Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 285 of 290
Found at i:91189710 original size:41 final size:40
Alignment explanation
Indices: 91189620--91189714 Score: 102
Period size: 40 Copynumber: 2.4 Consensus size: 40
91189610 CGTTTTCCCC
* * *
91189620 ATAAATGCCACTATTGCTTTATTTATTGCGGTGTTTTTCT
1 ATAAATGCCACTAATGCTATATATATTGCGGTGTTTTTCT
* * * *
91189660 ATTAGTGCCACTAATGGTATATAT-TTGCGGTGTTTTTTT
1 ATAAATGCCACTAATGCTATATATATTGCGGTGTTTTTCT
91189699 ATCCAAATGCCACTAA
1 AT--AAATGCCACTAA
91189715 AAACGCCGCT
Statistics
Matches: 44, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
39 16 0.36
40 18 0.41
41 10 0.23
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.44
Consensus pattern (40 bp):
ATAAATGCCACTAATGCTATATATATTGCGGTGTTTTTCT
Found at i:91190560 original size:15 final size:15
Alignment explanation
Indices: 91190540--91190579 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
91190530 CTAGATTACT
91190540 TCCTAGGGTTGTCAA
1 TCCTAGGGTTGTCAA
*
91190555 TCCTAGGGTCGTCAA
1 TCCTAGGGTTGTCAA
*
91190570 TTCTAGGGTT
1 TCCTAGGGTT
91190580 TAAGCATGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.17, C:0.20, G:0.28, T:0.35
Consensus pattern (15 bp):
TCCTAGGGTTGTCAA
Found at i:91191208 original size:10 final size:11
Alignment explanation
Indices: 91191184--91191208 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
91191174 ATTTGGGCGC
91191184 AAAATGAGTGA
1 AAAATGAGTGA
91191195 AAAATGAGTGA
1 AAAATGAGTGA
91191206 AAA
1 AAA
91191209 CCGAAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.00, G:0.24, T:0.16
Consensus pattern (11 bp):
AAAATGAGTGA
Found at i:91191311 original size:29 final size:30
Alignment explanation
Indices: 91191255--91191311 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
91191245 CTAAACCCTC
* * *
91191255 CTACATGGGCTGGGCACACGGCTGTGTGAG
1 CTACATGGGCTGGCCACACAGCCGTGTGAG
91191285 CTACATGGGCT-GCCACACAGCCGTGTG
1 CTACATGGGCTGGCCACACAGCCGTGTG
91191312 CTAGACCATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.18, C:0.28, G:0.35, T:0.19
Consensus pattern (30 bp):
CTACATGGGCTGGCCACACAGCCGTGTGAG
Found at i:91196682 original size:26 final size:26
Alignment explanation
Indices: 91196653--91196760 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
91196643 TGGTACAAAT
91196653 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
91196679 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
91196705 TGATAACGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
91196731 TGATAATTGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
91196757 TGAT
1 TGAT
91196761 GGGCATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.32, C:0.08, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:91199935 original size:54 final size:54
Alignment explanation
Indices: 91199853--91199960 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
91199843 TTTCGAATAC
91199853 AAAAAAAAATTCAAAAGAAACAGATTGTAAATTTTAAGTTCTGCGTGAAACGGT
1 AAAAAAAAATTCAAAAGAAACAGATTGTAAATTTTAAGTTCTGCGTGAAACGGT
91199907 AAAAAAAAATTCAAAAGAAACAGATTGTAAATTTTAAGTTCTGCGTGAAACGGT
1 AAAAAAAAATTCAAAAGAAACAGATTGTAAATTTTAAGTTCTGCGTGAAACGGT
91199961 GTGCAAAGAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.48, C:0.09, G:0.17, T:0.26
Consensus pattern (54 bp):
AAAAAAAAATTCAAAAGAAACAGATTGTAAATTTTAAGTTCTGCGTGAAACGGT
Found at i:91200156 original size:26 final size:26
Alignment explanation
Indices: 91200127--91200197 Score: 115
Period size: 26 Copynumber: 2.7 Consensus size: 26
91200117 CTTCAAATTA
*
91200127 TTTTATATATTATTTATTTTAAACTG
1 TTTTATATACTATTTATTTTAAACTG
* *
91200153 TTTTATATACTATATATTTTAAATTG
1 TTTTATATACTATTTATTTTAAACTG
91200179 TTTTATATACTATTTATTT
1 TTTTATATACTATTTATTT
91200198 GTTATCTCTT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.62
Consensus pattern (26 bp):
TTTTATATACTATTTATTTTAAACTG
Found at i:91203643 original size:30 final size:30
Alignment explanation
Indices: 91203607--91203707 Score: 175
Period size: 30 Copynumber: 3.4 Consensus size: 30
91203597 ACTTTTCTCA
91203607 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
91203637 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
91203667 ACTAGCCACACCTTCTCCACCACCAAATCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
91203697 ACTAGCCACAC
1 ACTAGCCACAC
91203708 TTGCTCCATT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 67 1.00
ACGTcount: A:0.28, C:0.50, G:0.04, T:0.19
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:91203715 original size:30 final size:29
Alignment explanation
Indices: 91203607--91203751 Score: 164
Period size: 30 Copynumber: 4.8 Consensus size: 29
91203597 ACTTTTCTCA
*
91203607 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACA-CTTCTCCACCACCAACTCC
* *
91203637 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCAC-ACTTCTCCACCACCAACTCC
*
91203667 ACTAGCCACACCTTCTCCACCACCAAATCC
1 ACTAGCCACA-CTTCTCCACCACCAACTCC
** *
91203697 ACTAGCCACACTTGCTCCATTACCTACTCC
1 ACTAGCCACACTT-CTCCACCACCAACTCC
* *
91203727 ATTAACCACACTTGCTCCACCACCA
1 ACTAGCCACACTT-CTCCACCACCA
91203752 CTTGTACCTA
Statistics
Matches: 99, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
29 3 0.03
30 96 0.97
ACGTcount: A:0.27, C:0.48, G:0.04, T:0.21
Consensus pattern (29 bp):
ACTAGCCACACTTCTCCACCACCAACTCC
Found at i:91204333 original size:25 final size:25
Alignment explanation
Indices: 91204305--91204418 Score: 90
Period size: 25 Copynumber: 4.5 Consensus size: 25
91204295 ATATTACGTA
*
91204305 TATATATATTTTATACTATTTTATT
1 TATATATATTTTATACTATATTATT
* * *
91204330 TATATATCTTTAATATTATATTATT
1 TATATATATTTTATACTATATTATT
* *
91204355 TATATATATATTTTTAC-ATGTTATCT
1 TATATATAT-TTTATACTATATTAT-T
* *
91204381 TATGTATATATCTTA-ACTATATTATG
1 TA--TATATATTTTATACTATATTATT
*
91204407 TATGTAT-TTTTA
1 TATATATATTTTA
91204419 ACACTATTAT
Statistics
Matches: 69, Mismatches: 15, Indels: 12
0.72 0.16 0.12
Matches are distributed among these distances:
23 4 0.06
24 4 0.06
25 35 0.51
26 11 0.16
27 8 0.12
28 7 0.10
ACGTcount: A:0.32, C:0.05, G:0.04, T:0.59
Consensus pattern (25 bp):
TATATATATTTTATACTATATTATT
Found at i:91204391 original size:30 final size:29
Alignment explanation
Indices: 91204280--91204391 Score: 85
Period size: 29 Copynumber: 4.0 Consensus size: 29
91204270 ATATATTAGG
* *
91204280 TATAT-TTTAAATTTTATATTACGTATATA
1 TATATCTTT-AATATTATATTATGTATATA
* *
91204309 TATAT-TTT-ATA--CTATT-T-TATTTA
1 TATATCTTTAATATTATATTATGTATATA
*
91204332 TATATCTTTAATATTATATTATTTATATA
1 TATATCTTTAATATTATATTATGTATATA
* * *
91204361 TATATTTTTACATGTTATCTTATGTATATA
1 TATATCTTTA-ATATTATATTATGTATATA
91204391 T
1 T
91204392 CTTAACTATA
Statistics
Matches: 66, Mismatches: 10, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
23 10 0.15
24 3 0.05
25 7 0.11
27 6 0.09
28 1 0.02
29 22 0.33
30 17 0.26
ACGTcount: A:0.34, C:0.04, G:0.03, T:0.59
Consensus pattern (29 bp):
TATATCTTTAATATTATATTATGTATATA
Found at i:91204410 original size:26 final size:26
Alignment explanation
Indices: 91204346--91204413 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 26
91204336 TCTTTAATAT
* * *
91204346 TATATTATTTATATATATATTTTTAC
1 TATATTATTTATGTATATATCTTAAC
*
91204372 -ATGTTATCTTATGTATATATCTTAAC
1 TATATTAT-TTATGTATATATCTTAAC
*
91204398 TATATTATGTATGTAT
1 TATATTATTTATGTAT
91204414 TTTTAACACT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
25 6 0.18
26 22 0.65
27 6 0.18
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.56
Consensus pattern (26 bp):
TATATTATTTATGTATATATCTTAAC
Found at i:91204477 original size:21 final size:20
Alignment explanation
Indices: 91204399--91204477 Score: 61
Period size: 23 Copynumber: 3.8 Consensus size: 20
91204389 TATCTTAACT
**
91204399 ATATTATGTATGTATTTTTAA
1 ATATTATGTACATATTTTT-A
91204420 CACTATTATGTACATATTTTTA
1 -A-TATTATGTACATATTTTTA
* * *
91204442 ATATTAT-CACGTATTTTTT
1 ATATTATGTACATATTTTTA
*
91204461 TTATATATGTACATATT
1 ATAT-TATGTACATATT
91204478 GATGTAGTAT
Statistics
Matches: 46, Mismatches: 8, Indels: 7
0.75 0.13 0.11
Matches are distributed among these distances:
19 12 0.26
20 9 0.20
21 7 0.15
22 2 0.04
23 16 0.35
ACGTcount: A:0.32, C:0.08, G:0.06, T:0.54
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:91204611 original size:16 final size:15
Alignment explanation
Indices: 91204587--91204634 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
91204577 TATTAATTAT
*
91204587 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
91204603 TATTTTAATATTTTA
1 TATTTTAATATTTTA
91204618 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
91204634 T
1 T
91204635 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:91204622 original size:7 final size:8
Alignment explanation
Indices: 91204587--91204638 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
91204577 TATTAATTAT
*
91204587 TATTCTAA
1 TATTTTAA
*
91204595 TATTTTGA
1 TATTTTAA
91204603 TATTTTAA
1 TATTTTAA
91204611 TATTTT-A
1 TATTTTAA
91204618 TATTTTATA
1 TATTTTA-A
*
91204627 TATTTTAT
1 TATTTTAA
91204635 TATT
1 TATT
91204639 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:91213083 original size:69 final size:67
Alignment explanation
Indices: 91212926--91213098 Score: 188
Period size: 69 Copynumber: 2.5 Consensus size: 67
91212916 CTTTCCAAGG
*** *
91212926 AAAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAGACACACCGAGGCATTTTTAATTTTT
91212990 TTT
65 TTT
* * *
91212993 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACACCGAGGCATTTTTAGTTTA
1 -AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-AGACACACCGAGGCATTTTTAATTT-
91213058 TGTTTT
63 T-TTTT
** * *
91213064 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
91213099 TTTAATTTTT
Statistics
Matches: 90, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
68 34 0.38
69 51 0.57
70 1 0.01
71 4 0.04
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.33
Consensus pattern (67 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGACACACCGAGGCATTTTTAATTTTTT
TT
Found at i:91213433 original size:127 final size:124
Alignment explanation
Indices: 91212988--91213487 Score: 445
Period size: 132 Copynumber: 3.9 Consensus size: 124
91212978 TTTTTAATTT
* * * * * * * *
91212988 TTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACACCGAGGCATTTTTA
1 TTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
* * ** **
91213053 GTTTATGTTTT-AAATTGACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTAATTT-TTG
66 ATTTCTGTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAA-CCTTTTAATTTCTAC
*
91213110 TTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
1 TTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
* * * *
91213175 ATTTCTGTTTTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTG-AGC-TTCAGATTACACA
66 ATTTCTG---TTTT--AAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTA-ATTTC-TA
91213238 C
124 C
**** * *
91213239 TGTGGTATT-TTTTTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAAT
1 T-T--T-TTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
* *
91213303 TTCAATTTCTGTTTGTCAAGAATCAAATCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTA
62 TTCAATTTCTGTTT-T-AA-AATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTA
91213368 C
124 C
* * * * *
91213369 TTTTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGATATTTTCA
1 TTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC-
* * *
91213434 AATTCTATTTTTATAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAACCT
65 AATT-TCTGTTT-T----AAAATCAACTCATATTGCGAGAGGTGAGTTGAACCT
91213488 CGGGACACGC
Statistics
Matches: 303, Mismatches: 51, Indels: 39
0.77 0.13 0.10
Matches are distributed among these distances:
122 61 0.20
125 4 0.01
126 5 0.02
127 52 0.17
128 32 0.11
129 13 0.04
130 32 0.11
131 37 0.12
132 65 0.21
133 2 0.01
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (124 bp):
TTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
ATTTCTGTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTAC
Found at i:91213463 original size:77 final size:76
Alignment explanation
Indices: 91213375--91213600 Score: 285
Period size: 77 Copynumber: 2.9 Consensus size: 76
91213365 CTACTTTTTC
* * *
91213375 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGATATTTTCAAATTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAAATTCT
91213440 ATTTTTATAAAA
66 ATTTTTAT-AAA
* * * *
91213452 AAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCGGGACACGCTGAGGTATTTTCAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAAATTCT
**
91213517 GCTTTT-TAAA
66 ATTTTTATAAA
* * **
91213527 AGAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGCCACACG-TCGAGGTCCTTTCAAAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGCT-GAGGTATTTTCAAAT
91213591 TCTATTTTTA
63 TCTATTTTTA
91213601 ATTTCTTTTT
Statistics
Matches: 126, Mismatches: 19, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
75 39 0.31
76 2 0.02
77 85 0.67
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (76 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAAATTCT
ATTTTTATAAA
Found at i:91213814 original size:71 final size:71
Alignment explanation
Indices: 91213714--91213851 Score: 249
Period size: 71 Copynumber: 1.9 Consensus size: 71
91213704 TCTGTTTTAT
* *
91213714 TCAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAGTCACATTGAGGTATTTTCAAT
1 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAAT
91213779 TTATCA
66 TTATCA
*
91213785 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACCCATTGAGGTATTTTCAAT
1 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAAT
91213850 TT
66 TT
91213852 TTGCTCAATT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
71 64 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (71 bp):
TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAAT
TTATCA
Found at i:91213950 original size:158 final size:158
Alignment explanation
Indices: 91213629--91214011 Score: 463
Period size: 158 Copynumber: 2.4 Consensus size: 158
91213619 ATGTGTTTCA
* * * *
91213629 AAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTGTTTTCCATTTCT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACCCTGAGGTATTTTCAATTTCT
** * * *
91213694 ATTTTCAATTTCTGTTTTATTCAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAGT
66 ATGCTCAATTTATGTTTTATTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
* *
91213759 CACATTGAGGTATTTTCAATTTATCATC
131 CACACTGAGGTATTTTAAATTTATCATC
91213787 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACCCATTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACCC--TGAGGTATTTTCAATTT
* *
91213852 -T-TGCTCAATTTATG-TTT-TTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
64 CTATGCTCAATTTATGTTTTATTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAA
* * **
91213912 GACACGCTGAGGTATTTTTAAATTTCTGTTTTTC
129 GACACACTGAGGTA-TTTTAAA-TT-T-ATCATC
* ** *
91213946 AAAAAATCAACTCATATTGCGA-AGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGAC-C-CTGAGGTATTTTCAATTT
91214010 CT
64 CT
91214012 GTTTGTCAAA
Statistics
Matches: 195, Mismatches: 21, Indels: 17
0.84 0.09 0.07
Matches are distributed among these distances:
155 48 0.25
156 9 0.05
157 5 0.03
158 89 0.46
159 28 0.14
160 16 0.08
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (158 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACCCTGAGGTATTTTCAATTTCT
ATGCTCAATTTATGTTTTATTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
CACACTGAGGTATTTTAAATTTATCATC
Found at i:91213979 original size:74 final size:72
Alignment explanation
Indices: 91213858--91214095 Score: 325
Period size: 75 Copynumber: 3.2 Consensus size: 72
91213848 ATTTTTGCTC
*
91213858 AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAG
91213923 GTATTTTT
65 GTATTTTT
91213931 AAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGA-AGGTGAGTTGAGCCTCGGGACACGCTG
1 -AATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTG
* *
91213995 AGGTAATTTC
63 AGGTATTTTT
* * * *
91214005 AATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGCTCACATGCTG
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG---ACACGCTG
*
91214070 AGGTCTTTTT
63 AGGTATTTTT
*
91214080 AATTTCTGCTTTTCAA
1 AATTTCTGTTTTTCAA
91214096 TTTCTATTTT
Statistics
Matches: 146, Mismatches: 13, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
72 22 0.15
73 28 0.19
74 47 0.32
75 49 0.34
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.35
Consensus pattern (72 bp):
AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGG
TATTTTT
Found at i:91214106 original size:14 final size:14
Alignment explanation
Indices: 91214075--91214125 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
91214065 TGCTGAGGTC
*
91214075 TTTTT-AATTTCTG
1 TTTTTCAATTTCTA
*
91214088 CTTTTCAATTTCTA
1 TTTTTCAATTTCTA
*
91214102 TTTTTTTCAATTTATA
1 --TTTTTCAATTTCTA
91214118 TTTTTCAA
1 TTTTTCAA
91214126 AAATCAACTC
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
16 12 0.39
ACGTcount: A:0.22, C:0.12, G:0.02, T:0.65
Consensus pattern (14 bp):
TTTTTCAATTTCTA
Found at i:91214110 original size:16 final size:16
Alignment explanation
Indices: 91214089--91214122 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
91214079 TAATTTCTGC
*
91214089 TTTTCAATTTCTATTT
1 TTTTCAATTTATATTT
91214105 TTTTCAATTTATATTT
1 TTTTCAATTTATATTT
91214121 TT
1 TT
91214123 CAAAAATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTCAATTTATATTT
Found at i:91214295 original size:77 final size:76
Alignment explanation
Indices: 91214197--91214448 Score: 382
Period size: 77 Copynumber: 3.3 Consensus size: 76
91214187 AAATCTACTT
*
91214197 TTGCGAGAAGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCTTTTCAAAAG
1 TTGCGAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCTTTTCAAAA-
91214262 AATCAACTCATA
65 AATCAACTCATA
*
91214274 TTGTGAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCTTTTCAAAAA
1 TTGCGAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCTTTTC-AAAA
91214339 AATCAACTCATA
65 AATCAACTCATA
** * ** *
91214351 TTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGC-GTTTTCAATTTCTGCTTTTC-AAA
1 TTGCGAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGA-GCTATTTTCAATTTCTGCTTTTCAAAA
91214414 AATCAACTCATA
65 AATCAACTCATA
*
91214426 TTGCGAGATGTGAGTTGAGCCTT
1 TTGCGAGAGGTGAGTTGAGCCTT
91214449 GGGTTTACAT
Statistics
Matches: 162, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
75 36 0.22
77 120 0.74
78 6 0.04
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (76 bp):
TTGCGAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCTTTTCAAAAA
ATCAACTCATA
Found at i:91215154 original size:30 final size:30
Alignment explanation
Indices: 91215120--91215294 Score: 219
Period size: 30 Copynumber: 5.8 Consensus size: 30
91215110 ACTTTTCTCA
* *
91215120 ACTAGCCACACATTTTCCACCACCAGCTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
91215150 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
91215180 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
91215210 ACTAGCCACACCTTCTCCACCACCAAATCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* ** *
91215240 ACTAGCCACA-CTTGCTCCATTACCTACTCC
1 ACTAGCCACACCTT-TTCCACCACCAACTCC
* *
91215270 ACTAACCACA-CTTGCTCCACCACCA
1 ACTAGCCACACCTT-TTCCACCACCA
91215295 CTTGTACCTA
Statistics
Matches: 130, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
29 3 0.02
30 127 0.98
ACGTcount: A:0.27, C:0.48, G:0.05, T:0.21
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:91215812 original size:23 final size:23
Alignment explanation
Indices: 91215775--91215904 Score: 81
Period size: 23 Copynumber: 5.5 Consensus size: 23
91215765 TTTTTTTTGT
91215775 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATATTA
* *
91215798 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATATTA
** *
91215820 TATTAGGTATATT-TTAAATTTTA
1 TATTATATATATTCTT-AATATTA
* *
91215843 TATTACGTATATATATTTTATACTATTT
1 TATTA--TATATAT-TCTTA-A-TATTA
91215871 TATT-TATATA-TCTTTAATATTA
1 TATTATATATATTC-TTAATATTA
*
91215893 TATTATTTATAT
1 TATTATATATAT
91215905 ATATATTTTT
Statistics
Matches: 81, Mismatches: 14, Indels: 23
0.69 0.12 0.19
Matches are distributed among these distances:
21 2 0.02
22 23 0.28
23 26 0.32
24 7 0.09
25 11 0.14
26 2 0.02
27 3 0.04
28 7 0.09
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (23 bp):
TATTATATATATTCTTAATATTA
Found at i:91215878 original size:25 final size:25
Alignment explanation
Indices: 91215841--91215988 Score: 97
Period size: 25 Copynumber: 5.9 Consensus size: 25
91215831 TTTTAAATTT
**
91215841 TATATTACGTATATATATTTTATAC
1 TATATTATTTATATATATTTTATAC
* * * *
91215866 TATTTTATTTATATATCTTTAATAT
1 TATATTATTTATATATATTTTATAC
*
91215891 TATATTATTTATATATATATTTTTAC
1 TATATTATTTATATATAT-TTTATAC
* *
91215917 -ATGTTATCTTATGTATATATCTTA-AC
1 TATATTAT-TTA--TATATATTTTATAC
* * *
91215943 TATATTATGTATGTAT-TTTTAACAC
1 TATATTATTTATATATATTTT-ATAC
* *
91215968 TATATTATGTACATAT-TTTTA
1 TATATTATTTATATATATTTTA
91215989 ATATTATCAC
Statistics
Matches: 96, Mismatches: 20, Indels: 15
0.73 0.15 0.11
Matches are distributed among these distances:
23 3 0.03
24 6 0.06
25 61 0.64
26 11 0.11
27 8 0.08
28 7 0.07
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.56
Consensus pattern (25 bp):
TATATTATTTATATATATTTTATAC
Found at i:91215915 original size:14 final size:14
Alignment explanation
Indices: 91215868--91215915 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
91215858 TTTTATACTA
*
91215868 TTTTATTTATATAT
1 TTTTATATATATAT
*
91215882 CTTTA-ATATTATAT
1 TTTTATATA-TATAT
91215896 TATTTATATATATAT
1 T-TTTATATATATAT
91215911 TTTTA
1 TTTTA
91215916 CATGTTATCT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
13 2 0.07
14 13 0.46
15 10 0.36
16 3 0.11
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (14 bp):
TTTTATATATATAT
Found at i:91215936 original size:30 final size:29
Alignment explanation
Indices: 91215875--91215936 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
91215865 CTATTTTATT
*
91215875 TATATATCTTTAATATTATATTATTTATA
1 TATATATCTTTAATATTATATTATGTATA
* * *
91215904 TATATATTTTTACATGTTATCTTATGTATA
1 TATATATCTTTA-ATATTATATTATGTATA
91215934 TAT
1 TAT
91215937 CTTAACTATA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 11 0.39
30 17 0.61
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (29 bp):
TATATATCTTTAATATTATATTATGTATA
Found at i:91215994 original size:20 final size:20
Alignment explanation
Indices: 91215969--91216024 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
91215959 TTTTAACACT
91215969 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
* * *
91215989 ATATTAT-CACGTATTTTTT
1 ATATTATGTACATATTTTTA
*
91216008 TTATATATGTACATATT
1 ATAT-TATGTACATATT
91216025 GATGTAGTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
19 12 0.43
20 10 0.36
21 6 0.21
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.55
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:91216142 original size:9 final size:8
Alignment explanation
Indices: 91216132--91216187 Score: 55
Period size: 8 Copynumber: 7.0 Consensus size: 8
91216122 ATATTAATTA
91216132 TTATTATT
1 TTATTATT
91216140 ATTA-TATT
1 -TTATTATT
91216148 TTGA-TATT
1 TT-ATTATT
*
91216156 TTAATATT
1 TTATTATT
91216164 TTA-TATT
1 TTATTATT
91216171 TTATATATT
1 TTAT-TATT
91216180 TTATTATT
1 TTATTATT
91216188 CACATCATTA
Statistics
Matches: 43, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
7 10 0.23
8 22 0.51
9 11 0.26
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (8 bp):
TTATTATT
Found at i:91216178 original size:16 final size:16
Alignment explanation
Indices: 91216142--91216183 Score: 68
Period size: 16 Copynumber: 2.6 Consensus size: 16
91216132 TTATTATTAT
91216142 TATATTTTGATATTTTA
1 TATATTTT-ATATTTTA
91216159 -ATATTTTATATTTTA
1 TATATTTTATATTTTA
91216174 TATATTTTAT
1 TATATTTTAT
91216184 TATTCACATC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.33
16 16 0.67
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (16 bp):
TATATTTTATATTTTA
Found at i:91216187 original size:24 final size:24
Alignment explanation
Indices: 91216132--91216187 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 24
91216122 ATATTAATTA
91216132 TTATTATTATTATATTTTGATATT
1 TTATTATTATTATATTTTGATATT
* *
91216156 TTAATATT-TTATATTTTATATATT
1 TTATTATTATTATATTTT-GATATT
91216180 TTATTATT
1 TTATTATT
91216188 CACATCATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 9 0.32
24 19 0.68
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (24 bp):
TTATTATTATTATATTTTGATATT
Found at i:91217157 original size:3 final size:3
Alignment explanation
Indices: 91217149--91217176 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
91217139 TCTTATTACT
91217149 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
91217177 CATCATCATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:91225207 original size:19 final size:19
Alignment explanation
Indices: 91225183--91225230 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
91225173 GTCTGTACTC
91225183 ACAGAGCCTAGGTCGTGTA
1 ACAGAGCCTAGGTCGTGTA
*
91225202 ACAGAGCCTAGGTCGTGTG
1 ACAGAGCCTAGGTCGTGTA
*
91225221 ACAAAGCCTA
1 ACAGAGCCTA
91225231 CGCGGTGTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.29, C:0.23, G:0.29, T:0.19
Consensus pattern (19 bp):
ACAGAGCCTAGGTCGTGTA
Found at i:91227173 original size:41 final size:41
Alignment explanation
Indices: 91227115--91227198 Score: 143
Period size: 41 Copynumber: 2.0 Consensus size: 41
91227105 CCCTATAACC
91227115 TTTTATACTTTACTCAATTTAGTCCTTAACA-TCAAAACTAT
1 TTTTATACTTTACTCAATTTAGTCCTTAACACT-AAAACTAT
*
91227156 TTTTATACTTTATTCAATTTAGTCCTTAACACTAAAACTAT
1 TTTTATACTTTACTCAATTTAGTCCTTAACACTAAAACTAT
91227197 TT
1 TT
91227199 AAATTTTCAC
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
41 40 0.98
42 1 0.02
ACGTcount: A:0.33, C:0.18, G:0.02, T:0.46
Consensus pattern (41 bp):
TTTTATACTTTACTCAATTTAGTCCTTAACACTAAAACTAT
Found at i:91231920 original size:19 final size:20
Alignment explanation
Indices: 91231898--91231942 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
91231888 CTGTTTTATT
91231898 ATGGGCC-AACTGTATTAAA
1 ATGGGCCTAACTGTATTAAA
* *
91231917 ATGGGCCTAACTGTGTTAAT
1 ATGGGCCTAACTGTATTAAA
91231937 ATGGGC
1 ATGGGC
91231943 AAGACCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (20 bp):
ATGGGCCTAACTGTATTAAA
Found at i:91234403 original size:12 final size:12
Alignment explanation
Indices: 91234386--91234410 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
91234376 TATTCTTTTT
91234386 AAAAGAATATCA
1 AAAAGAATATCA
91234398 AAAAGAATATCA
1 AAAAGAATATCA
91234410 A
1 A
91234411 CTTCCATGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.08, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAAGAATATCA
Found at i:91239828 original size:13 final size:14
Alignment explanation
Indices: 91239786--91239830 Score: 51
Period size: 13 Copynumber: 3.3 Consensus size: 14
91239776 TAATAATGAT
91239786 TAAAGTATATTATAA
1 TAAAGTA-ATTATAA
91239801 TAATA-TAA-TATAA
1 TAA-AGTAATTATAA
91239814 TAAAGTAATTA-AA
1 TAAAGTAATTATAA
91239827 TAAA
1 TAAA
91239831 ATAAATAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
12 1 0.04
13 17 0.63
14 3 0.11
15 5 0.19
16 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (14 bp):
TAAAGTAATTATAA
Found at i:91242161 original size:2 final size:2
Alignment explanation
Indices: 91242154--91242185 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
91242144 AAATAGAAAA
91242154 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
91242186 CAAATGGAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:91249175 original size:14 final size:15
Alignment explanation
Indices: 91249151--91249179 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
91249141 TTGTTAATAT
91249151 CCATTTGTCTGCAAA
1 CCATTTGTCTGCAAA
91249166 CCATTT-TCTGCAAA
1 CCATTTGTCTGCAAA
91249180 ATTGTGCAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.34
Consensus pattern (15 bp):
CCATTTGTCTGCAAA
Found at i:91249921 original size:49 final size:49
Alignment explanation
Indices: 91249864--91249957 Score: 170
Period size: 49 Copynumber: 1.9 Consensus size: 49
91249854 ACATGATAGC
* *
91249864 GATTAATGTATTTATTATACTTGTCAATATAACGATGGTTTTATCTAGA
1 GATTAATGTATTTAGTATACTTGTCAATACAACGATGGTTTTATCTAGA
91249913 GATTAATGTATTTAGTATACTTGTCAATACAACGATGGTTTTATC
1 GATTAATGTATTTAGTATACTTGTCAATACAACGATGGTTTTATC
91249958 CATCATTTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.32, C:0.10, G:0.15, T:0.44
Consensus pattern (49 bp):
GATTAATGTATTTAGTATACTTGTCAATACAACGATGGTTTTATCTAGA
Found at i:91251617 original size:15 final size:16
Alignment explanation
Indices: 91251588--91251620 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
91251578 TATTAAATGT
*
91251588 ATATAAATATTTAAAA
1 ATATAAATATATAAAA
91251604 ATAT-AATATATAAAA
1 ATATAAATATATAAAA
91251619 AT
1 AT
91251621 GTCAGAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
ATATAAATATATAAAA
Found at i:91251617 original size:23 final size:23
Alignment explanation
Indices: 91251587--91251639 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
91251577 CTATTAAATG
* *
91251587 TATATAAATAT-TTAAAAATATAA
1 TATATAAAAATGTCAAAAATAT-A
*
91251610 TATATAAAAATGTCAGAAATATA
1 TATATAAAAATGTCAAAAATATA
91251633 TATATAA
1 TATATAA
91251640 TCTAAAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 18 0.69
24 8 0.31
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (23 bp):
TATATAAAAATGTCAAAAATATA
Found at i:91251777 original size:18 final size:18
Alignment explanation
Indices: 91251739--91251777 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
91251729 AAAAAGGTAA
*
91251739 AAAATTTTAAAAATATTT
1 AAAATTTTAAAAATATAT
91251757 AAAATTATTAAAAAT-TAT
1 AAAATT-TTAAAAATATAT
91251775 AAA
1 AAA
91251778 TAATATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAATTTTAAAAATATAT
Found at i:91252096 original size:21 final size:22
Alignment explanation
Indices: 91252070--91252115 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
91252060 TTCTAGATTT
*
91252070 TATATATTT-TTTGAATTTTTA
1 TATATATTTATTTCAATTTTTA
*
91252091 TATATATTTATTTCTATTTTTA
1 TATATATTTATTTCAATTTTTA
91252113 TAT
1 TAT
91252116 TTTTTAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (22 bp):
TATATATTTATTTCAATTTTTA
Found at i:91256475 original size:22 final size:22
Alignment explanation
Indices: 91256450--91256505 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
91256440 TCGAATGCTC
*
91256450 TTTATTTCTTTGTTTCTTTTGT
1 TTTATTTCTTTGTTTCTTTTAT
*
91256472 TTTATGTT-ATTGTTTCTTTTAT
1 TTTAT-TTCTTTGTTTCTTTTAT
*
91256494 TTCATTTACTTT
1 TTTATTT-CTTT
91256506 ATGTTATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
21 2 0.07
22 21 0.78
23 4 0.15
ACGTcount: A:0.11, C:0.09, G:0.07, T:0.73
Consensus pattern (22 bp):
TTTATTTCTTTGTTTCTTTTAT
Found at i:91256725 original size:16 final size:17
Alignment explanation
Indices: 91256704--91256744 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
91256694 ATCTCATAAC
91256704 ATAATTAATATAAATT-
1 ATAATTAATATAAATTA
*
91256720 ATAATTTA-ATAAATTA
1 ATAATTAATATAAATTA
91256736 ATAA-TAATA
1 ATAATTAATA
91256745 ATAATAATAC
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATAATTAATATAAATTA
Found at i:91256763 original size:10 final size:10
Alignment explanation
Indices: 91256748--91256773 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
91256738 AATAATAATA
91256748 ATAATACACT
1 ATAATACACT
91256758 ATAATACACT
1 ATAATACACT
91256768 ATAATA
1 ATAATA
91256774 AATATCTACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (10 bp):
ATAATACACT
Found at i:91262753 original size:7 final size:7
Alignment explanation
Indices: 91262741--91262767 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
91262731 TTGTCTTGTA
91262741 TACCAAC
1 TACCAAC
91262748 TACCAAC
1 TACCAAC
91262755 TACCAAC
1 TACCAAC
91262762 TACCAA
1 TACCAA
91262768 GTTCGTTACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.41, G:0.00, T:0.15
Consensus pattern (7 bp):
TACCAAC
Found at i:91269746 original size:18 final size:19
Alignment explanation
Indices: 91269723--91269763 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
91269713 CTCTTGAACT
91269723 TGAACCT-TAGCCTCAACC
1 TGAACCTCTAGCCTCAACC
*
91269741 TGAACCTCTTGCCTCAACC
1 TGAACCTCTAGCCTCAACC
91269760 -GAAC
1 TGAAC
91269764 AATCTCTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.27, C:0.39, G:0.12, T:0.22
Consensus pattern (19 bp):
TGAACCTCTAGCCTCAACC
Found at i:91270408 original size:23 final size:24
Alignment explanation
Indices: 91270355--91270413 Score: 93
Period size: 25 Copynumber: 2.5 Consensus size: 24
91270345 ATGTTTTGTA
*
91270355 TTTTATTTAATATTAATATACTTAT
1 TTTTATTTAATATTAATATAC-AAT
91270380 TTTTATTTAATATTAATATA-AAT
1 TTTTATTTAATATTAATATACAAT
91270403 TTTTATTTAAT
1 TTTTATTTAAT
91270414 TAGATTTTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
23 13 0.39
25 20 0.61
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (24 bp):
TTTTATTTAATATTAATATACAAT
Found at i:91270572 original size:31 final size:31
Alignment explanation
Indices: 91270536--91270595 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
91270526 ATTTAACAGA
*
91270536 GAGTGATTAAAATAGAAACAATCTAAAACGT
1 GAGTGACTAAAATAGAAACAATCTAAAACGT
* **
91270567 GAGTGACTGAAATAGAAATGATCTAAAAC
1 GAGTGACTAAAATAGAAACAATCTAAAAC
91270596 ATTAATGGCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.50, C:0.10, G:0.18, T:0.22
Consensus pattern (31 bp):
GAGTGACTAAAATAGAAACAATCTAAAACGT
Found at i:91270866 original size:2 final size:2
Alignment explanation
Indices: 91270859--91270884 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
91270849 TAACTTAAGC
91270859 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
91270885 CCAATTCTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:91283475 original size:47 final size:47
Alignment explanation
Indices: 91283367--91283476 Score: 125
Period size: 47 Copynumber: 2.3 Consensus size: 47
91283357 CGGGATAAAT
* * *
91283367 ACATAGTGCTTCATCAGAACAAATCTAGAACTTTAACATTATAGTAC
1 ACATAGTGCTTCATCGGAACAAATCCAGAACTTTAACAGTATAGTAC
* * * *
91283414 ACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-AC
1 ACATAGTGCTTCATCGGAACAAATCCAGAACTTTAACAGTA-TAGTAC
91283461 ACATAGTG-TCTCATCG
1 ACATAGTGCT-TCATCG
91283477 ACTCAATGTC
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
46 1 0.02
47 49 0.94
48 2 0.04
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.26
Consensus pattern (47 bp):
ACATAGTGCTTCATCGGAACAAATCCAGAACTTTAACAGTATAGTAC
Found at i:91284248 original size:4 final size:4
Alignment explanation
Indices: 91284239--91284333 Score: 91
Period size: 4 Copynumber: 22.8 Consensus size: 4
91284229 CCCTTTTCTA
*
91284239 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TCTCAC GTTTGC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC T-T-TC -TTT-C
* * * ** *
91284287 TCTC TGTA ACTC TTTC TATC TTTC TTTC TTTC TTTC TTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT
91284334 TTAACTTACT
Statistics
Matches: 75, Mismatches: 12, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
4 68 0.91
5 3 0.04
6 3 0.04
7 1 0.01
ACGTcount: A:0.04, C:0.26, G:0.03, T:0.66
Consensus pattern (4 bp):
TTTC
Found at i:91290322 original size:47 final size:47
Alignment explanation
Indices: 91290213--91290315 Score: 127
Period size: 47 Copynumber: 2.2 Consensus size: 47
91290203 CCGAGATAAG
* * * *
91290213 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAATATTATAGTA
1 CACATAGTGCTTCATCCGAACAAATCCAGAACTTTAACAGTATAGTA
* * *
91290260 CACAAAGTACTTCATCCGAACAAATCCAGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCCGAACAAATCCAGAACTTTAACAGTA-TAGTA
91290307 CACATAGTG
1 CACATAGTG
91290316 TCTCATCGAC
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
47 44 0.96
48 2 0.04
ACGTcount: A:0.38, C:0.22, G:0.15, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCCGAACAAATCCAGAACTTTAACAGTATAGTA
Found at i:91291095 original size:4 final size:4
Alignment explanation
Indices: 91291086--91291174 Score: 79
Period size: 4 Copynumber: 21.8 Consensus size: 4
91291076 CCCTTTTCTA
** *
91291086 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TCAC GTTTGC TCTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC -TTT-C TTTC
* * ** * *
91291136 TGTA ACTC TTTC TATA TTTC TTTC TTTC TTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT
91291175 TTAACTTACT
Statistics
Matches: 67, Mismatches: 16, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
4 63 0.94
5 3 0.04
6 1 0.01
ACGTcount: A:0.06, C:0.25, G:0.03, T:0.66
Consensus pattern (4 bp):
TTTC
Found at i:91293505 original size:17 final size:18
Alignment explanation
Indices: 91293485--91293521 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
91293475 AAAAAATTTT
91293485 AAAG-TTATGAAAATA-AA
1 AAAGATTAT-AAAATAGAA
91293502 AAAGATTATAAAATAGAA
1 AAAGATTATAAAATAGAA
91293520 AA
1 AA
91293522 TTAAGAGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.22
Consensus pattern (18 bp):
AAAGATTATAAAATAGAA
Found at i:91302269 original size:43 final size:43
Alignment explanation
Indices: 91302208--91302296 Score: 178
Period size: 43 Copynumber: 2.1 Consensus size: 43
91302198 CCTTAAGTTA
91302208 TCTATTTCTTGACACTCAACTAGGATGATAGATGTTCTACCTC
1 TCTATTTCTTGACACTCAACTAGGATGATAGATGTTCTACCTC
91302251 TCTATTTCTTGACACTCAACTAGGATGATAGATGTTCTACCTC
1 TCTATTTCTTGACACTCAACTAGGATGATAGATGTTCTACCTC
91302294 TCT
1 TCT
91302297 GTCTTCGTAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (43 bp):
TCTATTTCTTGACACTCAACTAGGATGATAGATGTTCTACCTC
Found at i:91311025 original size:16 final size:16
Alignment explanation
Indices: 91311003--91311041 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
91310993 TTACTTATTA
91311003 ATTATAAACTCATT-T
1 ATTATAAACTCATTCT
*
91311018 AGTTATAAAGTCATTCT
1 A-TTATAAACTCATTCT
91311035 ATTATAA
1 ATTATAA
91311042 TATCGTGACT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 1 0.05
16 18 0.86
17 2 0.10
ACGTcount: A:0.41, C:0.10, G:0.05, T:0.44
Consensus pattern (16 bp):
ATTATAAACTCATTCT
Found at i:91319731 original size:10 final size:11
Alignment explanation
Indices: 91319710--91319741 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
91319700 TGATGCTTAA
91319710 TTTTTATAATT
1 TTTTTATAATT
91319721 TTTTTAT-A-T
1 TTTTTATAATT
91319730 TTTTTATAATT
1 TTTTTATAATT
91319741 T
1 T
91319742 CATAATGCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 8 0.42
10 2 0.11
11 9 0.47
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (11 bp):
TTTTTATAATT
Found at i:91319835 original size:22 final size:22
Alignment explanation
Indices: 91319801--91319854 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
91319791 ATTTTGTGTA
*
91319801 TTTA-TTTTTAAAATATTT-TT
1 TTTATTTTTTAAAAAATTTATT
91319821 TTTATTTTTTGAAAAAATTTATT
1 TTTATTTTTT-AAAAAATTTATT
*
91319844 TCTTGTTTTTT
1 T-TTATTTTTT
91319855 CATTGTGTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 4 0.14
21 5 0.18
22 8 0.29
23 3 0.11
24 8 0.29
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.69
Consensus pattern (22 bp):
TTTATTTTTTAAAAAATTTATT
Found at i:91323029 original size:31 final size:31
Alignment explanation
Indices: 91322994--91323052 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
91322984 TAAAATTGTC
91322994 ATTGAACTATTCAAAAGTTTTCATTTAAGTT
1 ATTGAACTATTCAAAAGTTTTCATTTAAGTT
** *
91323025 ATTGAACTATTTGAAAGTTTTTATTTAA
1 ATTGAACTATTCAAAAGTTTTCATTTAA
91323053 ATCATCAAGC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.36, C:0.07, G:0.10, T:0.47
Consensus pattern (31 bp):
ATTGAACTATTCAAAAGTTTTCATTTAAGTT
Found at i:91325180 original size:18 final size:17
Alignment explanation
Indices: 91325150--91325195 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 17
91325140 TTAGATTAAG
*
91325150 AAAATGAAAAAAAGATTTA
1 AAAAT-AAAAAAA-TTTTA
91325169 AATAATAAAAAAATTTTA
1 AA-AATAAAAAAATTTTA
91325187 AAAATAAAA
1 AAAATAAAA
91325196 GTACATAGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 7 0.28
18 6 0.24
19 9 0.36
20 3 0.12
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (17 bp):
AAAATAAAAAAATTTTA
Found at i:91326726 original size:31 final size:28
Alignment explanation
Indices: 91326691--91326747 Score: 78
Period size: 31 Copynumber: 1.9 Consensus size: 28
91326681 TTCTGAAATT
91326691 TAAAAAAATATAGGGACTAAATTTCTAAAAA
1 TAAAAAAATATA--GACTAAATTT-TAAAAA
*
91326722 TAAAAATATATAGACTAAATTTTAAA
1 TAAAAAAATATAGACTAAATTTTAAA
91326748 TTTATAAAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 4 0.16
29 10 0.40
31 11 0.44
ACGTcount: A:0.58, C:0.05, G:0.07, T:0.30
Consensus pattern (28 bp):
TAAAAAAATATAGACTAAATTTTAAAAA
Found at i:91328037 original size:197 final size:193
Alignment explanation
Indices: 91327574--91328158 Score: 888
Period size: 197 Copynumber: 3.0 Consensus size: 193
91327564 ATAAAGTTGG
*
91327574 TATCTTTTCTTTTTAGCTACATTTTTTTCTTAAATTAGTTACTAAATATTTCTATAGATTTGAAA
1 TATCTTTTCTTTTTAGCTACA--TTTTCCTTAAATTAGTTACTAAATATTTCTATAGATTTGAAA
91327639 ATTAGAGAAATTATTATGCCTCTTTCTGAATTATGATCTTGATCATCATAATCATGAAGTGTTTT
64 ATTAGAGAAATTATTATGCCTCTTTCTGAATTATGATCTTGATCATCATAATCATGAAGTGTTTT
* * * * *
91327704 TGTTAATCTCTTTTTTATATTCTTTATTAATTTATTTTTGCAGGGAGAAGTGAACAGGTTTTCAG
129 TGTTAATCT-TTTTTAATATTATTTATTAATTTAATTTTGCAGGGAGAAGAGAACAAGTTTTCAG
91327769 T
193 T
* * *
91327770 TATGTTTTCTTTTTAGCTAAATTTTCCTTAAATTAGTTACTAAATCTTTCTATAGATTTGAAAAT
1 TATCTTTTCTTTTTAGCTACATTTTCCTTAAATTAGTTACTAAATATTTCTATAGATTTGAAAAT
* * *
91327835 TAGAGAAATTATTATGCCTCTTTCTGAATTATGATCTTGATTATCATAATTACGAAGTGTTTTTG
66 TAGAGAAATTATTATGCCTCTTTCTGAATTATGATCTTGATCATCATAATCATGAAGTGTTTTTG
* *
91327900 TTAATCTTTTTTAGAAAATATTATTTGTTAATTTAATTTTGCCGGGAGAAGAGAACAAGTTTTCA
131 TTAATCTTTTTT----AATATTATTTATTAATTTAATTTTGCAGGGAGAAGAGAACAAGTTTTCA
91327965 GT
192 GT
*
91327967 TATCTTTTCTTTTTAGCTACATTTTCCTTAAATTAGTTACTAAATATTTCTTTAGATTTGAAAAT
1 TATCTTTTCTTTTTAGCTACATTTTCCTTAAATTAGTTACTAAATATTTCTATAGATTTGAAAAT
*
91328032 TAGAGAAATTATTATGCCTCTTTCTGAATTATGATCTTGATCATAATAATCATGAAGTGTTTTTG
66 TAGAGAAATTATTATGCCTCTTTCTGAATTATGATCTTGATCATCATAATCATGAAGTGTTTTTG
* * * * *
91328097 TTAATCTTTTTT--TCTT-TTTATTTATTTATTTTTTTCAGGGAGAAGAGAACAGGTTTTCAGT
131 TTAATCTTTTTTAATATTATTTATTAATTTA-ATTTTGCAGGGAGAAGAGAACAAGTTTTCAGT
91328158 T
1 T
91328159 TATGTTCATT
Statistics
Matches: 355, Mismatches: 29, Indels: 15
0.89 0.07 0.04
Matches are distributed among these distances:
190 10 0.03
191 32 0.09
193 5 0.01
194 111 0.31
196 19 0.05
197 178 0.50
ACGTcount: A:0.29, C:0.10, G:0.12, T:0.48
Consensus pattern (193 bp):
TATCTTTTCTTTTTAGCTACATTTTCCTTAAATTAGTTACTAAATATTTCTATAGATTTGAAAAT
TAGAGAAATTATTATGCCTCTTTCTGAATTATGATCTTGATCATCATAATCATGAAGTGTTTTTG
TTAATCTTTTTTAATATTATTTATTAATTTAATTTTGCAGGGAGAAGAGAACAAGTTTTCAGT
Found at i:91332664 original size:18 final size:17
Alignment explanation
Indices: 91332641--91332676 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
91332631 ATAATAAATA
*
91332641 TATATTTTTATTTTTAAT
1 TATATTTATA-TTTTAAT
91332659 TATATTTATATTTTAAT
1 TATATTTATATTTTAAT
91332676 T
1 T
91332677 TTAATTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TATATTTATATTTTAAT
Found at i:91332715 original size:20 final size:19
Alignment explanation
Indices: 91332643--91332718 Score: 57
Period size: 20 Copynumber: 3.9 Consensus size: 19
91332633 AATAAATATA
* * *
91332643 TATTTTTATTTTTAA-TTA
1 TATTTATATTTTCAATTTT
91332661 TATTTATATTTT-AATTTT
1 TATTTATATTTTCAATTTT
* **
91332679 AATTTTAATATAATCAATTTT
1 TA-TTT-ATATTTTCAATTTT
91332700 TATTATATATTTTCAATTT
1 TATT-TATATTTTCAATTT
91332719 GTGTATTGTT
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
17 2 0.04
18 14 0.31
19 3 0.07
20 18 0.40
21 8 0.18
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (19 bp):
TATTTATATTTTCAATTTT
Found at i:91332748 original size:40 final size:41
Alignment explanation
Indices: 91332704--91332793 Score: 110
Period size: 40 Copynumber: 2.2 Consensus size: 41
91332694 AATTTTTATT
91332704 ATATATTTTCAATTTGTGTATTGTTTTAAGAATTGTTTT-A
1 ATATATTTTCAATTTGTGTATTGTTTTAAGAATTGTTTTAA
** * * * *
91332744 ATATATTTTTTATTTGTTTCTTGTTTTAATATTTGTTTTAA
1 ATATATTTTCAATTTGTGTATTGTTTTAAGAATTGTTTTAA
*
91332785 ATGTATTTT
1 ATATATTTT
91332794 GATTATTTAA
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
40 33 0.79
41 9 0.21
ACGTcount: A:0.24, C:0.02, G:0.10, T:0.63
Consensus pattern (41 bp):
ATATATTTTCAATTTGTGTATTGTTTTAAGAATTGTTTTAA
Found at i:91337671 original size:18 final size:19
Alignment explanation
Indices: 91337645--91337690 Score: 60
Period size: 17 Copynumber: 2.4 Consensus size: 19
91337635 ATAAATAAAA
91337645 TATATTAAAAAAATT-ATAT
1 TATATT-AAAAAATTAATAT
91337664 TATA-TAAAAAATTAATAT
1 TATATTAAAAAATTAATAT
91337682 TAATATTAA
1 T-ATATTAA
91337691 TATATTTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 8 0.33
18 6 0.25
19 7 0.29
20 3 0.12
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (19 bp):
TATATTAAAAAATTAATAT
Found at i:91344125 original size:24 final size:23
Alignment explanation
Indices: 91344098--91344161 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 23
91344088 AGATCAAGAC
*
91344098 TAAAATTTTAAAATTAATAAAAT
1 TAAAATATTAAAATTAATAAAAT
* *
91344121 ATAAAAAATTAAAATTAATCAAAT
1 -TAAAATATTAAAATTAATAAAAT
**
91344145 TAAAATACAAAAATTAA
1 TAAAATATTAAAATTAA
91344162 ATTTTTTACT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
23 14 0.41
24 20 0.59
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (23 bp):
TAAAATATTAAAATTAATAAAAT
Found at i:91344135 original size:15 final size:15
Alignment explanation
Indices: 91344115--91344162 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
91344105 TTAAAATTAA
91344115 TAAAATATAAAAAAT
1 TAAAATATAAAAAAT
*
91344130 TAAAAT-TAATCAAAT
1 TAAAATATAA-AAAAT
*
91344145 TAAAATA-CAAAAAT
1 TAAAATATAAAAAAT
91344159 TAAA
1 TAAA
91344163 TTTTTTACTC
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
14 11 0.39
15 17 0.61
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (15 bp):
TAAAATATAAAAAAT
Found at i:91354817 original size:22 final size:21
Alignment explanation
Indices: 91354760--91354818 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 21
91354750 ACAAATTGAC
* * *
91354760 AATATAATAAAAAATGGTTAT
1 AATAAAATAAAAAATGATTAA
* *
91354781 ATTAAAATATTAAAATGATTAAA
1 AATAAAATA-AAAAATGATT-AA
91354804 AATAAAATAAAAAAT
1 AATAAAATAAAAAAT
91354819 ATATTAATAT
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
21 7 0.24
22 13 0.45
23 9 0.31
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (21 bp):
AATAAAATAAAAAATGATTAA
Found at i:91356557 original size:27 final size:27
Alignment explanation
Indices: 91356527--91356579 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
91356517 TAATCACTTT
*
91356527 AATATTAAATTTAATCTAATATTTATA
1 AATATTAAATTAAATCTAATATTTATA
* *
91356554 AATATTAGATTAAATTTAATATTTAT
1 AATATTAAATTAAATCTAATATTTAT
91356580 CTTATTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (27 bp):
AATATTAAATTAAATCTAATATTTATA
Found at i:91356664 original size:17 final size:17
Alignment explanation
Indices: 91356613--91356673 Score: 68
Period size: 17 Copynumber: 3.4 Consensus size: 17
91356603 ATCTACAAAA
91356613 TAAATTAAATTTAATAT
1 TAAATTAAATTTAATAT
* *
91356630 TAAGATCATTACTTTAATAT
1 TAA-AT--TAAATTTAATAT
91356650 TAAATTAAATTTAATAT
1 TAAATTAAATTTAATAT
*
91356667 CAAATTA
1 TAAATTA
91356674 TTAAAATAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
17 19 0.53
18 2 0.06
19 2 0.06
20 13 0.36
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (17 bp):
TAAATTAAATTTAATAT
Found at i:91357013 original size:13 final size:13
Alignment explanation
Indices: 91356995--91357019 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91356985 ATTTACGATC
91356995 TCAAGTCCAATTT
1 TCAAGTCCAATTT
91357008 TCAAGTCCAATT
1 TCAAGTCCAATT
91357020 ACCAATTTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.36
Consensus pattern (13 bp):
TCAAGTCCAATTT
Found at i:91359092 original size:18 final size:18
Alignment explanation
Indices: 91359069--91359109 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
91359059 AGCCAAATCC
91359069 GTAGGGATCTTCTTTCAT
1 GTAGGGATCTTCTTTCAT
91359087 GTAGGGATCTTCTTTCAT
1 GTAGGGATCTTCTTTCAT
*
91359105 ATAGG
1 GTAGG
91359110 AGTCCGCCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.20, C:0.15, G:0.24, T:0.41
Consensus pattern (18 bp):
GTAGGGATCTTCTTTCAT
Found at i:91361789 original size:93 final size:93
Alignment explanation
Indices: 91361630--91361816 Score: 365
Period size: 93 Copynumber: 2.0 Consensus size: 93
91361620 TGAACCAAAG
*
91361630 AGAAGAAGTGTGTATGGAAAATATTCTTATTGCTAGCTTTTTACTTCAGCATGAGTTTATTACTA
1 AGAAGAAGTGTGTATGGAAAATATTATTATTGCTAGCTTTTTACTTCAGCATGAGTTTATTACTA
91361695 TGTTCATTTTATGTTATATTTTAAAGCT
66 TGTTCATTTTATGTTATATTTTAAAGCT
91361723 AGAAGAAGTGTGTATGGAAAATATTATTATTGCTAGCTTTTTACTTCAGCATGAGTTTATTACTA
1 AGAAGAAGTGTGTATGGAAAATATTATTATTGCTAGCTTTTTACTTCAGCATGAGTTTATTACTA
91361788 TGTTCATTTTATGTTATATTTTAAAGCT
66 TGTTCATTTTATGTTATATTTTAAAGCT
91361816 A
1 A
91361817 TTTGTTTTTT
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 93 1.00
ACGTcount: A:0.30, C:0.09, G:0.16, T:0.45
Consensus pattern (93 bp):
AGAAGAAGTGTGTATGGAAAATATTATTATTGCTAGCTTTTTACTTCAGCATGAGTTTATTACTA
TGTTCATTTTATGTTATATTTTAAAGCT
Found at i:91361858 original size:3 final size:3
Alignment explanation
Indices: 91361850--91361904 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
91361840 GATTTTGCTT
91361850 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
91361898 TTA TTA T
1 TTA TTA T
91361905 AAATCGAGGA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:91375751 original size:312 final size:312
Alignment explanation
Indices: 91375186--91375814 Score: 945
Period size: 312 Copynumber: 2.0 Consensus size: 312
91375176 AAGTTGCTTG
* * **
91375186 TCTGAGGAAGACTGATCAGAAGCAATTTCTTCTTTTTTAACTAACTGAAGCTCATTTAGCTCTTC
1 TCTGAGGAAGACTGACCAGAAGCAATTTCTTCTCTAGTAACTAACTGAAGCTCATTTAGCTCTTC
* ** * * *
91375251 TGTTACTCCAGCTGATGAGTCTTCATGGTTCCCATTGTGAAGCTTTTCAGTTTCTTTCCCTTTTT
66 TGTTACTCCAGCTGACGAGTCTTCAAAGTTCCCATCGTCAAGCTTTTCAGCTTCTTTCCCTTTTT
* *
91375316 CTTTGTTTGCTTCAATCTCTTGTGATTCCTCAGTTAAGGAAGCCTGAGCAATAATGGTTTCTTGA
131 CTTCGTTTGCTTCAATCTCTTGTGATTCCTCAGTTAAGGAAGCCTGAACAATAATGGTTTCTTGA
* *
91375381 TCTATAACAGCTTTAGGCTCCTGAGGTCCTTCCTTTTCGAGAAGTTCCACTTCCTTCACCTTTTC
196 TCCATAACAGCTTCAGGCTCCTGAGGTCCTTCCTTTTCGAGAAGTTCCACTTCCTTCACCTTTTC
* * **
91375446 CCCCTCTTCTTCATTGGCCTCAGCTCCATGCTTTAGGTTCTCTTCAGTCAAT
261 CCCCTCTTCTTCACTGGCCTCAGCTCCACGCTTTAGGTTCTCAACAGTCAAT
* *
91375498 TCTGAGGAAGACTGACCAGAAGCAATTTCTTCTCTAGTAACTAATTGAAGCTCATTTAGCTTTTC
1 TCTGAGGAAGACTGACCAGAAGCAATTTCTTCTCTAGTAACTAACTGAAGCTCATTTAGCTCTTC
* * **
91375563 TGTTTCTCCAGCTGACGAGTCTTCAAATTTCCCATCGTCAAGCTTTTTGGCTTCTTT-CCTTTTC
66 TGTTACTCCAGCTGACGAGTCTTCAAAGTTCCCATCGTCAAGCTTTTCAGCTTCTTTCCCTTTT-
* * ** *
91375627 TCTTCGTTTGCTTCAATCTTTTGTGATTCCTCTGTTATTGAAGCCTGAACTATAATGGTTTCTTG
130 TCTTCGTTTGCTTCAATCTCTTGTGATTCCTCAGTTAAGGAAGCCTGAACAATAATGGTTTCTTG
* *
91375692 ATCCATAACAGCTTCAGGCTCCTGAGGTCTTTCCTTTTCGAGAATTTCCACTTCCTTCACCTTTT
195 ATCCATAACAGCTTCAGGCTCCTGAGGTCCTTCCTTTTCGAGAAGTTCCACTTCCTTCACCTTTT
**
91375757 CTTCCTCTTCTTCACTGGCCTCAGCTCCACGCTTTAGGTTCTCAACAGTCAAT
260 CCCCCTCTTCTTCACTGGCCTCAGCTCCACGCTTTAGGTTCTCAACAGTCAAT
91375810 TCTGA
1 TCTGA
91375815 AGGCAAAGAT
Statistics
Matches: 283, Mismatches: 33, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
311 6 0.02
312 277 0.98
ACGTcount: A:0.19, C:0.26, G:0.15, T:0.40
Consensus pattern (312 bp):
TCTGAGGAAGACTGACCAGAAGCAATTTCTTCTCTAGTAACTAACTGAAGCTCATTTAGCTCTTC
TGTTACTCCAGCTGACGAGTCTTCAAAGTTCCCATCGTCAAGCTTTTCAGCTTCTTTCCCTTTTT
CTTCGTTTGCTTCAATCTCTTGTGATTCCTCAGTTAAGGAAGCCTGAACAATAATGGTTTCTTGA
TCCATAACAGCTTCAGGCTCCTGAGGTCCTTCCTTTTCGAGAAGTTCCACTTCCTTCACCTTTTC
CCCCTCTTCTTCACTGGCCTCAGCTCCACGCTTTAGGTTCTCAACAGTCAAT
Found at i:91386237 original size:6 final size:6
Alignment explanation
Indices: 91386228--91386314 Score: 120
Period size: 6 Copynumber: 14.5 Consensus size: 6
91386218 TCTTTTCTCT
* * * *
91386228 TTCAGC TTCAGC TTCAGC ATCAGC ATCAGC ATCAGC TTCATC TTCAGC
1 TTCAGC TTCAGC TTCAGC TTCAGC TTCAGC TTCAGC TTCAGC TTCAGC
* *
91386276 TTCAGC ATCAGC ATCAGC TTCAGC TTCAGC TTCAGC TTC
1 TTCAGC TTCAGC TTCAGC TTCAGC TTCAGC TTCAGC TTC
91386315 CTTTATGTCT
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 75 1.00
ACGTcount: A:0.22, C:0.33, G:0.15, T:0.30
Consensus pattern (6 bp):
TTCAGC
Found at i:91386265 original size:30 final size:30
Alignment explanation
Indices: 91386229--91386311 Score: 148
Period size: 30 Copynumber: 2.8 Consensus size: 30
91386219 CTTTTCTCTT
*
91386229 TCAGCTTCAGCTTCAGCATCAGCATCAGCA
1 TCAGCTTCAGCTTCAGCTTCAGCATCAGCA
*
91386259 TCAGCTTCATCTTCAGCTTCAGCATCAGCA
1 TCAGCTTCAGCTTCAGCTTCAGCATCAGCA
91386289 TCAGCTTCAGCTTCAGCTTCAGC
1 TCAGCTTCAGCTTCAGCTTCAGC
91386312 TTCCTTTATG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.23, C:0.34, G:0.16, T:0.28
Consensus pattern (30 bp):
TCAGCTTCAGCTTCAGCTTCAGCATCAGCA
Found at i:91401097 original size:21 final size:22
Alignment explanation
Indices: 91401073--91401117 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
91401063 GAAACATATT
91401073 AAAAGAATG-AAGAGAGAAAAA
1 AAAAGAATGAAAGAGAGAAAAA
**
91401094 AAAAGGCTGATAAGAGAGAAAAA
1 AAAAGAATGA-AAGAGAGAAAAA
91401117 A
1 A
91401118 GGAACAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 7 0.35
23 13 0.65
ACGTcount: A:0.67, C:0.02, G:0.24, T:0.07
Consensus pattern (22 bp):
AAAAGAATGAAAGAGAGAAAAA
Found at i:91406153 original size:31 final size:30
Alignment explanation
Indices: 91406118--91406189 Score: 78
Period size: 29 Copynumber: 2.4 Consensus size: 30
91406108 GTTGACAATT
* *
91406118 GGACTTGAATT-TTAAAATCTAAGAAGTATAG
1 GGACTTAAATTCTTAAAA-CTAA-AAGTAGAG
*
91406149 GGAC-TAAATTCTTAAAAGTAAAAGTAGAG
1 GGACTTAAATTCTTAAAACTAAAAGTAGAG
91406178 GGAC-TAAATTCT
1 GGACTTAAATTCT
91406190 ATATGTGTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
29 19 0.51
30 8 0.22
31 10 0.27
ACGTcount: A:0.43, C:0.08, G:0.19, T:0.29
Consensus pattern (30 bp):
GGACTTAAATTCTTAAAACTAAAAGTAGAG
Found at i:91406686 original size:4 final size:4
Alignment explanation
Indices: 91406679--91406706 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
91406669 TGTGTGTATG
91406679 CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA
91406707 GAGAGAGAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:91408307 original size:45 final size:45
Alignment explanation
Indices: 91408256--91408343 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 45
91408246 GGTATCATCA
91408256 AAAAGGTTGAATTTTGATGATCAGGTGAGAGAGGAAATTGGGTCT
1 AAAAGGTTGAATTTTGATGATCAGGTGAGAGAGGAAATTGGGTCT
*
91408301 AAAAGGTTGAATTTTGATGATCAGGTGAGAGAGGAATTTGGGT
1 AAAAGGTTGAATTTTGATGATCAGGTGAGAGAGGAAATTGGGT
91408344 TAGATTTGAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.33, C:0.03, G:0.34, T:0.30
Consensus pattern (45 bp):
AAAAGGTTGAATTTTGATGATCAGGTGAGAGAGGAAATTGGGTCT
Found at i:91411077 original size:99 final size:98
Alignment explanation
Indices: 91410967--91411155 Score: 317
Period size: 99 Copynumber: 1.9 Consensus size: 98
91410957 TTTCTATCCT
*
91410967 TTTTATTATTATTTGTTTTATAATATTTTAAATATATATTTTTTTGGTGGAGCCATTCTAAATGG
1 TTTTATTATTATTTGTTTTATAATATTTTAAATATATAATTTTTTGGTGGAGCCATTCTAAATGG
91411032 CGCCA-CTAGTTCATTTAAACTTTTTGTTTAAAC
66 CGCCATCT-GTTCATTTAAACTTTTTGTTTAAAC
*
91411065 TTTTATTTATTATTTGTTTTATAATATTTTAAATGTATAATTTTTTGGTGGAGCCATTCTAAATG
1 TTTTA-TTATTATTTGTTTTATAATATTTTAAATATATAATTTTTTGGTGGAGCCATTCTAAATG
* *
91411130 GTGCCATCTGTTTATTTAAACTTTTT
65 GCGCCATCTGTTCATTTAAACTTTTT
91411156 TAAAATTTTT
Statistics
Matches: 85, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
98 5 0.06
99 78 0.92
100 2 0.02
ACGTcount: A:0.26, C:0.09, G:0.12, T:0.53
Consensus pattern (98 bp):
TTTTATTATTATTTGTTTTATAATATTTTAAATATATAATTTTTTGGTGGAGCCATTCTAAATGG
CGCCATCTGTTCATTTAAACTTTTTGTTTAAAC
Found at i:91411601 original size:25 final size:21
Alignment explanation
Indices: 91411573--91411621 Score: 53
Period size: 21 Copynumber: 2.1 Consensus size: 21
91411563 TATACATTTA
91411573 AAATATTATAAAACAAATAATAAAT
1 AAAT-TTATAAAA-AAAT--TAAAT
*
91411598 AAATTTTTAAAAAAATTAAAT
1 AAATTTATAAAAAAATTAAAT
91411619 AAA
1 AAA
91411622 CAGATGACTC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 8 0.35
23 4 0.17
24 7 0.30
25 4 0.17
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (21 bp):
AAATTTATAAAAAAATTAAAT
Found at i:91411760 original size:24 final size:24
Alignment explanation
Indices: 91411714--91411761 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
91411704 TCTAGTAGTG
*
91411714 GACATTGGAAATTGGTGGAGCCAA
1 GACATTGGAAATTGGTAGAGCCAA
*
91411738 GACATTGGAAATTGGTAGTGCCAA
1 GACATTGGAAATTGGTAGAGCCAA
91411762 ATTATTTGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.12, G:0.31, T:0.23
Consensus pattern (24 bp):
GACATTGGAAATTGGTAGAGCCAA
Found at i:91413607 original size:47 final size:47
Alignment explanation
Indices: 91413550--91413726 Score: 211
Period size: 47 Copynumber: 3.8 Consensus size: 47
91413540 TGGTTGAACA
*
91413550 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAACG
* * *
91413597 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA--A--CG
* *
91413644 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCG-AACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAACG
* *
91413690 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
91413727 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
43 2 0.02
44 5 0.05
45 1 0.01
46 37 0.34
47 57 0.52
48 3 0.03
50 5 0.05
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAACG
Found at i:91416607 original size:3 final size:3
Alignment explanation
Indices: 91416599--91416627 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
91416589 AAATGTAATA
91416599 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
91416628 AATGTTGAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:91417975 original size:20 final size:22
Alignment explanation
Indices: 91417923--91417976 Score: 64
Period size: 19 Copynumber: 2.7 Consensus size: 22
91417913 AATTTAAAAT
91417923 ATATTTTAAAA-AT--TAATAA
1 ATATTTTAAAATATCATAATAA
*
91417942 ATATTTTAAAATATCATAATTA
1 ATATTTTAAAATATCATAATAA
91417964 ATA-TTT-AAATATC
1 ATATTTTAAAATATC
91417977 CTTGTTTTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
19 11 0.35
20 9 0.29
21 3 0.10
22 8 0.26
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (22 bp):
ATATTTTAAAATATCATAATAA
Found at i:91418677 original size:20 final size:21
Alignment explanation
Indices: 91418646--91418698 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
91418636 AGTGGGTTGG
*
91418646 TTTAAT-TGTTTTAATTAATT
1 TTTAATATATTTTAATTAATT
* **
91418666 TTTAA-ATATTTTTATTGGTT
1 TTTAATATATTTTAATTAATT
91418686 TTTAATATATTTT
1 TTTAATATATTTT
91418699 TAAATTATGA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 20 0.74
21 7 0.26
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (21 bp):
TTTAATATATTTTAATTAATT
Found at i:91423021 original size:21 final size:22
Alignment explanation
Indices: 91422992--91423038 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
91422982 CAGAAGGAGT
*
91422992 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
91423014 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
91423035 GAGT
1 GAGT
91423039 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:91424017 original size:30 final size:30
Alignment explanation
Indices: 91423975--91424044 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
91423965 TTACTTTGGT
* *
91423975 AAATAGTAAAATTAT-ATTTTGATCATTTAA
1 AAATAATAAAATTATGA-TTTAATCATTTAA
* * *
91424005 AAATGATAAAATTTTGATTTAATCTTTTAA
1 AAATAATAAAATTATGATTTAATCATTTAA
91424035 AAATAATAAA
1 AAATAATAAA
91424045 GATATAAACT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
30 32 0.97
31 1 0.03
ACGTcount: A:0.50, C:0.03, G:0.06, T:0.41
Consensus pattern (30 bp):
AAATAATAAAATTATGATTTAATCATTTAA
Found at i:91429490 original size:12 final size:13
Alignment explanation
Indices: 91429473--91429509 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
91429463 GAACCGGACA
91429473 CGAACCGAA-CTC
1 CGAACCGAAGCTC
91429485 CGAACC-AAGCTC
1 CGAACCGAAGCTC
*
91429497 CGAACCGTAGCTC
1 CGAACCGAAGCTC
91429510 TGATGCCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
11 2 0.09
12 15 0.68
13 5 0.23
ACGTcount: A:0.30, C:0.41, G:0.19, T:0.11
Consensus pattern (13 bp):
CGAACCGAAGCTC
Found at i:91435419 original size:19 final size:20
Alignment explanation
Indices: 91435395--91435435 Score: 75
Period size: 19 Copynumber: 2.1 Consensus size: 20
91435385 TGATTCATTA
91435395 ACGTGGTGCTAAGTGG-TAT
1 ACGTGGTGCTAAGTGGATAT
91435414 ACGTGGTGCTAAGTGGATAT
1 ACGTGGTGCTAAGTGGATAT
91435434 AC
1 AC
91435436 CACAGTTACA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.24, C:0.12, G:0.34, T:0.29
Consensus pattern (20 bp):
ACGTGGTGCTAAGTGGATAT
Found at i:91435700 original size:16 final size:17
Alignment explanation
Indices: 91435661--91435701 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
91435651 TTAGATATGT
91435661 GATTGAATTTTTGATAA
1 GATTGAATTTTTGATAA
91435678 GATTGAATTTTTGATAA
1 GATTGAATTTTTGATAA
91435695 GA-TGAAT
1 GATTGAAT
91435702 ATGGATAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.21
17 19 0.79
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.44
Consensus pattern (17 bp):
GATTGAATTTTTGATAA
Found at i:91451244 original size:23 final size:23
Alignment explanation
Indices: 91451218--91451262 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
91451208 TGGGTATGTA
*
91451218 ATGACGTTATCTT-ACAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
91451241 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
91451263 TTAAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:91458858 original size:23 final size:23
Alignment explanation
Indices: 91458832--91458876 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
91458822 TGGGTATGTA
*
91458832 ATGACGTTATCTT-ACAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
91458855 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
91458877 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:91461409 original size:63 final size:63
Alignment explanation
Indices: 91461287--91461410 Score: 223
Period size: 62 Copynumber: 2.0 Consensus size: 63
91461277 TTCACACACT
* *
91461287 CTCCAAAATCGATTTATTTTCCTAAATCTTGAAAAAACGATCTATTCGACCAATTAAAAAAAA
1 CTCCAAAATCGATTTATTTTCCTAAATATTGAAAAAACGACCTATTCGACCAATTAAAAAAAA
91461350 CTCCAAAATCGATTTATTTTCCTAAATATT-AAAAAACGACCTATTCGACCAATTAAAAAAA
1 CTCCAAAATCGATTTATTTTCCTAAATATTGAAAAAACGACCTATTCGACCAATTAAAAAAA
91461411 TTCTACATAT
Statistics
Matches: 59, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
62 30 0.51
63 29 0.49
ACGTcount: A:0.45, C:0.19, G:0.06, T:0.30
Consensus pattern (63 bp):
CTCCAAAATCGATTTATTTTCCTAAATATTGAAAAAACGACCTATTCGACCAATTAAAAAAAA
Found at i:91463457 original size:22 final size:20
Alignment explanation
Indices: 91463405--91463445 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
91463395 TAATTATTGT
*
91463405 TATATTTAATTTAATAAAAA
1 TATATATAATTTAATAAAAA
91463425 TATATATAATTTAATAAAAA
1 TATATATAATTTAATAAAAA
91463445 T
1 T
91463446 TTCAATATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
TATATATAATTTAATAAAAA
Found at i:91463485 original size:32 final size:32
Alignment explanation
Indices: 91463449--91463635 Score: 91
Period size: 27 Copynumber: 6.2 Consensus size: 32
91463439 TAAAAATTTC
91463449 AATATAATTATTTTTATATTAAATTATATTAA
1 AATATAATTATTTTTATATTAAATTATATTAA
* * * * *
91463481 AATATTTCAAATATTTTTATAATTTAATAAAAATAA
1 AATA--T-AATTATTTTTAT-ATTAAATTATATTAA
*
91463517 AA-AT-A-TATAATTTA-A-TAACATT-T-TT--
1 AATATAATTAT-TTTTATATTAA-ATTATATTAA
91463542 AATATAATTATTTTTATATTAAATTATATTAA
1 AATATAATTATTTTTATATTAAATTATATTAA
* * * *
91463574 AATAT-TTTA-TTTTAAATT--A-TATTTTGA
1 AATATAATTATTTTTATATTAAATTATATTAA
* * *
91463601 AATA-AAATA-GTTTCTATTAAATTATATTAA
1 AATATAATTATTTTTATATTAAATTATATTAA
91463631 AATAT
1 AATAT
91463636 TAGAAATATT
Statistics
Matches: 113, Mismatches: 22, Indels: 41
0.64 0.12 0.23
Matches are distributed among these distances:
25 2 0.02
26 2 0.02
27 24 0.21
28 10 0.09
29 8 0.07
30 23 0.20
31 8 0.07
32 9 0.08
33 1 0.01
34 1 0.01
35 12 0.11
36 13 0.12
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.50
Consensus pattern (32 bp):
AATATAATTATTTTTATATTAAATTATATTAA
Found at i:91463546 original size:93 final size:89
Alignment explanation
Indices: 91463411--91463580 Score: 277
Period size: 93 Copynumber: 1.9 Consensus size: 89
91463401 TTGTTATATT
91463411 TAATTTAATAAAAATATATATAATTTAATAAAAATTTCAATATAATTATTTTTATATTAAATTAT
1 TAATTTAATAAAAATATATATAATTTAATAAAAATTTCAATATAATTATTTTTATATTAAATTAT
91463476 ATTAAAATATTTCAAATATTTTTA
66 ATTAAAATATTTCAAATATTTTTA
* * *
91463500 TAATTTAATAAAAATAAAAATATATAATTTAATAACATTTTTAATATAATTATTTTTATATTAAA
1 TAATTTAATAAAAAT----ATATATAATTTAATAAAAATTTCAATATAATTATTTTTATATTAAA
91463565 TTATATTAAAATATTT
62 TTATATTAAAATATTT
91463581 TATTTTAAAT
Statistics
Matches: 74, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
89 15 0.20
93 59 0.80
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (89 bp):
TAATTTAATAAAAATATATATAATTTAATAAAAATTTCAATATAATTATTTTTATATTAAATTAT
ATTAAAATATTTCAAATATTTTTA
Found at i:91463594 original size:93 final size:88
Alignment explanation
Indices: 91463398--91463594 Score: 247
Period size: 93 Copynumber: 2.2 Consensus size: 88
91463388 TTTAATATAA
91463398 TTATTGTTATATT-TAATTTAATAAAAATATATATAATTTAATAAAAATTTCAATATAATTATTT
1 TTATT-TTA-ATTATAATTTAATAAAAATATATATAATTTAATAAAAATTTCAATATAATTATTT
91463462 TTATATTAAATTATATTAAAATATT
64 TTATATTAAATTATATTAAAATATT
* * * *
91463487 TCAAATATTT--TTATAATTTAATAAAAATAAAAATATATAATTTAATAACATTTTTAATATAAT
1 T--TAT-TTTAATTATAATTTAATAAAAAT----ATATATAATTTAATAAAAATTTCAATATAAT
91463550 TATTTTTATATTAAATTATATTAAAATATT
59 TATTTTTATATTAAATTATATTAAAATATT
91463580 TTATTTTAAATTATA
1 TTATTTT-AATTATA
91463595 TTTTGAAATA
Statistics
Matches: 92, Mismatches: 5, Indels: 18
0.80 0.04 0.16
Matches are distributed among these distances:
88 2 0.02
89 16 0.17
90 3 0.03
91 6 0.07
92 1 0.01
93 64 0.70
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.50
Consensus pattern (88 bp):
TTATTTTAATTATAATTTAATAAAAATATATATAATTTAATAAAAATTTCAATATAATTATTTTT
ATATTAAATTATATTAAAATATT
Found at i:91470316 original size:41 final size:42
Alignment explanation
Indices: 91470241--91470393 Score: 220
Period size: 41 Copynumber: 3.7 Consensus size: 42
91470231 CGTGTTTTAC
* * * * * *
91470241 TTTCTATTTAGCTCTTATGAGCTTTTGTTCAACTCATATGAG
1 TTTCTGTTCAGCTCTTACGAGCTTCTGTTAAACTCTTATGAG
*
91470283 TTTCTGTTCAGCTC-TACGAGCTTCTGTTGAACTCTTATGAG
1 TTTCTGTTCAGCTCTTACGAGCTTCTGTTAAACTCTTATGAG
91470324 TTTCTGTTCAGCTC-TACGAGCTTCTGTTAAACTCTTATGAG
1 TTTCTGTTCAGCTCTTACGAGCTTCTGTTAAACTCTTATGAG
*
91470365 TTTCTGTTCAGCTCTTACGAGCCTCTGTT
1 TTTCTGTTCAGCTCTTACGAGCTTCTGTT
91470394 CAGCTTTCGA
Statistics
Matches: 102, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
41 77 0.75
42 25 0.25
ACGTcount: A:0.18, C:0.22, G:0.17, T:0.44
Consensus pattern (42 bp):
TTTCTGTTCAGCTCTTACGAGCTTCTGTTAAACTCTTATGAG
Found at i:91470370 original size:62 final size:60
Alignment explanation
Indices: 91470252--91470414 Score: 150
Period size: 62 Copynumber: 2.6 Consensus size: 60
91470242 TTCTATTTAG
* * * * *
91470252 CTCTTATGAGCTTT-TGTTCAACTCATATGAGTTTCTGTTCAGCTCTACGAGCTTCTGTTGAA
1 CTCTTATGAG-TTTCTGTTCAGCTC-TACGAG-TTCTGTTAAACTCTACGAGCTTCTGTTCAA
* * *
91470314 CTCTTATGAGTTTCTGTTCAGCTCTACGAGCTTCTGTTAAACTCTTATGAGTTTCTGTTCAG
1 CTCTTATGAGTTTCTGTTCAGCTCTACGAG-TTCTGTTAAACTC-TACGAGCTTCTGTTCAA
* ** *
91470376 CTCTTACGAGCCTCTGTTCAGCT-TTCGAGTTCTTGTTAA
1 CTCTTATGAGTTTCTGTTCAGCTCTACGAGTTC-TGTTAA
91470415 CGATGTACTC
Statistics
Matches: 85, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
60 3 0.04
61 30 0.35
62 52 0.61
ACGTcount: A:0.18, C:0.22, G:0.18, T:0.42
Consensus pattern (60 bp):
CTCTTATGAGTTTCTGTTCAGCTCTACGAGTTCTGTTAAACTCTACGAGCTTCTGTTCAA
Found at i:91470380 original size:21 final size:21
Alignment explanation
Indices: 91470241--91470398 Score: 151
Period size: 21 Copynumber: 7.6 Consensus size: 21
91470231 CGTGTTTTAC
* *
91470241 TTTCTATTTAGCTCTTATGAG
1 TTTCTGTTCAGCTCTTATGAG
* *
91470262 CTTT-TGTTCAACTCATATGAG
1 -TTTCTGTTCAGCTCTTATGAG
*
91470283 TTTCTGTTCAGCTC-TACGAG
1 TTTCTGTTCAGCTCTTATGAG
* * *
91470303 CTTCTGTTGAACTCTTATGAG
1 TTTCTGTTCAGCTCTTATGAG
*
91470324 TTTCTGTTCAGCTC-TACGAG
1 TTTCTGTTCAGCTCTTATGAG
* * *
91470344 CTTCTGTTAAACTCTTATGAG
1 TTTCTGTTCAGCTCTTATGAG
*
91470365 TTTCTGTTCAGCTCTTACGAG
1 TTTCTGTTCAGCTCTTATGAG
**
91470386 CCTCTGTTCAGCT
1 TTTCTGTTCAGCT
91470399 TTCGAGTTCT
Statistics
Matches: 109, Mismatches: 24, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
20 35 0.32
21 71 0.65
22 3 0.03
ACGTcount: A:0.18, C:0.22, G:0.17, T:0.43
Consensus pattern (21 bp):
TTTCTGTTCAGCTCTTATGAG
Found at i:91474070 original size:5 final size:5
Alignment explanation
Indices: 91474060--91474091 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
91474050 TGTATTGTGA
91474060 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
91474092 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:91474085 original size:9 final size:9
Alignment explanation
Indices: 91474061--91474091 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
91474051 GTATTGTGAA
91474061 AAATAAAAT
1 AAATAAAAT
91474070 AAAATAAAAT
1 -AAATAAAAT
91474080 AAATAAAAT
1 AAATAAAAT
91474089 AAA
1 AAA
91474092 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:91478518 original size:5 final size:5
Alignment explanation
Indices: 91478508--91478540 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
91478498 CAATTTGTGA
91478508 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
91478541 GAACACACAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:91480722 original size:14 final size:14
Alignment explanation
Indices: 91480705--91480738 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
91480695 GTTATCTTGT
*
91480705 TTATTTTATTATTA
1 TTATTATATTATTA
*
91480719 TTATTATATTATTG
1 TTATTATATTATTA
91480733 TTATTA
1 TTATTA
91480739 CAACACCCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (14 bp):
TTATTATATTATTA
Found at i:91480725 original size:17 final size:17
Alignment explanation
Indices: 91480705--91480738 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
91480695 GTTATCTTGT
*
91480705 TTATTTTATTATTATTA
1 TTATATTATTATTATTA
*
91480722 TTATATTATTGTTATTA
1 TTATATTATTATTATTA
91480739 CAACACCCCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (17 bp):
TTATATTATTATTATTA
Found at i:91484563 original size:23 final size:23
Alignment explanation
Indices: 91484537--91484580 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
91484527 TATTTTGAGC
91484537 ACTTTATTTTTTATGTTCTTTGA
1 ACTTTATTTTTTATGTTCTTTGA
* * *
91484560 ACTTTCTTTTTTTTTTTCTTT
1 ACTTTATTTTTTATGTTCTTT
91484581 ATTTTCTATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.11, C:0.11, G:0.05, T:0.73
Consensus pattern (23 bp):
ACTTTATTTTTTATGTTCTTTGA
Found at i:91485629 original size:18 final size:18
Alignment explanation
Indices: 91485601--91485646 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
91485591 AAACTACGTT
91485601 AAAAAATGAAGAAGAA-AG
1 AAAAAA-GAAGAAGAAGAG
*
91485619 AAAAACAGAAGGAGAAGAG
1 AAAAA-AGAAGAAGAAGAG
91485638 AAAAAAGAA
1 AAAAAAGAA
91485647 ATTTTAAAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 17 0.68
19 8 0.32
ACGTcount: A:0.72, C:0.02, G:0.24, T:0.02
Consensus pattern (18 bp):
AAAAAAGAAGAAGAAGAG
Found at i:91485999 original size:23 final size:23
Alignment explanation
Indices: 91485973--91486037 Score: 60
Period size: 26 Copynumber: 2.7 Consensus size: 23
91485963 ATTATTTAAA
91485973 ATTTTTTAAATAATTT-AATGAAT
1 ATTTTTTAAATAATTTAAAT-AAT
* *
91485996 ATTTGTAATTCAATTATTTAAATAAT
1 ATTT-T--TTAAATAATTTAAATAAT
*
91486022 ATTTTTTGAATAATTT
1 ATTTTTTAAATAATTT
91486038 TTTCATCATT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
23 13 0.38
24 1 0.03
25 1 0.03
26 16 0.47
27 3 0.09
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.54
Consensus pattern (23 bp):
ATTTTTTAAATAATTTAAATAAT
Found at i:91488473 original size:40 final size:40
Alignment explanation
Indices: 91488418--91488498 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
91488408 AGCCTGAGAG
91488418 TCTACGTTAATTTAATTTCTAATATGAATTGTAAAACGAA
1 TCTACGTTAATTTAATTTCTAATATGAATTGTAAAACGAA
91488458 TCTACGTTAATTTAATTTCTAATATGAATTGTAAAACGAA
1 TCTACGTTAATTTAATTTCTAATATGAATTGTAAAACGAA
91488498 T
1 T
91488499 ATAAAATTCG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.41
Consensus pattern (40 bp):
TCTACGTTAATTTAATTTCTAATATGAATTGTAAAACGAA
Found at i:91494923 original size:12 final size:12
Alignment explanation
Indices: 91494905--91494934 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
91494895 TTATAAATAA
91494905 AATAAAAAATTT
1 AATAAAAAATTT
91494917 -ATAAAAAATTT
1 AATAAAAAATTT
91494928 AATAAAA
1 AATAAAA
91494935 CTCTTAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (12 bp):
AATAAAAAATTT
Found at i:91495638 original size:19 final size:18
Alignment explanation
Indices: 91495601--91495643 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
91495591 TAAGTACTTG
* *
91495601 AATTTGGTTTTAAATTTT
1 AATTTGGTCTTAAAGTTT
91495619 AATTTGGTACTTAAAGTTT
1 AATTTGGT-CTTAAAGTTT
*
91495638 ATTTTG
1 AATTTG
91495644 ATCTAATTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.28, C:0.02, G:0.14, T:0.56
Consensus pattern (18 bp):
AATTTGGTCTTAAAGTTT
Done.