTTCATATCAATCACGATCATATAATCAATTAATCAAGAATGAAGTCTTA
* * * * *
90668641 ATCA-CA----A------T--CA--TAGCGAATTACTCAGGGACTAAAATGAAACATATCGTAAA
777 ATCATGATTTTAGGGCTCTAACATGTAGAGAATTACTTAAGGACTAAAATGAAACATATCGCAAA
* * * * * * * *
90668691 ATAGTAGAGAAACAGTGGAATAAGGACTCACAC-GACTGTGGCGGGAAGCCGTGAGAGGGGATTT
842 ATAATGGAGAAACAGTGGAATAGGGGCTCACACAG-CTGT-GTGGGAGGCCGTGTGAGGGGGTTT
* * * * * ***
90668755 AGACCATGATACTGAGTTACATAGCCGTGTAACTCACTGTGACCGTGTGTAACTCGAAAATTTTT
905 AGACCATGTTACTGAGTTACATGGCTGTGTAACTCACTGTGACCGTGTGCAAATCGAAAAAAATT
*
90668820 TTCCAA
970 TCCCAA
90668826 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* **
90668891 AAAATATCAGTAAGAGAATCATATCAATCATGTAGCATA--ACG-T----G-C-T-A--AATTGT
66 ACAATATCAGTAAGAGAATCATATCAATCATGTAGCATAGCACGCTAACAGTCATAAGTAACAGT
* * * * *
90668944 -ACAGTAACAGTAGCAATTGTTTAATCAACATACTTTAGGATAACAG-TTTAGAGACATGATTTT
131 AACAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTT
* * * * * *
90669007 CATGTAATCACTATTAACAATACCAATCAATGCATGCTTACAGGTAACCAATATCATGTCAATCA
196 CATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCA
* * * *
90669072 CGATCATATAATCAATTAATCAAGATTGAAGTCTTAATCATGATTTTAGCGCTCTAACATGCAGG
261 CGATCATATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGG
* * ** * * *
90669137 GAA-TATTCAGGGACTAAAATGATACATATCATAAAATAATGGAGAAACAATGGAATAGGGGATC
326 GAATTACTCTGGGACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTC
* * * ** ** **
90669201 ACACAGCTGTGTGAGGAGGCCGTGTGAGAGGGTTTAGACCATGTTA-GGAGTTACACGGCTAAGT
391 ACACGGCTGTGTGGGGAGGCCGTGTGAG-GGGTTTAGACCGTGTTACTCAGTTACATAGCTGTGT
* * * * ** * *
90669265 AACTCATTGTGA-TTGTGTGCAAATCGAAAAAAAATTCTTAAAACGAACCTAACCACGTGTAATG
455 AACTCACTGTGACCT-AGTGCAAATC-AAAAAAATTTCCCAAAACAAACCCAACCACGTGTAATG
* * * *
90669329 CATAACTGAATACCAAACATGTACCATATCATGCTAAACAGTACAATATCAGTAAGAGAATCATA
518 CATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGTACAATATCGGTAAGAGAA-CATA
* *
90669394 TCAATCATGGAGCATAGCATGCTAAACAGTATAGTAACAGTAACAATAACAATTGTTTAATCAAC
582 TCAATCATGTAGCATAGCATGCTAAAC-----AGT-ACAGTAACAGTAACAATTGTTTAATCAAC
* *
90669459 ATGATTTAGTATAACAGTTTTGGAGACACAATTTTCATGTAATCACTATTAACAATAGCAATCAA
641 ATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTATTAACAATAGCAATCAA
* * * *
90669524 GGCATACTTACATGCAACCAATTTCATATCAATTACGATTATATAATCAATTAATCAATAATGAA
706 GGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAATCAATTAATCAAGAATGAA
* * *
90669589 GTCTTAATCATGATTTTAAGGCTCTAACATGTAGGGAATTACTT-AGGAACTAAAATGAAACATC
771 GTCTTAATCATGATTTTAGGGCTCTAACATGTAGAGAATTACTTAAGG-ACTAAAATGAAACATA
** **
90669653 TTACAAAATAATGGAGAAACAGTATAATA-GGGCTCACACAGCTGTGTGGGGAGGCCGTGTGAGG
835 TCGCAAAATAATGGAGAAACAGTGGAATAGGGGCTCACACAGCTGTGT-GGGAGGCCGTGTGAGG
* * *
90669717 GGGTTTAGACCGTGTTACTGAGTTACATGG-TCGTGTAACTTACTGTGACCGTGTGCAAATAG-A
899 GGGTTTAGACCATGTTACTGAGTTACATGGCT-GTGTAACTCACTGTGACCGTGTGCAAATCGAA
90669780 AAAAATTTCCCAA
963 AAAAATTTCCCAA
* * ** *
90669793 AACAAACCCAACCACTTGTAATGTATTTTTGAATACCAATGATGTAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* *
90669858 ACAATAT-AGGTAAGAGATTCATATCAATCATGTAGCATAGCATGCTAAACAGT-ATAA-TAACA
66 ACAATATCA-GTAAGAGAATCATATCAATCATGTAGCATAGCACGCT-AACAGTCATAAGTAACA
* * * * *
90669920 GTAACAGTAATAGTAACAATTGTTTAATCAACATGTTTTAGTATAACAGTTTTGAAGGCATGATT
129 GTAACAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATT
* * * * *
90669985 TTCATGTAATTACTATTAACAATAGCAACCAAGCCATGCTTATATGTAACCAATTTCATATCAAT
194 TTCATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAAT
* * ** * *
90670050 CATGATCCTATAATCAATTAATCACAAATGATGTTTTAATCATGATTTTAGGGCTCTAACATGTA
259 CACGATCATATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTA
** * * * * *
90670115 AAGAATTACTCAT-GAAATAAAATGAAACATATCACAAAATAGTGGAGAAACAGTGTAATAGGGG
324 GGGAATTACTC-TGGGACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGG
* * * * *** *
90670179 TTCATACGGTTGTCTAAAGAGGCCGTGTGAAGGGGTTTAGACCGTGTTA--CA-TGAC----C-G
388 CTCACACGGCTGTGTGGGGAGGCCGTGTG-AGGGGTTTAGACCGTGTTACTCAGTTACATAGCTG
* * *
90670236 AGTAACTCACTGCGACCGT-GTGCAAAT--AAAAAATTTCCCAACACAAACCCAACCACGTGTAA
452 TGTAACTCACTGTGACC-TAGTGCAAATCAAAAAAATTTCCCAAAACAAACCCAACCACGTGTAA
* * *
90670298 TGCATAACTGAATACCAATCATGTAGCATATCAAGCTAAATAGTACAATATCGGTAAGAGAATCA
516 TGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGTACAATATCGGTAAGAGAA-CA
** * *
90670363 TATCAATCATACAGCATAGCATCCTAAACAGTACAGTAATAGTAACAATTGTTTAATCAACATGC
580 TATCAATCATGTAGCATAGCATGCTAAACAGTACAGTAACAGTAACAATTGTTTAATCAACATGC
* * *
90670428 TTTAGTATAACAGATTTGGAGACACGATTTTCATGTAATTACTGTTAACAATAGCAATCAAGGCA
645 TTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTATTAACAATAGCAATCAAGGCA
* * *
90670493 TGCTTACATGTAACCAATTTCATGTCAATCACGATCATATAATCAATTAATCAAGATTGAAGTCT
710 TGCTTACATGCAACCAATTTCATATCAATCACGATCATATAATCAATTAATCAAGAATGAAGTCT
* * * * * *
90670558 TAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTTAGGGACAAAAATTATACATATCGTA
775 TAATCATGATTTTAGGGCTCTAACATGTAGAGAATTACTTAAGGACTAAAATGAAACATATCGCA
* * * * *
90670623 AAATAGTGCAGAAACAGTAGAATAGGGGCTCACACGGCTGTGTGAGGAGGCCTTGTGAGGGGGTT
840 AAATAATGGAGAAACAGTGGAATAGGGGCTCACACAGCTGTGTG-GGAGGCCGTGTGAGGGGGTT
* * * *
90670688 TAGACCATGTTACTGAGTTACATGGCCGTGTAACTCACTGTGACCGTATGCAAATCGAAAATAAC
904 TAGACCATGTTACTGAGTTACATGGCTGTGTAACTCACTGTGACCGTGTGCAAATCGAAAAAAAT
90670753 TTCCCAA
969 TTCCCAA
* * *
90670760 AACAAACCCAACTACGTGTAATGCATAATTGAATTA-CAAACATGTAGCATATCATGTTAAACAG
1 AACAAACCCAACCACGTGTAATGCATAATTGAA-TACCAATCATGTAGCATATCATGCTAAACAG
* * * * *
90670824 TACATTATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGT-GT-AGTAATA
65 TACAATATCAGTAAGAGAATCATATCAATCATGTAGCATAGCACGCT-AACAGTCATAAGTAACA
*
90670887 GTAACAGTAACGGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATT
129 GTAACAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATT
* * * * * *
90670952 TTCATGTAATCACTATTGACAATACCAGTCAAAGCATGCTTACATGTAGCCAATTTCATATCAAT
194 TTCATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAAT
* * ** *
90671017 CACGATCATATAATCAATTAATCAAGAATGAAGGCTTAATCATGATTTTAAAGCTCTAACATTTA
259 CACGATCATATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTA
* * * *** * * *
90671082 -GGAATTACTCAGGGACTAAAATGATAGATATC-CTAAAATTGCAAAGAAACAATGGAATAAGGA
324 GGGAATTACTCTGGGACTAAAATGATACATATCGC-AAAATAGTGGAGAAACAGTGGAATAGGGG
* * * * * * *
90671145 CTCACACGGCTGTGTGCGGAGGCTGTGAGAGGGGCTTATACCGTATTACTAAGTTACATA-CTCG
388 CTCACACGGCTGTGTGGGGAGGCCGTGTGAGGGGTTTAGACCGTGTTACTCAGTTACATAGCT-G
* *
90671209 TGTAACTCACTGTGACCGT-GTGCAAATCAAAAAAA-TTCCCAAAACAAACCTAACAACGTGTAA
452 TGTAACTCACTGTGACC-TAGTGCAAATCAAAAAAATTTCCCAAAACAAACCCAACCACGTGTAA
* * * *
90671272 TGCATAATTTAATACCAGTCATATAGCATATCATGCTAAACAGTACAATATCAGTAAGAGAATCA
516 TGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGTACAATATCGGTAAGAGAA-CA
* * *
90671337 TATCAATCATGTAACATAACATGCTAAACAGTACAGTAATAGTAACAATTGTTTAATCAACATGC
580 TATCAATCATGTAGCATAGCATGCTAAACAGTACAGTAACAGTAACAATTGTTTAATCAACATGC
* * * * * *
90671402 TTTAGTATAACAGGTTTGGAGACAAGATTTTCATGTAATCATTATTAACAATAGAAACCATGGCA
645 TTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTATTAACAATAGCAATCAAGGCA
* *
90671467 TGCTTACATGTAACCAATTTCATATCAATCACGATCATATAACCAATTAATCAAGAATGAAGTCT
710 TGCTTACATGCAACCAATTTCATATCAATCACGATCATATAATCAATTAATCAAGAATGAAGTCT
* * * *
90671532 TAATCATGATTTTAGGGCTCTAACATGCATAGAATGT-TTTAAGGACTAAAATGATACATATCGC
775 TAATCATGATTTTAGGGCTCTAACATGTAGAGAAT-TACTTAAGGACTAAAATGAAACATATCGC
* *
90671596 AAAATAATGGAAAAACAGTGGAATAGGGGCTCACACAGCTGTGTAGGGAGGCCGTGTGA-GGGAT
839 AAAATAATGGAGAAACAGTGGAATAGGGGCTCACACAGCTGTGT-GGGAGGCCGTGTGAGGGGGT
* ** * * *
90671660 TTAAACTGTGTTACTGAGTTATATGGCTGTGTAACTCACTGTGACTGTGTGCAAATTGAAAAAAA
903 TTAGACCATGTTACTGAGTTACATGGCTGTGTAACTCACTGTGACCGTGTGCAAATCGAAAAAAA
**
90671725 AATCCCAA
968 TTTCCCAA
* * * * *
90671733 AACAAACCTAGCCACATGTAAGGCATAATTAAATACCAATCATGTAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
90671798 ACAATATCAGTAAGAGAATCATATCAATCATGTAGCATAGCACGCTAAACAGTACAGTAACAGTA
66 ACAATATCAGTAAGAGAATCATATCAATCATGTAGCATAGCACGCT-AACAGT-CA-T-A-AGTA
* * *
90671863 ACAGTAACAGTAACAGTAACAATTGTGTAATCAACATGTTTTAGTATAACAGTTTTGGAGATC-T
126 ACAGTAACAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGA-CAC
* *
90671927 GATTTTCATGTAATCACTATTAACAATAGCAATCAAGGTATGCTTACATGCAACCAATTTCATAC
190 GATTTTCATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATAT
*
90671992 CAATCACAATCATATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACA
255 CAATCACGATCATATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACA
* * * * * * *
90672057 GGTAGGGAATTTCTCTGGGACTAAAATGATACATATCCCAAAACAGTGGAGATACAGTGTAGTAG
320 TGTAGGGAATTACTCTGGGACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAG
* *
90672122 GGGCACACACGGCTGTGTGGGGAGGCCGTGTGAGGGTGTTTAAACCGTGTTACTCAGTTACATAG
385 GGGCTCACACGGCTGTGTGGGGAGGCCGTGTGAGGG-GTTTAGACCGTGTTACTCAGTTACATAG
* * * *
90672187 CTGTCTAACTCATTATGACCTAGTGCAAATCAAAAAATATTTTCCAAAACAAACCCAACCACGTG
449 CTGTGTAACTCACTGTGACCTAGTGCAAATCAAAAAA-ATTTCCCAAAACAAACCCAACCACGTG
* * *
90672252 TAATGCGTAATTGAATAACAATCATGTAGCATATCATGCTAAACTGTACAATATCGGTAAGAG-A
513 TAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGTACAATATCGGTAAGAGAA
* * *
90672316 -A-ATCAATCATGTAACATAGCAAGGTAAACAGTACTA-TAACAGTAACAATTGTTTAATCAACA
578 CATATCAATCATGTAGCATAGCATGCTAAACAGTAC-AGTAACAGTAACAATTGTTTAATCAACA
* ** * * *
90672378 TGCTTTAATATAATTGTTTTAGAGACACGATTTTCATGTAATCACTATTAACAATATCAATCAAT
642 TGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTATTAACAATAGCAATCAAG
** * * * * *
90672443 GCATATTTACATGCAACAAATTTCATACCAATCAAGATCATATAATCAATTAATCAGGAGTGAAG
707 GCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAATCAATTAATCAAGAATGAAG
* * *
90672508 TCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTT-AGGAACTAAAATGATACATAA
772 TCTTAATCATGATTTTAGGGCTCTAACATGTAGAGAATTACTTAAGG-ACTAAAATGAAACATAT
* * * * * *
90672572 CCCAAAAT-AGGAGAGAAACAGTGGAATAGGGGCTCACA-AGCCTATGTGGGGAGACCTTGT-AA
836 CGCAAAATAATG-GAGAAACAGTGGAATAGGGGCTCACACAG-CTGTGT-GGGAGGCCGTGTGAG
* * * * * * * *
90672634 GGGGTCTAGACCATGTTACTCAATTACATAGCTATGTAACTTACTATGACCGTATGCAAATCGAA
898 GGGGTTTAGACCATGTTACTGAGTTACATGGCTGTGTAACTCACTGTGACCGTGTGCAAATCGAA
*
90672699 AAACATTTCCCAA
963 AAAAATTTCCCAA
* * * *
90672712 AACAAAACCAACCACGTGTAAGGCATACTTGAATACCAATCATGTAGCATATCATGCTAAATAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * * * * *** * * * ** *
90672777 AAAATAAT-AGTAACAGTAA-CACTTGTGTAATAAAAAATGCTTTAGTA--C-AACAATTTTGGA
66 ACAAT-ATCAGTAAGAG-AATCA--TAT-CAATCATGTA-GC-ATAGCACGCTAACAGTCAT-AA
* ** * * * * * *
90672837 G-ACACGATTTTCATGTAATCACTATTAACAATATCGATCAA--GACGTG-TTTA-CATGCAACC
123 GTA-AC-AGTAACA-GT-A--AC-AGTAACAAT-T-GTTTAATCAACATGCTTTAGTAT--AA-C
* * * * * ** * * *** *
90672897 A-ATTT-CATAC-C-A--ATCATG--ATCA-TA-TAATAA-ATTAATC-AGGAACGAAAAC-T-T
176 AGTTTTGGAGACACGATTTTCATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGC
* * * * * *
90672948 AATCATGATTTTAGAGC--TCTA--A-CATATAGA-GAATTACTCAGG---G-A--C-TAAT-AT
241 AACCA--ATTTCATATCAATC-ACGATCATATA-ATCAATTAATCAGGAATGAAGTCTTAATCAT
* * * *
90672999 GATATATA----T-T-ACA---A---AA-TA--GTGGAGA-AAAAATGA-A-ATATTGGCCCACA
302 GAT-TTTAGGGCTCTAACATGTAGGGAATTACTCTGG-GACTAAAATGATACATA-T--CGCA-A
* ** * * * * * * ** *
90673046 CAGATGTGTGGAGAGGCCGTGTG-A-GGGGGTTTAAAC--C-GTGT---TACTCAGT-T-A----
361 -A-AT-AGTGGAGAAACAGTG-GAATAGGGGCTCACACGGCTGTGTGGGGAGGCCGTGTGAGGGG
** * * *
90673097 CATAG-CTGTGTAACTC----AC-TA----TG--AC-C-GTGT--------GCAAATCAAAAAAC
422 TTTAGACCGTGTTACTCAGTTACATAGCTGTGTAACTCACTGTGACCTAGTGCAAATCAAAAAA-
* *
90673140 ATTTCCCAAAATAAACCCAACCACGTGTAATGCATAATTAAATACCAATCATGTAGCATATCATG
486 ATTTCCCAAAACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATG
* * * * *
90673205 CTAAACAGGACAATATCGGTAAGAGAATAATATCAATAATGTAACATAGCAAGCTAAACAGTACA
551 CTAAACAGTACAATATCGGTAAGAGAA-CATATCAATCATGTAGCATAGCATGCTAAACAGTACA
* * *
90673270 GTAACAATAACAATTGTTTAATCAACATGCTTTAGTGTAACAGTTTTGGAGACACGATTTTTATG
615 GTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATG
* * * * *
90673335 TAATCACTATTGACAATAGCAATTAAAGCATGCTTACACGCAACCAATTTCATATCAATCCCGAT
680 TAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGAT
* * * * * *
90673400 CATATAACCAATTAATCAAGAATGAAGTCTTAATCATAATTTTAAGACTTTAACATGTAGGGAAT
745 CATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGAGAAT
* * * * * *
90673465 TACTCAGGGACTAAAATGAAACATATCGTAAAATAGTGGTGAAACAGTGGAATCA-GGACTCACA
810 TACTTAAGGACTAAAATGAAACATATCGCAAAATAATGGAGAAACAGTGGAAT-AGGGGCTCACA
* * * * * * *
90673529 CGGCTGTGTGGGGAGGCCGTGAGAGTGGGTTTATACCGTGTTACTGAGTTACATGCCCGTGTAAC
874 CAGCTGTGT-GGGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCTGTGTAAC
* *
90673594 TCACTATGACCGTGTGCAAATC-AAAAAAAATTCCCAA
938 TCACTGTGACCGTGTGCAAATCGAAAAAAATTTCCCAA
* * * * *
90673631 AACAAACCCAACAATGTGAAATGCATAATTGAATATCAATCATGTATCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * *
90673696 ACAATATCAGTAAGCGAATCATATCAATCATGTAGCATAACATGCTAAC---C---AGT---A-T
66 ACAATATCAGTAAGAGAATCATATCAATCATGTAGCATAGCACGCTAACAGTCATAAGTAACAGT
* * *
90673751 ---AGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAATAGGTTTGGAGACAAGATTTT
131 AACAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTT
* *
90673813 CATGTAATCACTATTAACAATAACAATCAATGCATGCTTACATGCAACCAATTTCATATCAATCA
196 CATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCA
* * * *
90673878 CGATCATATAA-CTAATTAATCGGGAATGAAGTCTTAATTATGATTTTAGGGCTCTAACATGCAT
261 CGATCATATAATC-AATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAG
* * * ** * *
90673942 GGAAATATTCAGGGACTAAAATGATACATATCAAAAAATAATGGAGAAACAGTGGAATAAGGGCT
325 GGAATTACTCTGGGACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCT
* * * * * * *
90674007 CACACAGCTGTGTAGGAAGGCCGTGTGAAGGGTTTAAACTGTGTTACTGAGTTAC--A-C-G-GC
390 CACACGGCTGTGTGGGGAGGCCGTGTGAGGGGTTTAGACCGTGTTACTCAGTTACATAGCTGTG-
* * * * *
90674067 TAACTCACTGTGA-CTGTGTGCAAACTGAAAAAAAATTCCCAAAACGAACCCAACCACATGTAAT
454 TAACTCACTGTGACCT-AGTGCAAA-TCAAAAAAATTTCCCAAAACAAACCCAACCACGTGTAAT
* * *
90674131 GCATAATTGAATACCAATCATATAGCATATCATGCTAAACAGTATAATATCGGTAAGGGAATCAT
517 GCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGTACAATATCGGTAAGAGAA-CAT
** * * * *
90674196 ATCAAT-AGTGTTTCATAGTATGCTAAACAATACAGTAATAGTAATAGTAATAAT-TATGTAATC
581 ATCAATCA-TGTAGCATAGCATGCTAAACAGTACAGTAACAGT-A-A-CAAT--TGT-T-TAATC
*
90674259 AACATGCTTTAGTATAACAGTTTTGGAGACATGATTTTCATGTAATCACTATTAACAATAGCAAT
638 AACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTATTAACAATAGCAAT
* * * *
90674324 CAAGGCATGCTTACTTGCAACCGATTTCATATCAATCACGATTATATAATCAATTAATCAGGAAT
703 CAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAATCAATTAATCAAGAAT
* * * * * * * *
90674389 GAAGTCTTAATCATAATTTTGGGGCTCTAATAGGTAGGGAATTACTCAGGGACTAAAATGATACA
768 GAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGAGAATTACTTAAGGACTAAAATGAAACA
* * * * *
90674454 TATCACAAAATAATGGAGAAACAGGGGAATAGGGGCTCACACGGTTGTGTGGGGAGGCTGTGTGA
833 TATCGCAAAATAATGGAGAAACAGTGGAATAGGGGCTCACACAGCTGTGT-GGGAGGCCGTGTGA
* * * * * * *
90674519 GGGGATTTAGACCGTGTTACTCAGTTACATAGTTGTGTAACTCACTATGACCGTGTACAAATCGA
897 GGGGGTTTAGACCATGTTACTGAGTTACATGGCTGTGTAACTCACTGTGACCGTGTGCAAATCGA
*** *
90674584 AAATTTTTTTCCAA
962 AAAAAATTTCCCAA
* * * * *
90674598 AACAAACCTAACCACATGTAATACATAATTAAATACCAATCATGTAGCATATCATGCTAAATAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * *
90674663 ACAATATCGGT-A-A-AA-GATATCAATCATGTAACAT---A-GC--A-AG-C-T-A--AACAGT
66 ACAATATCAGTAAGAGAATCATATCAATCATGTAGCATAGCACGCTAACAGTCATAAGTAACAGT
* *
90674712 -ACAGTAACAGTAACAATTGTTTAATCAACGTGCTTTAGTATAACAGTTTTAGAGACACGATTTT
131 AACAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTT
* * * * * *
90674776 CAAGTAATCACTACTGACAATAGCAATTAATGCATGCTTACATGCAACCAATTTCATAACAATCA
196 CATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCA
* * * *
90674841 TGATCATATAACCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGAGCTCTAACATGTAGG
261 CGATCATATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGG
* * * * * * *
90674906 GAATTACTCAGGGACTAAAATGATAGATATC-CTAAAATTGTGAAGAAACAATGGAATAAGGACT
326 GAATTACTCTGGGACTAAAATGATACATATCGC-AAAATAGTGGAGAAACAGTGGAATAGGGGCT
* * * * * * * *
90674970 CACACGGCTATGTGCGGAGGTCGTGAGAGGGGTTTATACCGTGTTTCTAAGTTACATACCTGTGT
390 CACACGGCTGTGTGGGGAGGCCGTGTGAGGGGTTTAGACCGTGTTACTCAGTTACATAGCTGTGT
* *
90675035 AACTCACTGTGACCGT-GTGCAAAT-AAAAAAAATTCCCAAAACAAACCCAACAACGTGTAATGC
455 AACTCACTGTGACC-TAGTGCAAATCAAAAAAATTTCCCAAAACAAACCCAACCACGTGTAATGC
* * * **
90675098 ATAATTTAATACCACTCATATAGCATATCATGCTAAACAGTACAATATCAATAAGAGAATCATAT
519 ATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGTACAATATCGGTAAGAGAA-CATAT
* *
90675163 CAATCATGTAGCATAACATGCTAAACAGTACAGTAACAGTAACAATTGTTTAATCAACAGGCTTT
583 CAATCATGTAGCATAGCATGCTAAACAGTACAGTAACAGTAACAATTGTTTAATCAACATGCTTT
* * * *
90675228 AGTATAACAGGTTTGGAGACACGATTTTCATGTAATCACTATTAATAGTATCAATCAAGGCATGC
648 AGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTATTAACAATAGCAATCAAGGCATGC
* * **
90675293 TTACATGCAACCAATTTCATATCAATCACGATTATAT-AGCAATTAATCGGGAATGAAGTCTTAA
713 TTACATGCAACCAATTTCATATCAATCACGATCATATAATCAATTAATCAAGAATGAAGTCTTAA
* * * * * *
90675357 TCATGATTTTAGGGCGCTAACATGCATG-GAATTA-TTCAGGGTCTAAAATGATACATATTGCAA
778 TCATGATTTTAGGGCTCTAACATGTA-GAGAATTACTT-AAGGACTAAAATGAAACATATCGCAA
* * *
90675420 AATAATGGAGAAACAGTGGAATAGGGACTCACACAGCTTTGTAGGAAGGCCGTGTGA-GGGGTTT
841 AATAATGGAGAAACAGTGGAATAGGGGCTCACACAGCTGTGT-GGGAGGCCGTGTGAGGGGGTTT
* ** * * * *
90675484 AAACTGTGTTACTGAGTTACACGGCTTTGTAACTCACTGTGACTGTGTGCAAATAGAAAAAAA-T
905 AGACCATGTTACTGAGTTACATGGCTGTGTAACTCACTGTGACCGTGTGCAAATCGAAAAAAATT
90675548 TCCCAA
970 TCCCAA
** * * * *
90675554 AACAAACTTAACCACGTGTAAGGCATAATTGTATACCAATCATTTAGCATTTCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* *
90675619 ACAATAT-AGGTAAGAGAATCATATGAATCATGTAGTATAGCA---T--C---C-T-A--AACAG
66 ACAATATCA-GTAAGAGAATCATATCAATCATGTAGCATAGCACGCTAACAGTCATAAGTAACAG
* * * * *
90675671 T-ATAGTAACAGTAACCATTGTGTAATCAACATGCTTTAGTATAACAGTTTTAGAGACACGATTA
130 TAACAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTT
* *
90675735 TCATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAATCAATTTCATACCAATC
195 TCATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATC
* *
90675800 ACGATCATATAATCAATTAATCAGGAATAAAGTCTTAATCATGATTTTAGGGCTCTAACTTGTAG
260 ACGATCATATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAG
* *** ** * *
90675865 GAAATTACTCAATGACTAAAATGATACATATCAAAAAATAGTTGAGAAACAGTGGAATATGGGCT
325 GGAATTACTCTGGGACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCT
* * * * * * *
90675930 CACATGGCTGCGTGAGGAGGCTGTGTGAGGGGGTTTAGACCATGTTACTTAGTTACATAGTTGTG
390 CACACGGCTGTGTGGGGAGGCCGTGTGA-GGGGTTTAGACCGTGTTACTCAGTTACATAGCTGTG
* * ** * *
90675995 TAACTCACTATGACCGT-GTGCAAATCGAAAGACGTTGCCCAAAACAAACCCAACCACATGTAAT
454 TAACTCACTGTGACC-TAGTGCAAATC-AAAAAAATTTCCCAAAACAAACCCAACCACGTGTAAT
* * * *
90676059 ACATTATTGAATACCAATCATGTAGCATATCATGCTAAACAGTATAATATCGGTAGGAG-A-A-A
517 GCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGTACAATATCGGTAAGAGAACATA
* *
90676121 TCAATCATGTAACATAGCA-GACTAAACAGTACAGTAATAGTAACAATTGTTTAATCAACATGCT
582 TCAATCATGTAGCATAGCATG-CTAAACAGTACAGTAACAGTAACAATTGTTTAATCAACATGCT
* * * * * * * * *
90676185 TTAGTACAACAGTTTTCGTGACACAATTTTCATGTAATCATTATTGACAAAATCAATCAAAGCAT
646 TTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTATTAACAATAGCAATCAAGGCAT
* * *
90676250 GCTTCCGTGCATCCAATTTCATATCAATCACGATCATATAATCAATTAATCAAGAATGAAGTCTT
711 GCTTACATGCAACCAATTTCATATCAATCACGATCATATAATCAATTAATCAAGAATGAAGTCTT
* * * **
90676315 AATCATCATTTTAGGGTTCTAACATGTA-AGGAATTAC-TCAGGTACTAAAATGAAACATATCAT
776 AATCATGATTTTAGGGCTCTAACATGTAGA-GAATTACTTAAGG-ACTAAAATGAAACATATCGC
* * ** ** * *
90676378 AAAATAGTGGAGAAACAGTAGAATAAGAAG-TCACATGGCTGTGTAAGGAGGCCGTGAGAGGGGG
839 AAAATAATGGAGAAACAGTGGAAT-AGGGGCTCACACAGCTGTGT-GGGAGGCCGTGTGAGGGGG
* * * * * ** * *
90676442 TTTATATCGTGTTATTGAGTTACATGCCCCTGTAACTCACTATGACCGTGTGCAAATCGAAAAAC
902 TTTAGACCATGTTACTGAGTTACATGGCTGTGTAACTCACTGTGACCGTGTGCAAATCGAAAAAA
*
90676507 TTTTCCCAA
967 ATTTCCCAA
* * * *
90676516 AACAAACCGAACAACATGTAATTCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
*
90676581 ACAATATCAGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGT-AT-AGT-A-A-
66 ACAATATCAGTAAGAGAATCATATCAATCATGTAGCATAGCACGCT-AACAGTCATAAGTAACAG
*
90676641 T---AGT-----T-ACAATTGTTTAATCAATATGCTTTAGTATAACAGTTTTGGAGACACGATTT
130 TAACAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTT
* * *
90676697 TCATGTAATCGCTGTTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATATCAATC
195 TCATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATC
* * * * *
90676762 ATGATCATATAATTAATTAATTAAGAATGAAGTCATAATCATGATTTTAGGGCTCTAACATGTAG
260 ACGATCATATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAG
* * * * * * *
90676827 GGAATTACTCAGGGACTAAAATGAAATATATTGCAAAATAGTGGAAAAATAGTGGAATA-GTGCT
325 GGAATTACTCTGGGACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCT
* * * * * *
90676891 CACACGGCTGTGT-GGGAGGCCGTGAG-GGGGAATTTAAACCGTGGTACTGATTTACATGGCTGT
390 CACACGGCTGTGTGGGGAGGCCGTGTGAGGGG--TTTAGACCGTGTTACTCAGTTACATAGCTGT
* * * *
90676954 GTAACTCACTGTGA-CTGTGTGCAAAT-AGAAAAATTTCCCAAAACAAACCCAACCACATGCAAT
453 GTAACTCACTGTGACCT-AGTGCAAATCAAAAAAATTTCCCAAAACAAACCCAACCACGTGTAAT
*
90677017 GCATAATTGAATACCAATCATGTACCATAGT-ATGCTAAACAGTACAATA
517 GCATAATTGAATACCAATCATGTAGCATA-TCATGCTAAACAGTACAATA
90677066 ACAGTAACAA
Statistics
Matches: 8554, Mismatches: 1258, Indels: 772
0.81 0.12 0.07
Matches are distributed among these distances:
895 4 0.00
896 2 0.00
897 17 0.00
898 9 0.00
899 2 0.00
900 2 0.00
901 2 0.00
902 6 0.00
904 4 0.00
905 3 0.00
906 6 0.00
907 5 0.00
908 13 0.00
909 2 0.00
910 8 0.00
911 2 0.00
912 15 0.00
914 3 0.00
915 99 0.01
916 8 0.00
917 5 0.00
918 7 0.00
919 350 0.04
920 61 0.01
923 3 0.00
924 2 0.00
925 5 0.00
927 1 0.00
928 2 0.00
929 11 0.00
930 9 0.00
931 5 0.00
932 6 0.00
933 8 0.00
934 9 0.00
935 2 0.00
936 16 0.00
937 3 0.00
938 1 0.00
942 3 0.00
943 18 0.00
944 12 0.00
945 3 0.00
946 45 0.01
947 152 0.02
948 265 0.03
949 219 0.03
950 15 0.00
951 13 0.00
952 4 0.00
953 3 0.00
954 155 0.02
955 5 0.00
956 72 0.01
957 60 0.01
958 205 0.02
959 269 0.03
960 575 0.07
961 147 0.02
962 585 0.07
963 376 0.04
964 26 0.00
965 375 0.04
966 452 0.05
967 495 0.06
968 110 0.01
969 54 0.01
970 9 0.00
971 121 0.01
972 17 0.00
973 201 0.02
974 393 0.05
975 12 0.00
976 8 0.00
977 7 0.00
978 23 0.00
979 621 0.07
980 454 0.05
981 146 0.02
982 46 0.01
983 97 0.01
984 7 0.00
985 4 0.00
986 12 0.00
987 3 0.00
988 2 0.00
990 11 0.00
991 91 0.01
992 400 0.05
993 5 0.00
995 1 0.00
996 2 0.00
997 3 0.00
998 7 0.00
999 2 0.00
1000 2 0.00
1001 2 0.00
1003 58 0.01
1004 198 0.02
1005 158 0.02
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (975 bp):
AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
ACAATATCAGTAAGAGAATCATATCAATCATGTAGCATAGCACGCTAACAGTCATAAGTAACAGT
AACAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTT
CATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCA
CGATCATATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGG
GAATTACTCTGGGACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTC
ACACGGCTGTGTGGGGAGGCCGTGTGAGGGGTTTAGACCGTGTTACTCAGTTACATAGCTGTGTA
ACTCACTGTGACCTAGTGCAAATCAAAAAAATTTCCCAAAACAAACCCAACCACGTGTAATGCAT
AATTGAATACCAATCATGTAGCATATCATGCTAAACAGTACAATATCGGTAAGAGAACATATCAA
TCATGTAGCATAGCATGCTAAACAGTACAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGT
ATAACAGTTTTGGAGACACGATTTTCATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTA
CATGCAACCAATTTCATATCAATCACGATCATATAATCAATTAATCAAGAATGAAGTCTTAATCA
TGATTTTAGGGCTCTAACATGTAGAGAATTACTTAAGGACTAAAATGAAACATATCGCAAAATAA
TGGAGAAACAGTGGAATAGGGGCTCACACAGCTGTGTGGGAGGCCGTGTGAGGGGGTTTAGACCA
TGTTACTGAGTTACATGGCTGTGTAACTCACTGTGACCGTGTGCAAATCGAAAAAAATTTCCCAA
Found at i:90675808 original size:960 final size:959
Alignment explanation
Indices: 90672783--90677065 Score: 5379
Period size: 960 Copynumber: 4.4 Consensus size: 959
90672773 TAGTAAAATA
* * * * * *
90672783 ATAGTAACAGTAACACTTGTGTAATAAAAAATGCTTTAGTACAACAATTTTGGAGACACGATTTT
1 ATAGTAACAGTAACAATTGTTTAAT-CAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTT
* * * *
90672848 CATGTAATCACTATTAACAATATCGATCAA-GACGTGTTTACATGCAACCAATTTCATACCAATC
65 CATGTAATCACTATTAACAATAGCAATCAATG-CATGCTTACATGCAACCAATTTCATACCAATC
* * ** * *
90672912 ATGATCATATAATAAATTAATCAGGAACGAAAACTTAATCATGATTTTAGAGCTCTAACATATAG
129 ATGATCATATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAG
* * * * * * * * * *
90672977 AGAATTACTCAGGGACTAATATGATATATATTACAAAATAGTGGAGAAAAAATGAAATATTGGCC
194 GGAATTACTCAGGGACTAAAATGATACATA-TCCAAAATAGTGAAGAAACAGTGGAATA-AGGCT
* * *
90673042 CACACAGATGTGTGGAGAGGCCGTGTGAGGGGGTTTAAACCGTGTTACTCAGTTACATAGCTGTG
257 CACACGGCTGTGTGG-GAGGCCGTGTGA-GGGGTTTAAACCGTGTTACTGAGTTACATAGCTGTG
* * * *
90673107 TAACTCACTATGACCGTGTGCAAATCAAAAAACATTTCCCAAAATAAACCCAACCACGTGTAATG
320 TAACTCACTGTGACCGTGTGCAAATCAAAAAA-AATTCCCAAAACAAACCCAACCACATGTAATG
* * *
90673172 CATAATTAAATACCAATCATGTAGCATATCATGCTAAACAGGACAATATCGGTAAGAGAATAATA
384 CATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGTACAATATCGGTAAGAGAATCATA
* * *
90673237 TCAATAATGTAACATAGCAAGCTAAACAGTACAGTAACAATAACAATTGTTTAATCAACATGCTT
449 TCAATCATGTAACATAGCATGCTAAACAGTACAGTAACAGTAACAATTGTTTAATCAACATGCTT
* * * *
90673302 TAGTGTAACAGTTTTGGAGACACGATTTTTATGTAATCACTATTGACAATAGCAATTAAAGCATG
514 TAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTATTAACAATAGCAATCAAAGCATG
* * *
90673367 CTTACACGCAACCAATTTCATATCAATCCCGATCATATAACCAATTAATCAAGAATGAAGTCTTA
579 CTTACATGCAACCAATTTCATATCAATCACGATCATATAATCAATTAATCAAGAATGAAGTCTTA
* * * **
90673432 ATCATAATTTTAAGACTTTAACATGTAGGGAATTACTCAGGGACTAAAATGAAACATATCGTAAA
644 ATCATAATTTTAGGGCTCTAACATGTAGGGAATTACTCAGGGACTAAAATGAAACATATCACAAA
* * *
90673497 ATAGTGGTGAAACAGTGGAATCA-GGACTCACACGGCTGTGTGGGGAGGCCGTGAGAGTGGGTTT
709 ATAATGGAGAAACAGTGGAAT-AGGGACTCACACGGCTGTGTAGGGAGGCCGTGAGAG-GGGTTT
*
90673561 ATACCGTGTTACTGAGTTACATGCCCGTGTAACTCACTATGACCGTGTGCAAATCA-AAAAAAAT
772 ATACCGTGTTACTGAGTTACATGCCCTTGTAACTCACTATGACCGTGTGCAAAT-AGAAAAAAAT
* ** * * *
90673625 TCCCAAAACAAACCCAACAATGTGAAATGCATAATTGAATATCAATCATGTATCATATCATGCTA
836 TCCCAAAACAAACCTAACAACATGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTA
* * *
90673690 AACAGTACAATATCAGTAAGCGAATCATATCAATCATGTAGCATAACATGCTAACCAGT
901 AACAGTACAATATCAGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGT
* * *
90673749 ATAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAATAGGTTTGGAGACAAGATTTTC
1 ATAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTC
* * *
90673814 ATGTAATCACTATTAACAATAACAATCAATGCATGCTTACATGCAACCAATTTCATATCAATCAC
66 ATGTAATCACTATTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATACCAATCAT
* * * *
90673879 GATCATATAA-CTAATTAATCGGGAATGAAGTCTTAATTATGATTTTAGGGCTCTAACATGCATG
131 GATCATATAATC-AATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGG
* * * * *
90673943 GAAATATTCAGGGACTAAAATGATACATATCAAAAAATAATGGAGAAACAGTGGAATAAGGGCTC
195 GAATTACTCAGGGACTAAAATGATACATATC-CAAAATAGTGAAGAAACAGTGGAATAA-GGCTC
* * * *
90674008 ACACAGCTGTGTAGGAAGGCCGTGTGAAGGGTTTAAACTGTGTTACTGAGTTAC--A-C-G-GCT
258 ACACGGCTGTGT-GGGAGGCCGTGTGAGGGGTTTAAACCGTGTTACTGAGTTACATAGCTGTG-T
* * *
90674068 AACTCACTGTGACTGTGTGCAAACTGAAAAAAAATTCCCAAAACGAACCCAACCACATGTAATGC
321 AACTCACTGTGACCGTGTGCAAA-TCAAAAAAAATTCCCAAAACAAACCCAACCACATGTAATGC
* * *
90674133 ATAATTGAATACCAATCATATAGCATATCATGCTAAACAGTATAATATCGGTAAGGGAATCATAT
385 ATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGTACAATATCGGTAAGAGAATCATAT
** * * * *
90674198 CAAT-AGTGTTTCATAGTATGCTAAACAATACAGTAATAGTAATAGTAATAAT-TATGTAATCAA
450 CAATCA-TGTAACATAGCATGCTAAACAGTACAGTAACAGT-A-A-CAAT--TGT-T-TAATCAA
*
90674261 CATGCTTTAGTATAACAGTTTTGGAGACATGATTTTCATGTAATCACTATTAACAATAGCAATCA
507 CATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTATTAACAATAGCAATCA
* * * * *
90674326 AGGCATGCTTACTTGCAACCGATTTCATATCAATCACGATTATATAATCAATTAATCAGGAATGA
572 AAGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAATCAATTAATCAAGAATGA
* * * *
90674391 AGTCTTAATCATAATTTTGGGGCTCTAATAGGTAGGGAATTACTCAGGGACTAAAATGATACATA
637 AGTCTTAATCATAATTTTAGGGCTCTAACATGTAGGGAATTACTCAGGGACTAAAATGAAACATA
* * * * * *
90674456 TCACAAAATAATGGAGAAACAGGGGAATAGGGGCTCACACGGTTGTGTGGGGAGGCTGTGTGAGG
702 TCACAAAATAATGGAGAAACAGTGGAATAGGGACTCACACGGCTGTGTAGGGAGGCCGTGAGAGG
* * * * *
90674521 GGATTTAGACCGTGTTACTCAGTTACATAG--TTGTGTAACTCACTATGACCGTGTACAAATCGA
767 GG-TTTATACCGTGTTACTGAGTTACAT-GCCCT-TGTAACTCACTATGACCGTGTGCAAATAGA
*** * * * *
90674584 AAATTTTTTTCCAAAACAAACCTAACCACATGTAATACATAATTAAATACCAATCATGTAGCATA
829 AAA-AAATTCCCAAAACAAACCTAACAACATGTAATGCATAATTGAATACCAATCATGTAGCATA
* * * * *
90674649 TCATGCTAAATAGTACAATATCGGT-A-A-AA-GATATCAATCATGTAACATAGCAAGCTAAACA
893 TCATGCTAAACAGTACAATATCAGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACA
90674710 GT
958 GT
* * *
90674712 ACAGTAACAGTAACAATTGTTTAATCAACGTGCTTTAGTATAACAGTTTTAGAGACACGATTTTC
1 ATAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTC
* * * * *
90674777 AAGTAATCACTACTGACAATAGCAATTAATGCATGCTTACATGCAACCAATTTCATAACAATCAT
66 ATGTAATCACTATTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATACCAATCAT
* * *
90674842 GATCATATAACCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGAGCTCTAACATGTAGGG
131 GATCATATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGG
* * *
90674907 AATTACTCAGGGACTAAAATGATAGATATCCTAAAATTGTGAAGAAACAATGGAATAAGGACTCA
196 AATTACTCAGGGACTAAAATGATACATATCC-AAAATAGTGAAGAAACAGTGGAATAAGG-CTCA
* * * * * * *
90674972 CACGGCTATGTGCGGAGGTCGTGAGAGGGGTTTATACCGTGTTTCTAAGTTACATACCTGTGTAA
259 CACGGCTGTGTG-GGAGGCCGTGTGAGGGGTTTAAACCGTGTTACTGAGTTACATAGCTGTGTAA
* *
90675037 CTCACTGTGACCGTGTGCAAAT-AAAAAAAATTCCCAAAACAAACCCAACAACGTGTAATGCATA
323 CTCACTGTGACCGTGTGCAAATCAAAAAAAATTCCCAAAACAAACCCAACCACATGTAATGCATA
* * * **
90675101 ATTTAATACCACTCATATAGCATATCATGCTAAACAGTACAATATCAATAAGAGAATCATATCAA
388 ATTGAATACCAATCATGTAGCATATCATGCTAAACAGTACAATATCGGTAAGAGAATCATATCAA
* * *
90675166 TCATGTAGCATAACATGCTAAACAGTACAGTAACAGTAACAATTGTTTAATCAACAGGCTTTAGT
453 TCATGTAACATAGCATGCTAAACAGTACAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGT
* * * * *
90675231 ATAACAGGTTTGGAGACACGATTTTCATGTAATCACTATTAATAGTATCAATCAAGGCATGCTTA
518 ATAACAGTTTTGGAGACACGATTTTCATGTAATCACTATTAACAATAGCAATCAAAGCATGCTTA
* * **
90675296 CATGCAACCAATTTCATATCAATCACGATTATAT-AGCAATTAATCGGGAATGAAGTCTTAATCA
583 CATGCAACCAATTTCATATCAATCACGATCATATAATCAATTAATCAAGAATGAAGTCTTAATCA
* * * * * * * **
90675360 TGATTTTAGGGCGCTAACATGCATGGAATTATTCAGGGTCTAAAATGATACATATTGCAAAATAA
648 TAATTTTAGGGCTCTAACATGTAGGGAATTACTCAGGGACTAAAATGAAACATATCACAAAATAA
* * * * * *
90675425 TGGAGAAACAGTGGAATAGGGACTCACACAGCTTTGTAGGAAGGCCGTGTGAGGGGTTTAAACTG
713 TGGAGAAACAGTGGAATAGGGACTCACACGGCTGTGTAGGGAGGCCGTGAGAGGGGTTTATACCG
* * * * *
90675490 TGTTACTGAGTTACACGGCTTTGTAACTCACTGTGACTGTGTGCAAATAGAAAAAAATTCCCAAA
778 TGTTACTGAGTTACATGCCCTTGTAACTCACTATGACCGTGTGCAAATAGAAAAAAATTCCCAAA
* * * * * * *
90675555 ACAAACTTAACCACGTGTAAGGCATAATTGTATACCAATCATTTAGCATTTCATGCTAAACAGTA
843 ACAAACCTAACAACATGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGTA
* * *
90675620 CAATAT-AGGTAAGAGAATCATATGAATCATGTAGTATAGCATCCTAAACAGT
908 CAATATCA-GTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGT
* * * *
90675672 ATAGTAACAGTAACCATTGTGTAATCAACATGCTTTAGTATAACAGTTTTAGAGACACGATTATC
1 ATAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTC
* * *
90675737 ATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAATCAATTTCATACCAATCAC
66 ATGTAATCACTATTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATACCAATCAT
* * *
90675802 GATCATATAATCAATTAATCAGGAATAAAGTCTTAATCATGATTTTAGGGCTCTAACTTGTAGGA
131 GATCATATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGG
** * *
90675867 AATTACTCAATGACTAAAATGATACATATCAAAAAATAGTTG-AGAAACAGTGGAATATGGGCTC
196 AATTACTCAGGGACTAAAATGATACATATC-CAAAATAG-TGAAGAAACAGTGGAATA-AGGCTC
* * * * * * *
90675931 ACATGGCTGCGTGAGGAGGCTGTGTGAGGGGGTTTAGACCATGTTACTTAGTTACATAGTTGTGT
258 ACACGGCTGTGTG-GGAGGCCGTGTGA-GGGGTTTAAACCGTGTTACTGAGTTACATAGCTGTGT
* * * ** *
90675996 AACTCACTATGACCGTGTGCAAATCGAAAGACGTTGCCCAAAACAAACCCAACCACATGTAATAC
321 AACTCACTGTGACCGTGTGCAAATCAAAAAAAATT-CCCAAAACAAACCCAACCACATGTAATGC
* * *
90676061 ATTATTGAATACCAATCATGTAGCATATCATGCTAAACAGTATAATATCGGTAGGAG-A--A-AT
385 ATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGTACAATATCGGTAAGAGAATCATAT
*
90676122 CAATCATGTAACATAGCA-GACTAAACAGTACAGTAATAGTAACAATTGTTTAATCAACATGCTT
450 CAATCATGTAACATAGCATG-CTAAACAGTACAGTAACAGTAACAATTGTTTAATCAACATGCTT
* * * * * * * *
90676186 TAGTACAACAGTTTTCGTGACACAATTTTCATGTAATCATTATTGACAAAATCAATCAAAGCATG
514 TAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTATTAACAATAGCAATCAAAGCATG
* * *
90676251 CTTCCGTGCATCCAATTTCATATCAATCACGATCATATAATCAATTAATCAAGAATGAAGTCTTA
579 CTTACATGCAACCAATTTCATATCAATCACGATCATATAATCAATTAATCAAGAATGAAGTCTTA
* * * * *
90676316 ATCATCATTTTAGGGTTCTAACATGTAAGGAATTACTCAGGTACTAAAATGAAACATATCATAAA
644 ATCATAATTTTAGGGCTCTAACATGTAGGGAATTACTCAGGGACTAAAATGAAACATATCACAAA
* * * * * * *
90676381 ATAGTGGAGAAACAGTAGAATAAGAAGTCACATGGCTGTGTAAGGAGGCCGTGAGAGGGGGTTTA
709 ATAATGGAGAAACAGTGGAATAGGGACTCACACGGCTGTGTAGGGAGGCCGTGAGA-GGGGTTTA
* * * * **
90676446 TATCGTGTTATTGAGTTACATGCCCCTGTAACTCACTATGACCGTGTGCAAATCGAAAAACTTTT
773 TACCGTGTTACTGAGTTACATGCCCTTGTAACTCACTATGACCGTGTGCAAATAGAAAAA-AATT
* *
90676511 CCCAAAACAAACCGAACAACATGTAATTCATAATTGAATACCAATCATGTAGCATATCATGCTAA
837 CCCAAAACAAACCTAACAACATGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAA
90676576 ACAGTACAATATCAGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGT
902 ACAGTACAATATCAGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGT
* * *
90676634 ATAGTAATAGTTACAATTGTTTAATCAATATGCTTTAGTATAACAGTTTTGGAGACACGATTTTC
1 ATAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTC
* * *
90676699 ATGTAATCGCTGTTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATATCAATCAT
66 ATGTAATCACTATTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATACCAATCAT
* * * *
90676764 GATCATATAATTAATTAATTAAGAATGAAGTCATAATCATGATTTTAGGGCTCTAACATGTAGGG
131 GATCATATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGG
* * * *
90676829 AATTACTCAGGGACTAAAATGAAATATATTGCAAAATAGTGGAA-AAATAGTGGAAT-AGTGCTC
196 AATTACTCAGGGACTAAAATGATACATA-TCCAAAATAGT-GAAGAAACAGTGGAATAAG-GCTC
* * * *
90676892 ACACGGCTGTGTGGGAGGCCGTGAG-GGGGAATTTAAACCGTGGTACTGATTTACATGGCTGTGT
258 ACACGGCTGTGTGGGAGGCCGTGTGAGGGG--TTTAAACCGTGTTACTGAGTTACATAGCTGTGT
* * * *
90676956 AACTCACTGTGACTGTGTGCAAAT-AGAAAAATTTCCCAAAACAAACCCAACCACATGCAATGCA
321 AACTCACTGTGACCGTGTGCAAATCAAAAAAAATTCCCAAAACAAACCCAACCACATGTAATGCA
*
90677020 TAATTGAATACCAATCATGTACCATAGT-ATGCTAAACAGTACAATA
386 TAATTGAATACCAATCATGTAGCATA-TCATGCTAAACAGTACAATA
90677066 ACAGTAACAA
Statistics
Matches: 2853, Mismatches: 407, Indels: 122
0.84 0.12 0.04
Matches are distributed among these distances:
956 72 0.03
957 51 0.02
958 207 0.07
959 267 0.09
960 599 0.21
961 141 0.05
962 344 0.12
963 379 0.13
964 30 0.01
965 348 0.12
966 318 0.11
967 96 0.03
968 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (959 bp):
ATAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTC
ATGTAATCACTATTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATACCAATCAT
GATCATATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGG
AATTACTCAGGGACTAAAATGATACATATCCAAAATAGTGAAGAAACAGTGGAATAAGGCTCACA
CGGCTGTGTGGGAGGCCGTGTGAGGGGTTTAAACCGTGTTACTGAGTTACATAGCTGTGTAACTC
ACTGTGACCGTGTGCAAATCAAAAAAAATTCCCAAAACAAACCCAACCACATGTAATGCATAATT
GAATACCAATCATGTAGCATATCATGCTAAACAGTACAATATCGGTAAGAGAATCATATCAATCA
TGTAACATAGCATGCTAAACAGTACAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATA
ACAGTTTTGGAGACACGATTTTCATGTAATCACTATTAACAATAGCAATCAAAGCATGCTTACAT
GCAACCAATTTCATATCAATCACGATCATATAATCAATTAATCAAGAATGAAGTCTTAATCATAA
TTTTAGGGCTCTAACATGTAGGGAATTACTCAGGGACTAAAATGAAACATATCACAAAATAATGG
AGAAACAGTGGAATAGGGACTCACACGGCTGTGTAGGGAGGCCGTGAGAGGGGTTTATACCGTGT
TACTGAGTTACATGCCCTTGTAACTCACTATGACCGTGTGCAAATAGAAAAAAATTCCCAAAACA
AACCTAACAACATGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGTACAA
TATCAGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGT
Found at i:90677463 original size:902 final size:900
Alignment explanation
Indices: 90675163--90677782 Score: 2629
Period size: 902 Copynumber: 2.8 Consensus size: 900
90675153 AGAATCATAT
* * * *
90675163 CAATCATGTAGCATAACATGCTAAACAGTACAGTAACAGTAACAATTGTTTAATCAACAGGCTTT
1 CAATCATGTAGCAT-ATATGCTAAACAGTACAATAACAGTAACAATTGTTTAACCAACATGCTTT
* **
90675228 AGTATAACAGGTTTGGAGACACGATTTTCATGTAATCACTATTAATAGTATCAATCAAGGCATGC
65 AGTATAACA-GTTTGGAGGCACGATTTTCATGT-AT---TAACAATAG---CAATCAAGGCATGC
* * * * * *
90675293 TTACATGCAACCAATTTCATATCAATCACGATTATAT-AGCAATTAATCGGGAATGAAGTCTTAA
122 TTACATGTAACCAATTTCATATCAATCACGATCATATAATCAACTAACCAGGAATGAAGTCTTAA
* * * * * **
90675357 TCATGATTTTAGGGCGCTAACATGCATGGAATTATTCAGGGTCTAAAATGATACATATTGCAAAA
187 TCATGATTTTATGGCTCTAACATG-AAGGAATTACTCAGGGTCTAAAATGAAACATATCACAAAA
* * ** *
90675422 TAATGGAGAAACAGTGGAATAGGGACTCACACAGCTTTGTAGGA-AGGCCGTGTGA-GGGGTTTA
251 TAATGGAGAAATAGTGGAATAGGGGCTCACATGGCTTTGT-GGAGAGGCCGTATGAGGGGGTTTA
* ** *
90675485 AACTGTGTTACTGAGTTACACGGCTTTGTAACTCACTGTGACTGTGTGCAAATAGAAAAAAA-TT
315 AACTGTGTTACTGAGTTACATGGCCCTGTAACTCACTGTGAC-GTGTGCAAATCGAAAAAAATTT
* * * * *
90675549 CCCAAAACAAACTTAACCACGTGTAAGGCATAATTGTATACCAATCATTTAGCATTTCATGCTAA
379 CCCAAAACAAACTTAACAACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAA
* * *
90675614 ACAGTACAATATAGGTAAGAGAATCATATGAATCATGTAGTATAGCATCCTAAACAGTATAGTAA
444 ACAGTACAATATA-GTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTATAGTAA
* * *
90675679 CAGTAACCATTGTGTAATCAACATGCTTTAGTATAACAGTTTTAGAGACACGATTATCATGTAAT
508 CAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTAGAGACACGATTTTCATGTAAT
*
90675744 CACTATTAACAATAGCAATCAAGGCATGCTTACATGCAATCAATTTCATACCAATCACGATCATA
573 CACTATTAACAATAGCAATCAAGGCATGCTTACATGCAATCAATTTCATATCAATCACGATCATA
* * * *
90675809 TAATCAATTAATCAGGAATAAAGTCTTAATCATGATTTTAGGGCTCTAACTTGTAGGAAATTACT
638 TAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACT
** * * ** * * *
90675874 CAATGACTAAAATGATACATATCAAAAAATAGTTGAGAAACAGTGGAATATGGGCTCACATGGCT
703 CAGGGACTAAAATGAAATATATTGAAAAATAGTGGAGAAATAGTGGAATATGGGCTCACACGGCT
* * * * *
90675939 GCGTGAGGAGGCTGTGTGAGGGGGTTTAGACCATGTTACTTAGTTACATAGTTGTGTAACTCACT
768 GCGTGAGGAGGC-GCGTGAGGGGGTTTAAACCATGGTACTGAGTTACATAGCTGTGTAACTCACT
* * * *
90676004 ATGACCGTGTGCAAATCGAAAGACGTTGCCCAAAACAAACCCAACCACATGTAATACATTATTGA
832 ATGACCGTGTGCAAATAGAAAGACATTGCCCAAAACAAACCCAACCACATGCAATACATAATTGA
90676069 ATAC
897 ATAC
* * * * *** * ***
90676073 CAATCATGTAGCATATCATGCTAAACAGTATAATATCGGTAGGAGAAATCAATCATGTAACATAG
1 CAATCATGTAGCATAT-ATGCTAAACAGTACAATAACAGTA--A-CAATTGTTTAACCAACAT-G
** * *** ** * * ***
90676138 C-AGACTA-AACAGTACAGTAATAGTAACAATTGTTTAATCAACATGCT-TTAGTACAACAGTTT
61 CTTTAGTATAACAGT----TTGGAGGCACGA---TTT--T---CATG-TATTA--ACAATAGCAA
** * *** * * * * * *
90676200 TCGTGACACAATTTTCATGTAATCATTATTGACAAAATCAATCAAAGCATGCTTCCGTGCATCCA
111 TCAAGGCA-TGCTTACATGTAACCA--ATT-TC-ATATCAATC--A-C--G-AT-CAT--AT--A
* * * * * * * * *
90676265 ATTTCATA-TCAATCACGATCAT-ATAATCAATTAATCAAGA-ATGAAGTCT-TAATCATCATTT
160 A--TCA-ACT-AACCAGGA--ATGA-AGTC--TTAATCATGATTTTATGGCTCTAA-CATGA---
** * * *
90676326 TAGGGTTCTAACATGTAAGGAATTACTCAGGTACTAAAATGAAACATATCATAAAATAGTGGAGA
212 -AGGAAT-T-AC---TCA-G---------GGT-CTAAAATGAAACATATCACAAAATAATGGAGA
* * ** * * *
90676391 AACAGTAGAATAAGAAG-TCACATGGCTGTGT-AAGGAGGCCGTGA-GAGGGGGTTTATA-TCGT
260 AATAGTGGAAT-AGGGGCTCACATGGCTTTGTGGA-GAGGCCGT-ATGAGGGGGTTTAAACT-GT
* * * **
90676452 GTTATTGAGTTACATGCCCCTGTAACTCACTATGACCGTGTGCAAATCGAAAAACTTTTCCCAAA
321 GTTACTGAGTTACATGGCCCTGTAACTCACTGTGA-CGTGTGCAAATCGAAAAAAATTTCCCAAA
** * *
90676517 ACAAACCGAACAACATGTAATTCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGTA
385 ACAAACTTAACAACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGTA
* *
90676582 CAATATCAGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTATAGTAATAGTTA
450 CAATAT-AGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTATAGTAACAGTAA
* * * *
90676647 CAATTGTTTAATCAATATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCGCTGT
514 CAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTAGAGACACGATTTTCATGTAATCACTAT
* * * *
90676712 TAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATATCAATCATGATCATATAATTA
579 TAACAATAGCAATCAAGGCATGCTTACATGCAATCAATTTCATATCAATCACGATCATATAATCA
* *
90676777 ATTAATTAAGAATGAAGTCATAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTCAGGGA
644 ATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTCAGGGA
* * * *
90676842 CTAAAATGAAATATATTGCAAAATAGTGGAAAAATAGTGGAATA-GTGCTCACACGGCTGTGTG-
709 CTAAAATGAAATATATTGAAAAATAGTGGAGAAATAGTGGAATATGGGCTCACACGGCTGCGTGA
* * * *
90676905 GGAGGC-CGTGAGGGGGAATTTAAACCGTGGTACTGATTTACATGGCTGTGTAACTCACTGTGAC
774 GGAGGCGCGTGAGGGGG--TTTAAACCATGGTACTGAGTTACATAGCTGTGTAACTCACTATGAC
* * *
90676969 TGTGTGCAAATAGAAA-A-ATTTCCCAAAACAAACCCAACCACATGCAATGCATAATTGAATAC
837 CGTGTGCAAATAGAAAGACATTGCCCAAAACAAACCCAACCACATGCAATACATAATTGAATAC
*
90677031 CAATCATGTACCATAGTATGCTAAACAGTACAATAACAGTAACAATTGTTTAACCAACATGCTTT
1 CAATCATGTAGCATA-TATGCTAAACAGTACAATAACAGTAACAATTGTTTAACCAACATGCTTT
*
90677096 AGTATAACAGTTTTGGAGGCACGATTTTCATGTATTAACAATAGCAATCAAGGCATGCTTACATA
65 AGTATAACAG-TTTGGAGGCACGATTTTCATGTATTAACAATAGCAATCAAGGCATGCTTACATG
90677161 TAACCAATTTCATATCAATCACGATCATATAATCAACTAACCAGGAATGAAGTCTTAATCATGAT
129 TAACCAATTTCATATCAATCACGATCATATAATCAACTAACCAGGAATGAAGTCTTAATCATGAT
* * *
90677226 TTTATGGCTCTAACATGTAGGGAATTACTCAGGGACTAAAATGAAACATATCACAAAATAGTGGA
194 TTTATGGCTCTAACATG-AAGGAATTACTCAGGGTCTAAAATGAAACATATCACAAAATAATGGA
90677291 GAAATAGTGGAATAGGGGCTCACATGGCTTTGTGGAGAGGCCGTATGAGGGGGTTTAAACTGTGT
258 GAAATAGTGGAATAGGGGCTCACATGGCTTTGTGGAGAGGCCGTATGAGGGGGTTTAAACTGTGT
* * * *
90677356 TACCT-AATTACGTGGCCGTGTAACTCACTGTGATCGTGTGCAAATCGAAAAAAATTTCTCAAAA
323 TA-CTGAGTTACATGGCCCTGTAACTCACTGTGA-CGTGTGCAAATCGAAAAAAATTTCCCAAAA
* * *
90677420 TAAACTTAACTACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGTAT
386 CAAACTTAACAACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGTAC
* * * *
90677485 AATATTAGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTATACAGTACAGCAACAGTAAA
451 AATA-TAGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTATAGTAACAGTAAC
* **
90677550 AATTGTTTAATCAACATGCTTTTGTATAACAGTTTTAGAGACATAATTTTCATGTAATCACTATT
515 AATTGTTTAATCAACATGCTTTAGTATAACAGTTTTAGAGACACGATTTTCATGTAATCACTATT
* * *
90677615 AACAATAGCAATCAAGGCGTGATTACATGCAATCAATTTCATATCAATCACGATCTTATAATCAA
580 AACAATAGCAATCAAGGCATGCTTACATGCAATCAATTTCATATCAATCACGATCATATAATCAA
* * *
90677680 TTAATCAAGAATGATGTCTTAATCATGATTTTAGGGCTAC-AACATGTAGGGAATTATTTAGGGA
645 TTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCT-CTAACATGTAGGGAATTACTCAGGGA
*
90677744 CTAAAATGAAATATATTGTAAAATAGTGGAGAAATAGTG
709 CTAAAATGAAATATATTGAAAAATAGTGGAGAAATAGTG
90677783 CAAATCAAAA
Statistics
Matches: 1367, Mismatches: 248, Indels: 198
0.75 0.14 0.11
Matches are distributed among these distances:
901 4 0.00
902 454 0.33
903 7 0.01
909 1 0.00
910 34 0.02
911 2 0.00
912 6 0.00
913 14 0.01
914 2 0.00
915 6 0.00
916 2 0.00
917 1 0.00
918 11 0.01
919 12 0.01
920 10 0.01
921 15 0.01
922 11 0.01
923 13 0.01
924 8 0.01
925 5 0.00
926 1 0.00
927 2 0.00
928 1 0.00
929 3 0.00
930 1 0.00
931 2 0.00
932 3 0.00
933 1 0.00
935 2 0.00
936 1 0.00
937 3 0.00
938 15 0.01
939 2 0.00
940 12 0.01
941 7 0.01
942 19 0.01
943 11 0.01
944 4 0.00
945 8 0.01
946 1 0.00
948 1 0.00
949 2 0.00
950 4 0.00
953 6 0.00
954 2 0.00
955 13 0.01
956 6 0.00
957 1 0.00
958 85 0.06
959 5 0.00
960 116 0.08
961 74 0.05
962 334 0.24
963 1 0.00
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.29
Consensus pattern (900 bp):
CAATCATGTAGCATATATGCTAAACAGTACAATAACAGTAACAATTGTTTAACCAACATGCTTTA
GTATAACAGTTTGGAGGCACGATTTTCATGTATTAACAATAGCAATCAAGGCATGCTTACATGTA
ACCAATTTCATATCAATCACGATCATATAATCAACTAACCAGGAATGAAGTCTTAATCATGATTT
TATGGCTCTAACATGAAGGAATTACTCAGGGTCTAAAATGAAACATATCACAAAATAATGGAGAA
ATAGTGGAATAGGGGCTCACATGGCTTTGTGGAGAGGCCGTATGAGGGGGTTTAAACTGTGTTAC
TGAGTTACATGGCCCTGTAACTCACTGTGACGTGTGCAAATCGAAAAAAATTTCCCAAAACAAAC
TTAACAACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGTACAATAT
AGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTATAGTAACAGTAACAATTGT
TTAATCAACATGCTTTAGTATAACAGTTTTAGAGACACGATTTTCATGTAATCACTATTAACAAT
AGCAATCAAGGCATGCTTACATGCAATCAATTTCATATCAATCACGATCATATAATCAATTAATC
AAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTCAGGGACTAAAAT
GAAATATATTGAAAAATAGTGGAGAAATAGTGGAATATGGGCTCACACGGCTGCGTGAGGAGGCG
CGTGAGGGGGTTTAAACCATGGTACTGAGTTACATAGCTGTGTAACTCACTATGACCGTGTGCAA
ATAGAAAGACATTGCCCAAAACAAACCCAACCACATGCAATACATAATTGAATAC
Found at i:90682499 original size:17 final size:17
Alignment explanation
Indices: 90682477--90682514 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
90682467 GTAACACCCC
90682477 AGTTCTGGCGGATATAA
1 AGTTCTGGCGGATATAA
*
90682494 AGTTCTGGTGGATATAA
1 AGTTCTGGCGGATATAA
90682511 AGTT
1 AGTT
90682515 TTGGGTGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.29, C:0.08, G:0.29, T:0.34
Consensus pattern (17 bp):
AGTTCTGGCGGATATAA
Found at i:90687719 original size:21 final size:20
Alignment explanation
Indices: 90687695--90687763 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
90687685 AATTTATTTA
90687695 ATAATAATCTAATATAAAACC
1 ATAATAAT-TAATATAAAACC
* **
90687716 ATAAT-GTTAAT-TAATAATT
1 ATAATAATTAATATAA-AACC
90687735 ATAATAATTTAATATAAAACC
1 ATAATAA-TTAATATAAAACC
90687756 ATAATAAT
1 ATAATAAT
90687764 AATCATTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
18 3 0.08
19 11 0.29
20 2 0.05
21 19 0.50
22 3 0.08
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.36
Consensus pattern (20 bp):
ATAATAATTAATATAAAACC
Found at i:90692762 original size:20 final size:19
Alignment explanation
Indices: 90692732--90692781 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 19
90692722 TATTAATCAT
*
90692732 ATTTTATTAAATAAAAATA
1 ATTTTAATAAATAAAAATA
*
90692751 ATATTTAATAAATAAAATTA
1 AT-TTTAATAAATAAAAATA
90692771 ATTTT-ATAAAT
1 ATTTTAATAAAT
90692782 TTTATTAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 6 0.21
19 5 0.18
20 17 0.61
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
ATTTTAATAAATAAAAATA
Found at i:90694051 original size:26 final size:26
Alignment explanation
Indices: 90694015--90694066 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
90694005 TAAATAAAGA
90694015 TATGCATGAAGATCGAAACAAGTTTG
1 TATGCATGAAGATCGAAACAAGTTTG
90694041 TATGCATGAAGATCGAAACAAGTTTG
1 TATGCATGAAGATCGAAACAAGTTTG
90694067 ATCTACCTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (26 bp):
TATGCATGAAGATCGAAACAAGTTTG
Found at i:90696253 original size:16 final size:16
Alignment explanation
Indices: 90696232--90696263 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
90696222 TCATCTTTTT
90696232 TTATTATTAAAAATTA
1 TTATTATTAAAAATTA
90696248 TTATTATTAAAAATTA
1 TTATTATTAAAAATTA
90696264 ACATAACTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TTATTATTAAAAATTA
Found at i:90706681 original size:33 final size:33
Alignment explanation
Indices: 90706608--90706681 Score: 103
Period size: 33 Copynumber: 2.2 Consensus size: 33
90706598 CTTATATGGG
* * *
90706608 GGAGTTGGTGCTTTAGTTGGTGGTGCTGGTGCT
1 GGAGTTGGTGCTTTAGTTGGGGGTGCTGGAGCA
*
90706641 GGAGTTGGTGCTTTGGTTGGGGGTGCTGGAGCA
1 GGAGTTGGTGCTTTAGTTGGGGGTGCTGGAGCA
*
90706674 GGTGTTGG
1 GGAGTTGG
90706682 GGGCTTATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.07, C:0.08, G:0.50, T:0.35
Consensus pattern (33 bp):
GGAGTTGGTGCTTTAGTTGGGGGTGCTGGAGCA
Found at i:90706805 original size:48 final size:48
Alignment explanation
Indices: 90706734--90706915 Score: 274
Period size: 48 Copynumber: 3.8 Consensus size: 48
90706724 TGCGGGAGTA
* * * ** *
90706734 GGGGGTTTATATGGGGGAGTAGGAGCCTTGGTTGGTGGTGTTGGTGCT
1 GGGGGCTTATATGGTGGAGTAGGAGCCTTGGTTGGTGGCGCAGGAGCT
90706782 GGGGGCTTATATGGTGGAGTAGGAGCCTTGGTTGGTGGCGCAGGAGCT
1 GGGGGCTTATATGGTGGAGTAGGAGCCTTGGTTGGTGGCGCAGGAGCT
90706830 GGGGGCTTATATGGTGGAGTAGGAGCCTTGGTTGGTGGCGCAGGAGCT
1 GGGGGCTTATATGGTGGAGTAGGAGCCTTGGTTGGTGGCGCAGGAGCT
* * * *
90706878 GGTGGTTTATATGGTGGAGTGGGGGCCTTGGTTGGTGG
1 GGGGGCTTATATGGTGGAGTAGGAGCCTTGGTTGGTGG
90706916 TTTATATGGT
Statistics
Matches: 124, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 124 1.00
ACGTcount: A:0.12, C:0.09, G:0.49, T:0.29
Consensus pattern (48 bp):
GGGGGCTTATATGGTGGAGTAGGAGCCTTGGTTGGTGGCGCAGGAGCT
Found at i:90706892 original size:27 final size:26
Alignment explanation
Indices: 90706814--90706894 Score: 66
Period size: 27 Copynumber: 3.2 Consensus size: 26
90706804 GAGCCTTGGT
*
90706814 TGGTGGCGCAGGAGCTGGGGGCTTATA
1 TGGTGGCGCAGGAGCTGGTGG-TTATA
* *
90706841 TGGTGGAGTAGGAGCCT--TGG---T-
1 TGGTGGCGCAGGAG-CTGGTGGTTATA
90706862 TGGTGGCGCAGGAGCTGGTGGTTTATA
1 TGGTGGCGCAGGAGCTGGTGG-TTATA
90706889 TGGTGG
1 TGGTGG
90706895 AGTGGGGGCC
Statistics
Matches: 41, Mismatches: 5, Indels: 16
0.66 0.08 0.26
Matches are distributed among these distances:
20 2 0.05
21 12 0.29
22 4 0.10
26 3 0.07
27 18 0.44
28 2 0.05
ACGTcount: A:0.14, C:0.11, G:0.48, T:0.27
Consensus pattern (26 bp):
TGGTGGCGCAGGAGCTGGTGGTTATA
Found at i:90706915 original size:33 final size:33
Alignment explanation
Indices: 90706877--90706945 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
90706867 GCGCAGGAGC
90706877 TGGTGGTTTATATGGTGGAGTGGGGGCCTTGGT
1 TGGTGGTTTATATGGTGGAGTGGGGGCCTTGGT
90706910 TGGTGGTTTATATGGTGGAGTGGGGGCCTTGGT
1 TGGTGGTTTATATGGTGGAGTGGGGGCCTTGGT
90706943 TGG
1 TGG
90706946 GGGTGCTGGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.09, C:0.06, G:0.49, T:0.36
Consensus pattern (33 bp):
TGGTGGTTTATATGGTGGAGTGGGGGCCTTGGT
Found at i:90706977 original size:27 final size:27
Alignment explanation
Indices: 90706925--90706986 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
90706915 GTTTATATGG
* *
90706925 TGGAGTGGGGGCCTTGGTTGGGGGTGC
1 TGGAGTGGGGGCCTTGGTCGGCGGTGC
*
90706952 TGGAGTTGGGGCCTT-GTACGGCGGTGC
1 TGGAGTGGGGGCCTTGGT-CGGCGGTGC
*
90706979 CGGAGTGG
1 TGGAGTGG
90706987 TGGGAGGCTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
26 2 0.07
27 27 0.93
ACGTcount: A:0.06, C:0.15, G:0.55, T:0.24
Consensus pattern (27 bp):
TGGAGTGGGGGCCTTGGTCGGCGGTGC
Found at i:90708759 original size:22 final size:23
Alignment explanation
Indices: 90708725--90708767 Score: 79
Period size: 22 Copynumber: 1.9 Consensus size: 23
90708715 TAATAAAAAA
90708725 GCTAATTTTTTTCAATTTCATTT
1 GCTAATTTTTTTCAATTTCATTT
90708748 GCTAA-TTTTTTCAATTTCAT
1 GCTAATTTTTTTCAATTTCAT
90708768 ACTTTTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.23, C:0.14, G:0.05, T:0.58
Consensus pattern (23 bp):
GCTAATTTTTTTCAATTTCATTT
Found at i:90712520 original size:14 final size:14
Alignment explanation
Indices: 90712497--90712529 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
90712487 TTATATTAGT
90712497 ATAA-TAAAATAAA
1 ATAATTAAAATAAA
*
90712510 ATAATTAAAATATA
1 ATAATTAAAATAAA
90712524 ATAATT
1 ATAATT
90712530 CTATTAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
ATAATTAAAATAAA
Found at i:90712604 original size:16 final size:16
Alignment explanation
Indices: 90712583--90712614 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
90712573 AATAAAAAAG
90712583 TTTATATAATTAATAA
1 TTTATATAATTAATAA
90712599 TTTATATAATTAATAA
1 TTTATATAATTAATAA
90712615 ACAGTAATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TTTATATAATTAATAA
Found at i:90715170 original size:12 final size:12
Alignment explanation
Indices: 90715149--90715185 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
90715139 TTTTAAATTT
90715149 AAAT-ATTTTAA
1 AAATAATTTTAA
90715160 AAATAATTTTAA
1 AAATAATTTTAA
90715172 AAA-AATTATTAA
1 AAATAATT-TTAA
90715184 AA
1 AA
90715186 TTATATAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 8 0.33
12 16 0.67
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
AAATAATTTTAA
Found at i:90717564 original size:35 final size:35
Alignment explanation
Indices: 90717525--90717630 Score: 107
Period size: 35 Copynumber: 3.2 Consensus size: 35
90717515 AGGCACCAAT
90717525 AAAATAATGACACGTCATAAAATTTTAAAGATAAC
1 AAAATAATGACACGTCATAAAATTTTAAAGATAAC
* * * * * *
90717560 AAAAT-ATTA-A-G-CAT--AGTTTTTAGGACCAAT
1 AAAATAATGACACGTCATAAAATTTTAAAGA-TAAC
90717590 AAAATAATGACACGTCATAAAATTTTAAAGATAAC
1 AAAATAATGACACGTCATAAAATTTTAAAGATAAC
90717625 AAAATA
1 AAAATA
90717631 TTATTATACA
Statistics
Matches: 52, Mismatches: 12, Indels: 14
0.67 0.15 0.18
Matches are distributed among these distances:
29 8 0.15
30 7 0.13
31 6 0.12
32 2 0.04
33 2 0.04
34 6 0.12
35 13 0.25
36 8 0.15
ACGTcount: A:0.53, C:0.10, G:0.09, T:0.27
Consensus pattern (35 bp):
AAAATAATGACACGTCATAAAATTTTAAAGATAAC
Found at i:90717599 original size:65 final size:66
Alignment explanation
Indices: 90717502--90717633 Score: 257
Period size: 65 Copynumber: 2.0 Consensus size: 66
90717492 TAATCCAAAA
90717502 AAGCATAGTTTTTAGGCACCAATAAAATAATGACACGTCATAAAATTTTAAAGATAACAAAATAT
1 AAGCATAGTTTTTAGGCACCAATAAAATAATGACACGTCATAAAATTTTAAAGATAACAAAATAT
90717567 T
66 T
90717568 AAGCATAGTTTTTAGG-ACCAATAAAATAATGACACGTCATAAAATTTTAAAGATAACAAAATAT
1 AAGCATAGTTTTTAGGCACCAATAAAATAATGACACGTCATAAAATTTTAAAGATAACAAAATAT
90717632 T
66 T
90717633 A
1 A
90717634 TTATACACTC
Statistics
Matches: 66, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
65 50 0.76
66 16 0.24
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.29
Consensus pattern (66 bp):
AAGCATAGTTTTTAGGCACCAATAAAATAATGACACGTCATAAAATTTTAAAGATAACAAAATAT
T
Found at i:90718275 original size:20 final size:20
Alignment explanation
Indices: 90718250--90718289 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
90718240 AATATTTTCT
*
90718250 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
90718270 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
90718290 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:90718292 original size:34 final size:35
Alignment explanation
Indices: 90718238--90718304 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
90718228 CAAACAGCAG
* *
90718238 AAAATATTTTCTAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
90718273 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
90718305 CATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:90718296 original size:14 final size:14
Alignment explanation
Indices: 90718273--90718312 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
90718263 ACAGAAAAGT
*
90718273 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
90718287 AAATCATTTTACGG
1 AAAACATTTTACAG
90718301 AAAACATTTTAC
1 AAAACATTTTAC
90718313 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:90718721 original size:21 final size:21
Alignment explanation
Indices: 90718697--90718736 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
90718687 TGGGGTTCAT
*
90718697 GGTTTGAGATTTTAA-ATTTAG
1 GGTTTAAG-TTTTAATATTTAG
90718718 GGTTTAAGTTTTAATATTT
1 GGTTTAAGTTTTAATATTT
90718737 TATATTTAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.28, C:0.00, G:0.20, T:0.53
Consensus pattern (21 bp):
GGTTTAAGTTTTAATATTTAG
Found at i:90718763 original size:28 final size:28
Alignment explanation
Indices: 90718705--90718783 Score: 70
Period size: 28 Copynumber: 2.8 Consensus size: 28
90718695 ATGGTTTGAG
* * *
90718705 ATTTTAAATTTAGGGTTTAAGTTTTAAT
1 ATTTTAAATTTAGAGTTTAAGGTCTAAT
* * *
90718733 ATTTTATATTTAGAGTTTAGGGTCTATT
1 ATTTTAAATTTAGAGTTTAAGGTCTAAT
* *
90718761 A-TTTAGCATTTAGAATTTAAGGT
1 ATTTTA-AATTTAGAGTTTAAGGT
90718784 TACGTATTCA
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
27 4 0.10
28 37 0.90
ACGTcount: A:0.30, C:0.03, G:0.16, T:0.51
Consensus pattern (28 bp):
ATTTTAAATTTAGAGTTTAAGGTCTAAT
Found at i:90719283 original size:20 final size:21
Alignment explanation
Indices: 90719260--90719299 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
90719250 TTAAACCTTA
90719260 AACTC-GAACCCTAAACCCCC
1 AACTCTGAACCCTAAACCCCC
*
90719280 AACTCTTGAACCTTAAACCC
1 AACTC-TGAACCCTAAACCC
90719300 AAACCCTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
22 12 0.71
ACGTcount: A:0.35, C:0.42, G:0.05, T:0.17
Consensus pattern (21 bp):
AACTCTGAACCCTAAACCCCC
Found at i:90721440 original size:43 final size:43
Alignment explanation
Indices: 90721390--90721471 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
90721380 ATTTCATTTC
**
90721390 TCATCTCATAATCATTTCTCATATTTGTCATTTCAATATTTTT
1 TCATCTCATAATCATTTCTCATATTTCCCATTTCAATATTTTT
* *
90721433 TCATCTCATATTCATTTCTCATCTTTCCCATTTCAATAT
1 TCATCTCATAATCATTTCTCATATTTCCCATTTCAATAT
90721472 CAATCACATA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.24, C:0.23, G:0.01, T:0.51
Consensus pattern (43 bp):
TCATCTCATAATCATTTCTCATATTTCCCATTTCAATATTTTT
Found at i:90730372 original size:3 final size:3
Alignment explanation
Indices: 90730366--90730399 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
90730356 TTCTTCTTTT
*
90730366 TCA TCA TCA TCA TCA TCA TCA TCC TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
90730400 ATTCACTTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.29, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:90734349 original size:43 final size:44
Alignment explanation
Indices: 90734290--90734372 Score: 132
Period size: 43 Copynumber: 1.9 Consensus size: 44
90734280 ATGTCATTCT
*
90734290 ACACACTTAAAGCCCCAAACACTATTAATAACCAAGGCCTAAAA
1 ACACACTTAAAGCCCCAAACACTATTAAAAACCAAGGCCTAAAA
* *
90734334 ACACATTTAAA-CCCCAAACACTATTAAAAACGAAGGCCT
1 ACACACTTAAAGCCCCAAACACTATTAAAAACCAAGGCCT
90734373 TTAGAGAACT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
43 26 0.72
44 10 0.28
ACGTcount: A:0.47, C:0.29, G:0.07, T:0.17
Consensus pattern (44 bp):
ACACACTTAAAGCCCCAAACACTATTAAAAACCAAGGCCTAAAA
Found at i:90750364 original size:131 final size:129
Alignment explanation
Indices: 90750110--90750442 Score: 431
Period size: 131 Copynumber: 2.6 Consensus size: 129
90750100 GAAAAATCGA
* ** * * *
90750110 AACCCAGCACGATAGAGCACGATTCCCTGAATTTTCAAACTTTGAACATTGCCTT-ATTTT--AG
1 AACCCAGCACGATAGGGCACGATTCCC-GAATTACCAAACATCGAACATTGCCTTCGTTTTAAAG
** * * *
90750172 AATTTAGAAAACATGAGTGAAATTCTAAAGGAATATTCGATTGTTTTGAACAAATGAGAAATTGC
65 AATTTTTAAAACATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGAGAAATTGC
* *
90750237 AACCCAGCACGATAGGGCACGATTCTCCGAATTACCGAACATCAAACATTGCCTTCGTTTTAAAG
1 AACCCAGCACGATAGGGCACGATTC-CCGAATTACCAAACATCGAACATTGCCTTCGTTTTAAAG
*
90750302 AATTTTTAAAGACATGAGTGAAATTCCAAAGGAATACTT-GATTATTTTGAACAAACGGGAAATT
65 AATTTTTAAA-ACATGAGTGAAATTCCAAAGGAATA-TTCGATTATTTTGAACAAACGAGAAATT
90750366 GC
128 GC
* * * *
90750368 AACCTAGCACGATAGGGCACGATTCCCCGAATTGCCTAATATCGAACATTGCCTTCGTTTTAAAG
1 AACCCAGCACGATAGGGCACGATT-CCCGAATTACCAAACATCGAACATTGCCTTCGTTTTAAAG
90750433 AATTTTTAAA
65 AATTTTTAAA
90750443 TGAATAATTA
Statistics
Matches: 180, Mismatches: 19, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
127 45 0.25
128 6 0.03
130 10 0.06
131 116 0.64
132 3 0.02
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (129 bp):
AACCCAGCACGATAGGGCACGATTCCCGAATTACCAAACATCGAACATTGCCTTCGTTTTAAAGA
ATTTTTAAAACATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGAGAAATTGC
Found at i:90750780 original size:53 final size:53
Alignment explanation
Indices: 90750722--90750828 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
90750712 AATGATATAC
90750722 AACAATGTATGGCACCATATAAATCAATCCACAAAACATGTACAAAACAAAAT
1 AACAATGTATGGCACCATATAAATCAATCCACAAAACATGTACAAAACAAAAT
90750775 AACAATGTATGGCACCATATAAATCAATCCACAAAACATGTACAAAACAAAAT
1 AACAATGTATGGCACCATATAAATCAATCCACAAAACATGTACAAAACAAAAT
90750828 A
1 A
90750829 GAATTTAGAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.53, C:0.21, G:0.07, T:0.19
Consensus pattern (53 bp):
AACAATGTATGGCACCATATAAATCAATCCACAAAACATGTACAAAACAAAAT
Found at i:90754456 original size:18 final size:18
Alignment explanation
Indices: 90754422--90754456 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
90754412 AACAGAGCAG
90754422 ATACAAAACATATATCAC
1 ATACAAAACATATATCAC
90754440 ATACAGAAACATA-ATCA
1 ATACA-AAACATATATCA
90754457 AATGCAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.57, C:0.20, G:0.03, T:0.20
Consensus pattern (18 bp):
ATACAAAACATATATCAC
Found at i:90758087 original size:21 final size:22
Alignment explanation
Indices: 90758058--90758104 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
90758048 CAGAAGGAGT
*
90758058 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
90758080 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
90758101 GAGT
1 GAGT
90758105 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:90769750 original size:33 final size:32
Alignment explanation
Indices: 90769709--90769776 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 32
90769699 AATAAAAGAA
90769709 GAAAGCCTCCAATAATCCACTTAGATTGCTCT
1 GAAAGCCTCCAATAATCCACTTAGATTGCTCT
*
90769741 GAAAGGCCTCCAATAATCCACTTAGATTGCTTT
1 GAAA-GCCTCCAATAATCCACTTAGATTGCTCT
90769774 GAA
1 GAA
90769777 TCAAAAGGGT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 4 0.12
33 30 0.88
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (32 bp):
GAAAGCCTCCAATAATCCACTTAGATTGCTCT
Found at i:90786765 original size:38 final size:37
Alignment explanation
Indices: 90786682--90786781 Score: 109
Period size: 38 Copynumber: 2.7 Consensus size: 37
90786672 ATTTAATACC
*
90786682 ATAAAATATTTATTATATTTATTTGTGTTTTTAATATA
1 ATAAAATATTTATTATATTTATTAGTGTTTTT-ATATA
90786720 ATAAAATATTTATTATATTTATGGTAGTGTTTTT-T-TA
1 ATAAAATATTTATTATATTTAT--TAGTGTTTTTATATA
*
90786757 ATATAAATACTTT-TTA-ATGTATTAG
1 ATA-AAATA-TTTATTATATTTATTAG
90786782 AAAACTTTAT
Statistics
Matches: 56, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
35 3 0.05
37 10 0.18
38 31 0.55
39 3 0.05
40 9 0.16
ACGTcount: A:0.36, C:0.01, G:0.08, T:0.55
Consensus pattern (37 bp):
ATAAAATATTTATTATATTTATTAGTGTTTTTATATA
Found at i:90786814 original size:24 final size:26
Alignment explanation
Indices: 90786778--90786828 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
90786768 TTTTAATGTA
90786778 TTAGAAAACTTTA-TT-TTAGTATTTT
1 TTAGAAAACTTTAGTTATTA-TATTTT
*
90786803 TTAGTAAA-TTTAGTTATTATATTTT
1 TTAGAAAACTTTAGTTATTATATTTT
90786828 T
1 T
90786829 AAAATAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
24 4 0.17
25 16 0.70
26 3 0.13
ACGTcount: A:0.31, C:0.02, G:0.08, T:0.59
Consensus pattern (26 bp):
TTAGAAAACTTTAGTTATTATATTTT
Found at i:90788820 original size:39 final size:39
Alignment explanation
Indices: 90788771--90788846 Score: 143
Period size: 39 Copynumber: 1.9 Consensus size: 39
90788761 CATTAAAAGT
*
90788771 AGTGATTAATTGTCCTTAGTTGCTCACCTTCGAAATTAA
1 AGTGATTAATTGTCCTTAGTTGCTCACCTTCAAAATTAA
90788810 AGTGATTAATTGTCCTTAGTTGCTCACCTTCAAAATT
1 AGTGATTAATTGTCCTTAGTTGCTCACCTTCAAAATT
90788847 GACACAGATT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.39
Consensus pattern (39 bp):
AGTGATTAATTGTCCTTAGTTGCTCACCTTCAAAATTAA
Found at i:90795753 original size:17 final size:17
Alignment explanation
Indices: 90795725--90795761 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
90795715 CTTTTACTTC
90795725 CATATAATATAATGC-A
1 CATATAATATAATGCTA
90795741 CATATATATATAATGCTA
1 CATATA-ATATAATGCTA
90795759 CAT
1 CAT
90795762 TGTATTGCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.32
17 9 0.47
18 4 0.21
ACGTcount: A:0.46, C:0.14, G:0.05, T:0.35
Consensus pattern (17 bp):
CATATAATATAATGCTA
Found at i:90800063 original size:21 final size:21
Alignment explanation
Indices: 90800035--90800112 Score: 93
Period size: 21 Copynumber: 3.7 Consensus size: 21
90800025 CCTGATCAGT
* *
90800035 ATACGACACATAAAGTGCCTA
1 ATACGACACACAAAGTGCCTG
* *
90800056 AAACGACACACAAGGTGCCTG
1 ATACGACACACAAAGTGCCTG
* *
90800077 ATACGACACACGAGGTGCCTG
1 ATACGACACACAAAGTGCCTG
*
90800098 ATACGACACATAAAG
1 ATACGACACACAAAG
90800113 NNNNNNNNNN
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 48 1.00
ACGTcount: A:0.40, C:0.26, G:0.21, T:0.14
Consensus pattern (21 bp):
ATACGACACACAAAGTGCCTG
Found at i:90800532 original size:21 final size:22
Alignment explanation
Indices: 90800493--90800534 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
90800483 ATATCACAAT
90800493 CTCATATATTCATATCAATTTC
1 CTCATATATTCATATCAATTTC
90800515 CTCATAT-TTCCA-ATCAATTT
1 CTCATATATT-CATATCAATTT
90800535 ATTTTTCAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.31, C:0.24, G:0.00, T:0.45
Consensus pattern (22 bp):
CTCATATATTCATATCAATTTC
Found at i:90800615 original size:15 final size:15
Alignment explanation
Indices: 90800590--90800647 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
90800580 TCATATATAT
90800590 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
90800606 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
90800621 AATAATTTCAATCAA
1 TATAAATTCAATCAA
90800636 TATAAATTCAAT
1 TATAAATTCAAT
90800648 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:90802305 original size:19 final size:22
Alignment explanation
Indices: 90802281--90802327 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 22
90802271 ATCCTTTCCA
90802281 CTAATTACT-CTTAATT-AAG-
1 CTAATTACTACTTAATTAAAGT
*
90802300 CTAATT-TTACTTAATTAAAGT
1 CTAATTACTACTTAATTAAAGT
90802321 CTAATTA
1 CTAATTA
90802328 ACCACTCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
18 1 0.04
19 13 0.57
20 3 0.13
21 6 0.26
ACGTcount: A:0.38, C:0.13, G:0.04, T:0.45
Consensus pattern (22 bp):
CTAATTACTACTTAATTAAAGT
Found at i:90803512 original size:17 final size:19
Alignment explanation
Indices: 90803490--90803528 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
90803480 TATATAAAAC
90803490 ATAATA-CTAA-AATATAT
1 ATAATATCTAAGAATATAT
*
90803507 ATAATATGTAAGAATATAT
1 ATAATATCTAAGAATATAT
90803526 ATA
1 ATA
90803529 TGCAATAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 3 0.16
19 10 0.53
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (19 bp):
ATAATATCTAAGAATATAT
Found at i:90803645 original size:20 final size:20
Alignment explanation
Indices: 90803605--90803645 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
90803595 TATGATATTA
* *
90803605 AAAGTATGTATACGTAGTAT
1 AAAGAATGTATACGTAATAT
*
90803625 AAAGAATGTATATGTAATAT
1 AAAGAATGTATACGTAATAT
90803645 A
1 A
90803646 GTATTAAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.02, G:0.17, T:0.34
Consensus pattern (20 bp):
AAAGAATGTATACGTAATAT
Found at i:90803819 original size:16 final size:18
Alignment explanation
Indices: 90803779--90803825 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
90803769 AATATTTAAA
* *
90803779 AATAATAATAGTAAATAT
1 AATATTAATATTAAATAT
90803797 AATATTAATATTAAATA-
1 AATATTAATATTAAATAT
90803814 AA-ATTAATATTA
1 AATATTAATATTA
90803826 CAAATTTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
16 10 0.37
17 2 0.07
18 15 0.56
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (18 bp):
AATATTAATATTAAATAT
Found at i:90809289 original size:46 final size:46
Alignment explanation
Indices: 90809235--90809461 Score: 312
Period size: 46 Copynumber: 4.9 Consensus size: 46
90809225 GTGTGCTCTC
*
90809235 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
* *
90809281 TAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
*
90809327 TGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * ** *
90809373 TGACATGAAAAGAATAAGACCATGGTTGAAAAATACCATGGCAACA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * * * *
90809419 TGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
90809462 TCACGTCAAA
Statistics
Matches: 164, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 163 0.99
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:90809767 original size:23 final size:25
Alignment explanation
Indices: 90809722--90809768 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
90809712 AATAAATATA
*
90809722 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
90809747 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
90809769 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:90816035 original size:13 final size:14
Alignment explanation
Indices: 90816017--90816049 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
90816007 GTTGCTGTAT
90816017 TTTTTTTTTA-TGA
1 TTTTTTTTTAGTGA
*
90816030 TTTTTTTTTAGTTA
1 TTTTTTTTTAGTGA
90816044 TTTTTT
1 TTTTTT
90816050 CACCAATCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.12, C:0.00, G:0.06, T:0.82
Consensus pattern (14 bp):
TTTTTTTTTAGTGA
Found at i:90819246 original size:6 final size:6
Alignment explanation
Indices: 90819237--90819262 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
90819227 AGAAGAAGAG
90819237 GGTTTT GGTTTT GGTTTT GGTTTT GG
1 GGTTTT GGTTTT GGTTTT GGTTTT GG
90819263 AGGATATAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.38, T:0.62
Consensus pattern (6 bp):
GGTTTT
Found at i:90821255 original size:30 final size:29
Alignment explanation
Indices: 90821189--90821255 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 29
90821179 AATGAATAAA
*
90821189 TTTTTAATAGAAAGAGTTAGTTTTCTTTT
1 TTTTTAATAGAAAGAGTTAATTTTCTTTT
* *
90821218 TAATTTAATATAAAGA-TTAATTTGTCTATTT
1 T-TTTTAATAGAAAGAGTTAATTT-TCT-TTT
90821249 TTTTTAA
1 TTTTTAA
90821256 CAAAAATGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
29 7 0.23
30 20 0.65
31 4 0.13
ACGTcount: A:0.33, C:0.03, G:0.09, T:0.55
Consensus pattern (29 bp):
TTTTTAATAGAAAGAGTTAATTTTCTTTT
Found at i:90825073 original size:14 final size:13
Alignment explanation
Indices: 90825049--90825082 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
90825039 AATTAATTAT
*
90825049 TAATTTAATTAGA
1 TAATTTAATTAAA
90825062 TAATTCTAATTAAA
1 TAATT-TAATTAAA
90825076 TAATTTA
1 TAATTTA
90825083 TATAACTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (13 bp):
TAATTTAATTAAA
Found at i:90830445 original size:41 final size:40
Alignment explanation
Indices: 90830385--90830589 Score: 220
Period size: 41 Copynumber: 5.0 Consensus size: 40
90830375 TGATTGAATG
* * *
90830385 TAATACAGACGTTACGTCTAGCAGGCTTAATGCCGGTGAA
1 TAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGAA
90830425 GTAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG-A
1 -TAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGAA
90830465 TACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG-A
1 TA-A-TTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGAA
* * *
90830506 TACATTTCAGACTATATGTCTAGCAGGC-TAAGTGCCGGTGTAC
1 TA-A-TTCAGACTTTAAGTCTAGCAGGCTTAA-TGCCGGTG-AA
* * **
90830549 TGAA-TCAGGCTTTAAGCCTAGCAGGCAAAATGCCGGTGAA
1 T-AATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGAA
90830589 T
1 T
90830590 CTGTTTAAAT
Statistics
Matches: 145, Mismatches: 12, Indels: 15
0.84 0.07 0.09
Matches are distributed among these distances:
39 2 0.01
40 7 0.05
41 131 0.90
42 2 0.01
43 2 0.01
44 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (40 bp):
TAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGAA
Found at i:90838080 original size:41 final size:41
Alignment explanation
Indices: 90837993--90838139 Score: 205
Period size: 41 Copynumber: 3.6 Consensus size: 41
90837983 CAGACGTTAC
90837993 GTCTAGCAGGCTTAATGCCGCGTGAAGTA-A-TTCAGACTTTAA-
1 GTCTAGCAGGCTTAATGCCG-GTG-A-TACATTTCAGAC-TTAAT
90838035 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTAAT
1 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTAAT
90838076 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGAC-TATAT
1 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTA-AT
90838117 GTCTAGCAGGC-TAAGTGCCGGTG
1 GTCTAGCAGGCTTAA-TGCCGGTG
90838140 TACTGAATCA
Statistics
Matches: 100, Mismatches: 0, Indels: 11
0.90 0.00 0.10
Matches are distributed among these distances:
39 2 0.02
40 11 0.11
41 67 0.67
42 20 0.20
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (41 bp):
GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTAAT
Found at i:90838164 original size:82 final size:81
Alignment explanation
Indices: 90837995--90838181 Score: 204
Period size: 82 Copynumber: 2.3 Consensus size: 81
90837985 GACGTTACGT
*
90837995 CTAGCAGGCTTAATGCCGCGTGAAGTAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGAT
1 CTAGCAGGCTTAATGCCG-GTG-AGTAATTCAGACTATAAGTCTAGCAGGCTTAATGCCGGTGAT
* *
90838060 ACATTTCAGACTTAATGT
64 ACATATCAGACTTAATGC
*
90838078 CTAGCAGGCTTAATGCCGGTGA-TACATTTCAGACTATATGTCTAGCAGGC-TAAGTGCCGGTG-
1 CTAGCAGGCTTAATGCCGGTGAGTA-A-TTCAGACTATAAGTCTAGCAGGCTTAA-TGCCGGTGA
*
90838140 TAC-TGAATCAGGCTTTAA-GC
63 TACAT--ATCAGAC-TTAATGC
**
90838160 CTAGCAGGCAAAATGCCGGTGA
1 CTAGCAGGCTTAATGCCGGTGA
90838182 ATCTGTTTAA
Statistics
Matches: 91, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
80 3 0.03
81 8 0.09
82 58 0.64
83 22 0.24
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (81 bp):
CTAGCAGGCTTAATGCCGGTGAGTAATTCAGACTATAAGTCTAGCAGGCTTAATGCCGGTGATAC
ATATCAGACTTAATGC
Found at i:90844709 original size:29 final size:29
Alignment explanation
Indices: 90844639--90844709 Score: 92
Period size: 28 Copynumber: 2.5 Consensus size: 29
90844629 CAATGTTAAC
*
90844639 TATTTTTGAATTTTTATTAACTTTTTATA
1 TATTTTTGAATTTTTAATAACTTTTTATA
* *
90844668 T-TTTTTGAATTTTAAAT-ACTTTTTTTA
1 TATTTTTGAATTTTTAATAACTTTTTATA
*
90844695 TATTTTTAAATTTTT
1 TATTTTTGAATTTTT
90844710 TTGTTGACAT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
27 10 0.28
28 25 0.69
29 1 0.03
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.68
Consensus pattern (29 bp):
TATTTTTGAATTTTTAATAACTTTTTATA
Found at i:90850558 original size:19 final size:19
Alignment explanation
Indices: 90850534--90850581 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
90850524 TTTTGTCACT
*
90850534 GTATTTCATTGTTTTGATA
1 GTATTTCATTGTTTTAATA
90850553 GTATTTCATTGTTTTAATA
1 GTATTTCATTGTTTTAATA
90850572 -TCATTTCATT
1 GT-ATTTCATT
90850582 ATTATATTGC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 1 0.04
19 26 0.96
ACGTcount: A:0.23, C:0.08, G:0.10, T:0.58
Consensus pattern (19 bp):
GTATTTCATTGTTTTAATA
Found at i:90851043 original size:19 final size:19
Alignment explanation
Indices: 90851019--90851056 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
90851009 TTTTAAAAAG
90851019 TTTTTTTAAATTATTTTAA
1 TTTTTTTAAATTATTTTAA
90851038 TTTTTTTAAATTATTTTAA
1 TTTTTTTAAATTATTTTAA
90851057 AAAATTGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
TTTTTTTAAATTATTTTAA
Found at i:90851044 original size:9 final size:10
Alignment explanation
Indices: 90851022--90851057 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
90851012 TAAAAAGTTT
90851022 TTTTAAATTA
1 TTTTAAATTA
*
90851032 TTTT-AATTT
1 TTTTAAATTA
90851041 TTTTAAATTA
1 TTTTAAATTA
90851051 TTTTAAA
1 TTTTAAA
90851058 AAATTGTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (10 bp):
TTTTAAATTA
Found at i:90855268 original size:103 final size:100
Alignment explanation
Indices: 90855111--90855352 Score: 298
Period size: 103 Copynumber: 2.4 Consensus size: 100
90855101 TAGTGTTTAG
*
90855111 TAGTTTAG-GATTTTGTGATTTTTTAGTAATGTAATTTTTTTAAAAAAAAATTATAGCTATTTTG
1 TAGTTTAGTG-TTTTGTGATTTTTTAGTAATGT-A--TTTTAAAAAAAAAATTATAGCTATTTTG
*
90855175 TTAGTAATTTATAATTAGGTTATATAAATTT-TTAATGTT
62 TTAGTAACTTATAATTAGGTTATAT-AATTTGTTAATGTT
*
90855214 TAG-TTATGTGTTTTGTGATTTTTTAGTAATGTA-TTTAAAAAATAATAATTTTATAGTTATTTT
1 TAGTTTA-GTGTTTTGTGATTTTTTAGTAATGTATTTTAAAAAA-AA-AA--TTATAGCTATTTT
* *
90855277 GTTAGTAACTTATGATTAGGTTATATAATTTGTTAGTGTT
61 GTTAGTAACTTATAATTAGGTTATATAATTTGTTAATGTT
90855317 TAGTTTAGTGTTTTGTGATTTTTT--TAATGTAATTTT
1 TAGTTTAGTGTTTTGTGATTTTTTAGTAATGT-ATTTT
90855353 TATATAATGT
Statistics
Matches: 124, Mismatches: 5, Indels: 20
0.83 0.03 0.13
Matches are distributed among these distances:
99 8 0.06
100 2 0.02
101 8 0.06
102 10 0.08
103 92 0.74
104 4 0.03
ACGTcount: A:0.30, C:0.01, G:0.14, T:0.55
Consensus pattern (100 bp):
TAGTTTAGTGTTTTGTGATTTTTTAGTAATGTATTTTAAAAAAAAAATTATAGCTATTTTGTTAG
TAACTTATAATTAGGTTATATAATTTGTTAATGTT
Found at i:90855472 original size:27 final size:27
Alignment explanation
Indices: 90855424--90855478 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
90855414 GACAGGCCCC
** *
90855424 ACCAGTCGCGCCTGTCAAATAGGCACA
1 ACCAGTCGCGCCTACCAAATAGACACA
*
90855451 ACCAGTCGCGCCTACCAGATAGACACA
1 ACCAGTCGCGCCTACCAAATAGACACA
90855478 A
1 A
90855479 TCTAGCCGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.33, C:0.35, G:0.20, T:0.13
Consensus pattern (27 bp):
ACCAGTCGCGCCTACCAAATAGACACA
Found at i:90858966 original size:13 final size:14
Alignment explanation
Indices: 90858948--90858977 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
90858938 AAGTGAATGC
90858948 TTTACT-TTTTTTT
1 TTTACTCTTTTTTT
90858961 TTTACTCTTTTTTT
1 TTTACTCTTTTTTT
90858975 TTT
1 TTT
90858978 TTTTGGTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.07, C:0.10, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTACTCTTTTTTT
Done.