Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 286 of 290
Found at i:91498801 original size:5 final size:5
Alignment explanation
Indices: 91498788--91498899 Score: 215
Period size: 5 Copynumber: 22.2 Consensus size: 5
91498778 TCCTTTAGTT
91498788 TATATA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATA-A TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
91498839 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
91498889 TATAA TATAA T
1 TATAA TATAA T
91498900 TAAAACATAA
Statistics
Matches: 106, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
5 102 0.96
6 4 0.04
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:91500038 original size:20 final size:20
Alignment explanation
Indices: 91500013--91500050 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
91500003 GTTTAGTAAG
91500013 ATCTCCAATCACCAATATCT
1 ATCTCCAATCACCAATATCT
*
91500033 ATCTCCGATCACCAATAT
1 ATCTCCAATCACCAATAT
91500051 TTAGTACGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.34, G:0.03, T:0.29
Consensus pattern (20 bp):
ATCTCCAATCACCAATATCT
Found at i:91500164 original size:40 final size:40
Alignment explanation
Indices: 91500074--91500165 Score: 112
Period size: 40 Copynumber: 2.3 Consensus size: 40
91500064 AAACCGGCCA
*
91500074 GAAGCCTGCTAGGCATTAAACCCAATAATTACACCGACAT
1 GAAGCCTGCTAGGCATTAAACCCAATAATTACACCGACAC
** * ** * *
91500114 GAAGTTTGCTAGGCATTAAGCCTGATAATTACATCGGCAC
1 GAAGCCTGCTAGGCATTAAACCCAATAATTACACCGACAC
91500154 GAAGCCTGCTAG
1 GAAGCCTGCTAG
91500166 ACACAAGGCC
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.23
Consensus pattern (40 bp):
GAAGCCTGCTAGGCATTAAACCCAATAATTACACCGACAC
Found at i:91504593 original size:26 final size:25
Alignment explanation
Indices: 91504563--91504620 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
91504553 AAAATTTGTG
*
91504563 AAAAATAAAAAAATTAAGGAAAAATCT
1 AAAAA-AATAAAA-TAAGGAAAAATCT
*
91504590 AAAAAAATAAAATCAGGAAAAAT-T
1 AAAAAAATAAAATAAGGAAAAATCT
*
91504614 ATAAAAA
1 AAAAAAA
91504621 CTATACCTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 7 0.25
25 10 0.36
26 6 0.21
27 5 0.18
ACGTcount: A:0.72, C:0.03, G:0.07, T:0.17
Consensus pattern (25 bp):
AAAAAAATAAAATAAGGAAAAATCT
Found at i:91505893 original size:26 final size:26
Alignment explanation
Indices: 91505864--91505971 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
91505854 TGATACAAAT
91505864 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
91505890 TGATAATGGCTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
91505916 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
91505942 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
91505968 TGAT
1 TGAT
91505972 CAGAATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:91510515 original size:17 final size:19
Alignment explanation
Indices: 91510476--91510518 Score: 56
Period size: 17 Copynumber: 2.4 Consensus size: 19
91510466 AAAAAAAAAA
91510476 ATTA-TTTTAACATTTTAT
1 ATTATTTTTAACATTTTAT
*
91510494 TTTATTTTTAA-A-TTTAT
1 ATTATTTTTAACATTTTAT
91510511 ATTATTTT
1 ATTATTTT
91510519 AAAAATCACT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 12 0.55
18 4 0.18
19 6 0.27
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (19 bp):
ATTATTTTTAACATTTTAT
Found at i:91510524 original size:18 final size:18
Alignment explanation
Indices: 91510476--91510524 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 18
91510466 AAAAAAAAAA
* *
91510476 ATTATTTTAACATTTTAT
1 ATTATTTTAAAAATTTAT
* *
91510494 TTTATTTT-TAAATTTAT
1 ATTATTTTAAAAATTTAT
91510511 ATTATTTTAAAAAT
1 ATTATTTTAAAAAT
91510525 CACTTAAAAT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
17 13 0.54
18 11 0.46
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (18 bp):
ATTATTTTAAAAATTTAT
Found at i:91510613 original size:20 final size:19
Alignment explanation
Indices: 91510580--91510638 Score: 75
Period size: 20 Copynumber: 2.9 Consensus size: 19
91510570 ACATATAAAA
91510580 TTAAAAATTATAAAAATATTT
1 TTAAAAATT-TAAAAATA-TT
91510601 TTAAAAATTTAAAAATA-T
1 TTAAAAATTTAAAAATATT
91510619 TTAAAAAGTATTAAAAATAT
1 TTAAAAA-T-TTAAAAATAT
91510639 AATATATTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
18 8 0.23
19 1 0.03
20 17 0.49
21 9 0.26
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (19 bp):
TTAAAAATTTAAAAATATT
Found at i:91510974 original size:16 final size:16
Alignment explanation
Indices: 91510953--91511021 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
91510943 TTTGGTTCGC
91510953 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
91510969 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
91510985 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
91511002 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
91511018 TGTA
1 TGTA
91511022 ATAGCTAATC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:91510999 original size:33 final size:32
Alignment explanation
Indices: 91510953--91511021 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
91510943 TTTGGTTCGC
91510953 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
91510985 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGTGTATTGGATTAGAGG
91511018 TGTA
1 TGTA
91511022 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 6 0.17
33 30 0.83
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGATTAGAGG
Found at i:91511086 original size:44 final size:45
Alignment explanation
Indices: 91511002--91511092 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
91510992 GGATTAGAGG
* * *
91511002 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
91511047 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
91511091 TG
1 TG
91511093 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:91511274 original size:16 final size:16
Alignment explanation
Indices: 91511237--91511291 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
91511227 TTAATCATAT
*
91511237 TTAAACATA-ATTATAA
1 TTAAA-ATATATTTTAA
91511253 TT-AAATATATTTTAA
1 TTAAAATATATTTTAA
91511268 TTAAAATATATAATTTAA
1 TTAAAATATAT--TTTAA
91511286 -TAAAAT
1 TTAAAAT
91511292 TCTTATAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 3 0.09
15 10 0.29
16 10 0.29
17 6 0.18
18 5 0.15
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
TTAAAATATATTTTAA
Found at i:91511284 original size:18 final size:18
Alignment explanation
Indices: 91511243--91511291 Score: 61
Period size: 16 Copynumber: 2.9 Consensus size: 18
91511233 ATATTTAAAC
91511243 ATAATTATAATT-AAATAT
1 ATAATT-TAATTAAAATAT
91511261 AT--TTTAATTAAAATAT
1 ATAATTTAATTAAAATAT
91511277 ATAATTTAA-TAAAAT
1 ATAATTTAATTAAAAT
91511292 TCTTATAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 5 0.18
16 10 0.36
17 6 0.21
18 7 0.25
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
ATAATTTAATTAAAATAT
Found at i:91511410 original size:67 final size:67
Alignment explanation
Indices: 91511339--91511551 Score: 172
Period size: 67 Copynumber: 3.1 Consensus size: 67
91511329 ATTGTTAATG
*
91511339 TTATTTAAATTTTAATAAGATTATTATTATCAGTAATAAATATCTTAATCATATTTAAACATAAT
1 TTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATATCTTAATCATATTTAAACATAAT
91511404 TA
66 TA
* * * * **
91511406 TTATTAAATATATTTTAATTAAAATATATAATT-T-AAT-A-AAAT-TCTT-ATAATTAGTAGAA
1 TTATT---TAAATTTTAA-TAAGAT-TATTATTATCAATAATAAATATCTTAATCA-TA-TTTAA
** * *
91511465 ATTTTTTATTG
59 A--CATAATTA
*
91511476 TTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAAT-TTAATCATATTTAAACATAA
1 TTATTTAAATTTTAATAAGATTATTATTATCAATAATAAAT-ATCTTAATCATATTTAAACATAA
91511540 TTA
65 TTA
91511543 TTA-TTAAAT
1 TTATTTAAAT
91511552 ACATTATAAT
Statistics
Matches: 108, Mismatches: 22, Indels: 33
0.66 0.13 0.20
Matches are distributed among these distances:
65 5 0.05
66 15 0.14
67 30 0.28
68 9 0.08
69 9 0.08
70 24 0.22
71 10 0.09
72 6 0.06
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.47
Consensus pattern (67 bp):
TTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATATCTTAATCATATTTAAACATAAT
TA
Found at i:91511428 original size:156 final size:156
Alignment explanation
Indices: 91511144--91511465 Score: 599
Period size: 156 Copynumber: 2.1 Consensus size: 156
91511134 TAGAATACCC
* *
91511144 TTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
*
91511209 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATCTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
91511274 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
91511300 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
*
91511365 TTATCAGTAATAAATATCTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATCTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
91511430 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
*
91511456 TTAGTAGAAA
1 TTAGCAGAAA
91511466 TTTTTTATTG
Statistics
Matches: 161, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
156 161 1.00
ACGTcount: A:0.44, C:0.03, G:0.07, T:0.46
Consensus pattern (156 bp):
TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
TTATCAGTAATAAATATCTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
TATATAATTTAATAAAATTCTTATAA
Found at i:91511434 original size:18 final size:17
Alignment explanation
Indices: 91511413--91511447 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
91511403 TTATTATTAA
*
91511413 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
91511431 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
91511448 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:91511587 original size:137 final size:138
Alignment explanation
Indices: 91511337--91511595 Score: 423
Period size: 137 Copynumber: 1.9 Consensus size: 138
91511327 TTATTGTTAA
* *
91511337 TGTTATTTAAATTTTAATAAGATTATTATTATCAGTAATAAATATCTTAATCATATTTAAACATA
1 TGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATATCTTAATCATATTTAAACATA
* *
91511402 ATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTT-ATAATTAGTAGAAA
66 ATTATTATTAAATACATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGTAGAAA
91511466 TTTTTTAT
131 TTTTTTAT
91511474 TGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAAT-TTAATCATATTTAAACAT
1 TGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAAT-ATCTTAATCATATTTAAACAT
****
91511538 AATTATTATTAAATACATTATAATTTTGGTATATAATTTAATAAAATTCTTAATAATT
65 AATTATTATTAAATACATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATT
91511596 CATATTCTTA
Statistics
Matches: 112, Mismatches: 8, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
137 104 0.93
138 8 0.07
ACGTcount: A:0.45, C:0.04, G:0.03, T:0.47
Consensus pattern (138 bp):
TGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATATCTTAATCATATTTAAACATA
ATTATTATTAAATACATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGTAGAAA
TTTTTTAT
Found at i:91511629 original size:137 final size:137
Alignment explanation
Indices: 91511351--91511629 Score: 332
Period size: 137 Copynumber: 2.0 Consensus size: 137
91511341 ATTTAAATTT
* *
91511351 TAATAAGATTATTATTATCAGTAATAAATATCTTAATCATATTTAAACATAATTATTATTAAATA
1 TAATAAGATTATTAATATCAATAATAAATATCTTAATCATATTTAAACATAATTATTATTAAATA
* * * * * *
91511416 TATTTTAATTAAAATATATAATTTAATAAAATTCTTATAATTAGTAGAAATTTTTTATTGTTATT
66 CATTATAATTAAAATATATAATTTAATAAAATTCTTATAATTAGTAGAAATTTATGAATGTTACT
* **
91511481 TAAATTT
131 CAAATCA
91511488 TAATAAGATTATTAATATCAATAATAAATAAT-TTAATCATATTTAAACATAATTATTATTAAAT
1 TAATAAGATTATTAATATCAATAATAAAT-ATCTTAATCATATTTAAACATAATTATTATTAAAT
**** ***
91511552 ACATTATAATTTTGGTATATAATTTAATAAAATTCTTAATAATTCA-TA-TTCTTATATGAAT-T
65 ACATTATAATTAAAATATATAATTTAATAAAATTCTT-ATAATT-AGTAGAAATT-TATGAATGT
91511614 TACTCAAATCA
127 TACTCAAATCA
91511625 TAATA
1 TAATA
91511630 TAATGAAGAT
Statistics
Matches: 120, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
137 105 0.88
138 14 0.12
139 1 0.01
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (137 bp):
TAATAAGATTATTAATATCAATAATAAATATCTTAATCATATTTAAACATAATTATTATTAAATA
CATTATAATTAAAATATATAATTTAATAAAATTCTTATAATTAGTAGAAATTTATGAATGTTACT
CAAATCA
Found at i:91515013 original size:145 final size:145
Alignment explanation
Indices: 91514816--91515127 Score: 561
Period size: 145 Copynumber: 2.2 Consensus size: 145
91514806 ACATTAACAA
*
91514816 TGAATATTTGTTTTCTAATCAACAATGTTACCAAATACTTGTTTTTTAATCAAGTTATTTTTTAA
1 TGAATATTTGTTTTCTAATCAACAATGTTACCAAATACTTGGTTTTTAATCAAGTTATTTTTTAA
* *
91514881 TCAATCATAATAACAATGAATATTTGTTTTTTAATCAAGTTGTTTAATTGATTATATCTAATGAT
66 TCAATCATAATAACAAAGAATATTTATTTTTTAATCAAGTTGTTTAATTGATTATATCTAATGAT
91514946 CCAATTTGAATATAT
131 CCAATTTGAATATAT
*
91514961 TGAATATTTGTTTTCTAATCAACAATGTTACCAAATACTTGGTTTTTAATCAAGTTGTTTTTTAA
1 TGAATATTTGTTTTCTAATCAACAATGTTACCAAATACTTGGTTTTTAATCAAGTTATTTTTTAA
*
91515026 TCAATCATAATAACAAAGAATATTTATTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGAT
66 TCAATCATAATAACAAAGAATATTTATTTTTTAATCAAGTTGTTTAATTGATTATATCTAATGAT
*
91515091 CCAATTTTAATATAT
131 CCAATTTGAATATAT
*
91515106 TGAATATTTGTTTTTTAATCAA
1 TGAATATTTGTTTTCTAATCAA
91515128 GTTGTTTACT
Statistics
Matches: 160, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
145 160 1.00
ACGTcount: A:0.35, C:0.10, G:0.08, T:0.47
Consensus pattern (145 bp):
TGAATATTTGTTTTCTAATCAACAATGTTACCAAATACTTGGTTTTTAATCAAGTTATTTTTTAA
TCAATCATAATAACAAAGAATATTTATTTTTTAATCAAGTTGTTTAATTGATTATATCTAATGAT
CCAATTTGAATATAT
Found at i:91515135 original size:64 final size:64
Alignment explanation
Indices: 91515043--91515167 Score: 223
Period size: 64 Copynumber: 2.0 Consensus size: 64
91515033 TAATAACAAA
*
91515043 GAATATTTATTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCCAATTTTAATATATT
1 GAATATTTATTTTTTAATCAAGTTGTTTACTTGATTATACCTAATGATCCAATTTTAATATATT
* *
91515107 GAATATTTGTTTTTTAATCAAGTTGTTTACTTGATTATACCTAATGATCCAATTTTTATAT
1 GAATATTTATTTTTTAATCAAGTTGTTTACTTGATTATACCTAATGATCCAATTTTAATAT
91515168 GAATTTACTC
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 58 1.00
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.51
Consensus pattern (64 bp):
GAATATTTATTTTTTAATCAAGTTGTTTACTTGATTATACCTAATGATCCAATTTTAATATATT
Found at i:91519915 original size:14 final size:14
Alignment explanation
Indices: 91519864--91519914 Score: 59
Period size: 15 Copynumber: 3.6 Consensus size: 14
91519854 GGAGCAACCG
*
91519864 ATTTTTTTAATATTA
1 ATTTTTTTATTA-TA
*
91519879 ATTTTTTTATTTAAA
1 ATTTTTTTA-TTATA
91519894 ATTTTTTTATTAT-
1 ATTTTTTTATTATA
91519907 ATTTTTTT
1 ATTTTTTT
91519915 TTCGAGTTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
13 8 0.25
14 3 0.09
15 19 0.59
16 2 0.06
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (14 bp):
ATTTTTTTATTATA
Found at i:91523681 original size:33 final size:33
Alignment explanation
Indices: 91523617--91523693 Score: 84
Period size: 33 Copynumber: 2.3 Consensus size: 33
91523607 AAGCCGAGAG
* * * *
91523617 GAGTAGAATATGGCGGTGGATATGGGCCTGGAA
1 GAGTAGAGTACGGCGGTGGATATCGACCTGGAA
*
91523650 GAGTAGAGTACGGCGGTGGATA-CGACTCTGGAG
1 GAGTAGAGTACGGCGGTGGATATCGAC-CTGGAA
*
91523683 GAGTTGAGTAC
1 GAGTAGAGTAC
91523694 ATGAGTGGAT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
32 2 0.05
33 35 0.95
ACGTcount: A:0.26, C:0.12, G:0.42, T:0.21
Consensus pattern (33 bp):
GAGTAGAGTACGGCGGTGGATATCGACCTGGAA
Found at i:91525790 original size:16 final size:16
Alignment explanation
Indices: 91525771--91525812 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
91525761 AAAATATCAA
91525771 AAAAATATA-ATAATAT
1 AAAAAT-TACATAATAT
*
91525787 -AAAATTACATTATAT
1 AAAAATTACATAATAT
91525802 AAAAATTACAT
1 AAAAATTACAT
91525813 TAAAAAATCA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (16 bp):
AAAAATTACATAATAT
Found at i:91525801 original size:15 final size:16
Alignment explanation
Indices: 91525783--91525814 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
91525773 AAATATAATA
91525783 ATAT-AAAATTACATT
1 ATATAAAAATTACATT
91525798 ATATAAAAATTACATT
1 ATATAAAAATTACATT
91525814 A
1 A
91525815 AAAAATCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAAAAATTACATT
Found at i:91526021 original size:114 final size:113
Alignment explanation
Indices: 91525880--91526287 Score: 687
Period size: 114 Copynumber: 3.6 Consensus size: 113
91525870 ACAAAATAAA
* *
91525880 TATAAAATTATTTTTTT-AAATACATTACTAAAAAAATCACAATACACTAATTCACACTAAACCA
1 TATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAA-T-ACACTAAACCA
91525944 CTAAACACTAACAA-TATATAACCTAATCTTAAATTACTAATAAAATAGC
64 CTAAACACTAACAATTATATAACCTAATCTTAAATTACTAATAAAATAGC
*
91525993 TATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACGCTAAACCACT
1 TATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACCACT
91526058 AAACACTAACAATTTATATAACCTAATCTTAAATTACTAATAAAATAGC
66 AAACACTAACAA-TTATATAACCTAATCTTAAATTACTAATAAAATAGC
*
91526107 TATAAAAATATTTTTTTAAAATATATTACTAAAAAAATTACAATACACTAATACACTAAACCACT
1 TATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACCACT
91526172 AAACACTAACAATTTATATAACCTAATCTTAAATTACTAATAAAATAGC
66 AAACACTAACAA-TTATATAACCTAATCTTAAATTACTAATAAAATAGC
* * *
91526221 TCTAAAATTATTTTTTTAATATATTATTACTAAAAAAATCACAATACACTAATACACTAAA-CAC
1 TATAAAAATATTTTTTTAAAATA-TATTACTAAAAAAATCACAATACACTAATACACTAAACCAC
91526285 TAA
65 TAA
91526288 CAATTTGTAA
Statistics
Matches: 282, Mismatches: 9, Indels: 7
0.95 0.03 0.02
Matches are distributed among these distances:
112 24 0.09
113 17 0.06
114 205 0.73
115 36 0.13
ACGTcount: A:0.51, C:0.16, G:0.01, T:0.32
Consensus pattern (113 bp):
TATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACCACT
AAACACTAACAATTATATAACCTAATCTTAAATTACTAATAAAATAGC
Found at i:91526516 original size:12 final size:13
Alignment explanation
Indices: 91526486--91526517 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
91526476 TTACCCTTTT
91526486 TTCTT-CTTCTTC
1 TTCTTCCTTCTTC
91526498 TTCTTCCTTCTTC
1 TTCTTCCTTCTTC
91526511 -TCTTCCT
1 TTCTTCCT
91526518 CCTTTCTCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 12 0.63
13 7 0.37
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (13 bp):
TTCTTCCTTCTTC
Found at i:91527385 original size:16 final size:16
Alignment explanation
Indices: 91527360--91527408 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
91527350 ACCCTATTAC
*
91527360 TTTTTCTTTTTTTTTT
1 TTTTTGTTTTTTTTTT
**
91527376 TTTTTGTTTTTTTTAA
1 TTTTTGTTTTTTTTTT
*
91527392 CTTTTGTCTTTTTTTTT
1 TTTTTGT-TTTTTTTTT
91527409 ACTTTTTTTA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
16 19 0.73
17 7 0.27
ACGTcount: A:0.04, C:0.06, G:0.04, T:0.86
Consensus pattern (16 bp):
TTTTTGTTTTTTTTTT
Found at i:91527396 original size:18 final size:18
Alignment explanation
Indices: 91527360--91527416 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 18
91527350 ACCCTATTAC
*
91527360 TTTTTCTTTTTTTT--TT
1 TTTTTCTTTTTTTTAACT
*
91527376 TTTTTGTTTTTTTTAACT
1 TTTTTCTTTTTTTTAACT
* *
91527394 TTTGTCTTTTTTTTTACT
1 TTTTTCTTTTTTTTAACT
91527412 TTTTT
1 TTTTT
91527417 TAACTATTGT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
16 13 0.39
18 20 0.61
ACGTcount: A:0.05, C:0.07, G:0.04, T:0.84
Consensus pattern (18 bp):
TTTTTCTTTTTTTTAACT
Found at i:91527414 original size:29 final size:28
Alignment explanation
Indices: 91527372--91527430 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
91527362 TTTCTTTTTT
** *
91527372 TTTTTTTTTGTTTTTTTTAACTTTTGTC
1 TTTTTTTTTACTTTTTTTAACTATTGTC
91527400 TTTTTTTTTACTTTTTTTAACTATTGTC
1 TTTTTTTTTACTTTTTTTAACTATTGTC
91527428 TTT
1 TTT
91527431 ATCCTTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.10, C:0.08, G:0.05, T:0.76
Consensus pattern (28 bp):
TTTTTTTTTACTTTTTTTAACTATTGTC
Found at i:91527445 original size:28 final size:28
Alignment explanation
Indices: 91527383--91527446 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
91527373 TTTTTTTTGT
* * **
91527383 TTTTTTTAACTTTTGTCTTTTTTTTTAC
1 TTTTTTTAACTATTGTCTTTATCCTTAC
91527411 TTTTTTTAACTATTGTCTTTATCCTTA-
1 TTTTTTTAACTATTGTCTTTATCCTTAC
91527438 TTTATTTTA
1 TTT-TTTTA
91527447 TTTATTATTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 3 0.10
28 28 0.90
ACGTcount: A:0.16, C:0.11, G:0.03, T:0.70
Consensus pattern (28 bp):
TTTTTTTAACTATTGTCTTTATCCTTAC
Found at i:91527532 original size:33 final size:32
Alignment explanation
Indices: 91527495--91527557 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
91527485 TTATAATATA
* *
91527495 TATTTTTTAAAATTTTAAATATATATTTGAAAT
1 TATTTTTTAAAATATTAAATAAAT-TTTGAAAT
*
91527528 TATTTTTTTAAATATTAAATAAATTTTGAA
1 TATTTTTTAAAATATTAAATAAATTTTGAA
91527558 TAATATAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 6 0.22
33 21 0.78
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (32 bp):
TATTTTTTAAAATATTAAATAAATTTTGAAAT
Found at i:91527690 original size:14 final size:15
Alignment explanation
Indices: 91527614--91527696 Score: 64
Period size: 14 Copynumber: 5.3 Consensus size: 15
91527604 ATTATTAGTT
91527614 TTATAATATTTTAAA
1 TTATAATATTTTAAA
91527629 -TAT-ATATTTTAAA
1 TTATAATATTTTAAA
* *
91527642 TTTTCAATATTTTTAATTTTT
1 TTAT-AATA-TTTTAA----A
91527663 TGTATAATATTTTAAA
1 T-TATAATATTTTAAA
91527679 TTATAATA-TTTAAA
1 TTATAATATTTTAAA
91527693 TTAT
1 TTAT
91527697 TTAAAATATA
Statistics
Matches: 55, Mismatches: 4, Indels: 19
0.71 0.05 0.24
Matches are distributed among these distances:
13 10 0.18
14 15 0.27
15 7 0.13
16 4 0.07
17 6 0.11
20 6 0.11
21 5 0.09
22 2 0.04
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.58
Consensus pattern (15 bp):
TTATAATATTTTAAA
Found at i:91527787 original size:12 final size:13
Alignment explanation
Indices: 91527770--91527819 Score: 50
Period size: 12 Copynumber: 3.7 Consensus size: 13
91527760 ATATATTTAA
91527770 AATTTTAAATA-T
1 AATTTTAAATATT
91527782 AATTTTTATAAATTATT
1 AA--TTT-TAAA-TATT
91527799 AATTTTAAA-ATT
1 AATTTTAAATATT
91527811 AATTTTAAA
1 AATTTTAAA
91527820 GATATTCAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
12 14 0.42
14 7 0.21
15 7 0.21
16 2 0.06
17 3 0.09
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
AATTTTAAATATT
Found at i:91531541 original size:18 final size:17
Alignment explanation
Indices: 91531497--91531534 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
91531487 CAAAAATGAT
91531497 AAAAAAA-AA-TT-AAA
1 AAAAAAACAATTTGAAA
91531511 AAAAAAACAATTTGAAA
1 AAAAAAACAATTTGAAA
91531528 AAAAAAA
1 AAAAAAA
91531535 GATATTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 2 0.10
16 2 0.10
17 10 0.48
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.13
Consensus pattern (17 bp):
AAAAAAACAATTTGAAA
Found at i:91531651 original size:27 final size:29
Alignment explanation
Indices: 91531590--91531651 Score: 67
Period size: 27 Copynumber: 2.2 Consensus size: 29
91531580 AAAATAATAA
*
91531590 AAATATATTATATGATATAATAGCTTAAT
1 AAATATATTATATGAAATAATAGCTTAAT
* *
91531619 ATATAT-TTATAT-AAATAATA-CTATATT
1 AAATATATTATATGAAATAATAGCT-TAAT
91531646 AAATAT
1 AAATAT
91531652 GTGTGAAACC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 2 0.07
27 15 0.54
28 6 0.21
29 5 0.18
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (29 bp):
AAATATATTATATGAAATAATAGCTTAAT
Found at i:91531708 original size:19 final size:21
Alignment explanation
Indices: 91531681--91531732 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
91531671 ATTCTAGAAC
*
91531681 TTTATATAATA-TGCTA-ATTA
1 TTTA-ATAATATTGATATATTA
91531701 TTTAATAATGATTGATATATTA
1 TTTAATAAT-ATTGATATATTA
91531723 TTTAATAATA
1 TTTAATAATA
91531733 ATTTAAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 5 0.18
20 5 0.18
21 5 0.18
22 13 0.46
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (21 bp):
TTTAATAATATTGATATATTA
Found at i:91531785 original size:7 final size:7
Alignment explanation
Indices: 91531763--91531900 Score: 52
Period size: 7 Copynumber: 20.6 Consensus size: 7
91531753 TACACCATTA
91531763 AATA-AT
1 AATATAT
91531769 AATAATAT
1 AAT-ATAT
91531777 AATATAT
1 AATATAT
*
91531784 AATTTAT
1 AATATAT
91531791 AATA-A-
1 AATATAT
91531796 AATA-A-
1 AATATAT
91531801 AA-ATAT
1 AATATAT
*
91531807 AAGGA-AT
1 AA-TATAT
91531814 AATATAT
1 AATATAT
*
91531821 -ATAGTAA
1 AATA-TAT
91531828 AATATAT
1 AATATAT
*
91531835 AATGTAT
1 AATATAT
91531842 AATA-A-
1 AATATAT
91531847 AACT-TAT
1 AA-TATAT
*
91531854 AA-ATAA
1 AATATAT
*
91531860 AATGTAT
1 AATATAT
91531867 AATA-AT
1 AATATAT
91531873 AATATA-
1 AATATAT
91531879 ACATAATGAAT
1 A-AT-AT--AT
91531890 AATATAT
1 AATATAT
91531897 AATA
1 AATA
91531901 AAAAATAATA
Statistics
Matches: 101, Mismatches: 11, Indels: 39
0.67 0.07 0.26
Matches are distributed among these distances:
4 1 0.01
5 10 0.10
6 24 0.24
7 49 0.49
8 11 0.11
9 2 0.02
10 3 0.03
11 1 0.01
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.34
Consensus pattern (7 bp):
AATATAT
Found at i:91531819 original size:28 final size:28
Alignment explanation
Indices: 91531792--91531845 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 28
91531782 ATAATTTATA
91531792 ATAAAATAAAA-ATATAAGGAATAATAT
1 ATAAAATAAAATATATAAGGAATAATAT
* * * *
91531819 ATATAGTAAAATATATAATGTATAATA
1 ATAAAATAAAATATATAAGGAATAATA
91531846 AAACTTATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
27 9 0.41
28 13 0.59
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.31
Consensus pattern (28 bp):
ATAAAATAAAATATATAAGGAATAATAT
Found at i:91531901 original size:17 final size:17
Alignment explanation
Indices: 91531865--91531914 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
91531855 AATAAAATGT
91531865 ATAATAATAATATA-AC
1 ATAATAATAATATATAC
91531881 ATAATGAATAATATATA-
1 ATAAT-AATAATATATAC
*
91531898 ATAAAAAATAATATATA
1 AT-AATAATAATATATA
91531915 TACTATTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
16 5 0.17
17 22 0.73
18 3 0.10
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (17 bp):
ATAATAATAATATATAC
Found at i:91531964 original size:42 final size:40
Alignment explanation
Indices: 91531887--91531964 Score: 95
Period size: 42 Copynumber: 1.9 Consensus size: 40
91531877 TAACATAATG
* *
91531887 AATAATATATAATAAAAAATAATATATATACTATTTTATA
1 AATAATATATAATAAAAAATAATACACATACTATTTTATA
*
91531927 AATAATATTTATAA-AAATAAATAATACACATAGTATTT
1 AATAATA--TATAATAAA-AAATAATACACATACTATTT
91531965 AAATAAAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 7 0.22
41 3 0.09
42 22 0.69
ACGTcount: A:0.56, C:0.04, G:0.01, T:0.38
Consensus pattern (40 bp):
AATAATATATAATAAAAAATAATACACATACTATTTTATA
Found at i:91533950 original size:30 final size:30
Alignment explanation
Indices: 91533909--91533980 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 30
91533899 GTTGCTCTGG
* * * *
91533909 GTGAAATGAACTCGAACCGCCCATGTCCAA
1 GTGATATGAACTCGAACCACCAATATCCAA
* * *
91533939 GTGATATGAACTTGAGCCACCAATATCCTA
1 GTGATATGAACTCGAACCACCAATATCCAA
91533969 GTGATATGAACT
1 GTGATATGAACT
91533981 ACTCTGCAAC
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (30 bp):
GTGATATGAACTCGAACCACCAATATCCAA
Found at i:91535849 original size:22 final size:25
Alignment explanation
Indices: 91535815--91535859 Score: 60
Period size: 23 Copynumber: 1.9 Consensus size: 25
91535805 AAAAGTAACC
*
91535815 TAAAAAATTTAAT-ATAT-TTAAAT
1 TAAAAAATGTAATAATATATTAAAT
91535838 TAAAAAA-GTAATAATATATTAA
1 TAAAAAATGTAATAATATATTAA
91535860 TATATATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 4 0.21
23 11 0.58
24 4 0.21
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (25 bp):
TAAAAAATGTAATAATATATTAAAT
Found at i:91535924 original size:17 final size:17
Alignment explanation
Indices: 91535902--91535966 Score: 71
Period size: 17 Copynumber: 3.8 Consensus size: 17
91535892 CAACATTTTC
91535902 TTTT-AATATATTTAAA
1 TTTTAAATATATTTAAA
91535918 GTTTT-AATATATTTAAA
1 -TTTTAAATATATTTAAA
* *
91535935 TTTTTTAAATTTTTTTAAA
1 --TTTTAAATATATTTAAA
91535954 TTTTAAATATATT
1 TTTTAAATATATT
91535967 AAAAAATCTT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
17 27 0.66
18 4 0.10
19 10 0.24
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (17 bp):
TTTTAAATATATTTAAA
Found at i:91535950 original size:10 final size:10
Alignment explanation
Indices: 91535929--91535957 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
91535919 TTTTAATATA
91535929 TTTAAA-TTT
1 TTTAAATTTT
91535938 TTTAAATTTT
1 TTTAAATTTT
91535948 TTTAAATTTT
1 TTTAAATTTT
91535958 AAATATATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.32
10 13 0.68
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTAAATTTT
Found at i:91536099 original size:19 final size:18
Alignment explanation
Indices: 91536072--91536128 Score: 62
Period size: 19 Copynumber: 3.1 Consensus size: 18
91536062 TAAAATTTTT
**
91536072 TATACTTAATATTTTTTAA
1 TATA-TTAATATTTTAAAA
91536091 TATATTTAAT-TTTTAAAA
1 TATA-TTAATATTTTAAAA
91536109 TATATTAACTATTTTAAAA
1 TATATTAA-TATTTTAAAA
91536128 T
1 T
91536129 TTTAAAATTG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
17 4 0.12
18 11 0.33
19 18 0.55
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (18 bp):
TATATTAATATTTTAAAA
Found at i:91536103 original size:16 final size:17
Alignment explanation
Indices: 91536084--91536128 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
91536074 TACTTAATAT
*
91536084 TTTTTAATATAT-TTAA
1 TTTTTAAAATATATTAA
91536100 TTTTTAAAATATATTAA
1 TTTTTAAAATATATTAA
91536117 CTATTTTAAAAT
1 -T-TTTTAAAAT
91536129 TTTAAAATTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 11 0.44
17 4 0.16
18 1 0.04
19 9 0.36
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTTTAAAATATATTAA
Found at i:91536115 original size:60 final size:64
Alignment explanation
Indices: 91536047--91536196 Score: 164
Period size: 69 Copynumber: 2.3 Consensus size: 64
91536037 AAATATATTG
*
91536047 AATATATTAAAATTTTAAAA-TT-TT-TTATACTTAATATTTTTTAATATATTTAA-TTTTTAA
1 AATATATTAAAATTTTAAAATTTATTGTTATACTTAACATTTTTTAATATATTTAATTTTTTAA
*
91536107 AATATATTAACTATTTTAAAATTTTAAAATTGGTTATACTTAACATTTTTTAATATATTTAATTT
1 AATATATTAA-AATTTTAAAA-TTT---ATT-GTTATACTTAACATTTTTTAATATATTTAATTT
91536172 TTTAA
60 TTTAA
* * *
91536177 AAGTTTTTTAAAGTTTTAAA
1 AA-TATATTAAAATTTTAAA
91536197 TATATTAAAA
Statistics
Matches: 73, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
60 10 0.14
61 9 0.12
63 2 0.03
67 2 0.03
69 28 0.38
70 16 0.22
71 6 0.08
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (64 bp):
AATATATTAAAATTTTAAAATTTATTGTTATACTTAACATTTTTTAATATATTTAATTTTTTAA
Found at i:91536127 original size:69 final size:69
Alignment explanation
Indices: 91536029--91536178 Score: 230
Period size: 69 Copynumber: 2.1 Consensus size: 69
91536019 TTTAAAATAT
** *
91536029 ATTTTTAAAAATATATTGAATATATTAAAATTTTAAAATTTTTTATACTTAATATTTTTTAATAT
1 ATTTTT-AAAATATATTGAATATATTAAAATTTTAAAATTGGTTATACTTAACATTTTTTAATAT
91536094 ATTTA
65 ATTTA
*
91536099 ATTTTTAAAATATATT-AACTATTTTAAAATTTTAAAATTGGTTATACTTAACATTTTTTAATAT
1 ATTTTTAAAATATATTGAA-TATATTAAAATTTTAAAATTGGTTATACTTAACATTTTTTAATAT
91536163 ATTTA
65 ATTTA
91536168 ATTTTTTAAAA
1 A-TTTTTAAAA
91536179 GTTTTTTAAA
Statistics
Matches: 74, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
68 2 0.03
69 57 0.77
70 15 0.20
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (69 bp):
ATTTTTAAAATATATTGAATATATTAAAATTTTAAAATTGGTTATACTTAACATTTTTTAATATA
TTTA
Found at i:91536168 original size:19 final size:18
Alignment explanation
Indices: 91536060--91536176 Score: 61
Period size: 17 Copynumber: 6.8 Consensus size: 18
91536050 ATATTAAAAT
*
91536060 TTTAAAATTTTT--TATA
1 TTTAAATTTTTTAATATA
*
91536076 CTTAATATTTTTTAATATA
1 TTTAA-ATTTTTTAATATA
*
91536095 TTT-AA-TTTTTAAAATA
1 TTTAAATTTTTTAATATA
* * *
91536111 TATTAACTATTTTAAAAT-
1 T-TTAAATTTTTTAATATA
* **
91536129 TTTAAAATTGGT--TATA
1 TTTAAATTTTTTAATATA
*
91536145 CTTAACATTTTTTAATATA
1 TTTAA-ATTTTTTAATATA
91536164 TTT-AATTTTTTAA
1 TTTAAATTTTTTAA
91536177 AAGTTTTTTA
Statistics
Matches: 74, Mismatches: 17, Indels: 19
0.67 0.15 0.17
Matches are distributed among these distances:
15 2 0.03
16 19 0.26
17 28 0.38
18 4 0.05
19 21 0.28
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.56
Consensus pattern (18 bp):
TTTAAATTTTTTAATATA
Found at i:91536811 original size:20 final size:20
Alignment explanation
Indices: 91536780--91536835 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
91536770 TGATTACTTA
*
91536780 TAATATATATTTTTAATTTT
1 TAATATAAATTTTTAATTTT
* **
91536800 TAATTTAAATTTTTTCTTTT
1 TAATATAAATTTTTAATTTT
*
91536820 TAATATATATTTTTAA
1 TAATATAAATTTTTAA
91536836 ATAAATTTAT
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (20 bp):
TAATATAAATTTTTAATTTT
Found at i:91536868 original size:35 final size:37
Alignment explanation
Indices: 91536824--91536930 Score: 101
Period size: 35 Copynumber: 2.8 Consensus size: 37
91536814 TCTTTTTAAT
91536824 ATATATTTTTAAATAAATTTATTTTTTAA-TAAAT-AA
1 ATAT-TTTTTAAATAAATTTATTTTTTAATTAAATCAA
* * * *
91536860 ATATTTTTTTAACAAATATATTTTTTAATTAATTCAA
1 ATATTTTTTAAATAAATTTATTTTTTAATTAAATCAA
91536897 ATTTCACTTTTTTAAATAAAATATTATTTTTTAA
1 A--T-A-TTTTTTAAAT-AAAT-TTATTTTTTAA
91536931 CTTTTAAATA
Statistics
Matches: 56, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
35 21 0.38
36 8 0.14
37 3 0.05
39 1 0.02
40 1 0.02
41 8 0.14
42 4 0.07
43 10 0.18
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (37 bp):
ATATTTTTTAAATAAATTTATTTTTTAATTAAATCAA
Found at i:91536869 original size:19 final size:19
Alignment explanation
Indices: 91536833--91536885 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
91536823 TATATATTTT
*
91536833 TAAATAAATTTATTTTTTAA
1 TAAATAAATAT-TTTTTTAA
91536853 TAAATAAATATTTTTTTAA
1 TAAATAAATATTTTTTTAA
*
91536872 CAAAT--ATATTTTTT
1 TAAATAAATATTTTTT
91536886 AATTAATTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
17 9 0.29
19 12 0.39
20 10 0.32
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (19 bp):
TAAATAAATATTTTTTTAA
Found at i:91536883 original size:16 final size:16
Alignment explanation
Indices: 91536816--91536888 Score: 78
Period size: 16 Copynumber: 4.5 Consensus size: 16
91536806 AAATTTTTTC
91536816 TTTTTAAT--ATATAT
1 TTTTTAATAAATATAT
* *
91536830 TTTTAAATAAATTTAT
1 TTTTTAATAAATATAT
91536846 TTTTTAATAAATAAATATT
1 TTTTTAATAAAT--ATA-T
*
91536865 TTTTTAACAAATATAT
1 TTTTTAATAAATATAT
91536881 TTTTTAAT
1 TTTTTAAT
91536889 TAATTCAAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
14 7 0.15
16 24 0.50
17 3 0.06
18 2 0.04
19 12 0.25
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (16 bp):
TTTTTAATAAATATAT
Found at i:91536982 original size:11 final size:11
Alignment explanation
Indices: 91536966--91537027 Score: 60
Period size: 10 Copynumber: 5.6 Consensus size: 11
91536956 TTTGAATATC
91536966 TTTAAAAATAA
1 TTTAAAAATAA
91536977 TTTAAAAATTATAA
1 TTT-AAAA--ATAA
91536991 TTT-AAAAT-A
1 TTTAAAAATAA
91537000 -TTATAAAATAA
1 TTTA-AAAATAA
91537011 TTTAAAAAT-A
1 TTTAAAAATAA
91537021 TTTAAAA
1 TTTAAAA
91537028 TATTATAAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 15
0.75 0.00 0.25
Matches are distributed among these distances:
8 2 0.05
9 1 0.02
10 15 0.34
11 9 0.20
12 10 0.23
14 7 0.16
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
TTTAAAAATAA
Found at i:91536992 original size:14 final size:15
Alignment explanation
Indices: 91536973--91537005 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
91536963 ATCTTTAAAA
91536973 ATAATTTAAAA-ATT
1 ATAATTTAAAATATT
91536987 ATAATTTAAAATATT
1 ATAATTTAAAATATT
91537002 ATAA
1 ATAA
91537006 AATAATTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
ATAATTTAAAATATT
Found at i:91537008 original size:10 final size:9
Alignment explanation
Indices: 91536990--91537037 Score: 60
Period size: 10 Copynumber: 4.9 Consensus size: 9
91536980 AAAAATTATA
91536990 ATTTAAAAT
1 ATTTAAAAT
91536999 ATTATAAAAT
1 ATT-TAAAAT
91537009 AATTTAAAAAT
1 -ATTT-AAAAT
91537020 ATTTAAAAT
1 ATTTAAAAT
91537029 ATTATAAAA
1 ATT-TAAAA
91537038 CTAATAATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
9 11 0.31
10 16 0.46
11 8 0.23
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (9 bp):
ATTTAAAAT
Found at i:91537036 original size:20 final size:21
Alignment explanation
Indices: 91536987--91537037 Score: 72
Period size: 20 Copynumber: 2.5 Consensus size: 21
91536977 TTTAAAAATT
91536987 ATAATTT-AAAATATTATAAA
1 ATAATTTAAAAATATTATAAA
91537007 ATAATTTAAAAATATT-TAAA
1 ATAATTTAAAAATATTATAAA
91537027 AT-ATTATAAAA
1 ATAATT-TAAAA
91537038 CTAATAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
19 3 0.10
20 18 0.62
21 8 0.28
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
ATAATTTAAAAATATTATAAA
Found at i:91537045 original size:34 final size:33
Alignment explanation
Indices: 91536970--91537042 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 33
91536960 AATATCTTTA
91536970 AAAATAATTTAAAAATTATAATTTAAAATATTAT
1 AAAATAATTTAAAAA-TATAATTTAAAATATTAT
91537004 AAAATAATTT-AAAA-AT-ATTTAAAATATTAT
1 AAAATAATTTAAAAATATAATTTAAAATATTAT
91537034 AAAACTAAT
1 AAAA-TAAT
91537043 AATAAATTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
30 18 0.47
31 6 0.16
33 4 0.11
34 10 0.26
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.38
Consensus pattern (33 bp):
AAAATAATTTAAAAATATAATTTAAAATATTAT
Found at i:91537118 original size:21 final size:21
Alignment explanation
Indices: 91537094--91537163 Score: 115
Period size: 20 Copynumber: 3.3 Consensus size: 21
91537084 TTATATTATT
91537094 AAAATAATATTTAATATTTAA
1 AAAATAATATTTAATATTTAA
91537115 AAAAT-ATATTTAATATTTAA
1 AAAATAATATTTAATATTTAA
*
91537135 AAAATAATATTTAAAATTTTAA
1 AAAATAATATTTAATA-TTTAA
91537157 AAAATAA
1 AAAATAA
91537164 ATTCAAAATT
Statistics
Matches: 46, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
20 20 0.43
21 14 0.30
22 12 0.26
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
AAAATAATATTTAATATTTAA
Found at i:91537171 original size:21 final size:21
Alignment explanation
Indices: 91537094--91537173 Score: 92
Period size: 21 Copynumber: 3.8 Consensus size: 21
91537084 TTATATTATT
*
91537094 AAAATAATATTTAATA-TTTAA
1 AAAATAA-ATTTAAAATTTTAA
* *
91537115 AAAATATATTTAATA-TTTAA
1 AAAATAAATTTAAAATTTTAA
91537135 AAAATAATATTTAAAATTTTAA
1 AAAATAA-ATTTAAAATTTTAA
*
91537157 AAAATAAATTCAAAATT
1 AAAATAAATTTAAAATT
91537174 ATATATTTAA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
20 19 0.36
21 22 0.42
22 12 0.23
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (21 bp):
AAAATAAATTTAAAATTTTAA
Found at i:91537309 original size:25 final size:24
Alignment explanation
Indices: 91537276--91537326 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 24
91537266 AACAAAACTT
91537276 AGAAAAATGAAAAAAGAAAAAAAA
1 AGAAAAATGAAAAAAGAAAAAAAA
* **
91537300 AGAAAGAATGACAAAAGTTAAAAAA
1 AGAAA-AATGAAAAAAGAAAAAAAA
91537325 AG
1 AG
91537327 TAATAAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 5 0.22
25 18 0.78
ACGTcount: A:0.75, C:0.02, G:0.16, T:0.08
Consensus pattern (24 bp):
AGAAAAATGAAAAAAGAAAAAAAA
Found at i:91539234 original size:30 final size:29
Alignment explanation
Indices: 91539200--91539269 Score: 70
Period size: 29 Copynumber: 2.4 Consensus size: 29
91539190 AATATGTGCT
*
91539200 AGTGATTATATTGATCAGGTACTATGTATC
1 AGTGATTATATT-ATCAGGTACTATGTACC
** * *
91539230 AGTGACCATATTATTAGGTACTTTGTACC
1 AGTGATTATATTATCAGGTACTATGTACC
*
91539259 GGTG-TTATATT
1 AGTGATTATATT
91539270 TATGGTTCAT
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
28 5 0.16
29 17 0.53
30 10 0.31
ACGTcount: A:0.27, C:0.11, G:0.20, T:0.41
Consensus pattern (29 bp):
AGTGATTATATTATCAGGTACTATGTACC
Found at i:91543430 original size:17 final size:15
Alignment explanation
Indices: 91543408--91543441 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 15
91543398 AGATAAATTC
91543408 AATAAGGAAAATAAATA
1 AATAA-GAAAA-AAATA
91543425 AATAAGAAAAAAATA
1 AATAAGAAAAAAATA
91543440 AA
1 AA
91543442 AAATCACTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 5 0.29
17 5 0.29
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (15 bp):
AATAAGAAAAAAATA
Found at i:91545415 original size:20 final size:20
Alignment explanation
Indices: 91545374--91545415 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
91545364 ATATATACTA
**
91545374 ATAAAATAATAAAATATCAT
1 ATAAAATAATAAAATAAAAT
91545394 ATAAAA-AATAAAATTAAAAT
1 ATAAAATAATAAAA-TAAAAT
91545414 AT
1 AT
91545416 TAATAACTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (20 bp):
ATAAAATAATAAAATAAAAT
Found at i:91549036 original size:153 final size:153
Alignment explanation
Indices: 91548758--91549072 Score: 524
Period size: 153 Copynumber: 2.1 Consensus size: 153
91548748 GTAAAAGAAT
91548758 CAAAATGAAAATTTGGTACAAATACTTAGAAAGGTTATTATGTTGTCTCCAAATCCAATTGGAGA
1 CAAAATGAAAATTTGGTACAAATACTTAGAAAGGTTATTATGTTGTCTCCAAATCCAATTGGAGA
* * *
91548823 GATGACTAGTCTTGGCTATTGGAGCAGTTGACTCCACGAGTAGATATATAGATGTATTCATTGGA
66 GATAACTAGTCTTGGCTATCGGAGCAGTTGACTCCACGAGTAGAAATATAGATGTATTCATTGGA
91548888 AGAATTATACTTTGGACTGGACC
131 AGAATTATACTTTGGACTGGACC
* * *
91548911 CAAAATGAACATTTGGTTCAAATACTTAGAAAGGTTATTATGTCT-TCTCCAAATCCAATTGGGG
1 CAAAATGAAAATTTGGTACAAATACTTAGAAAGGTTATTATGT-TGTCTCCAAATCCAATTGGAG
* * *
91548975 AGATAACTAGTCTTGGTTATCGGAGCAGTTGACTTCACGGGTAGAAATATAGATGTATTCATTGG
65 AGATAACTAGTCTTGGCTATCGGAGCAGTTGACTCCACGAGTAGAAATATAGATGTATTCATTGG
91549040 AAGAATTATACTTTGGACTGGACC
130 AAGAATTATACTTTGGACTGGACC
*
91549064 CAAGATGAA
1 CAAAATGAA
91549073 TTAATTCTTC
Statistics
Matches: 151, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
153 150 0.99
154 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (153 bp):
CAAAATGAAAATTTGGTACAAATACTTAGAAAGGTTATTATGTTGTCTCCAAATCCAATTGGAGA
GATAACTAGTCTTGGCTATCGGAGCAGTTGACTCCACGAGTAGAAATATAGATGTATTCATTGGA
AGAATTATACTTTGGACTGGACC
Found at i:91551073 original size:30 final size:31
Alignment explanation
Indices: 91551023--91551089 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
91551013 GGTTTCATTT
*
91551023 CAGTCACTCAACTTTCG-AAAAGTTACAAAA
1 CAGTCACTCAACTTTCGAAAAAGTGACAAAA
91551053 CAGTCACT-AACATTAT-GAAAAAGTGACAAAA
1 CAGTCACTCAAC-TT-TCGAAAAAGTGACAAAA
*
91551084 TAGTCA
1 CAGTCA
91551090 TTGATTAACA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
29 3 0.09
30 11 0.34
31 18 0.56
ACGTcount: A:0.46, C:0.19, G:0.12, T:0.22
Consensus pattern (31 bp):
CAGTCACTCAACTTTCGAAAAAGTGACAAAA
Found at i:91551155 original size:21 final size:21
Alignment explanation
Indices: 91551125--91551165 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
91551115 TAACGGGAGT
91551125 GCTGACGTGGCAAGTTAACTA
1 GCTGACGTGGCAAGTTAACTA
* *
91551146 GCTGATGTGGCCAGTTAACT
1 GCTGACGTGGCAAGTTAACT
91551166 TGCCATGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (21 bp):
GCTGACGTGGCAAGTTAACTA
Found at i:91552329 original size:30 final size:30
Alignment explanation
Indices: 91552295--91552351 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
91552285 ATATCACTCT
*
91552295 CCTTCCATTTTC-TCTTATTCTTCTTCTCCC
1 CCTT-CATTTTCTTATTATTCTTCTTCTCCC
*
91552325 CCTTCTTTTTCTTATTATTCTTCTTCT
1 CCTTCATTTTCTTATTATTCTTCTTCT
91552352 TCTCTGTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 6 0.25
30 18 0.75
ACGTcount: A:0.07, C:0.33, G:0.00, T:0.60
Consensus pattern (30 bp):
CCTTCATTTTCTTATTATTCTTCTTCTCCC
Found at i:91552379 original size:17 final size:17
Alignment explanation
Indices: 91552359--91552393 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
91552349 TCTTCTCTGT
91552359 TTTTTCTCTTATTTTTC
1 TTTTTCTCTTATTTTTC
*
91552376 TTTTTCTCTTCTTTTTC
1 TTTTTCTCTTATTTTTC
91552393 T
1 T
91552394 ACTGCTCAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTTTCTCTTATTTTTC
Found at i:91558485 original size:53 final size:53
Alignment explanation
Indices: 91558404--91558549 Score: 204
Period size: 53 Copynumber: 2.7 Consensus size: 53
91558394 CTTACACGGT
* *
91558404 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
91558459 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
91558512 TCACATTGCACCGATGCCATAGCCCAGCTACGGTCTTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTA
91558550 AACAGGCACA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 76 0.90
54 1 0.01
55 6 0.07
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:91560221 original size:20 final size:20
Alignment explanation
Indices: 91560196--91560238 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
91560186 GTTTTATTGC
91560196 ATAAATTTAGAAATCAAGCA
1 ATAAATTTAGAAATCAAGCA
91560216 ATAAATTTAGAAATCAAGCA
1 ATAAATTTAGAAATCAAGCA
91560236 ATA
1 ATA
91560239 GAATCCATGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.56, C:0.09, G:0.09, T:0.26
Consensus pattern (20 bp):
ATAAATTTAGAAATCAAGCA
Found at i:91560937 original size:31 final size:30
Alignment explanation
Indices: 91560868--91560937 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 30
91560858 ACTTGACAAC
*
91560868 TCATTGACTTAAAAAAAACTTTGAAATAAT
1 TCATTGACTTAAAAAAAACTTTCAAATAAT
* * * *
91560898 ACAGTGACTTAAATGAAAACTTTCAAATAGT
1 TCATTGACTTAAA-AAAAACTTTCAAATAAT
91560929 TCATTGACT
1 TCATTGACT
91560938 ATTTTATAAT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
30 11 0.34
31 21 0.66
ACGTcount: A:0.44, C:0.13, G:0.10, T:0.33
Consensus pattern (30 bp):
TCATTGACTTAAAAAAAACTTTCAAATAAT
Found at i:91569622 original size:18 final size:20
Alignment explanation
Indices: 91569601--91569643 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
91569591 ACATAAATAC
91569601 ATAAAAG-TAGATA-AAATT
1 ATAAAAGATAGATACAAATT
91569619 ATAAAAAGATAGATACAAATT
1 AT-AAAAGATAGATACAAATT
91569640 -TAAA
1 ATAAA
91569644 TATAAATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 2 0.09
19 8 0.36
20 7 0.32
21 5 0.23
ACGTcount: A:0.63, C:0.02, G:0.09, T:0.26
Consensus pattern (20 bp):
ATAAAAGATAGATACAAATT
Found at i:91569633 original size:20 final size:19
Alignment explanation
Indices: 91569603--91569643 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 19
91569593 ATAAATACAT
91569603 AAAAGTAGATA-AAATTATA
1 AAAAGTAGATACAAATT-TA
91569622 AAAAGATAGATACAAATTTA
1 AAAAG-TAGATACAAATTTA
91569642 AA
1 AA
91569644 TATAAATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 5 0.25
20 10 0.50
21 5 0.25
ACGTcount: A:0.63, C:0.02, G:0.10, T:0.24
Consensus pattern (19 bp):
AAAAGTAGATACAAATTTA
Found at i:91571281 original size:27 final size:28
Alignment explanation
Indices: 91571223--91571310 Score: 83
Period size: 27 Copynumber: 3.1 Consensus size: 28
91571213 AAAAATACAA
*
91571223 AAAAATTTAAAATATTTATAAAAATTCT
1 AAAAATTTAAAATATTTATAAAAATTAT
*
91571251 -AAAATTTATAAT-TTTA-AAATAATTAT
1 AAAAATTTAAAATATTTATAAA-AATTAT
* *
91571277 AAAAATTTAAGAAAAATTATAAAGAATATAT
1 AAAAATTTAA-AATATTTATAAA-AAT-TAT
91571308 AAA
1 AAA
91571311 GAAAGTTCAA
Statistics
Matches: 48, Mismatches: 6, Indels: 9
0.76 0.10 0.14
Matches are distributed among these distances:
25 3 0.06
26 9 0.19
27 19 0.40
28 2 0.04
29 3 0.06
30 6 0.12
31 6 0.12
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.36
Consensus pattern (28 bp):
AAAAATTTAAAATATTTATAAAAATTAT
Found at i:91572265 original size:11 final size:11
Alignment explanation
Indices: 91572249--91572279 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
91572239 GTAATGTTAA
91572249 AATATATACAT
1 AATATATACAT
91572260 AATATATACAT
1 AATATATACAT
91572271 ATATATATA
1 A-ATATATA
91572280 AAATAGATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.63
12 7 0.37
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (11 bp):
AATATATACAT
Found at i:91572683 original size:17 final size:16
Alignment explanation
Indices: 91572661--91572696 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
91572651 AAGCAAATAT
91572661 AACAAAATAAAATAAAA
1 AACAAAATAAAA-AAAA
*
91572678 AACAAAGTAAAAAAAA
1 AACAAAATAAAAAAAA
91572694 AAC
1 AAC
91572697 TATATAAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.81, C:0.08, G:0.03, T:0.08
Consensus pattern (16 bp):
AACAAAATAAAAAAAA
Found at i:91572695 original size:28 final size:28
Alignment explanation
Indices: 91572638--91572694 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
91572628 CTAGCAGAAT
* *
91572638 AATAAAATACAAAAAGCAAATATAACAA
1 AATAAAATACAAAAAGCAAATAAAAAAA
91572666 AATAAAATA-AAAAA-CAAAGTAAAAAAA
1 AATAAAATACAAAAAGCAAA-TAAAAAAA
91572693 AA
1 AA
91572695 ACTATATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 13 0.50
28 9 0.35
ACGTcount: A:0.77, C:0.07, G:0.04, T:0.12
Consensus pattern (28 bp):
AATAAAATACAAAAAGCAAATAAAAAAA
Found at i:91572777 original size:3 final size:3
Alignment explanation
Indices: 91572747--91573004 Score: 111
Period size: 3 Copynumber: 87.0 Consensus size: 3
91572737 ATAAGTAAAG
*
91572747 ATA AGTA ATA GTA ATGA A-A ATA AT- ATA ATA ATA ATA ATA AT- ATA
1 ATA A-TA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
91572791 A-A AGGTGA AT- ATA AT- ATA ATA ATA TTA A-A ATA AAA ATA AAA ATA
1 ATA A--T-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
91572835 A-A GTA ATA GATA ATA ATA A-A TATA ATA ATA GA-A AT- ATA ATA TTA
1 ATA ATA ATA -ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA
*
91572879 A-A GATA AT- ATA A-A TATA AT- ATA ATA ATA ATA ATA AT- ATA AAA
1 ATA -ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
91572921 ATG ATA ATA ATG ATG ATA ATA CTA AT- ATA AAA AGA ATA GATA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA
* * *
91572965 ATA GTA ATA AAA ATA GATA CGATA ATA ATA GTA TATA ATA
1 ATA ATA ATA ATA ATA -ATA --ATA ATA ATA ATA -ATA ATA
91573005 TGGTGTTAAA
Statistics
Matches: 194, Mismatches: 29, Indels: 64
0.68 0.10 0.22
Matches are distributed among these distances:
2 31 0.16
3 136 0.70
4 21 0.11
5 4 0.02
6 2 0.01
ACGTcount: A:0.62, C:0.01, G:0.07, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:91572939 original size:54 final size:54
Alignment explanation
Indices: 91572771--91572979 Score: 137
Period size: 54 Copynumber: 3.8 Consensus size: 54
91572761 TGAAAATAAT
* * * *
91572771 ATAATAATAATAATAATATAA-AAGGTGAATATAAT-ATAATAATATTAA-AATAAAA
1 ATAATACTAAT-ATAATATAATAA--TAAATATAATAATAAAAATA-TAATAATAAAG
* * * *
91572826 ATAAAAATAA-AGTAATAGATAATAATAAATATAATAATAGAAATATAATATTAAAG
1 ATAATACTAATA-TAAT--ATAATAATAAATATAATAATAAAAATATAATAATAAAG
* *
91572882 ATAATA-TAAATATAATATAATAAT-AATAATAAT-ATAAAAATGATAATAATGATG
1 ATAATACT-AATATAATATAATAATAAAT-ATAATAATAAAAAT-ATAATAATAAAG
* * *
91572936 ATAATACTAATATAAAAAGAATAGATAAA-ATAGTAATAAAAATA
1 ATAATACTAATAT-AATATAATA-ATAAATATAATAATAAAAATA
91572980 GATACGATAA
Statistics
Matches: 125, Mismatches: 14, Indels: 30
0.74 0.08 0.18
Matches are distributed among these distances:
53 11 0.09
54 37 0.30
55 35 0.28
56 37 0.30
57 5 0.04
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (54 bp):
ATAATACTAATATAATATAATAATAAATATAATAATAAAAATATAATAATAAAG
Found at i:91572974 original size:24 final size:28
Alignment explanation
Indices: 91572936--91573002 Score: 79
Period size: 26 Copynumber: 2.5 Consensus size: 28
91572926 AATAATGATG
*
91572936 ATAATACTAATATAAAAAGA-ATA-GATA
1 ATAATAGT-ATATAAAAAGAGATACGATA
*
91572963 A-AATAGTA-ATAAAAATAGATACGATA
1 ATAATAGTATATAAAAAGAGATACGATA
91572989 ATAATAGTATATAA
1 ATAATAGTATATAA
91573003 TATGGTGTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
24 8 0.24
25 4 0.12
26 10 0.29
27 8 0.24
28 4 0.12
ACGTcount: A:0.61, C:0.03, G:0.09, T:0.27
Consensus pattern (28 bp):
ATAATAGTATATAAAAAGAGATACGATA
Found at i:91573022 original size:127 final size:127
Alignment explanation
Indices: 91572766--91573005 Score: 299
Period size: 127 Copynumber: 1.9 Consensus size: 127
91572756 AGTAATGAAA
* * *
91572766 ATAATATAATAATAATAATAATATAAAAGGTGAATATAATATAATAATATTAAAATAAAAATAAA
1 ATAATATAATAATAATAATAATATAAAAGATGAATATAATATAATAATACTAAAATAAAAAGAAA
* * *
91572831 AATAAAGTAATAGATAATAATAAATATAATAATAGAAATATAATATTAAAGATAATATAAAT
66 AATAAAATAATAGATAAAAATAAAGATAATAATAGAAATATAATATTAAAGATAATATAAAT
* *
91572893 ATAATATAATAATAATAATAATATAAAA-ATG-ATAATAATGATGATAATACTAATATAAAAAGA
1 ATAATATAATAATAATAATAATATAAAAGATGAAT-ATAAT-ATAATAATACTAAAATAAAAAGA
* * *
91572956 ATAGATAAAATAGTA-ATAAAAATAGATACGATAATAATAG-TATATAATAT
64 A-AAATAAAATAATAGATAAAAATA-A-A-GATAATAATAGAAATATAATAT
91573006 GGTGTTAAAT
Statistics
Matches: 96, Mismatches: 11, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
125 2 0.02
126 7 0.07
127 56 0.58
128 11 0.11
129 10 0.10
130 10 0.10
ACGTcount: A:0.62, C:0.01, G:0.07, T:0.30
Consensus pattern (127 bp):
ATAATATAATAATAATAATAATATAAAAGATGAATATAATATAATAATACTAAAATAAAAAGAAA
AATAAAATAATAGATAAAAATAAAGATAATAATAGAAATATAATATTAAAGATAATATAAAT
Found at i:91573864 original size:16 final size:16
Alignment explanation
Indices: 91573843--91573873 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
91573833 ATTTGAATAG
*
91573843 AAAAGAAAGAAGAAAT
1 AAAAGAAAAAAGAAAT
91573859 AAAAGAAAAAAGAAA
1 AAAAGAAAAAAGAAA
91573874 CAGATTCGGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (16 bp):
AAAAGAAAAAAGAAAT
Found at i:91574274 original size:16 final size:17
Alignment explanation
Indices: 91574249--91574290 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
91574239 CTGATTTTTT
91574249 TTGGGCTA-GGGTTTAG
1 TTGGGCTAGGGGTTTAG
*
91574265 TTGGGTTAGGGGTTTAG
1 TTGGGCTAGGGGTTTAG
91574282 TTGGGCTAG
1 TTGGGCTAG
91574291 TAGTTTTGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 7 0.30
17 16 0.70
ACGTcount: A:0.12, C:0.05, G:0.45, T:0.38
Consensus pattern (17 bp):
TTGGGCTAGGGGTTTAG
Found at i:91575730 original size:18 final size:19
Alignment explanation
Indices: 91575709--91575744 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
91575699 AATTTTTGAA
*
91575709 AATTTTATAAA-TATTTTG
1 AATTTTAAAAACTATTTTG
91575727 AATTTTAAAAACTATTTT
1 AATTTTAAAAACTATTTT
91575745 TATTTTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (19 bp):
AATTTTAAAAACTATTTTG
Found at i:91575842 original size:9 final size:9
Alignment explanation
Indices: 91575828--91575866 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
91575818 ACACTAATCT
91575828 ATTATTCGA
1 ATTATTCGA
*
91575837 ATTATTTGA
1 ATTATTCGA
91575846 ATTATTCGA
1 ATTATTCGA
* *
91575855 GTTATTTGA
1 ATTATTCGA
91575864 ATT
1 ATT
91575867 GTGAAATTCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.31, C:0.05, G:0.13, T:0.51
Consensus pattern (9 bp):
ATTATTCGA
Found at i:91575851 original size:18 final size:18
Alignment explanation
Indices: 91575828--91575866 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
91575818 ACACTAATCT
91575828 ATTATTCGAATTATTTGA
1 ATTATTCGAATTATTTGA
*
91575846 ATTATTCGAGTTATTTGA
1 ATTATTCGAATTATTTGA
91575864 ATT
1 ATT
91575867 GTGAAATTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.31, C:0.05, G:0.13, T:0.51
Consensus pattern (18 bp):
ATTATTCGAATTATTTGA
Found at i:91578710 original size:45 final size:45
Alignment explanation
Indices: 91578611--91578701 Score: 175
Period size: 45 Copynumber: 2.0 Consensus size: 45
91578601 CAACAACAGT
91578611 AATGCTTAAACTAGAATTTTTTAAGTTGAAAAAATAATTGGATTA
1 AATGCTTAAACTAGAATTTTTTAAGTTGAAAAAATAATTGGATTA
91578656 AATGCTTAAACTAGAATTTTTTAAGTTG-AAAAATAATTGGATTA
1 AATGCTTAAACTAGAATTTTTTAAGTTGAAAAAATAATTGGATTA
91578700 AA
1 AA
91578702 CTTTTTAAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 18 0.39
45 28 0.61
ACGTcount: A:0.45, C:0.04, G:0.13, T:0.37
Consensus pattern (45 bp):
AATGCTTAAACTAGAATTTTTTAAGTTGAAAAAATAATTGGATTA
Found at i:91579308 original size:16 final size:16
Alignment explanation
Indices: 91579265--91579317 Score: 65
Period size: 16 Copynumber: 3.3 Consensus size: 16
91579255 CATAATGTGA
91579265 AATTT-ATTTTTTATT
1 AATTTAATTTTTTATT
*
91579280 -ATTTACATATTTTATT
1 AATTTA-ATTTTTTATT
91579296 AATTTAATTTTTTAGTT
1 AATTTAATTTTTTA-TT
91579313 AATTT
1 AATTT
91579318 GATGTTTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
14 4 0.12
16 16 0.50
17 12 0.38
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (16 bp):
AATTTAATTTTTTATT
Found at i:91579650 original size:17 final size:18
Alignment explanation
Indices: 91579628--91579681 Score: 69
Period size: 20 Copynumber: 3.1 Consensus size: 18
91579618 AAATAATAAT
91579628 TTAATTTTTTTAA-AAAA
1 TTAATTTTTTTAATAAAA
91579645 TTAA--TTTTTAATAAAA
1 TTAATTTTTTTAATAAAA
91579661 TTTAATTGTTTTTAATAAAA
1 -TTAATT-TTTTTAATAAAA
91579681 T
1 T
91579682 ACAGTTATCT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
15 7 0.22
16 4 0.12
17 8 0.25
19 1 0.03
20 12 0.38
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
TTAATTTTTTTAATAAAA
Found at i:91581748 original size:2 final size:2
Alignment explanation
Indices: 91581741--91581765 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
91581731 AATTATTCAT
91581741 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
91581766 GAAATTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:91584274 original size:176 final size:185
Alignment explanation
Indices: 91583975--91584481 Score: 658
Period size: 194 Copynumber: 2.7 Consensus size: 185
91583965 AATCAGTAAT
91583975 GTTTTATGTCATACTTAAGCCGAAATAGGTTGATATTGTCTATGAATATCTGTGAAATCGGAAAG
1 GTTTTATGTCATACTTAAGCCGAAATAGGTTGATATTGTCTATGAATATCTGTGAAATCGGAAAG
** *
91584040 TTTTAGGTCATATTAAGCGGCAATAGGCGTCTGTCTTAGCATTTGGCATGCCGGTTTGTTGGATC
66 TTTTAGGTCATATTAAGCGGCAATAGGCGTCTGTCTTAGCATTTGGTGTGCAGGTTTGTTGGATC
* * *
91584105 ATTATAT-TT-G-TT-GG-T-T-TC-C-GTCTATTGACATCCTCGAATCCACATA
131 ATTATATGTTGGTTTCGGTTATATCACTGTCGATTGACATCCGCAAATCCACATA
*
91584151 GTTTTATGTCATACTTAAGCCGAAATAGGTTAATATTGTCTATGAATATCTGTGAAATCGGAAAG
1 GTTTTATGTCATACTTAAGCCGAAATAGGTTGATATTGTCTATGAATATCTGTGAAATCGGAAAG
*
91584216 TTTTAGGTCATATTAAGTGGCAATAGGCGTCTGTCTTAGCATTTGGTGTGCAGGTTTGTTGGATC
66 TTTTAGGTCATATTAAGCGGCAATAGGCGTCTGTCTTAGCATTTGGTGTGCAGGTTTGTTGGATC
*
91584281 ATTATATGTGTTGGTTTCGGTTTATAATCAATACATTGTCGATTGATATCCGCAAATCCACATA
131 ATTATA--TGTTGGTTTCGG-TTAT-ATC---AC--TGTCGATTGACATCCGCAAATCCACATA
* * * * *
91584345 GTTTTACGGCATACTTAAGCTGAAATAGGTTGATATTGTGTATGAATATCTGCCG-AATC-GAGA
1 GTTTTATGTCATACTTAAGCCGAAATAGGTTGATATTGTCTATGAATATCTG-TGAAATCGGA-A
* * * * *
91584408 AGTTTTAGGTCATGTTAAGCGGCAATAGGCTTCTGTCTTAACATATGGTGTGAAGGTTTGTTGGA
64 AGTTTTAGGTCATATTAAGCGGCAATAGGCGTCTGTCTTAGCATTTGGTGTGCAGGTTTGTTGGA
*
91584473 TCACTATAT
129 TCATTATAT
91584482 ATGATGTCTC
Statistics
Matches: 289, Mismatches: 22, Indels: 24
0.86 0.07 0.07
Matches are distributed among these distances:
176 131 0.45
178 1 0.00
179 2 0.01
180 1 0.00
181 2 0.01
182 2 0.01
184 1 0.00
185 1 0.00
187 2 0.01
191 1 0.00
192 1 0.00
193 2 0.01
194 141 0.49
195 1 0.00
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.37
Consensus pattern (185 bp):
GTTTTATGTCATACTTAAGCCGAAATAGGTTGATATTGTCTATGAATATCTGTGAAATCGGAAAG
TTTTAGGTCATATTAAGCGGCAATAGGCGTCTGTCTTAGCATTTGGTGTGCAGGTTTGTTGGATC
ATTATATGTTGGTTTCGGTTATATCACTGTCGATTGACATCCGCAAATCCACATA
Found at i:91586988 original size:27 final size:27
Alignment explanation
Indices: 91586958--91587017 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
91586948 ATAGTTTTTC
*
91586958 CTAATTTAATACCTAATTTTTTTTTGT
1 CTAATTTAATACCTAAATTTTTTTTGT
**
91586985 CTAATTTGGTACCTAAATTTTTTTTGT
1 CTAATTTAATACCTAAATTTTTTTTGT
91587012 CTAATT
1 CTAATT
91587018 AGGCACCCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.25, C:0.12, G:0.07, T:0.57
Consensus pattern (27 bp):
CTAATTTAATACCTAAATTTTTTTTGT
Found at i:91587029 original size:27 final size:27
Alignment explanation
Indices: 91586975--91587031 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
91586965 AATACCTAAT
* * *
91586975 TTTTTTTTGTCTAATTTGGTACCTAAA
1 TTTTTTTTGTCTAATTAGGCACCCAAA
91587002 TTTTTTTTGTCTAATTAGGCACCCAAA
1 TTTTTTTTGTCTAATTAGGCACCCAAA
91587029 TTT
1 TTT
91587032 GACATTTTCC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.23, C:0.14, G:0.11, T:0.53
Consensus pattern (27 bp):
TTTTTTTTGTCTAATTAGGCACCCAAA
Found at i:91592618 original size:52 final size:52
Alignment explanation
Indices: 91592493--91592655 Score: 218
Period size: 52 Copynumber: 3.1 Consensus size: 52
91592483 ACACGGATCA
* * * * * *
91592493 CACATCATATCGATGCCATATCTCAGATATGGTCTTATACAGAAGCACATTAT
1 CACATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAGCACA-TAT
*
91592546 CACATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAACACATAT
1 CACATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAGCACATAT
** * *
91592598 CACATTGCACCGATGCCATAGCCTAGCTATGGTCTTATACGGAAGCATATAT
1 CACATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAGCACATAT
91592650 CACATC
1 CACATC
91592656 TTTTCCGTCA
Statistics
Matches: 97, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
52 55 0.57
53 42 0.43
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (52 bp):
CACATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAGCACATAT
Found at i:91603655 original size:20 final size:20
Alignment explanation
Indices: 91603630--91603668 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
91603620 TTAAAGACTT
*
91603630 GAAATTGATATTCAAACATC
1 GAAATTGACATTCAAACATC
91603650 GAAATTGACATTCAAACAT
1 GAAATTGACATTCAAACAT
91603669 TATCTCTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.15, G:0.10, T:0.28
Consensus pattern (20 bp):
GAAATTGACATTCAAACATC
Found at i:91622584 original size:51 final size:51
Alignment explanation
Indices: 91622513--91622613 Score: 175
Period size: 51 Copynumber: 2.0 Consensus size: 51
91622503 ATTTATCCTT
* *
91622513 TGCACATTTGTATTTTAGATGGGATTCATCGCAGGCTTTGTCAATTTTCTC
1 TGCACATTTGTATTTCAGATGGGATTCATCGCAGGCTTTATCAATTTTCTC
*
91622564 TGCACATTTGTATTTCAGATGGGATTCATCGTAGGCTTTATCAATTTTCT
1 TGCACATTTGTATTTCAGATGGGATTCATCGCAGGCTTTATCAATTTTCT
91622614 TATCACCATG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.21, C:0.17, G:0.19, T:0.44
Consensus pattern (51 bp):
TGCACATTTGTATTTCAGATGGGATTCATCGCAGGCTTTATCAATTTTCTC
Found at i:91631697 original size:29 final size:29
Alignment explanation
Indices: 91631655--91631712 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
91631645 GCGTGTATGT
91631655 GTGTGTGAGAGAGGGAGAGAGAGAACTGG
1 GTGTGTGAGAGAGGGAGAGAGAGAACTGG
91631684 GTGTGTGAGAGAGGGAGAGAGAGAACTGG
1 GTGTGTGAGAGAGGGAGAGAGAGAACTGG
91631713 CCTTTTTCAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.03, G:0.52, T:0.14
Consensus pattern (29 bp):
GTGTGTGAGAGAGGGAGAGAGAGAACTGG
Found at i:91634205 original size:14 final size:16
Alignment explanation
Indices: 91634188--91634220 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
91634178 TAATGGAGAA
91634188 TATTTTAAT-TTAT-T
1 TATTTTAATGTTATAT
91634202 TATTTTAATGTTATAT
1 TATTTTAATGTTATAT
91634218 TAT
1 TAT
91634221 CCTATAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 9 0.53
15 4 0.24
16 4 0.24
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (16 bp):
TATTTTAATGTTATAT
Found at i:91635885 original size:6 final size:6
Alignment explanation
Indices: 91635876--91635905 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
91635866 ATTGGAATAA
*
91635876 GTTAAT GTTAAT TTTAAT GTTAAT GTTAAT
1 GTTAAT GTTAAT GTTAAT GTTAAT GTTAAT
91635906 TGAGGATGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.53
Consensus pattern (6 bp):
GTTAAT
Found at i:91637378 original size:21 final size:21
Alignment explanation
Indices: 91637345--91637384 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
91637335 ATAGAGTTAA
*
91637345 CATTTATTATTTAAAAAATAT
1 CATTTACTATTTAAAAAATAT
* *
91637366 CATTTACTGTTTAACAAAT
1 CATTTACTATTTAAAAAAT
91637385 TTACTATTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.10, G:0.03, T:0.45
Consensus pattern (21 bp):
CATTTACTATTTAAAAAATAT
Found at i:91647356 original size:15 final size:15
Alignment explanation
Indices: 91647344--91647373 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
91647334 TTTTAAAATT
91647344 TTAAAATTAAAAAAA
1 TTAAAATTAAAAAAA
*
91647359 TTAAATTTAAAAAAA
1 TTAAAATTAAAAAAA
91647374 AACATAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
TTAAAATTAAAAAAA
Found at i:91650584 original size:31 final size:31
Alignment explanation
Indices: 91650549--91650621 Score: 76
Period size: 31 Copynumber: 2.4 Consensus size: 31
91650539 TAATACATGG
* *
91650549 TAAAATTATAATTTATTCCCTCTTAAAA-TAA
1 TAAAATTATAATTTACTCCCTCTAAAAACT-A
* * *
91650580 TAAAATTTTGATTTACTCCTTCTAAAAACTA
1 TAAAATTATAATTTACTCCCTCTAAAAACTA
*
91650611 TAAAAATATAA
1 TAAAATTATAA
91650622 GTCAATAAAT
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
31 32 0.97
32 1 0.03
ACGTcount: A:0.47, C:0.12, G:0.01, T:0.40
Consensus pattern (31 bp):
TAAAATTATAATTTACTCCCTCTAAAAACTA
Found at i:91651819 original size:11 final size:11
Alignment explanation
Indices: 91651803--91651827 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
91651793 CACCTGACTA
91651803 TAAATAATTAT
1 TAAATAATTAT
91651814 TAAATAATTAT
1 TAAATAATTAT
91651825 TAA
1 TAA
91651828 CGAATTGATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
TAAATAATTAT
Found at i:91653702 original size:9 final size:9
Alignment explanation
Indices: 91653643--91653726 Score: 57
Period size: 9 Copynumber: 9.2 Consensus size: 9
91653633 GTCATAATAA
*
91653643 AAAAGTATT
1 AAAATTATT
91653652 AAAATT-TT
1 AAAATTATT
**
91653660 AAAAGCATT
1 AAAATTATT
*
91653669 AAATATTACAAT
1 AAA-ATT--ATT
91653681 AAAATTA-T
1 AAAATTATT
*
91653689 AAAATTCTT
1 AAAATTATT
91653698 AAAATTATT
1 AAAATTATT
*
91653707 AAAAAT-TT
1 AAAATTATT
91653715 AAAAGTTATT
1 AAAA-TTATT
91653725 AA
1 AA
91653727 GAAATTATAA
Statistics
Matches: 58, Mismatches: 10, Indels: 13
0.72 0.12 0.16
Matches are distributed among these distances:
8 19 0.33
9 26 0.45
10 5 0.09
11 3 0.05
12 5 0.09
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.37
Consensus pattern (9 bp):
AAAATTATT
Found at i:91653702 original size:17 final size:16
Alignment explanation
Indices: 91653680--91653738 Score: 55
Period size: 17 Copynumber: 3.3 Consensus size: 16
91653670 AATATTACAA
*
91653680 TAAAATTATAAAATTCT
1 TAAAATTATAAAAAT-T
91653697 TAAAATTATTAAAAATT
1 TAAAATTA-TAAAAATT
91653714 TAAAAGTTATTAAGAAATT
1 TAAAA-TTA-TAA-AAATT
91653733 ATAAAA
1 -TAAAA
91653739 AAATAAAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
17 14 0.38
18 13 0.35
19 5 0.14
20 5 0.14
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (16 bp):
TAAAATTATAAAAATT
Found at i:91653723 original size:18 final size:18
Alignment explanation
Indices: 91653696--91653738 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 18
91653686 TATAAAATTC
91653696 TTAAAATTATTAA-AAAT
1 TTAAAATTATTAAGAAAT
91653713 TTAAAAGTTATTAAGAAAT
1 TTAAAA-TTATTAAGAAAT
91653732 TATAAAA
1 T-TAAAA
91653739 AAATAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 6 0.26
18 7 0.30
19 5 0.22
20 5 0.22
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (18 bp):
TTAAAATTATTAAGAAAT
Found at i:91653988 original size:15 final size:15
Alignment explanation
Indices: 91653964--91653993 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
91653954 ATATTTTACC
*
91653964 ATTTTTAATATTTTT
1 ATTTTAAATATTTTT
91653979 ATTTTAAATATTTTT
1 ATTTTAAATATTTTT
91653994 TTTACAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
ATTTTAAATATTTTT
Found at i:91669636 original size:42 final size:43
Alignment explanation
Indices: 91669562--91669648 Score: 151
Period size: 42 Copynumber: 2.0 Consensus size: 43
91669552 AATTATTGTA
91669562 ATTAAATTGAATTTAACAAAAAAATAGTAGTGTTAACAATTGG
1 ATTAAATTGAATTTAACAAAAAAATAGTAGTGTTAACAATTGG
91669605 ATTAATATTGAATTT-A-AAAAAAATAGTAGTGTTAACAATTGG
1 ATTAA-ATTGAATTTAACAAAAAAATAGTAGTGTTAACAATTGG
91669647 AT
1 AT
91669649 CTGAATTTAA
Statistics
Matches: 43, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
42 28 0.65
43 6 0.14
44 9 0.21
ACGTcount: A:0.48, C:0.03, G:0.14, T:0.34
Consensus pattern (43 bp):
ATTAAATTGAATTTAACAAAAAAATAGTAGTGTTAACAATTGG
Found at i:91669656 original size:37 final size:39
Alignment explanation
Indices: 91669569--91669660 Score: 116
Period size: 42 Copynumber: 2.3 Consensus size: 39
91669559 GTAATTAAAT
*
91669569 TGAATTTAACAAAAAAATAGTAGTGTTAACAATTGGATTAATAT
1 TGAATTT-A-AAAAAAATAGTAGTGTTAACAATTGG---AATAC
91669613 TGAATTTAAAAAAAATAGTAGTGTTAACAATTGG-AT-C
1 TGAATTTAAAAAAAATAGTAGTGTTAACAATTGGAATAC
91669650 TGAATTTAAAA
1 TGAATTTAAAA
91669661 TTCTAAAAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
37 11 0.23
38 2 0.04
42 26 0.55
43 1 0.02
44 7 0.15
ACGTcount: A:0.48, C:0.04, G:0.14, T:0.34
Consensus pattern (39 bp):
TGAATTTAAAAAAAATAGTAGTGTTAACAATTGGAATAC
Found at i:91669669 original size:43 final size:42
Alignment explanation
Indices: 91669579--91669673 Score: 129
Period size: 42 Copynumber: 2.2 Consensus size: 42
91669569 TGAATTTAAC
* *
91669579 AAAAAAATAGTAGTGTTAACAATTGGATTAATATTGAATTTA
1 AAAAAAATAGTAGTGTTAACAATTGGATTAATATTAAAATTA
*
91669621 AAAAAAATAGTAGTGTTAACAATTGGATCTGAAT-TTAAAATTC
1 AAAAAAATAGTAGTGTTAACAATTGGAT-T-AATATTAAAATTA
*
91669664 TAAAAAATAG
1 AAAAAAATAG
91669674 AGGGCTTAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
42 28 0.60
43 16 0.34
44 3 0.06
ACGTcount: A:0.49, C:0.04, G:0.14, T:0.33
Consensus pattern (42 bp):
AAAAAAATAGTAGTGTTAACAATTGGATTAATATTAAAATTA
Found at i:91685393 original size:48 final size:48
Alignment explanation
Indices: 91685341--91685460 Score: 240
Period size: 48 Copynumber: 2.5 Consensus size: 48
91685331 ATTACAAACA
91685341 TCAATTATTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
1 TCAATTATTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
91685389 TCAATTATTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
1 TCAATTATTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
91685437 TCAATTATTTACCCTATTAACAAA
1 TCAATTATTTACCCTATTAACAAA
91685461 GCTCGGACTA
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 72 1.00
ACGTcount: A:0.38, C:0.19, G:0.00, T:0.42
Consensus pattern (48 bp):
TCAATTATTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
Found at i:91687025 original size:29 final size:28
Alignment explanation
Indices: 91686969--91687039 Score: 65
Period size: 29 Copynumber: 2.5 Consensus size: 28
91686959 AAACCCTATT
*
91686969 TCCCCTTTTCTTTCTTCTTTCTTCTTTC
1 TCCCCTTTTCTTTCTTCTTTCATCTTTC
91686997 TCCCCTGTTTCTTCTCTGT-TTTCAT-TTTC
1 TCCCCT-TTTCTT-TCT-TCTTTCATCTTTC
**
91687026 ATTTCCTTTTCTTT
1 -TCCCCTTTTCTTT
91687040 TAACTTATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
28 7 0.19
29 16 0.44
30 12 0.33
31 1 0.03
ACGTcount: A:0.03, C:0.31, G:0.03, T:0.63
Consensus pattern (28 bp):
TCCCCTTTTCTTTCTTCTTTCATCTTTC
Found at i:91687065 original size:2 final size:2
Alignment explanation
Indices: 91687058--91687103 Score: 50
Period size: 2 Copynumber: 26.0 Consensus size: 2
91687048 TTGTTTCTTT
91687058 TA TA TA TA TA -A TA TA TA TA TA -A TA TA -A TA TA -A TA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
91687095 TA TA -A TA TA
1 TA TA TA TA TA
91687104 CTTAATTATT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
1 6 0.16
2 32 0.84
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (2 bp):
TA
Found at i:91687082 original size:5 final size:5
Alignment explanation
Indices: 91687058--91687103 Score: 74
Period size: 5 Copynumber: 8.8 Consensus size: 5
91687048 TTGTTTCTTT
91687058 TATATA TATAA TATATA TATAA TATAA TATAA TATAA TATAA TATA
1 TATA-A TATAA TATA-A TATAA TATAA TATAA TATAA TATAA TATA
91687104 CTTAATTATT
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
5 30 0.77
6 9 0.23
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (5 bp):
TATAA
Found at i:91688467 original size:96 final size:96
Alignment explanation
Indices: 91688303--91688481 Score: 286
Period size: 96 Copynumber: 1.9 Consensus size: 96
91688293 TGTCATTGAT
* * *
91688303 GGGAACGATGGAACAGATACGGAGCCCAATAAGCTTGGTTCGAGCAAGGGAAAAGCCGAAGCCAA
1 GGGAACGATGGAACAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGGAAAAGCCGAAGCCAA
91688368 GAGGGCAAACAGGAGCAAGCCTGACATCAAA
66 GAGGGCAAACAGGAGCAAGCCTGACATCAAA
* * *
91688399 GGGAACGATGGAGCAGACAAGGAGCCTAAGAAGCTTGGTTCGAGCAAGGGTAAAGCCGAAGCCAA
1 GGGAACGATGGAACAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGGAAAAGCCGAAGCCAA
* *
91688464 GAGGGCTAAGAGGAGCAA
66 GAGGGCAAACAGGAGCAA
91688482 AAAGAAGCGA
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
96 75 1.00
ACGTcount: A:0.37, C:0.19, G:0.34, T:0.09
Consensus pattern (96 bp):
GGGAACGATGGAACAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGGAAAAGCCGAAGCCAA
GAGGGCAAACAGGAGCAAGCCTGACATCAAA
Found at i:91692330 original size:24 final size:23
Alignment explanation
Indices: 91692303--91692428 Score: 101
Period size: 24 Copynumber: 5.3 Consensus size: 23
91692293 TTACTAGATA
*
91692303 TGCGGATTTAAGTGGCACTATGTC
1 TGCGGATTTAA-TGGCACTATGTG
* *
91692327 TGCGTATTTGTATGGCACTATGTG
1 TGCGGATTT-AATGGCACTATGTG
* * *
91692351 AGCGTATTTGTATGGCACTATGTG
1 TGCGGATTT-AATGGCACTATGTG
*
91692375 TGCGTATATGTAA-GGCACTATGTG
1 TGCGGAT-T-TAATGGCACTATGTG
* * *
91692399 TGCAGAATTATTTGGCACTATGTG
1 TGCGGATTTA-ATGGCACTATGTG
91692423 TGCGGA
1 TGCGGA
91692429 GTTGAATCGT
Statistics
Matches: 86, Mismatches: 11, Indels: 10
0.80 0.10 0.09
Matches are distributed among these distances:
22 2 0.02
23 1 0.01
24 79 0.92
25 3 0.03
26 1 0.01
ACGTcount: A:0.21, C:0.13, G:0.29, T:0.36
Consensus pattern (23 bp):
TGCGGATTTAATGGCACTATGTG
Found at i:91692392 original size:48 final size:48
Alignment explanation
Indices: 91692315--91692426 Score: 147
Period size: 48 Copynumber: 2.3 Consensus size: 48
91692305 CGGATTTAAG
* * * *
91692315 TGGCACTATGTCTGCGTATTTGTATGGCACTATGTGAGC-GTATT-TGT
1 TGGCACTATGTGTGCGTATATGTAAGGCACTATGTGAGCAGAATTAT-T
*
91692362 ATGGCACTATGTGTGCGTATATGTAAGGCACTATGTGTGCAGAATTATT
1 -TGGCACTATGTGTGCGTATATGTAAGGCACTATGTGAGCAGAATTATT
91692411 TGGCACTATGTGTGCG
1 TGGCACTATGTGTGCG
91692427 GAGTTGAATC
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
48 51 0.89
49 5 0.09
50 1 0.02
ACGTcount: A:0.21, C:0.14, G:0.29, T:0.37
Consensus pattern (48 bp):
TGGCACTATGTGTGCGTATATGTAAGGCACTATGTGAGCAGAATTATT
Found at i:91694969 original size:51 final size:51
Alignment explanation
Indices: 91694892--91695049 Score: 253
Period size: 51 Copynumber: 3.1 Consensus size: 51
91694882 ACTTCTTATC
* * * *
91694892 AGTGACAAGTGATAAGTGGTAACCTCAGCTACACTCATTTGATTAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGACA
*
91694943 AGTGACAAGTGATAAATGGTAGCCTCAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGACA
* *
91694994 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGACA
91695045 AGTGA
1 AGTGA
91695050 TAAATGTGAT
Statistics
Matches: 99, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 99 1.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (51 bp):
AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGACA
Found at i:91697040 original size:29 final size:28
Alignment explanation
Indices: 91696984--91697054 Score: 65
Period size: 29 Copynumber: 2.5 Consensus size: 28
91696974 AAACCCTATT
*
91696984 TCCCCTTTTCTTTCTTCTTTCTTCTTTC
1 TCCCCTTTTCTTTCTTCTTTCATCTTTC
91697012 TCCCCTGTTTCTTCTCTGT-TTTCAT-TTTC
1 TCCCCT-TTTCTT-TCT-TCTTTCATCTTTC
**
91697041 ATTTCCTTTTCTTT
1 -TCCCCTTTTCTTT
91697055 TAACTTATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
28 7 0.19
29 16 0.44
30 12 0.33
31 1 0.03
ACGTcount: A:0.03, C:0.31, G:0.03, T:0.63
Consensus pattern (28 bp):
TCCCCTTTTCTTTCTTCTTTCATCTTTC
Done.