Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 284 of 290
Found at i:90875032 original size:14 final size:14
Alignment explanation
Indices: 90875013--90875043 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
90875003 GTTCAAGTTC
*
90875013 GTTCGAGATTTAGG
1 GTTCGAAATTTAGG
90875027 GTTCGAAATTTAGG
1 GTTCGAAATTTAGG
90875041 GTT
1 GTT
90875044 TGGGTTCAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.06, G:0.32, T:0.39
Consensus pattern (14 bp):
GTTCGAAATTTAGG
Found at i:90878486 original size:35 final size:36
Alignment explanation
Indices: 90878437--90878515 Score: 133
Period size: 35 Copynumber: 2.2 Consensus size: 36
90878427 ATGTTTTGGA
*
90878437 TACTCCAAGACCTGAAGAGAATGAAAACGAATCTAT
1 TACTGCAAGACCTGAAGAGAATGAAAACGAATCTAT
90878473 TACTGCAA-ACCTGAAGAGAATGAAAACGAATCTAT
1 TACTGCAAGACCTGAAGAGAATGAAAACGAATCTAT
*
90878508 TGCTGCAA
1 TACTGCAA
90878516 CCCGAGAAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
35 34 0.83
36 7 0.17
ACGTcount: A:0.43, C:0.19, G:0.18, T:0.20
Consensus pattern (36 bp):
TACTGCAAGACCTGAAGAGAATGAAAACGAATCTAT
Found at i:90878660 original size:78 final size:77
Alignment explanation
Indices: 90878542--90878701 Score: 284
Period size: 78 Copynumber: 2.1 Consensus size: 77
90878532 ATGGGACAAT
* *
90878542 GCTAATTACATGTGCATGGCCACATATTGAATGGTTTATCTGATGGTTTGTTTGACACTTACCAA
1 GCTAACTACATGTGCATGGCCACATATTGAATGGTTTATCTGATGGTTTGTTCGACACTTACCAA
90878607 AACGAGGTCACC
66 AACGAGGTCACC
*
90878619 GCTAACTACATGTGCATGGGCCACATATTGTATGGTTTATCTGATGGTTTGTTCGACACTTACCA
1 GCTAACTACATGTGCAT-GGCCACATATTGAATGGTTTATCTGATGGTTTGTTCGACACTTACCA
90878684 AAACGAGGTCACC
65 AAACGAGGTCACC
90878697 GCTAA
1 GCTAA
90878702 AGAATTATGG
Statistics
Matches: 79, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
77 16 0.20
78 63 0.80
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (77 bp):
GCTAACTACATGTGCATGGCCACATATTGAATGGTTTATCTGATGGTTTGTTCGACACTTACCAA
AACGAGGTCACC
Found at i:90881371 original size:125 final size:125
Alignment explanation
Indices: 90881144--90881375 Score: 333
Period size: 125 Copynumber: 1.9 Consensus size: 125
90881134 AAAACCTCTC
*
90881144 AAAATAAGGAAATACTTCGTGTTTGGAAATTCGAGAAATTATGCCCTAACGTGCTGGGTTTCGAT
1 AAAATAAGGAAATACTTCGTGTTTGGAAATTCGAGAAATCATGCCCTAACGTGCTGGGTTTCGAT
* * *
90881209 TTTCCGTTTGACCGAATAACTAAATATCCTTTCGAAATTTCATGCATATTTTCTTAAATT
66 TTACCGTTCGACCGAATAACCAAATATCCTTTCGAAATTTCATGCATATTTTCTTAAATT
* * * * *
90881269 AAAATGAGGCAATATTTTGTGTTTGGAAATTCGAGAAATCGTGCCC-AATCGTGCTGGGTTTCGA
1 AAAATAAGGAAATACTTCGTGTTTGGAAATTCGAGAAATCATGCCCTAA-CGTGCTGGGTTTCGA
* *
90881333 TTTACCGTTCGACC-AGATAGCCAAATATCCTTTTGAAATTTCA
65 TTTACCGTTCGACCGA-ATAACCAAATATCCTTTCGAAATTTCA
90881376 AATGCATGAG
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
124 3 0.03
125 91 0.97
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (125 bp):
AAAATAAGGAAATACTTCGTGTTTGGAAATTCGAGAAATCATGCCCTAACGTGCTGGGTTTCGAT
TTACCGTTCGACCGAATAACCAAATATCCTTTCGAAATTTCATGCATATTTTCTTAAATT
Found at i:90887869 original size:27 final size:28
Alignment explanation
Indices: 90887792--90887897 Score: 80
Period size: 28 Copynumber: 3.8 Consensus size: 28
90887782 AAATAATAAA
*
90887792 AAAAATTAATATTAAATAT-TAAAA-ATAT
1 AAAAATTAATA--AAATATATAAAACTTAT
* *
90887820 AAAAAGT-A-AAAATTTATATAAACTTAT
1 AAAAATTAATAAAATATATA-AAACTTAT
90887847 AAAAATTAATAAAATAT-TAAAACTT-T
1 AAAAATTAATAAAATATATAAAACTTAT
* *
90887873 CAATAAATTTATAAAAAATATAAAA
1 -AA-AAATTAATAAAATATATAAAA
90887898 AAATTCATAA
Statistics
Matches: 63, Mismatches: 7, Indels: 15
0.74 0.08 0.18
Matches are distributed among these distances:
24 5 0.08
25 2 0.03
26 5 0.08
27 18 0.29
28 22 0.35
29 11 0.17
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.33
Consensus pattern (28 bp):
AAAAATTAATAAAATATATAAAACTTAT
Found at i:90887909 original size:10 final size:9
Alignment explanation
Indices: 90887811--90887959 Score: 65
Period size: 9 Copynumber: 15.9 Consensus size: 9
90887801 TATTAAATAT
90887811 TAAAAA-TA
1 TAAAAATTA
*
90887819 TAAAAAGTA
1 TAAAAATTA
*
90887828 -AAAATTTA
1 TAAAAATTA
*
90887836 TATAAACTTA
1 TA-AAAATTA
90887846 TAAAAATTA
1 TAAAAATTA
90887855 -ATAAAA-TA
1 TA-AAAATTA
*
90887863 TTAAAACTT-
1 -TAAAAATTA
90887872 TCAATAAATTTA
1 T-AA-AAA-TTA
90887884 TAAAAAATATA
1 T-AAAAAT-TA
*
90887895 AAAAAATTCA
1 TAAAAATT-A
90887905 TAAAAACTTA
1 TAAAAA-TTA
*
90887915 TAAATATTA
1 TAAAAATTA
**
90887924 TAAAGCTTA
1 TAAAAATTA
*
90887933 TGAATAATTA
1 T-AAAAATTA
**
90887943 TAAAGCTTA
1 TAAAAATTA
90887952 TAAAAATT
1 TAAAAATT
90887960 TTAATAAGAG
Statistics
Matches: 106, Mismatches: 20, Indels: 29
0.68 0.13 0.19
Matches are distributed among these distances:
8 16 0.15
9 41 0.39
10 37 0.35
11 9 0.08
12 3 0.03
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.34
Consensus pattern (9 bp):
TAAAAATTA
Found at i:90887926 original size:19 final size:18
Alignment explanation
Indices: 90887907--90887955 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 18
90887897 AAAATTCATA
90887907 AAAACTTATAAATATTAT
1 AAAACTTATAAATATTAT
* *
90887925 AAAGCTTATGAATAATTAT
1 AAAACTTATAAAT-ATTAT
*
90887944 AAAGCTTATAAA
1 AAAACTTATAAA
90887956 AATTTTAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 11 0.41
19 16 0.59
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.35
Consensus pattern (18 bp):
AAAACTTATAAATATTAT
Found at i:90888158 original size:116 final size:116
Alignment explanation
Indices: 90887954--90888189 Score: 463
Period size: 116 Copynumber: 2.0 Consensus size: 116
90887944 AAAGCTTATA
*
90887954 AAAATTTTAATAAGAGGGCTCAACTAGAGGGGTTTAATTGATTTTTTCGATTAATGAGTGTTTAA
1 AAAATTTTAATAAGAGGGCTCAACTAGAGGGGTTTAATTGATTTTTTCAATTAATGAGTGTTTAA
90888019 TTGAATGCTAATTTAGTGCAATGGCTCAACTGATTCTTTCGCTTTTTTCTT
66 TTGAATGCTAATTTAGTGCAATGGCTCAACTGATTCTTTCGCTTTTTTCTT
90888070 AAAATTTTAATAAGAGGGCTCAACTAGAGGGGTTTAATTGATTTTTTCAATTAATGAGTGTTTAA
1 AAAATTTTAATAAGAGGGCTCAACTAGAGGGGTTTAATTGATTTTTTCAATTAATGAGTGTTTAA
90888135 TTGAATGCTAATTTAGTGCAATGGCTCAACTGATTCTTTCGCTTTTTTCTT
66 TTGAATGCTAATTTAGTGCAATGGCTCAACTGATTCTTTCGCTTTTTTCTT
90888186 AAAA
1 AAAA
90888190 GCCTTTTGTA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
116 119 1.00
ACGTcount: A:0.29, C:0.11, G:0.18, T:0.42
Consensus pattern (116 bp):
AAAATTTTAATAAGAGGGCTCAACTAGAGGGGTTTAATTGATTTTTTCAATTAATGAGTGTTTAA
TTGAATGCTAATTTAGTGCAATGGCTCAACTGATTCTTTCGCTTTTTTCTT
Found at i:90892920 original size:20 final size:20
Alignment explanation
Indices: 90892895--90892932 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
90892885 AAATATAAAT
90892895 ATTTTTAAAAATATTTATTA
1 ATTTTTAAAAATATTTATTA
*
90892915 ATTTTTAAAATTATTTAT
1 ATTTTTAAAAATATTTAT
90892933 AAAATAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
ATTTTTAAAAATATTTATTA
Found at i:90896342 original size:24 final size:24
Alignment explanation
Indices: 90896307--90896355 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
90896297 GAGGATGACC
* *
90896307 CAGAATTGGCAA-TTGCTTTGATAG
1 CAGAATTAGCAACTTG-TTTCATAG
90896331 CAGAATTAGCAACTTGTTTCATAG
1 CAGAATTAGCAACTTGTTTCATAG
90896355 C
1 C
90896356 CATATCTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 19 0.86
25 3 0.14
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (24 bp):
CAGAATTAGCAACTTGTTTCATAG
Found at i:90898711 original size:19 final size:19
Alignment explanation
Indices: 90898687--90898723 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
90898677 TATATAAGAT
90898687 TTTAATCTT-TGTAAAAATG
1 TTTAAT-TTGTGTAAAAATG
90898706 TTTAATTTGTGTAAAAAT
1 TTTAATTTGTGTAAAAAT
90898724 TAGGTGAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 2 0.12
19 15 0.88
ACGTcount: A:0.38, C:0.03, G:0.11, T:0.49
Consensus pattern (19 bp):
TTTAATTTGTGTAAAAATG
Found at i:90899333 original size:20 final size:20
Alignment explanation
Indices: 90899304--90899346 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
90899294 AGTAAAAGTC
*
90899304 TAATGTGATATCAAAATTTT
1 TAATGAGATATCAAAATTTT
*
90899324 TAATGAGATATCAATATTTT
1 TAATGAGATATCAAAATTTT
90899344 TAA
1 TAA
90899347 GGTGAAACCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.42, C:0.05, G:0.09, T:0.44
Consensus pattern (20 bp):
TAATGAGATATCAAAATTTT
Found at i:90899404 original size:20 final size:19
Alignment explanation
Indices: 90899357--90899404 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
90899347 GGTGAAACCG
* *
90899357 AAATTTCTAACCGTTACCA
1 AAATTTTTAACCGGTACCA
*
90899376 ACA-TTTTAACACGGTACCA
1 AAATTTTTAAC-CGGTACCA
90899395 AAATTTTTAA
1 AAATTTTTAA
90899405 AATGTGTTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 6 0.26
19 11 0.48
20 6 0.26
ACGTcount: A:0.40, C:0.21, G:0.06, T:0.33
Consensus pattern (19 bp):
AAATTTTTAACCGGTACCA
Found at i:90902437 original size:20 final size:20
Alignment explanation
Indices: 90902408--90902453 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
90902398 CAATTATTCG
90902408 ATAACAGTCAGTATCTTTCA
1 ATAACAGTCAGTATCTTTCA
* * *
90902428 CTAACGGTCAGTATTTTTCA
1 ATAACAGTCAGTATCTTTCA
90902448 ATAACA
1 ATAACA
90902454 ATCATTTAAT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.35, C:0.20, G:0.11, T:0.35
Consensus pattern (20 bp):
ATAACAGTCAGTATCTTTCA
Found at i:90902513 original size:22 final size:22
Alignment explanation
Indices: 90902469--90902513 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
90902459 TTAATCATTA
* **
90902469 TTATTCAGTATCAGTCATTTAT
1 TTATTCAGTAACAGTCAAATAT
90902491 TTATTCAGTAACAGTCAAATAT
1 TTATTCAGTAACAGTCAAATAT
90902513 T
1 T
90902514 CGATAGCAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.44
Consensus pattern (22 bp):
TTATTCAGTAACAGTCAAATAT
Found at i:90902656 original size:6 final size:6
Alignment explanation
Indices: 90902645--90902682 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
90902635 GAAATACACC
*
90902645 GTAACA GTAACA GTAACA GTAGCA GTAACA GTAACA GT
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GT
90902683 CAGATACAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.45, C:0.16, G:0.21, T:0.18
Consensus pattern (6 bp):
GTAACA
Found at i:90903739 original size:17 final size:17
Alignment explanation
Indices: 90903676--90903744 Score: 57
Period size: 17 Copynumber: 3.9 Consensus size: 17
90903666 TTTTTTCCTT
* *
90903676 TTTCTTTTCTTTCTTCC
1 TTTCTTTTGTTTCTTTC
* *
90903693 TTCCTTCTCTGTTTCGTTC
1 TTTCTT-T-TGTTTCTTTC
* * *
90903712 CTTATTCTGTTTCTTTC
1 TTTCTTTTGTTTCTTTC
90903729 TTTCTTTTGTTTCTTT
1 TTTCTTTTGTTTCTTT
90903745 ACTTAACTAT
Statistics
Matches: 38, Mismatches: 12, Indels: 4
0.70 0.22 0.07
Matches are distributed among these distances:
17 27 0.71
18 1 0.03
19 10 0.26
ACGTcount: A:0.01, C:0.25, G:0.06, T:0.68
Consensus pattern (17 bp):
TTTCTTTTGTTTCTTTC
Found at i:90910573 original size:12 final size:13
Alignment explanation
Indices: 90910550--90910578 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
90910540 CAATTGAATC
90910550 ATTTCTCATTTTT
1 ATTTCTCATTTTT
90910563 ATTTC-CATTTTT
1 ATTTCTCATTTTT
90910575 ATTT
1 ATTT
90910579 TTGAGAAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.17, C:0.14, G:0.00, T:0.69
Consensus pattern (13 bp):
ATTTCTCATTTTT
Found at i:90914553 original size:18 final size:18
Alignment explanation
Indices: 90914520--90914555 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
90914510 TTTTTTTATT
*
90914520 TTTATTTGAGATAAAAAA
1 TTTATTTGAGAAAAAAAA
*
90914538 TTTATTTGATAAAAAAAA
1 TTTATTTGAGAAAAAAAA
90914556 AACCTATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TTTATTTGAGAAAAAAAA
Found at i:90915309 original size:20 final size:19
Alignment explanation
Indices: 90915286--90915338 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 19
90915276 AAAAAAAGTC
90915286 AAATTCAAATTAAAATACTG
1 AAATTCAAA-TAAAATACTG
* *
90915306 AAATTCAGGATAAAATGCTG
1 AAATTCA-AATAAAATACTG
90915326 AAATTCAAGATAA
1 AAATTCAA-ATAA
90915339 GAGTACTGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 27 0.96
21 1 0.04
ACGTcount: A:0.53, C:0.09, G:0.11, T:0.26
Consensus pattern (19 bp):
AAATTCAAATAAAATACTG
Found at i:90923505 original size:25 final size:25
Alignment explanation
Indices: 90923443--90923508 Score: 105
Period size: 25 Copynumber: 2.6 Consensus size: 25
90923433 ACTTTAGCGC
*
90923443 GCTCTCTGATAATTAGCACATTAGT
1 GCTCTCTGATTATTAGCACATTAGT
*
90923468 GCTCTCTGATTATTAGCACGTTAGT
1 GCTCTCTGATTATTAGCACATTAGT
*
90923493 GCTCTCTGTTTATTAG
1 GCTCTCTGATTATTAG
90923509 TGCATAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.21, C:0.20, G:0.18, T:0.41
Consensus pattern (25 bp):
GCTCTCTGATTATTAGCACATTAGT
Found at i:90926636 original size:15 final size:14
Alignment explanation
Indices: 90926585--90926637 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 14
90926575 TTTGGTTAAG
*
90926585 ATTAAAAATTTCAAA
1 ATTAAAAATAT-AAA
90926600 ATTTAAAAATATAAA
1 A-TTAAAAATATAAA
*
90926615 GACTAAAAATGATAAA
1 -ATTAAAAAT-ATAAA
90926631 ATTAAAA
1 ATTAAAA
90926638 TACATGTACT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
15 17 0.53
16 15 0.47
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.28
Consensus pattern (14 bp):
ATTAAAAATATAAA
Found at i:90931799 original size:21 final size:20
Alignment explanation
Indices: 90931761--90931801 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
90931751 TTTTTTTATG
90931761 ATTTTAAATTTTATTATTTA
1 ATTTTAAATTTTATTATTTA
90931781 ATTTT-AATTATTCATTATTTA
1 ATTTTAAATT-TT-ATTATTTA
90931802 TTGTCAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 7 0.37
21 8 0.42
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (20 bp):
ATTTTAAATTTTATTATTTA
Found at i:90932347 original size:21 final size:20
Alignment explanation
Indices: 90932284--90932349 Score: 53
Period size: 21 Copynumber: 3.1 Consensus size: 20
90932274 ATAAATATAC
*
90932284 AATTAGATTAAAAATTCTAAA
1 AATTA-ATTAAAAATTATAAA
* * *
90932305 AA-TAAATAAAAGTTTTAAAAA
1 AATTAATTAAAA--ATTATAAA
90932326 AATTAATTAAAAATATATAAA
1 AATTAATTAAAAAT-TATAAA
90932347 AAT
1 AAT
90932350 AGAATAAATA
Statistics
Matches: 34, Mismatches: 7, Indels: 8
0.69 0.14 0.16
Matches are distributed among these distances:
19 6 0.18
20 3 0.09
21 17 0.50
22 8 0.24
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.32
Consensus pattern (20 bp):
AATTAATTAAAAATTATAAA
Found at i:90932846 original size:60 final size:60
Alignment explanation
Indices: 90932773--90932892 Score: 204
Period size: 60 Copynumber: 2.0 Consensus size: 60
90932763 CATCCACATA
* **
90932773 AACTAAAACATACAAGTAGAGGTAGGCGTAACACGAAAAAACAAGGGCATTTCAGACTTT
1 AACTAAAACATACAAGTAGAGGTAGGCGTAACACGAAAAAACAAGGACACATCAGACTTT
*
90932833 AACTAAAACATACAAGTAGAGGTAGGCGTAACACGAACAAACAAGGACACATCAGACTTT
1 AACTAAAACATACAAGTAGAGGTAGGCGTAACACGAAAAAACAAGGACACATCAGACTTT
90932893 GACAAAAGAA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.46, C:0.18, G:0.19, T:0.17
Consensus pattern (60 bp):
AACTAAAACATACAAGTAGAGGTAGGCGTAACACGAAAAAACAAGGACACATCAGACTTT
Found at i:90932911 original size:60 final size:60
Alignment explanation
Indices: 90932773--90932913 Score: 176
Period size: 60 Copynumber: 2.4 Consensus size: 60
90932763 CATCCACATA
* * * **
90932773 AACTAAAACATACAAGTAGAGGTAGGCGTAACACGAAAAAACAAGGGCATTTCAGACTTT
1 AACTAAAAAAAACAAGTAGAGGTAGGCGTAACACGAAAAAACAAGGACACATCAGACTTT
* * *
90932833 AACTAAAACATACAAGTAGAGGTAGGCGTAACACGAACAAACAAGGACACATCAGACTTT
1 AACTAAAAAAAACAAGTAGAGGTAGGCGTAACACGAAAAAACAAGGACACATCAGACTTT
* *
90932893 GAC-AAAAGAAAACTAGTAGAG
1 AACTAAAA-AAAACAAGTAGAG
90932914 AGAAGAAAAT
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
59 4 0.06
60 68 0.94
ACGTcount: A:0.48, C:0.17, G:0.20, T:0.16
Consensus pattern (60 bp):
AACTAAAAAAAACAAGTAGAGGTAGGCGTAACACGAAAAAACAAGGACACATCAGACTTT
Found at i:90937611 original size:61 final size:61
Alignment explanation
Indices: 90937544--90937661 Score: 146
Period size: 61 Copynumber: 1.9 Consensus size: 61
90937534 TTTTTTAAAA
* ** * * * **
90937544 TTTTTAGAATTAGAACTAAGTTGACAAATTTTGTAAATGTTGAGGGCTAAATTTATTCAAT
1 TTTTTAGAATTAGAACAAAAATAAAAAATTTTGCAAACATTGAGGGCTAAATTTATTCAAT
* *
90937605 TTTTTAGTATTCGAACAAAAATAAAAAATTTTGCAAACATTGAGGGCTAAATTTATT
1 TTTTTAGAATTAGAACAAAAATAAAAAATTTTGCAAACATTGAGGGCTAAATTTATT
90937662 ATTAGACTAA
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
61 47 1.00
ACGTcount: A:0.39, C:0.08, G:0.14, T:0.39
Consensus pattern (61 bp):
TTTTTAGAATTAGAACAAAAATAAAAAATTTTGCAAACATTGAGGGCTAAATTTATTCAAT
Found at i:90941739 original size:19 final size:19
Alignment explanation
Indices: 90941708--90941764 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 19
90941698 AAAAATATAA
90941708 ATTTTGGAATTTTTAGAAAT
1 ATTTT-GAATTTTTAGAAAT
* *
90941728 ATTTTTAA-TTTTAAAAATT
1 ATTTTGAATTTTTAGAAA-T
90941747 ATTTTGAATTTTT-GAAAT
1 ATTTTGAATTTTTAGAAAT
90941765 CAAATTGATT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
18 9 0.29
19 13 0.42
20 9 0.29
ACGTcount: A:0.37, C:0.00, G:0.09, T:0.54
Consensus pattern (19 bp):
ATTTTGAATTTTTAGAAAT
Found at i:90942617 original size:29 final size:29
Alignment explanation
Indices: 90942585--90942642 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
90942575 GAATTGGATC
*
90942585 AAATCAAAACTTCTTGTA-AAAATTGCACA
1 AAATCAAAA-TTCATGTATAAAATTGCACA
*
90942614 AAATCAAAATTCATGTATACAATTGCACA
1 AAATCAAAATTCATGTATAAAATTGCACA
90942643 TTAAACAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 7 0.27
29 19 0.73
ACGTcount: A:0.48, C:0.17, G:0.07, T:0.28
Consensus pattern (29 bp):
AAATCAAAATTCATGTATAAAATTGCACA
Found at i:90943182 original size:6 final size:6
Alignment explanation
Indices: 90943163--90943192 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
90943153 TCAAACCAAT
90943163 AATATA AA-ATA AATATA AATATA AATATA A
1 AATATA AATATA AATATA AATATA AATATA A
90943193 TTATTGTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (6 bp):
AATATA
Found at i:90943641 original size:13 final size:14
Alignment explanation
Indices: 90943614--90943655 Score: 54
Period size: 13 Copynumber: 3.2 Consensus size: 14
90943604 TGAAACTGTG
90943614 AAAA-AATAA-AAT
1 AAAATAATAATAAT
90943626 AAAATAA-AATAAT
1 AAAATAATAATAAT
*
90943639 AAAATAATTATAAT
1 AAAATAATAATAAT
90943653 AAA
1 AAA
90943656 GAACACACAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
12 6 0.23
13 12 0.46
14 8 0.31
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (14 bp):
AAAATAATAATAAT
Found at i:90946902 original size:46 final size:46
Alignment explanation
Indices: 90946835--90947003 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 46
90946825 GTAACCCGTC
*
90946835 CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATT
1 CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCATT
* * *
90946881 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCT
1 CATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C-ATTTGCAT-T
* * * *
90946932 C-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATC
1 CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCATT
*
90946974 CATAAGTGAACTCGGACTCAACTCAACGAG
1 CATAAGCGAACTCGGACTCAACTCAACGAG
90947004 TTCGAATGCC
Statistics
Matches: 102, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 1 0.01
43 6 0.06
44 1 0.01
46 57 0.56
47 27 0.26
48 1 0.01
49 1 0.01
50 6 0.06
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCATT
Found at i:90946948 original size:93 final size:93
Alignment explanation
Indices: 90946841--90947013 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
90946831 CGTCCATAAG
* * * *
90946841 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATTCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
90946906 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGAATGCCTAGTTACATCTCT
*
90946934 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
90946999 ACGAGTTCGAATGCC
66 ACGAGCTCGAATGCC
90947014 CAAATATCCT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGAATGCCTAGTTACATCTCT
Found at i:90947028 original size:46 final size:44
Alignment explanation
Indices: 90946885--90947028 Score: 107
Period size: 46 Copynumber: 3.1 Consensus size: 44
90946875 TGCATTCATA
* * *
90946885 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCCA---A-ATC-CT
* * *
90946934 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTC-GA-ATGCCCAAATCC-T
90946977 AAGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCC-AA-ATCCT
90947024 AGTGA
1 AGTGA
90947029 CATGTCACTT
Statistics
Matches: 76, Mismatches: 9, Indels: 23
0.70 0.08 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
44 4 0.05
45 2 0.03
46 31 0.41
47 26 0.34
48 5 0.07
49 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCCAAATCCT
Found at i:90950915 original size:5 final size:5
Alignment explanation
Indices: 90950905--90950933 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
90950895 AAATTTGTGA
90950905 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
90950934 ATAATAAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:90951954 original size:310 final size:309
Alignment explanation
Indices: 90951372--90951992 Score: 1028
Period size: 310 Copynumber: 2.0 Consensus size: 309
90951362 AGGATTAAAA
* *
90951372 TTTTAAAATTTTAAAAATAAAAAAAATTAAAATTAAACAGGTATACAACTTACACAAAATATAGG
1 TTTTAAAATTCTAAAAATAAAAAAAAATAAAATTAAACAGGTATACAACTTACACAAAATATAGG
*
90951437 TTCTAATAGCATAAATTAACACAAAATTTATATGAATGTTACCCAGTGATTTGTATGAATTAAGA
66 GTCTAATAGCATAAATTAACACAAAATTTATATGAATGTTACCCAGTGATTTGTATGAATTAAGA
90951502 AAAGCCCTCCTAGGTTGTCTTCAACTATATATTTCTTAAATTTAAGTTGTCCTTTTCTTATAAAA
131 AAAGCCCTCCTAGGTTGTCTTCAACTATATATTTCTTAAATTTAAGTTGTCCTTTTCTTATAAAA
* * *
90951567 AAAGATAAACATGTCGTGGGGATAAGATATGACTTGGTGAAAATGAAAGACCAACAAAAGTCTGT
196 AAAGATAAACATGACGTAGGGATAAGATATGACTTGGCGAAAATGAAAGACCAACAAAAGTCTGT
90951632 TTCAACAAATACACAAGAAATTTATTGTTTCATCACTGTTCCAAAACAC
261 TTCAACAAATACACAAGAAATTTATTGTTTCATCACTGTTCCAAAACAC
* * * * * * *
90951681 TTTTCAAATTCTAAAAGTTAAAAAAAAATGAAGTTAAACAGGTCTACAATTTATACAAAATATAG
1 TTTTAAAATTCTAAAA-ATAAAAAAAAATAAAATTAAACAGGTATACAACTTACACAAAATATAG
*
90951746 GGTCTAATAGCATAAATTAACACAAAATTTATATGAATGTTACTCA-TGAATTTGTATGAATTAA
65 GGTCTAATAGCATAAATTAACACAAAATTTATATGAATGTTACCCAGTG-ATTTGTATGAATTAA
* *
90951810 GAAAAGCCCTCCTAGGTTGTCTTCAACTATATATTTCTTAAATTTATGTTGTCCTTTTCTTATCA
129 GAAAAGCCCTCCTAGGTTGTCTTCAACTATATATTTCTTAAATTTAAGTTGTCCTTTTCTTATAA
* * *
90951875 AAAAAGATAAACATGACGTAGTGATACGATATGACTTGGCGAAAATGAAAGACCGACAAAAGTCT
194 AAAAAGATAAACATGACGTAGGGATAAGATATGACTTGGCGAAAATGAAAGACCAACAAAAGTCT
* *
90951940 GTTTCAATAAATACACAAGAAATTTATTGTTTCATCATTGTTCCAAAACAC
259 GTTTCAACAAATACACAAGAAATTTATTGTTTCATCACTGTTCCAAAACAC
90951991 TT
1 TT
90951993 CTCTTCAAAA
Statistics
Matches: 289, Mismatches: 21, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
309 16 0.06
310 273 0.94
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (309 bp):
TTTTAAAATTCTAAAAATAAAAAAAAATAAAATTAAACAGGTATACAACTTACACAAAATATAGG
GTCTAATAGCATAAATTAACACAAAATTTATATGAATGTTACCCAGTGATTTGTATGAATTAAGA
AAAGCCCTCCTAGGTTGTCTTCAACTATATATTTCTTAAATTTAAGTTGTCCTTTTCTTATAAAA
AAAGATAAACATGACGTAGGGATAAGATATGACTTGGCGAAAATGAAAGACCAACAAAAGTCTGT
TTCAACAAATACACAAGAAATTTATTGTTTCATCACTGTTCCAAAACAC
Found at i:90955331 original size:4 final size:4
Alignment explanation
Indices: 90955318--90955358 Score: 57
Period size: 4 Copynumber: 10.0 Consensus size: 4
90955308 GGTTCTTTTG
90955318 ATTT -TTT ATTT ATTT ATTT ATTT ATTT ATTTT ATTTT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT A-TTT A-TTT ATTT
90955359 TTTTTCTCTT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
3 3 0.09
4 23 0.66
5 9 0.26
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
ATTT
Found at i:90956468 original size:19 final size:19
Alignment explanation
Indices: 90956434--90956481 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 19
90956424 ACTAGGTAAC
90956434 TTTATATTGGTTTTGT-TGTA
1 TTTATATT--TTTTGTATGTA
*
90956454 TTGTATATTTTTTGTATTTA
1 TT-TATATTTTTTGTATGTA
90956474 TTTATATT
1 TTTATATT
90956482 ATTATTACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 12 0.48
20 7 0.28
21 6 0.24
ACGTcount: A:0.19, C:0.00, G:0.12, T:0.69
Consensus pattern (19 bp):
TTTATATTTTTTGTATGTA
Found at i:90956531 original size:24 final size:23
Alignment explanation
Indices: 90956495--90956544 Score: 55
Period size: 24 Copynumber: 2.1 Consensus size: 23
90956485 ATTACCATTA
* *
90956495 TTATTTCATATATTTTATATTATT
1 TTATTTCACATATGTTAT-TTATT
* *
90956519 TTATTTTACATATGTTATTTCTT
1 TTATTTCACATATGTTATTTATT
90956542 TTA
1 TTA
90956545 AACTATTATA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
23 7 0.32
24 15 0.68
ACGTcount: A:0.26, C:0.06, G:0.02, T:0.66
Consensus pattern (23 bp):
TTATTTCACATATGTTATTTATT
Found at i:90956607 original size:27 final size:26
Alignment explanation
Indices: 90956540--90956607 Score: 66
Period size: 27 Copynumber: 2.5 Consensus size: 26
90956530 ATGTTATTTC
* *
90956540 TTTTAAACTATTATACATATTGTTTA
1 TTTTAAATTATTATACACATTGTTTA
* *
90956566 TTTTGAAACTT-TTATATACATTTTTGTA
1 TTTT-AAA-TTATTATACACATTGTT-TA
90956594 TTTTAAATTATTAT
1 TTTTAAATTATTAT
90956608 GTATATTATT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
26 6 0.18
27 21 0.62
28 7 0.21
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.57
Consensus pattern (26 bp):
TTTTAAATTATTATACACATTGTTTA
Found at i:90956650 original size:54 final size:54
Alignment explanation
Indices: 90956528--90956652 Score: 130
Period size: 54 Copynumber: 2.3 Consensus size: 54
90956518 TTTATTTTAC
* * *
90956528 ATATGTTATTTCTTTTAAACTATTATACATATTGTTTATTTTGAAACTTTTATAT
1 ATAT-TTATTTATTTTAAACTATTATACATATTATTTACTTTGAAACTTTTATAT
* * **
90956583 ACATTT-TTGTATTTTAAATTATTATGTATATTATTTACTTT-AATA-TTTTATAT
1 ATATTTATT-TATTTTAAACTATTATACATATTATTTACTTTGAA-ACTTTTATAT
90956636 ATATATTATTTATTTTA
1 ATAT-TTATTTATTTTA
90956653 GACCTTTTTA
Statistics
Matches: 58, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
53 15 0.26
54 38 0.66
55 5 0.09
ACGTcount: A:0.32, C:0.05, G:0.04, T:0.59
Consensus pattern (54 bp):
ATATTTATTTATTTTAAACTATTATACATATTATTTACTTTGAAACTTTTATAT
Found at i:90956652 original size:28 final size:27
Alignment explanation
Indices: 90956533--90956652 Score: 97
Period size: 26 Copynumber: 4.4 Consensus size: 27
90956523 TTTACATATG
* * *
90956533 TTATTTCTTTTAAACTAT-TATACATA
1 TTATTTATTTTAAATTTTATATACATA
*
90956559 TTGTTTATTTTGAAACTTTTATATACAT-
1 TTATTTATTTT-AAA-TTTTATATACATA
*
90956587 TT-TTGTATTTTAAATTATTATGT--ATA
1 TTATT-TATTTTAAATT-TTATATACATA
* *
90956613 TTATTTACTTTAATATTTTATATATATA
1 TTATTTATTTTAA-ATTTTATATACATA
90956641 TTATTTATTTTA
1 TTATTTATTTTA
90956653 GACCTTTTTA
Statistics
Matches: 76, Mismatches: 8, Indels: 18
0.75 0.08 0.18
Matches are distributed among these distances:
25 2 0.03
26 25 0.33
27 18 0.24
28 24 0.32
29 7 0.09
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.60
Consensus pattern (27 bp):
TTATTTATTTTAAATTTTATATACATA
Found at i:90956664 original size:28 final size:27
Alignment explanation
Indices: 90956575--90956669 Score: 77
Period size: 28 Copynumber: 3.5 Consensus size: 27
90956565 ATTTTGAAAC
* * *
90956575 TTTTATATACATTTTTGTATTTTAA-AT
1 TTTTATATATATTATT-TACTTTAACAT
* * *
90956602 TATTATGTATATTATTTACTTTAATAT
1 TTTTATATATATTATTTACTTTAACAT
* *
90956629 TTTATATATATATTATTTATTTTAGACCT
1 TTT-TATATATATTATTTACTTTA-ACAT
90956658 TTTTATAT-TATT
1 TTTTATATATATT
90956670 TTAAATTGTC
Statistics
Matches: 55, Mismatches: 10, Indels: 6
0.77 0.14 0.08
Matches are distributed among these distances:
26 7 0.13
27 20 0.36
28 23 0.42
29 5 0.09
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.62
Consensus pattern (27 bp):
TTTTATATATATTATTTACTTTAACAT
Found at i:90959083 original size:17 final size:18
Alignment explanation
Indices: 90959061--90959094 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
90959051 GAAGTCTGAG
90959061 AAAAAAAAATAG-ATACC
1 AAAAAAAAATAGTATACC
90959078 AAAAAAAAATAGTATAC
1 AAAAAAAAATAGTATAC
90959095 TTCAGAGCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.71, C:0.09, G:0.06, T:0.15
Consensus pattern (18 bp):
AAAAAAAAATAGTATACC
Found at i:90963951 original size:25 final size:25
Alignment explanation
Indices: 90963921--90963978 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
90963911 ACACTTGCAG
*
90963921 CAGAATACACGAGAAGTAGCAGCAA
1 CAGAATACACGAGAAGTAGCAACAA
*
90963946 CAGAATACACGAGAAGTAGCAATAA
1 CAGAATACACGAGAAGTAGCAACAA
90963971 CAGAATAC
1 CAGAATAC
90963979 GATGGAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.50, C:0.19, G:0.21, T:0.10
Consensus pattern (25 bp):
CAGAATACACGAGAAGTAGCAACAA
Found at i:90969390 original size:25 final size:25
Alignment explanation
Indices: 90969356--90969432 Score: 80
Period size: 25 Copynumber: 3.4 Consensus size: 25
90969346 TAGAGATCAT
90969356 TTTTTAACAGTAGAAATAGATGAAA
1 TTTTTAACAGTAGAAATAGATGAAA
*
90969381 TTTTTAACAG-AG--AT-CAT----
1 TTTTTAACAGTAGAAATAGATGAAA
90969398 TTTTTAACAGTAGAAATAGATGAAA
1 TTTTTAACAGTAGAAATAGATGAAA
*
90969423 TTTTCAACAG
1 TTTTTAACAG
90969433 AATGACTAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 16
0.68 0.05 0.27
Matches are distributed among these distances:
17 10 0.24
18 2 0.05
20 2 0.05
21 4 0.10
22 2 0.05
24 2 0.05
25 19 0.46
ACGTcount: A:0.43, C:0.08, G:0.14, T:0.35
Consensus pattern (25 bp):
TTTTTAACAGTAGAAATAGATGAAA
Found at i:90969406 original size:42 final size:42
Alignment explanation
Indices: 90969347--90969433 Score: 165
Period size: 42 Copynumber: 2.1 Consensus size: 42
90969337 TCTGACATAT
*
90969347 AGAGATCATTTTTTAACAGTAGAAATAGATGAAATTTTTAAC
1 AGAGATCATTTTTTAACAGTAGAAATAGATGAAATTTTCAAC
90969389 AGAGATCATTTTTTAACAGTAGAAATAGATGAAATTTTCAAC
1 AGAGATCATTTTTTAACAGTAGAAATAGATGAAATTTTCAAC
90969431 AGA
1 AGA
90969434 ATGACTAATT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.33
Consensus pattern (42 bp):
AGAGATCATTTTTTAACAGTAGAAATAGATGAAATTTTCAAC
Found at i:90974373 original size:18 final size:19
Alignment explanation
Indices: 90974332--90974373 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
90974322 AAAACCCCTT
90974332 TTTTTATAAATAATATATA
1 TTTTTATAAATAATATATA
*
90974351 TTTTTATCAATAAT-TATTA
1 TTTTTATAAATAATATA-TA
90974370 TTTT
1 TTTT
90974374 AAAAAATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 2 0.10
19 19 0.90
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTTTATAAATAATATATA
Found at i:90979267 original size:20 final size:20
Alignment explanation
Indices: 90979226--90979267 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
90979216 ATAATATTTT
*
90979226 ATTAATTTAATATTAATGTG
1 ATTAATTTAATACTAATGTG
*
90979246 ATTAATTCTAATCCTAAT-TG
1 ATTAATT-TAATACTAATGTG
90979266 AT
1 AT
90979268 CTCTCTCTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.48
Consensus pattern (20 bp):
ATTAATTTAATACTAATGTG
Found at i:90986873 original size:14 final size:15
Alignment explanation
Indices: 90986856--90986884 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
90986846 TTAAAAAGCA
90986856 TTTT-AAAAAATTAT
1 TTTTAAAAAAATTAT
90986870 TTTTAAAAAAATTAT
1 TTTTAAAAAAATTAT
90986885 AAACAGTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 4 0.29
15 10 0.71
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
TTTTAAAAAAATTAT
Found at i:90988896 original size:90 final size:90
Alignment explanation
Indices: 90988743--90988920 Score: 259
Period size: 90 Copynumber: 2.0 Consensus size: 90
90988733 GGGAGATCAT
* * * *
90988743 GTACTAGAAGTTAGATTGCATTTCACCTTCTTTACTAAAAAATTGAGCAAATTAGTCGATGTACG
1 GTACTAGAAGTCAGATTGCATTTCACCTTCTCTACTAAAAAATCGAGCAAATTAGTCAATGTACG
*
90988808 TTAAATCAAAGGGCAAATTGATCTG
66 TTAAATCAAAGAGCAAATTGATCTG
*
90988833 GTACTAGAAGTCAGATTGCATTTTGA-CTTCTCTACTAAAAAATCGAGCAAATTAGTCAATGTAC
1 GTACTAGAAGTCAGATTGCA-TTTCACCTTCTCTACTAAAAAATCGAGCAAATTAGTCAATGTAC
* * *
90988897 GTTAGATTAAAGAGCAACTTGATC
65 GTTAAATCAAAGAGCAAATTGATC
90988921 CTTTTAGTTA
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
90 74 0.95
91 4 0.05
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.31
Consensus pattern (90 bp):
GTACTAGAAGTCAGATTGCATTTCACCTTCTCTACTAAAAAATCGAGCAAATTAGTCAATGTACG
TTAAATCAAAGAGCAAATTGATCTG
Found at i:90990907 original size:27 final size:27
Alignment explanation
Indices: 90990869--90990925 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
90990859 ATGTTTAAAG
90990869 ACTCATGCATTTCATATCAAATGTAAC
1 ACTCATGCATTTCATATCAAATGTAAC
90990896 ACTCATGCATTTCATATCAAATGTAAC
1 ACTCATGCATTTCATATCAAATGTAAC
90990923 ACT
1 ACT
90990926 TTGTTATACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.33
Consensus pattern (27 bp):
ACTCATGCATTTCATATCAAATGTAAC
Found at i:91002861 original size:12 final size:12
Alignment explanation
Indices: 91002840--91002873 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
91002830 CCAAGCTCGT
*
91002840 AAATATTTTATTA
1 AAATA-TTTAATA
91002853 AAATATTTAATA
1 AAATATTTAATA
91002865 AAATATTTA
1 AAATATTTA
91002874 CGGATTTCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 15 0.75
13 5 0.25
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
AAATATTTAATA
Found at i:91010192 original size:47 final size:47
Alignment explanation
Indices: 91010138--91010494 Score: 590
Period size: 47 Copynumber: 7.6 Consensus size: 47
91010128 TATTTGAATA
91010138 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
91010185 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
91010232 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
91010281 AATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
91010327 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
91010374 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
91010421 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
91010468 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
91010495 TCCCGAAGGG
Statistics
Matches: 295, Mismatches: 12, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
46 46 0.16
47 204 0.69
49 45 0.15
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:91011951 original size:40 final size:40
Alignment explanation
Indices: 91011907--91012319 Score: 643
Period size: 40 Copynumber: 10.4 Consensus size: 40
91011897 GAGAATTGAG
91011907 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
91011947 AGTGATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
91011986 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
91012026 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
91012066 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
91012106 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
91012146 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
91012186 AGTGATGTATCCGGACTAAGTTCCGAA-AGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
91012225 AGTGATATATCCGTGCTAA-ACCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * * *
91012264 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
91012304 GGTGACGTATTCGGGC
1 AGTGATGTATCCGGGC
91012320 CTTCGTGCCT
Statistics
Matches: 348, Mismatches: 22, Indels: 6
0.93 0.06 0.02
Matches are distributed among these distances:
38 5 0.01
39 94 0.27
40 249 0.72
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:91016491 original size:47 final size:47
Alignment explanation
Indices: 91016311--91016713 Score: 657
Period size: 47 Copynumber: 8.6 Consensus size: 47
91016301 TATTTGAATA
91016311 AATGTGAAAGTGTATATATGTGATAA-GCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
91016357 AATGTGAAAGTGTATATATGTGATAAGG-CGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
91016403 AATGTGATAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
91016452 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
91016499 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
91016546 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
91016593 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
91016640 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
91016687 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
91016714 TCCCGAAGGG
Statistics
Matches: 337, Mismatches: 16, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
46 53 0.16
47 241 0.72
48 16 0.05
49 27 0.08
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:91019001 original size:105 final size:106
Alignment explanation
Indices: 91018812--91019029 Score: 420
Period size: 105 Copynumber: 2.1 Consensus size: 106
91018802 TGATTTCTTA
91018812 TAAGCTTACTACGATTAGTAGGTGTGAAATTCGAATGTATATATATATTATATTTTGAAAGTGAT
1 TAAGCTTACTACGATTAGTAGGTGTGAAATTCGAATG-ATATATATATTATATTTTGAAAGTGAT
91018877 GCTTGAATAGTTGAATAATGACTATTTTAAAATCTTTGAATT
65 GCTTGAATAGTTGAATAATGACTATTTTAAAATCTTTGAATT
91018919 TAAGCTTACTACGATTAGTAGGTGTGAAATTCGAATG-TATATATATTATATTTTGAAAGTGATG
1 TAAGCTTACTACGATTAGTAGGTGTGAAATTCGAATGATATATATATTATATTTTGAAAGTGATG
91018983 CTTGAATAGTTGAATAATGACTATTTTAAAATCTTTGAATT
66 CTTGAATAGTTGAATAATGACTATTTTAAAATCTTTGAATT
91019024 TAAGCT
1 TAAGCT
91019030 CGAGCATAGA
Statistics
Matches: 111, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
105 74 0.67
107 37 0.33
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.41
Consensus pattern (106 bp):
TAAGCTTACTACGATTAGTAGGTGTGAAATTCGAATGATATATATATTATATTTTGAAAGTGATG
CTTGAATAGTTGAATAATGACTATTTTAAAATCTTTGAATT
Found at i:91019834 original size:38 final size:39
Alignment explanation
Indices: 91019720--91019860 Score: 144
Period size: 38 Copynumber: 3.6 Consensus size: 39
91019710 ATTTGATGTG
* * *
91019720 TATCTGGGCTTAAAGACCCGCAGG-CTATATACTGGAATTA
1 TATCTGGG-TTAAAGTCCCGCAGGCCTA-GTACTGGTATTA
* * * *
91019760 TATCCGGGTTAAA-TCCCGCAGGCTTCGTACTAGTATTA
1 TATCTGGGTTAAAGTCCCGCAGGCCTAGTACTGGTATTA
*
91019798 TATCTGGGTTAAA-TCCCGCAGGCCTAGTGCTGGTATTA
1 TATCTGGGTTAAAGTCCCGCAGGCCTAGTACTGGTATTA
* *
91019836 TATCTGAGTTTAAAGTCCCGTAGGC
1 TATCTG-GGTTAAAGTCCCGCAGGC
91019861 TTCATGCTGG
Statistics
Matches: 84, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
38 56 0.67
39 12 0.14
40 16 0.19
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.30
Consensus pattern (39 bp):
TATCTGGGTTAAAGTCCCGCAGGCCTAGTACTGGTATTA
Found at i:91021275 original size:47 final size:46
Alignment explanation
Indices: 91021165--91021290 Score: 128
Period size: 47 Copynumber: 2.7 Consensus size: 46
91021155 GCCCTTGAAC
* * * *
91021165 AATTATTGTGAAAGTCAATTTGTTTG-GGTTAATAGTATCCTTAAGGG
1 AATT-TTGTGAAAGCCAATTTGTTTGACG-TGATAGTATCCTTAAAGG
* * *
91021212 AGTTTTATGGAAGCCAATTTGTTTGACGTGATAGTATCCCTTAAAGG
1 AATTTTGTGAAAGCCAATTTGTTTGACGTGATAGTAT-CCTTAAAGG
* * *
91021259 AATTTTGTGAAAGCCAAGTTGTATAACGTGAT
1 AATTTTGTGAAAGCCAATTTGTTTGACGTGAT
91021291 TGCATGTCTT
Statistics
Matches: 64, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
46 26 0.41
47 38 0.59
ACGTcount: A:0.30, C:0.10, G:0.23, T:0.37
Consensus pattern (46 bp):
AATTTTGTGAAAGCCAATTTGTTTGACGTGATAGTATCCTTAAAGG
Found at i:91021694 original size:58 final size:58
Alignment explanation
Indices: 91021601--91021716 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
91021591 TTTTTTGCCA
91021601 AAGAGAATAAGTTTACTACAAAAAAGGGAGATCTGTTCTCATGGAGGAGAATTTTATG
1 AAGAGAATAAGTTTACTACAAAAAAGGGAGATCTGTTCTCATGGAGGAGAATTTTATG
*
91021659 AAGAGAATAAGTTTACTACAAAAAAGGGAGTTCTGTTCTCATGGAGGAGAATTTTATG
1 AAGAGAATAAGTTTACTACAAAAAAGGGAGATCTGTTCTCATGGAGGAGAATTTTATG
91021717 CTAAGGAGTA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (58 bp):
AAGAGAATAAGTTTACTACAAAAAAGGGAGATCTGTTCTCATGGAGGAGAATTTTATG
Found at i:91021816 original size:37 final size:39
Alignment explanation
Indices: 91021741--91021817 Score: 104
Period size: 37 Copynumber: 2.0 Consensus size: 39
91021731 TTTTTTTTTT
* **
91021741 CCAATGAAGAGTTTATTGTTTAAGAGAAGAAGTTTGTTG
1 CCAAAGAAGAGTTTATTGTTTAAGAGAAGAAGCATGTTG
*
91021780 CCAAAGAAGA-TTTATT-TTTAAGAGAATAAGCATGTTG
1 CCAAAGAAGAGTTTATTGTTTAAGAGAAGAAGCATGTTG
91021817 C
1 C
91021818 TAAGTAGCAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
37 19 0.56
38 6 0.18
39 9 0.26
ACGTcount: A:0.36, C:0.08, G:0.22, T:0.34
Consensus pattern (39 bp):
CCAAAGAAGAGTTTATTGTTTAAGAGAAGAAGCATGTTG
Found at i:91026733 original size:14 final size:14
Alignment explanation
Indices: 91026714--91026742 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
91026704 AACATGTCCT
91026714 TTATATGAAAAATC
1 TTATATGAAAAATC
91026728 TTATATGAAAAATC
1 TTATATGAAAAATC
91026742 T
1 T
91026743 GTAACTTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.38
Consensus pattern (14 bp):
TTATATGAAAAATC
Found at i:91028849 original size:15 final size:16
Alignment explanation
Indices: 91028823--91028853 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
91028813 AAATGTAAGT
91028823 TTTAATAATATATAAA
1 TTTAATAATATATAAA
91028839 TTTAA-AATATATAAA
1 TTTAATAATATATAAA
91028854 AATATTACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
TTTAATAATATATAAA
Found at i:91047033 original size:19 final size:19
Alignment explanation
Indices: 91047009--91047066 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 19
91046999 TGGATTAAAA
91047009 AAAATTATATTTAAAATTT
1 AAAATTATATTTAAAATTT
* *
91047028 AAAATT-TAATTCAAAA-TA
1 AAAATTAT-ATTTAAAATTT
*
91047046 AAAATTAAATTATAAAATTT
1 AAAATTATATT-TAAAATTT
91047066 A
1 A
91047067 TTTGATTAGC
Statistics
Matches: 30, Mismatches: 5, Indels: 7
0.71 0.12 0.17
Matches are distributed among these distances:
18 11 0.37
19 17 0.57
20 2 0.07
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40
Consensus pattern (19 bp):
AAAATTATATTTAAAATTT
Found at i:91052961 original size:21 final size:19
Alignment explanation
Indices: 91052927--91052988 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 19
91052917 TAAGTTATGT
91052927 ATAATAATATAATATGAATAAA
1 ATAATAA-A-AATAT-AATAAA
91052949 AT-ATAAGGAAATATAATATAAA
1 ATAATAA--AAATAT-A-ATAAA
91052971 ATAATAAAAATATAATAA
1 ATAATAAAAATATAATAA
91052989 GTATTTTGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
19 4 0.11
20 1 0.03
21 16 0.46
22 10 0.29
23 4 0.11
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (19 bp):
ATAATAAAAATATAATAAA
Found at i:91053416 original size:20 final size:21
Alignment explanation
Indices: 91053382--91053421 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
91053372 ATTTGCCATT
*
91053382 TACAAATTTAGTAAATAATAA
1 TACAAATTTAGTAAAAAATAA
*
91053403 TACAATTTTA-TAAAAAATA
1 TACAAATTTAGTAAAAAATA
91053422 TATAAGAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (21 bp):
TACAAATTTAGTAAAAAATAA
Found at i:91053447 original size:14 final size:14
Alignment explanation
Indices: 91053428--91053489 Score: 52
Period size: 14 Copynumber: 4.2 Consensus size: 14
91053418 AATATATAAG
91053428 AAATATATAAAATA
1 AAATATATAAAATA
*
91053442 AAATATATAATATA
1 AAATATATAAAATA
* * *
91053456 ACATAATTTATAAGTA
1 AAAT-ATATA-AAATA
*
91053472 AAATATATGACAATA
1 AAATATAT-AAAATA
91053487 AAA
1 AAA
91053490 AATAATGGAT
Statistics
Matches: 36, Mismatches: 9, Indels: 5
0.72 0.18 0.10
Matches are distributed among these distances:
14 16 0.44
15 13 0.36
16 7 0.19
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (14 bp):
AAATATATAAAATA
Found at i:91069114 original size:7 final size:7
Alignment explanation
Indices: 91069080--91069112 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
91069070 ATATTACGTA
91069080 AAATTTG
1 AAATTTG
91069087 AAATTTG
1 AAATTTG
*
91069094 AAATATG
1 AAATTTG
91069101 AAATTT-
1 AAATTTG
91069107 AAATTT
1 AAATTT
91069113 TATTGTATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
6 6 0.25
7 18 0.75
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (7 bp):
AAATTTG
Found at i:91076104 original size:21 final size:20
Alignment explanation
Indices: 91076056--91076104 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 20
91076046 TGTCGTTTTT
91076056 ATTTAAAAAAAACAAATATA
1 ATTTAAAAAAAACAAATATA
91076076 ATTCTAAAAAAATA-AAATATA
1 ATT-TAAAAAAA-ACAAATATA
91076097 ATGTTAAA
1 AT-TTAAA
91076105 TTATAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 3 0.12
21 21 0.81
22 2 0.08
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (20 bp):
ATTTAAAAAAAACAAATATA
Found at i:91078890 original size:16 final size:16
Alignment explanation
Indices: 91078869--91078903 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
91078859 AAAATGATCA
91078869 TCTCTCTTATTTTCTT
1 TCTCTCTTATTTTCTT
91078885 TCTCTCTTATTTTCTT
1 TCTCTCTTATTTTCTT
91078901 TCT
1 TCT
91078904 TTTCACTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.06, C:0.26, G:0.00, T:0.69
Consensus pattern (16 bp):
TCTCTCTTATTTTCTT
Found at i:91084027 original size:43 final size:43
Alignment explanation
Indices: 91083978--91084074 Score: 158
Period size: 43 Copynumber: 2.3 Consensus size: 43
91083968 ATTGCAAAGA
91083978 ATTGTAATTCTCTAGACATGTTTAGACAATAGATTGCAATTAC
1 ATTGTAATTCTCTAGACATGTTTAGACAATAGATTGCAATTAC
* * *
91084021 ATTGTAATTCTCTAGACATGTTTGGATAATAGATTGTAATTAC
1 ATTGTAATTCTCTAGACATGTTTAGACAATAGATTGCAATTAC
*
91084064 ATCGTAATTCT
1 ATTGTAATTCT
91084075 TTATGTCATG
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.40
Consensus pattern (43 bp):
ATTGTAATTCTCTAGACATGTTTAGACAATAGATTGCAATTAC
Found at i:91085125 original size:12 final size:12
Alignment explanation
Indices: 91085110--91085136 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
91085100 TTATTTGTTT
91085110 TTTGTTTTAATA
1 TTTGTTTTAATA
91085122 TTTGTTTTAATA
1 TTTGTTTTAATA
91085134 TTT
1 TTT
91085137 TTAAATGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.70
Consensus pattern (12 bp):
TTTGTTTTAATA
Found at i:91085154 original size:24 final size:24
Alignment explanation
Indices: 91085120--91085181 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
91085110 TTTGTTTTAA
*
91085120 TATTTGTTTTAATAT-TTTTAAAT
1 TATTTGATTTAATATATTTTAAAT
*
91085143 GTATTTGATTTATTATATTTTAAAT
1 -TATTTGATTTAATATATTTTAAAT
* *
91085168 TTTTTTATTTAATA
1 TATTTGATTTAATA
91085182 AAAAAATTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 24 0.75
25 8 0.25
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.65
Consensus pattern (24 bp):
TATTTGATTTAATATATTTTAAAT
Found at i:91086198 original size:18 final size:17
Alignment explanation
Indices: 91086163--91086198 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
91086153 TTTAGAGGAA
*
91086163 AAAAATATAGGTTGGTT
1 AAAAATATAGATTGGTT
91086180 AAAAATATAGATTGAGTT
1 AAAAATATAGATTG-GTT
91086198 A
1 A
91086199 GCTAAAACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.33
Consensus pattern (17 bp):
AAAAATATAGATTGGTT
Found at i:91086527 original size:24 final size:24
Alignment explanation
Indices: 91086495--91086541 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
91086485 AAAAATTAAA
* *
91086495 TACATAATATTTTAA-TATAAATAT
1 TACAAAATATATTAAGT-TAAATAT
91086519 TACAAAATATATTAAGTTAAATA
1 TACAAAATATATTAAGTTAAATA
91086542 AGTAAATTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 19 0.95
25 1 0.05
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.40
Consensus pattern (24 bp):
TACAAAATATATTAAGTTAAATAT
Found at i:91090322 original size:17 final size:18
Alignment explanation
Indices: 91090300--91090334 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
91090290 GATATGATAC
*
91090300 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
91090317 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
91090335 CTGGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:91090623 original size:22 final size:21
Alignment explanation
Indices: 91090588--91090663 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
91090578 AAAAGGTATC
* *
91090588 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
91090609 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
91090632 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
91090651 TGC-AATCATATCT
1 TACAAATCATATCT
91090664 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:91090680 original size:35 final size:37
Alignment explanation
Indices: 91090617--91090714 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
91090607 ATTACAAAAT
91090617 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
91090653 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
91090688 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
91090715 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:91090722 original size:17 final size:19
Alignment explanation
Indices: 91090624--91090714 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
91090614 AATCATATCT
91090624 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
91090643 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
91090661 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
91090678 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
91090697 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
91090715 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:91092004 original size:47 final size:47
Alignment explanation
Indices: 91091895--91092005 Score: 136
Period size: 47 Copynumber: 2.4 Consensus size: 47
91091885 CCGAGATAAG
* * *
91091895 CACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
* * *
91091942 CACAAAGTACTTCATCGGAACAAATCCGAAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTA-TAGTA
91091989 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
91092006 ACTCAATGTC
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
46 1 0.02
47 51 0.94
48 2 0.04
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
Found at i:91093329 original size:21 final size:20
Alignment explanation
Indices: 91093292--91093330 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
91093282 AACTTGGACC
**
91093292 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGACTTATTAT
91093312 TTTTGTTTTTGGACTTATT
1 TTTT-TTTTTGGACTTATT
91093331 TCTGGGCCTG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTGGACTTATTAT
Found at i:91093587 original size:45 final size:45
Alignment explanation
Indices: 91093523--91093796 Score: 259
Period size: 45 Copynumber: 6.1 Consensus size: 45
91093513 GAAAGGCGAT
* * * **
91093523 ATCTGCTATCTTTGATCTGCCCCCCACCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * *
91093568 ATCTGTTATCTTTGATCTGCTCCCCGTTTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* *
91093613 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* *
91093657 ATCTGTTATCTCCGATTTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * * * * * * *
91093702 ATCTGTCATCTTGGATTTGCT--TCGATGTAA-ACATATGAAGGTCAG
1 ATCTGTTATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAA
* * *
91093747 ATCTGCTATGTTTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAA
1 ATCTG-T-TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
91093794 ATC
1 ATC
91093797 ATCTTGGACC
Statistics
Matches: 184, Mismatches: 36, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
43 6 0.03
44 44 0.24
45 106 0.58
46 1 0.01
47 17 0.09
48 5 0.03
49 5 0.03
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
Found at i:91093689 original size:89 final size:90
Alignment explanation
Indices: 91093523--91093706 Score: 271
Period size: 89 Copynumber: 2.1 Consensus size: 90
91093513 GAAAGGCGAT
** **
91093523 ATCTGCTATCTTTGATCTGCCCCCCACCTAATACAGAGATGCCAAATCTGTTATCTTTGATCTGC
1 ATCTGCTATCTTCAATCTGCCCCCCACCTAATACAGAGATGCCAAATCTGTTATCTCCGATCTGC
*
91093588 TCCCCGTTTAATACAGAGACGCCAA
66 TCCCCGTCTAATACAGAGACGCCAA
* ** *
91093613 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCGATTTGC
1 ATCTGCTATCTTCAATCTGCCCCCCACCTAATACAGAGATGCCAAATCTGTTATCTCCGATCTGC
*
91093677 TCCCCGTCTAATACAGAGATGCCAA
66 TCCCCGTCTAATACAGAGACGCCAA
91093702 ATCTG
1 ATCTG
91093707 TCATCTTGGA
Statistics
Matches: 84, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
89 77 0.92
90 7 0.08
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.30
Consensus pattern (90 bp):
ATCTGCTATCTTCAATCTGCCCCCCACCTAATACAGAGATGCCAAATCTGTTATCTCCGATCTGC
TCCCCGTCTAATACAGAGACGCCAA
Found at i:91093986 original size:77 final size:78
Alignment explanation
Indices: 91093736--91094008 Score: 424
Period size: 78 Copynumber: 3.5 Consensus size: 78
91093726 ATGTAAACAT
* *
91093736 ATGAAGGTCAGATCTGCTATGTTTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
* *
91093801 TGGACCTGTTTCA
66 TGGATCTGCTTCA
*
91093814 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
91093878 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * * *
91093892 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCTGTCTAATACAGAGATTCC-AATTATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
91093956 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* *
91093969 ATAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGT
91094009 TGAATATGGA
Statistics
Matches: 179, Mismatches: 14, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
77 58 0.32
78 119 0.66
79 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:91093999 original size:37 final size:37
Alignment explanation
Indices: 91093876--91094002 Score: 91
Period size: 37 Copynumber: 3.4 Consensus size: 37
91093866 TGCCAAATCA
* *
91093876 TCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATG
1 TCTTCGATCTGCTTCAATAAAGGTCAGATCTGCTATG
* * * * *
91093913 TCTTCGATCTACTCCCTGTCTAATACA-G--AGAT-TCCAATTA
1 TCTTCGA--T-CT-GCT-TC-AATAAAGGTCAGATCTGCTA-TG
*
91093953 TCTTGGATCTGCTTCAATAAAGGTCAGATCTGCTATG
1 TCTTCGATCTGCTTCAATAAAGGTCAGATCTGCTATG
91093990 TCTTCGATCTGCT
1 TCTTCGATCTGCT
91094003 CTCCGTTGAA
Statistics
Matches: 65, Mismatches: 14, Indels: 22
0.64 0.14 0.22
Matches are distributed among these distances:
34 5 0.08
35 3 0.05
36 2 0.03
37 25 0.38
38 4 0.06
39 4 0.06
40 13 0.20
41 2 0.03
42 3 0.05
43 4 0.06
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (37 bp):
TCTTCGATCTGCTTCAATAAAGGTCAGATCTGCTATG
Found at i:91102261 original size:17 final size:17
Alignment explanation
Indices: 91102239--91102271 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
91102229 GATATGATAC
91102239 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
91102256 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
91102272 AATCTGGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:91102272 original size:18 final size:17
Alignment explanation
Indices: 91102239--91102272 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
91102229 GATATGATAC
*
91102239 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
91102256 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
91102273 ATCTGGGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:91102563 original size:22 final size:21
Alignment explanation
Indices: 91102528--91102603 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
91102518 AAAAGGTATC
* *
91102528 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
91102549 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
91102572 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
91102591 TGC-AATCATATCT
1 TACAAATCATATCT
91102604 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:91102620 original size:35 final size:37
Alignment explanation
Indices: 91102557--91102654 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
91102547 ATTACAAAAT
91102557 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
91102593 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
91102628 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
91102655 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:91102662 original size:17 final size:19
Alignment explanation
Indices: 91102564--91102654 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
91102554 AATCATATCT
91102564 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
91102583 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
91102601 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
91102618 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
91102637 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
91102655 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:91106141 original size:32 final size:33
Alignment explanation
Indices: 91106042--91106155 Score: 117
Period size: 33 Copynumber: 3.5 Consensus size: 33
91106032 GGTGTACATT
**
91106042 CCTTTCCAAGTGGTACACACAAAGTATATC-TTT
1 CCTTTCCAAGTGGTACACACAAAGTATA-CATAA
* * *
91106075 CCTTTTCATA-TGGTATACACAAAGTATACCTAA
1 CCTTTCCA-AGTGGTACACACAAAGTATACATAA
*
91106108 CCTTTCCAAGT-GTACACACAAAGTGTACATAA
1 CCTTTCCAAGTGGTACACACAAAGTATACATAA
* *
91106140 CCTTTTCAAGTTGTAC
1 CCTTTCCAAGTGGTAC
91106156 CATTTGGGTA
Statistics
Matches: 68, Mismatches: 9, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
32 30 0.44
33 37 0.54
34 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.32
Consensus pattern (33 bp):
CCTTTCCAAGTGGTACACACAAAGTATACATAA
Found at i:91108590 original size:13 final size:13
Alignment explanation
Indices: 91108572--91108607 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
91108562 GATAATTAGC
91108572 AAATCATACATAT
1 AAATCATACATAT
*
91108585 AAATCATATATAT
1 AAATCATACATAT
91108598 AAATTCATAC
1 AAA-TCATAC
91108608 CAACTATCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 15 0.75
14 5 0.25
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (13 bp):
AAATCATACATAT
Found at i:91122166 original size:19 final size:22
Alignment explanation
Indices: 91122144--91122192 Score: 68
Period size: 19 Copynumber: 2.4 Consensus size: 22
91122134 TTAAACTTTC
91122144 AATTTTTAAT-TATTTTAT-G-
1 AATTTTTAATCTATTTTATCGA
*
91122163 AATTTTTAATCTCTTTTATCGA
1 AATTTTTAATCTATTTTATCGA
91122185 AATTTTTA
1 AATTTTTA
91122193 TTTTTTTGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 10 0.38
20 7 0.27
21 1 0.04
22 8 0.31
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.59
Consensus pattern (22 bp):
AATTTTTAATCTATTTTATCGA
Found at i:91124169 original size:19 final size:20
Alignment explanation
Indices: 91124145--91124182 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
91124135 ATGTTCATCT
91124145 ATATTTTTT-TTTAAAATTA
1 ATATTTTTTGTTTAAAATTA
*
91124164 ATATTTTTTGTTTATAATT
1 ATATTTTTTGTTTAAAATT
91124183 TAGTAAGTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66
Consensus pattern (20 bp):
ATATTTTTTGTTTAAAATTA
Found at i:91127931 original size:20 final size:20
Alignment explanation
Indices: 91127908--91127952 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
91127898 AAATGAATCC
* *
91127908 TAAATTCAGAAAAAATAACA
1 TAAATCCAGAAAAAATAAAA
* *
91127928 TAAACCCAGAAAAATTAAAA
1 TAAATCCAGAAAAAATAAAA
91127948 TAAAT
1 TAAAT
91127953 AATAATAATA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.64, C:0.11, G:0.04, T:0.20
Consensus pattern (20 bp):
TAAATCCAGAAAAAATAAAA
Found at i:91131979 original size:21 final size:21
Alignment explanation
Indices: 91131954--91131994 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
91131944 CAACAAATAA
*
91131954 TTTAAAAATTAAAAATATATT
1 TTTAAAAAATAAAAATATATT
91131975 TTTAAAAAATAAAAATATAT
1 TTTAAAAAATAAAAATATAT
91131995 ATATAGCATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
TTTAAAAAATAAAAATATATT
Found at i:91132103 original size:23 final size:24
Alignment explanation
Indices: 91132059--91132114 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 24
91132049 TCAACTCTTT
*
91132059 TTAAAAAATTATAAATAAAATTTAA
1 TTAAAAAA-TAAAAATAAAATTTAA
* *
91132084 TTAAAAAATAAAAAT-TAATTTGA
1 TTAAAAAATAAAAATAAAATTTAA
91132107 -TAAAAAAT
1 TTAAAAAAT
91132115 GTAAATATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 8 0.29
23 6 0.21
24 6 0.21
25 8 0.29
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (24 bp):
TTAAAAAATAAAAATAAAATTTAA
Found at i:91132708 original size:20 final size:21
Alignment explanation
Indices: 91132673--91132715 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
91132663 CATTAAACTC
91132673 TTTAAACTAGATTTTTAATTT
1 TTTAAACTAGATTTTTAATTT
*
91132694 TTTAAA-TATATTTTTAATTT
1 TTTAAACTAGATTTTTAATTT
91132714 TT
1 TT
91132716 ATGAATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (21 bp):
TTTAAACTAGATTTTTAATTT
Found at i:91138647 original size:30 final size:29
Alignment explanation
Indices: 91138613--91138673 Score: 113
Period size: 30 Copynumber: 2.1 Consensus size: 29
91138603 ATGAATCTAA
91138613 AGTTTTGGCACTAAGTGTGCGATTTAAACT
1 AGTTTTGGCACTAAGTGTGCGATTT-AACT
91138643 AGTTTTGGCACTAAGTGTGCGATTTAACT
1 AGTTTTGGCACTAAGTGTGCGATTTAACT
91138672 AG
1 AG
91138674 CTTCAGTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 6 0.19
30 25 0.81
ACGTcount: A:0.26, C:0.13, G:0.25, T:0.36
Consensus pattern (29 bp):
AGTTTTGGCACTAAGTGTGCGATTTAACT
Found at i:91144288 original size:13 final size:13
Alignment explanation
Indices: 91144270--91144294 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91144260 TAACAAGATA
91144270 TTAAAAAATAATT
1 TTAAAAAATAATT
91144283 TTAAAAAATAAT
1 TTAAAAAATAAT
91144295 CAAATATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
TTAAAAAATAATT
Found at i:91147276 original size:29 final size:28
Alignment explanation
Indices: 91147215--91147279 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 28
91147205 CGCTTTGTAT
*
91147215 ATTTAAAATTTAGTCTTTATTGTTTTAT
1 ATTTAAAATTTAGTCTTTATTGTTTTAA
*
91147243 TTTTAGAAATTTAGTCTATT-TAT-TTTTAA
1 ATTTA-AAATTTAGTCT-TTAT-TGTTTTAA
91147272 ATTTAAAA
1 ATTTAAAA
91147280 ATTCAGAGGC
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
28 7 0.23
29 21 0.68
30 3 0.10
ACGTcount: A:0.34, C:0.03, G:0.06, T:0.57
Consensus pattern (28 bp):
ATTTAAAATTTAGTCTTTATTGTTTTAA
Found at i:91147876 original size:18 final size:18
Alignment explanation
Indices: 91147855--91147914 Score: 50
Period size: 18 Copynumber: 3.2 Consensus size: 18
91147845 TGAAATAGTT
91147855 AACAATATTAACTATTTA
1 AACAATATTAACTATTTA
* * *
91147873 AACATTTTTATTGAAATAGTT-
1 AACA---ATATT-AACTATTTA
91147894 AACAATATTAACTATTTA
1 AACAATATTAACTATTTA
91147912 AAC
1 AAC
91147915 TAATTATAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 10
0.66 0.13 0.21
Matches are distributed among these distances:
17 6 0.19
18 11 0.35
21 8 0.26
22 6 0.19
ACGTcount: A:0.47, C:0.10, G:0.03, T:0.40
Consensus pattern (18 bp):
AACAATATTAACTATTTA
Found at i:91147877 original size:39 final size:39
Alignment explanation
Indices: 91147834--91147914 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
91147824 ATTTGGTGTC
91147834 AACATTTTTATTGAAATAGTTAACAATATTAACTATTTA
1 AACATTTTTATTGAAATAGTTAACAATATTAACTATTTA
91147873 AACATTTTTATTGAAATAGTTAACAATATTAACTATTTA
1 AACATTTTTATTGAAATAGTTAACAATATTAACTATTTA
91147912 AAC
1 AAC
91147915 TAATTATAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.44, C:0.09, G:0.05, T:0.42
Consensus pattern (39 bp):
AACATTTTTATTGAAATAGTTAACAATATTAACTATTTA
Found at i:91147897 original size:21 final size:21
Alignment explanation
Indices: 91147834--91147897 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
91147824 ATTTGGTGTC
91147834 AACATTTTTATTGAAATAGTT
1 AACATTTTTATTGAAATAGTT
* * *
91147855 AACA---ATATT-AACTATTT
1 AACATTTTTATTGAAATAGTT
91147872 AAACATTTTTATTGAAATAGTT
1 -AACATTTTTATTGAAATAGTT
91147894 AACA
1 AACA
91147898 ATATTAACTA
Statistics
Matches: 32, Mismatches: 6, Indels: 10
0.67 0.12 0.21
Matches are distributed among these distances:
17 6 0.19
18 8 0.25
21 12 0.38
22 6 0.19
ACGTcount: A:0.44, C:0.08, G:0.06, T:0.42
Consensus pattern (21 bp):
AACATTTTTATTGAAATAGTT
Found at i:91150741 original size:30 final size:30
Alignment explanation
Indices: 91150671--91150755 Score: 107
Period size: 30 Copynumber: 2.8 Consensus size: 30
91150661 GGTAACCTCA
* * *
91150671 ATATAATGTTAGCTTGTGTGAGCAATATTG
1 ATATAATGTCAGCTTGTGTGAGCAACACTG
* *
91150701 TTATAATGTCAGCTTGTGTGAGCAACCCTG
1 ATATAATGTCAGCTTGTGTGAGCAACACTG
* *
91150731 ATATATTGTCAGCTTGTATGAGCAA
1 ATATAATGTCAGCTTGTGTGAGCAA
91150756 TTTATTCTCG
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 47 1.00
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.36
Consensus pattern (30 bp):
ATATAATGTCAGCTTGTGTGAGCAACACTG
Found at i:91150830 original size:18 final size:19
Alignment explanation
Indices: 91150809--91150847 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
91150799 GGAAATATTC
*
91150809 ATTTCATTG-GAAATGGAA
1 ATTTAATTGTGAAATGGAA
91150827 ATTTAATTGTGAAATGGAA
1 ATTTAATTGTGAAATGGAA
91150846 AT
1 AT
91150848 GAAATGGTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.36
Consensus pattern (19 bp):
ATTTAATTGTGAAATGGAA
Found at i:91162657 original size:21 final size:21
Alignment explanation
Indices: 91162631--91162678 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
91162621 ACACGGCTTG
91162631 GCCACACGGTTGTGCAACCCT
1 GCCACACGGTTGTGCAACCCT
*
91162652 GCCACACGGTTGTGCAACTCT
1 GCCACACGGTTGTGCAACCCT
*
91162673 TCCACA
1 GCCACA
91162679 TGAACTATAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.21, C:0.38, G:0.21, T:0.21
Consensus pattern (21 bp):
GCCACACGGTTGTGCAACCCT
Found at i:91164791 original size:18 final size:16
Alignment explanation
Indices: 91164770--91164803 Score: 50
Period size: 18 Copynumber: 2.0 Consensus size: 16
91164760 ATAGATAATC
91164770 ATATTATATTATATAAAT
1 ATATTAT-TTAT-TAAAT
91164788 ATATTATTTATTAAAT
1 ATATTATTTATTAAAT
91164804 TTTATATATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 4 0.25
18 7 0.44
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
ATATTATTTATTAAAT
Found at i:91168687 original size:48 final size:48
Alignment explanation
Indices: 91168605--91168698 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
91168595 TTTCTTGGCT
* *
91168605 TAAAAACGCCTAAGTCAGCCTAACTTCCACCAATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
91168653 TAAAAACGCCTAAGTCAG-CTCAAC-TCGCAACAATAAAGGATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATTCAAC
91168699 AGAATTCCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 4 0.10
48 38 0.90
ACGTcount: A:0.40, C:0.28, G:0.13, T:0.19
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:91171189 original size:48 final size:48
Alignment explanation
Indices: 91171116--91171209 Score: 145
Period size: 48 Copynumber: 2.0 Consensus size: 48
91171106 TTTCTTGGCT
* *
91171116 TAAAAACGCCTAAGTCAGCCTAACTTCCACCAATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
*
91171164 TAAAAACGCCTAAGTCAG-CTCAACTTGCAACAATAAAGGATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AACTTCCAACAATAAAGGATTCAAC
91171210 AGAATTCCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
47 2 0.05
48 40 0.95
ACGTcount: A:0.40, C:0.27, G:0.13, T:0.20
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:91172266 original size:12 final size:11
Alignment explanation
Indices: 91172247--91172274 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
91172237 TAAATTTCTC
91172247 TCTTTTTTTTT
1 TCTTTTTTTTT
91172258 TCTTTTTTTTT
1 TCTTTTTTTTT
91172269 TCTTTT
1 TCTTTT
91172275 GGGTTTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (11 bp):
TCTTTTTTTTT
Found at i:91174500 original size:18 final size:18
Alignment explanation
Indices: 91174461--91174501 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
91174451 GCCTGATGGT
* *
91174461 TCTTCTCCATCATCTTCC
1 TCTTCTCCATCATCATCA
91174479 TCTTCTCCATCATCATCA
1 TCTTCTCCATCATCATCA
91174497 TCTTC
1 TCTTC
91174502 CAAAGCTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.15, C:0.41, G:0.00, T:0.44
Consensus pattern (18 bp):
TCTTCTCCATCATCATCA
Found at i:91175013 original size:3 final size:3
Alignment explanation
Indices: 91175007--91175032 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
91174997 TCAAGACGGG
91175007 GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GA
91175033 GAAGAACAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.31
Consensus pattern (3 bp):
GAT
Found at i:91176187 original size:9 final size:10
Alignment explanation
Indices: 91176162--91176186 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
91176152 TTATAATTAT
91176162 AAAAAATAAA
1 AAAAAATAAA
91176172 AAAAAATAAA
1 AAAAAATAAA
91176182 AAAAA
1 AAAAA
91176187 TTCTTTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (10 bp):
AAAAAATAAA
Found at i:91177447 original size:15 final size:14
Alignment explanation
Indices: 91177423--91177470 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
91177413 AGCCCCCTCG
91177423 CCCCCCCCACCCCA
1 CCCCCCCCACCCCA
91177437 CCCCACCCCACCCCA
1 CCCC-CCCCACCCCA
* * *
91177452 CCCGCCCCGCCCCG
1 CCCCCCCCACCCCA
91177466 CCCCC
1 CCCCC
91177471 ACCATAACAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 16 0.55
15 13 0.45
ACGTcount: A:0.10, C:0.83, G:0.06, T:0.00
Consensus pattern (14 bp):
CCCCCCCCACCCCA
Found at i:91177469 original size:5 final size:5
Alignment explanation
Indices: 91177423--91177454 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
91177413 AGCCCCCTCG
91177423 CCCC- CCCCA CCCCA CCCCA CCCCA CCCCA CCC
1 CCCCA CCCCA CCCCA CCCCA CCCCA CCCCA CCC
91177455 GCCCCGCCCC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.16, C:0.84, G:0.00, T:0.00
Consensus pattern (5 bp):
CCCCA
Found at i:91180912 original size:28 final size:29
Alignment explanation
Indices: 91180881--91180940 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
91180871 GATTTTTGAC
* *
91180881 AAAAATGTTAATT-AGGGATTAAATTGTG
1 AAAAATGTAAATTAAGGGATTAAATTATG
*
91180909 AAAAGTGTAAATTAAGGGATTAAATTATG
1 AAAAATGTAAATTAAGGGATTAAATTATG
91180938 AAA
1 AAA
91180941 TAAATGTGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 11 0.39
29 17 0.61
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (29 bp):
AAAAATGTAAATTAAGGGATTAAATTATG
Found at i:91181473 original size:43 final size:44
Alignment explanation
Indices: 91181426--91181579 Score: 165
Period size: 43 Copynumber: 3.6 Consensus size: 44
91181416 TCGATATGTG
* *
91181426 ATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TATTGAT
1 ATTACATGTAAGACCATGTCTGGGACATTGACATCGATATTGAT
* * * *
91181469 ATTACGTGTAAGACCATGTTTGGGACATTGACATCGTTAATCGAT
1 ATTACATGTAAGACCATGTCTGGGACATTGACATCGAT-ATTGAT
* * *
91181514 -TT-CGTGTAAGACCTTGTCTGGGACAGTGACATCGATATGTGAT
1 ATTACATGTAAGACCATGTCTGGGACATTGACATCGATAT-TGAT
*
91181557 A--ACATGTAAGACCATATCTGGGA
1 ATTACATGTAAGACCATGTCTGGGA
91181580 TATGGCATTG
Statistics
Matches: 93, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
42 2 0.02
43 83 0.89
44 3 0.03
45 5 0.05
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.32
Consensus pattern (44 bp):
ATTACATGTAAGACCATGTCTGGGACATTGACATCGATATTGAT
Found at i:91183032 original size:13 final size:13
Alignment explanation
Indices: 91182987--91183026 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
91182977 TAAAGTAATT
91182987 AAATAAAA-AATA-
1 AAATAAAAGAA-AG
91182999 AAATAAAAGAAAG
1 AAATAAAAGAAAG
91183012 AAATAAAAGAAAG
1 AAATAAAAGAAAG
91183025 AA
1 AA
91183027 TGAAAATGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.35
13 17 0.65
ACGTcount: A:0.80, C:0.00, G:0.10, T:0.10
Consensus pattern (13 bp):
AAATAAAAGAAAG
Found at i:91187435 original size:20 final size:21
Alignment explanation
Indices: 91187395--91187436 Score: 75
Period size: 22 Copynumber: 2.0 Consensus size: 21
91187385 ACAAACATTA
91187395 AATTTTTATATATAAATATAT
1 AATTTTTATATATAAATATAT
91187416 AATTTTGTATATATAAATATA
1 AATTTT-TATATATAAATATA
91187437 GATAGCCATG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (21 bp):
AATTTTTATATATAAATATAT
Done.