Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 289 of 290
Found at i:92438601 original size:17 final size:16
Alignment explanation
Indices: 92438560--92438604 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 16
92438550 CACGGCCAAG
*
92438560 TCACACGCCCGTGTCC
1 TCACACGGCCGTGTCC
92438576 -CA-A-GGCCGTGTCC
1 TCACACGGCCGTGTCC
92438589 TTCACACGGCCGTGTC
1 -TCACACGGCCGTGTC
92438605 TCATGCCCGT
Statistics
Matches: 24, Mismatches: 1, Indels: 7
0.75 0.03 0.22
Matches are distributed among these distances:
13 9 0.38
14 1 0.04
15 4 0.17
16 1 0.04
17 9 0.38
ACGTcount: A:0.13, C:0.42, G:0.24, T:0.20
Consensus pattern (16 bp):
TCACACGGCCGTGTCC
Found at i:92438615 original size:30 final size:30
Alignment explanation
Indices: 92438560--92438616 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
92438550 CACGGCCAAG
*
92438560 TCACACGCCCGTGTCCCAAGGCCGTGTCCT
1 TCACACGCCCGTGTCCCAAGCCCGTGTCCT
* * *
92438590 TCACACGGCCGTGTCTCATGCCCGTGT
1 TCACACGCCCGTGTCCCAAGCCCGTGT
92438617 GCTCAATACT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.12, C:0.40, G:0.25, T:0.23
Consensus pattern (30 bp):
TCACACGCCCGTGTCCCAAGCCCGTGTCCT
Found at i:92441089 original size:25 final size:25
Alignment explanation
Indices: 92441055--92441105 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
92441045 TTGTACTTAG
92441055 GCTCACAACCATATTAGCCAAATAA
1 GCTCACAACCATATTAGCCAAATAA
92441080 GCTCACAACCATATTAGCCAAATAA
1 GCTCACAACCATATTAGCCAAATAA
92441105 G
1 G
92441106 ACAATTTACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.43, C:0.27, G:0.10, T:0.20
Consensus pattern (25 bp):
GCTCACAACCATATTAGCCAAATAA
Found at i:92444702 original size:13 final size:13
Alignment explanation
Indices: 92444684--92444711 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
92444674 ATATCTCTAA
92444684 AAATTTTCGAAAT
1 AAATTTTCGAAAT
92444697 AAATTTTCGAAAT
1 AAATTTTCGAAAT
92444710 AA
1 AA
92444712 TTTCTTCAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (13 bp):
AAATTTTCGAAAT
Found at i:92445485 original size:20 final size:20
Alignment explanation
Indices: 92445437--92445487 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
92445427 TTTGATTAAT
*
92445437 TTAATTTTACTTAATCAAAA
1 TTAATTTTCCTTAATCAAAA
*
92445457 TTAATTTTCCTTGATCAAAA
1 TTAATTTTCCTTAATCAAAA
92445477 TTAATTTTCCT
1 TTAATTTTCCT
92445488 AAAAACCTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.35, C:0.14, G:0.02, T:0.49
Consensus pattern (20 bp):
TTAATTTTCCTTAATCAAAA
Found at i:92448160 original size:46 final size:46
Alignment explanation
Indices: 92448110--92448285 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
92448100 TGGTTGAGCA
92448110 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
92448156 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
92448201 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
92448249 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
92448286 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 64 0.58
47 28 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:92448266 original size:93 final size:93
Alignment explanation
Indices: 92448107--92448278 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
92448097 GGATGGTTGA
* *
92448107 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
92448172 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
92448200 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
92448265 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
92448279 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:92475073 original size:20 final size:19
Alignment explanation
Indices: 92475048--92475108 Score: 72
Period size: 20 Copynumber: 3.2 Consensus size: 19
92475038 TTAAAACAAT
92475048 TTTAACTTTGATTGAAAATA
1 TTTAAC-TTGATTGAAAATA
* *
92475068 TTTAACTCGATTGAAAACA
1 TTTAACTTGATTGAAAATA
92475087 TTTTAACTTGATT-AAAAT-
1 -TTTAACTTGATTGAAAATA
92475105 TTTA
1 TTTA
92475109 TTGAAAAAGT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
17 4 0.11
19 15 0.42
20 17 0.47
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.44
Consensus pattern (19 bp):
TTTAACTTGATTGAAAATA
Found at i:92475081 original size:19 final size:19
Alignment explanation
Indices: 92475057--92475108 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
92475047 TTTTAACTTT
92475057 GATTGAAAATATTTAACTC
1 GATTGAAAATATTTAACTC
* *
92475076 GATTGAAAACATTTTAACTT
1 GATTGAAAATA-TTTAACTC
92475096 GATT-AAAAT-TTTA
1 GATTGAAAATATTTA
92475109 TTGAAAAAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 4 0.14
19 14 0.48
20 11 0.38
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.40
Consensus pattern (19 bp):
GATTGAAAATATTTAACTC
Found at i:92475227 original size:22 final size:23
Alignment explanation
Indices: 92475199--92475245 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
92475189 CTTTTGTTCA
*
92475199 ATTTTAACTT-TTATTTAAAAAC
1 ATTTTAACTTGTTATATAAAAAC
* *
92475221 ATTTTAATTTGTTATATCAAAAC
1 ATTTTAACTTGTTATATAAAAAC
92475244 AT
1 AT
92475246 ATTATCAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.40, C:0.09, G:0.02, T:0.49
Consensus pattern (23 bp):
ATTTTAACTTGTTATATAAAAAC
Found at i:92477973 original size:31 final size:31
Alignment explanation
Indices: 92477935--92477993 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
92477925 TTTGGCTAGA
92477935 CATTGTATAATTCGATTC-TTCATACATAATG
1 CATTGTATAATTCGA-TCATTCATACATAATG
92477966 CATTGTATAATTCGATCATTCATACATA
1 CATTGTATAATTCGATCATTCATACATA
92477994 GTGTATTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
30 2 0.07
31 25 0.93
ACGTcount: A:0.34, C:0.17, G:0.08, T:0.41
Consensus pattern (31 bp):
CATTGTATAATTCGATCATTCATACATAATG
Found at i:92481445 original size:21 final size:21
Alignment explanation
Indices: 92481406--92481445 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
92481396 GGGTCACATG
*
92481406 CCCGTGTGGACAAGGGACACA
1 CCCGTGTGGACAAGCGACACA
* *
92481427 CCCGTGTGGCCATGCGACA
1 CCCGTGTGGACAAGCGACA
92481446 TGCCTATGCC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.33, G:0.33, T:0.12
Consensus pattern (21 bp):
CCCGTGTGGACAAGCGACACA
Found at i:92482584 original size:31 final size:31
Alignment explanation
Indices: 92482546--92482604 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
92482536 TTCATCCAGG
*
92482546 TAAGCCTTATTTTTCATCCGTTCTTCAACTT
1 TAAGCCTTATTTTTCATCCATTCTTCAACTT
* *
92482577 TAAGCCTTCTTTTTCTTCCATTCTTCAA
1 TAAGCCTTATTTTTCATCCATTCTTCAA
92482605 TTTTTCCATC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.19, C:0.27, G:0.05, T:0.49
Consensus pattern (31 bp):
TAAGCCTTATTTTTCATCCATTCTTCAACTT
Found at i:92484258 original size:92 final size:93
Alignment explanation
Indices: 92484135--92484312 Score: 304
Period size: 92 Copynumber: 1.9 Consensus size: 93
92484125 CTTTTCTTAA
* * * *
92484135 CCTTTATTTAATTTTGTTAGGATTGAGCTCTGATTAGATATTTTGTTTTGGGTTTAATTGTTGAT
1 CCTTTATTTAACTTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAATTGTTGAT
92484200 TCATCTTTTTTCTATTATTTCTTCTTCG
66 TCATCTTTTTTCTATTATTTCTTCTTCG
*
92484228 CCTTTATTT-ACTTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAATTGTTTAT
1 CCTTTATTTAACTTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAATTGTTGAT
92484292 TCATCTTTTTTCTATTATTTC
66 TCATCTTTTTTCTATTATTTC
92484313 CTGGCAGCTC
Statistics
Matches: 80, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
92 71 0.89
93 9 0.11
ACGTcount: A:0.19, C:0.11, G:0.14, T:0.57
Consensus pattern (93 bp):
CCTTTATTTAACTTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAATTGTTGAT
TCATCTTTTTTCTATTATTTCTTCTTCG
Found at i:92484784 original size:25 final size:25
Alignment explanation
Indices: 92484750--92484797 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
92484740 AAGGTTAATG
92484750 CTATTTGTCAATTCCCATTCAACGT
1 CTATTTGTCAATTCCCATTCAACGT
92484775 CTATTTGTCAATTCCCATTCAAC
1 CTATTTGTCAATTCCCATTCAAC
92484798 ATTCTCTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.25, C:0.29, G:0.06, T:0.40
Consensus pattern (25 bp):
CTATTTGTCAATTCCCATTCAACGT
Found at i:92485744 original size:20 final size:20
Alignment explanation
Indices: 92485716--92485755 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
92485706 ATAATTTAAA
92485716 ATATAAATTTATTAATATAT
1 ATATAAATTTATTAATATAT
*
92485736 ATATCAATTTATTAATATAT
1 ATATAAATTTATTAATATAT
92485756 GTAAAAATAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (20 bp):
ATATAAATTTATTAATATAT
Found at i:92485860 original size:19 final size:20
Alignment explanation
Indices: 92485836--92485881 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 20
92485826 TGTCCAAATA
92485836 CCAGAAAAGTAAATCA-TTT
1 CCAGAAAAGTAAATCATTTT
92485855 CCAGAAAAGTAAATCATTTT
1 CCAGAAAAGTAAATCATTTT
92485875 CCAGAAA
1 CCAGAAA
92485882 TCATTTTCCG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.48, C:0.17, G:0.11, T:0.24
Consensus pattern (20 bp):
CCAGAAAAGTAAATCATTTT
Found at i:92485884 original size:14 final size:13
Alignment explanation
Indices: 92485865--92485894 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
92485855 CCAGAAAAGT
92485865 AAATCATTTTCCAG
1 AAATCATTTTCC-G
92485879 AAATCATTTTCCG
1 AAATCATTTTCCG
92485892 AAA
1 AAA
92485895 AACATTTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (13 bp):
AAATCATTTTCCG
Found at i:92488970 original size:47 final size:47
Alignment explanation
Indices: 92488861--92488971 Score: 127
Period size: 47 Copynumber: 2.4 Consensus size: 47
92488851 CCGGGATAAG
* * * *
92488861 CACATAGTGCTTCATCGGAATAAATCTGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
* * *
92488908 CACAAAGTACTTCATCGGAACAAATCCGAAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTA-TAGTA
92488955 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
92488972 ACTCAATGTC
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
46 1 0.02
47 50 0.94
48 2 0.04
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.27
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
Found at i:92489730 original size:4 final size:4
Alignment explanation
Indices: 92489717--92489806 Score: 69
Period size: 4 Copynumber: 22.5 Consensus size: 4
92489707 TCAAATTTCC
* ** *
92489717 CTTT -TTT CTTT CTTT CTTT CTTT CCTT CTTT CTTT CTCA CGTTT GCTCT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT C-TTT -CTTT
** *
92489766 CTGTT -AGT CTTT CTAT CTTT CTTT CTTT -TTT CTTT CTTT CT
1 CT-TT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CT
92489807 CACGTTTGCT
Statistics
Matches: 66, Mismatches: 14, Indels: 12
0.72 0.15 0.13
Matches are distributed among these distances:
3 7 0.11
4 54 0.82
5 4 0.06
6 1 0.02
ACGTcount: A:0.03, C:0.26, G:0.04, T:0.67
Consensus pattern (4 bp):
CTTT
Found at i:92489838 original size:53 final size:54
Alignment explanation
Indices: 92489720--92489838 Score: 181
Period size: 53 Copynumber: 2.2 Consensus size: 54
92489710 AATTTCCCTT
* *
92489720 TTTTCT-TTCTTTCTTTCTTTCCTTCTTTCTTTCTCACGTTTGCTCTCTGTTAG
1 TTTTCTATTCTTTCTTTCTTTCCTTCTTTCTTTCTCACGTTTGCTCTCTGTAAC
*
92489773 TCTTTCTA-TCTTTCTTTCTTT-TTTCTTTCTTTCTCACGTTTGCTCTCTGTAAC
1 T-TTTCTATTCTTTCTTTCTTTCCTTCTTTCTTTCTCACGTTTGCTCTCTGTAAC
92489826 TTTTCTATTCTTT
1 TTTTCTATTCTTT
92489839 ACTCATTATT
Statistics
Matches: 60, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
52 6 0.10
53 36 0.60
54 18 0.30
ACGTcount: A:0.06, C:0.25, G:0.06, T:0.63
Consensus pattern (54 bp):
TTTTCTATTCTTTCTTTCTTTCCTTCTTTCTTTCTCACGTTTGCTCTCTGTAAC
Found at i:92489850 original size:14 final size:14
Alignment explanation
Indices: 92489831--92489861 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
92489821 GTAACTTTTC
92489831 TATTCTTTACTCAT
1 TATTCTTTACTCAT
*
92489845 TATTCTTTATTCAT
1 TATTCTTTACTCAT
92489859 TAT
1 TAT
92489862 ACTATATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.16, G:0.00, T:0.61
Consensus pattern (14 bp):
TATTCTTTACTCAT
Found at i:92494064 original size:59 final size:58
Alignment explanation
Indices: 92493991--92494162 Score: 195
Period size: 59 Copynumber: 2.9 Consensus size: 58
92493981 TTTTAATATT
* * * *
92493991 ATATATTATAATTTTTA-TAAATCATATTTTAATAGTAATTATATTAAGAATGTTATTAAA
1 ATATA-TATTATTTTTATTAAATTATA-TTTAATAATAATTATATTAA-AATATTATTAAA
* * * *
92494051 TTATATATTA-TTTTATTAAATTTTATTTAATAATAATTATGTTAAAATATGATTAAA
1 ATATATATTATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATTATTAAA
* * *
92494108 ATATTTATTATTTTTTATTAAATTATATTTAATAATAATTTTATTAAAATTTTAT
1 ATATATATTA-TTTTTATTAAATTATATTTAATAATAATTATATTAAAATATTAT
92494163 AATAATAACA
Statistics
Matches: 94, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
57 18 0.19
58 23 0.24
59 49 0.52
60 4 0.04
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (58 bp):
ATATATATTATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATTATTAAA
Found at i:92494164 original size:22 final size:23
Alignment explanation
Indices: 92494102--92494168 Score: 75
Period size: 22 Copynumber: 2.9 Consensus size: 23
92494092 TTAAAATATG
* *
92494102 ATTAAAATATTTATTAT-TTTTT
1 ATTAAAATATTTATAATAATTTT
92494124 ATTAAATTATATTTAATAATAATTTT
1 ATTAAA--ATATTT-ATAATAATTTT
92494150 ATTAAAAT-TTTATAATAAT
1 ATTAAAATATTTATAATAAT
92494169 AACAATAATC
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
22 14 0.36
23 3 0.08
24 8 0.21
25 4 0.10
26 10 0.26
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
ATTAAAATATTTATAATAATTTT
Found at i:92497688 original size:15 final size:16
Alignment explanation
Indices: 92497654--92497688 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
92497644 AATGCCATAG
*
92497654 TTTTCTCCCTTTTTAG
1 TTTTCTCCCTTTTTAC
92497670 TTTTCTCCCTTTTT-C
1 TTTTCTCCCTTTTTAC
92497685 TTTT
1 TTTT
92497689 TTTTGCATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.03, C:0.26, G:0.03, T:0.69
Consensus pattern (16 bp):
TTTTCTCCCTTTTTAC
Found at i:92497690 original size:17 final size:16
Alignment explanation
Indices: 92497651--92497683 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
92497641 TTTAATGCCA
92497651 TAGTTTTCTCCCTTTT
1 TAGTTTTCTCCCTTTT
92497667 TAGTTTTCTCCCTTTT
1 TAGTTTTCTCCCTTTT
92497683 T
1 T
92497684 CTTTTTTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.06, C:0.24, G:0.06, T:0.64
Consensus pattern (16 bp):
TAGTTTTCTCCCTTTT
Found at i:92504958 original size:31 final size:32
Alignment explanation
Indices: 92504901--92504989 Score: 101
Period size: 32 Copynumber: 2.8 Consensus size: 32
92504891 ACTCAAGATC
* *
92504901 ACTAAACTATTACTAAA-TTTTTATTTTGA-TT
1 ACTAAACTATT-CAAAAGTTTTTATTTTAAGTT
* *
92504932 ACTTAACTATTCAAAAGTTTTCATTTTAAGTT
1 ACTAAACTATTCAAAAGTTTTTATTTTAAGTT
* *
92504964 CCTAAACTATACAAAAGTTTTTATTT
1 ACTAAACTATTCAAAAGTTTTTATTT
92504990 AAATCACTGG
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
30 4 0.08
31 20 0.42
32 24 0.50
ACGTcount: A:0.36, C:0.12, G:0.04, T:0.47
Consensus pattern (32 bp):
ACTAAACTATTCAAAAGTTTTTATTTTAAGTT
Found at i:92514110 original size:28 final size:28
Alignment explanation
Indices: 92514066--92514262 Score: 272
Period size: 28 Copynumber: 7.0 Consensus size: 28
92514056 GATTAACACT
*
92514066 TGTAGACTATTGCTTGAAAGATAGTCCA
1 TGTAGACTCTTGCTTGAAAGATAGTCCA
*
92514094 TGTGGACTCTTGCTTGAAAGATAGTCCA
1 TGTAGACTCTTGCTTGAAAGATAGTCCA
*
92514122 TGTAGACTCTT-ATTGGAAAGATAGTCCA
1 TGTAGACTCTTGCTT-GAAAGATAGTCCA
*
92514150 TGTGGACTCTTGCTTGAAAGATAGTCCA
1 TGTAGACTCTTGCTTGAAAGATAGTCCA
* *
92514178 TGCAGACTCTT-ATTGGAAAGATAGTCCA
1 TGTAGACTCTTGCTT-GAAAGATAGTCCA
*
92514206 TGTGGACTCTTGCTTGAAAGATAGTCCA
1 TGTAGACTCTTGCTTGAAAGATAGTCCA
* * *
92514234 TGCAAACTCTTGCTTGAAAGATAATCCA
1 TGTAGACTCTTGCTTGAAAGATAGTCCA
92514262 T
1 T
92514263 ACGGACTATA
Statistics
Matches: 149, Mismatches: 16, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
27 4 0.03
28 141 0.95
29 4 0.03
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.31
Consensus pattern (28 bp):
TGTAGACTCTTGCTTGAAAGATAGTCCA
Found at i:92514269 original size:56 final size:56
Alignment explanation
Indices: 92514081--92514262 Score: 312
Period size: 56 Copynumber: 3.2 Consensus size: 56
92514071 ACTATTGCTT
*
92514081 GAAAGATAGTCCATGTGGACTCTTGCTTGAAAGATAGTCCATGTAGACTCTTATTG
1 GAAAGATAGTCCATGTGGACTCTTGCTTGAAAGATAGTCCATGCAGACTCTTATTG
92514137 GAAAGATAGTCCATGTGGACTCTTGCTTGAAAGATAGTCCATGCAGACTCTTATTG
1 GAAAGATAGTCCATGTGGACTCTTGCTTGAAAGATAGTCCATGCAGACTCTTATTG
* *
92514193 GAAAGATAGTCCATGTGGACTCTTGCTTGAAAGATAGTCCATGCAAACTCTTGCTT-
1 GAAAGATAGTCCATGTGGACTCTTGCTTGAAAGATAGTCCATGCAGACTCTT-ATTG
*
92514249 GAAAGATAATCCAT
1 GAAAGATAGTCCAT
92514263 ACGGACTATA
Statistics
Matches: 121, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
56 119 0.98
57 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (56 bp):
GAAAGATAGTCCATGTGGACTCTTGCTTGAAAGATAGTCCATGCAGACTCTTATTG
Found at i:92534698 original size:32 final size:32
Alignment explanation
Indices: 92534653--92534732 Score: 101
Period size: 32 Copynumber: 2.5 Consensus size: 32
92534643 TTTTAGAGGA
* *
92534653 ATATTGTTATCATTT-AACAAAATTAAAGT-TG
1 ATATTGTTATCATTTCAA-AAAATGAAAATGTG
92534684 ATATATGTTATCATTTCAAAAAATGAAAATGTG
1 ATAT-TGTTATCATTTCAAAAAATGAAAATGTG
92534717 ATATTAGTTATCATTT
1 ATATT-GTTATCATTT
92534733 TACAGAACTG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
31 4 0.09
32 21 0.49
33 18 0.42
ACGTcount: A:0.41, C:0.06, G:0.10, T:0.42
Consensus pattern (32 bp):
ATATTGTTATCATTTCAAAAAATGAAAATGTG
Found at i:92538487 original size:8 final size:8
Alignment explanation
Indices: 92538448--92538495 Score: 59
Period size: 8 Copynumber: 6.5 Consensus size: 8
92538438 TTTATCAATT
92538448 TAAAACCC
1 TAAAACCC
92538456 -AAAACCC
1 TAAAACCC
92538463 T--AACCC
1 TAAAACCC
92538469 T-AAACCC
1 TAAAACCC
*
92538476 TAAAACCT
1 TAAAACCC
92538484 TAAAACCC
1 TAAAACCC
92538492 TAAA
1 TAAA
92538496 CAACTAGAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
6 6 0.17
7 13 0.37
8 16 0.46
ACGTcount: A:0.50, C:0.35, G:0.00, T:0.15
Consensus pattern (8 bp):
TAAAACCC
Found at i:92545515 original size:6 final size:6
Alignment explanation
Indices: 92545499--92545538 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
92545489 CTTGGTTATT
* * *
92545499 GTCTTC TTCTTC GTCTTC GTCGTC GTCTTC GTCATC GTCT
1 GTCTTC GTCTTC GTCTTC GTCTTC GTCTTC GTCTTC GTCT
92545539 GGGCTTTCTT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.03, C:0.33, G:0.17, T:0.47
Consensus pattern (6 bp):
GTCTTC
Found at i:92552641 original size:20 final size:20
Alignment explanation
Indices: 92552605--92552642 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
92552595 GACTAAACCG
*
92552605 AAAACTTTAGAACTTTTTAC
1 AAAACTTTAGAAATTTTTAC
92552625 AAAAC-TTAGAAAATTTTT
1 AAAACTTTAG-AAATTTTT
92552643 CACTAAACAG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.45, C:0.11, G:0.05, T:0.39
Consensus pattern (20 bp):
AAAACTTTAGAAATTTTTAC
Found at i:92561159 original size:16 final size:17
Alignment explanation
Indices: 92561121--92561159 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
92561111 TAAGTAAATA
92561121 ATATT-ATATTATAATT
1 ATATTAATATTATAATT
92561137 ATATTAATATTATAA-T
1 ATATTAATATTATAATT
92561153 ATATTAA
1 ATATTAA
92561160 GTAAATAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATATTAATATTATAATT
Found at i:92569179 original size:59 final size:60
Alignment explanation
Indices: 92569113--92569250 Score: 165
Period size: 60 Copynumber: 2.3 Consensus size: 60
92569103 CCAACTGTGT
* * *
92569113 TGATATGGGCAAGCCCCAATATA-TCTCA-ACTTGTATA-GGGTTACGGCCCAGATTGATAC
1 TGATATGGGCAAGGCCCAATATACTCTCATAC-TGTA-AGGGGCTACGGCCCAGATTAATAC
* * * *
92569172 TGATATGGGCTAGGCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTAATAT
1 TGATATGGGCAAGGCCCAATATACTCTCATACTGTAAGGGGCTACGGCCCAGATTAATAC
92569232 TGATATGGGCTAAGGCCCA
1 TGATATGGGC-AAGGCCCA
92569251 GTTAACACTG
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
59 22 0.33
60 36 0.54
61 9 0.13
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (60 bp):
TGATATGGGCAAGGCCCAATATACTCTCATACTGTAAGGGGCTACGGCCCAGATTAATAC
Found at i:92571888 original size:6 final size:6
Alignment explanation
Indices: 92571881--92571915 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
92571871 ATAACGGTAG
* *
92571881 CAGTAG CAGTAG CAGTAA CAGTAA CAGTAA CAGTA
1 CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTA
92571916 TTCAACACAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.43, C:0.17, G:0.23, T:0.17
Consensus pattern (6 bp):
CAGTAA
Found at i:92571894 original size:12 final size:12
Alignment explanation
Indices: 92571872--92571915 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 12
92571862 TAGTAATCAA
*
92571872 TAACGGTAGCAG
1 TAACAGTAGCAG
*
92571884 TAGCAGTAGCAG
1 TAACAGTAGCAG
*
92571896 TAACAGTAACAG
1 TAACAGTAGCAG
92571908 TAACAGTA
1 TAACAGTA
92571916 TTCAACACAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.41, C:0.16, G:0.25, T:0.18
Consensus pattern (12 bp):
TAACAGTAGCAG
Found at i:92571946 original size:45 final size:45
Alignment explanation
Indices: 92571895--92571999 Score: 149
Period size: 45 Copynumber: 2.3 Consensus size: 45
92571885 AGCAGTAGCA
* *
92571895 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTACT-GAATCT
1 GTAACAGTAACAGTAACAATATTCAACACACAAAGT-CTCGAATCG
* * *
92571940 GTAACAGTAACGGTAACAATATTCGACACACAAAGTGTCGAATCG
1 GTAACAGTAACAGTAACAATATTCAACACACAAAGTCTCGAATCG
92571985 GTAACAGTAACAGTA
1 GTAACAGTAACAGTA
92572000 GTCGGCACCA
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
44 1 0.02
45 52 0.98
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.21
Consensus pattern (45 bp):
GTAACAGTAACAGTAACAATATTCAACACACAAAGTCTCGAATCG
Found at i:92573193 original size:3 final size:3
Alignment explanation
Indices: 92573185--92573210 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
92573175 TATTTAACAT
92573185 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
92573211 TCTTTTACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:92574120 original size:15 final size:15
Alignment explanation
Indices: 92574100--92574129 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
92574090 TTCAATATTA
*
92574100 TGTCTTTTGTATTTT
1 TGTCTTTTATATTTT
92574115 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
92574130 GCATGTATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.07, G:0.10, T:0.73
Consensus pattern (15 bp):
TGTCTTTTATATTTT
Found at i:92576596 original size:5 final size:5
Alignment explanation
Indices: 92576581--92576627 Score: 67
Period size: 5 Copynumber: 9.2 Consensus size: 5
92576571 AGTGGAAAAG
* *
92576581 TGAATT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT GGAAT GGAAT T
1 TGAA-T TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT T
92576628 ATGATTAATT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
5 35 0.90
6 4 0.10
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.38
Consensus pattern (5 bp):
TGAAT
Found at i:92577102 original size:45 final size:45
Alignment explanation
Indices: 92577036--92577275 Score: 372
Period size: 45 Copynumber: 5.3 Consensus size: 45
92577026 CTGTTACCGC
92577036 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
1 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* *
92577081 TACTACTACTGTTACCGATTCGGCAGTTTGTGTGTCGAATATTGT
1 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
*
92577126 TACTGCTACTGTTACCGATTCGGCACTGTGTGTGTCGAATATTGT
1 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* *
92577171 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
1 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* * * * * *
92577216 TACTGTTACCGTTATCGATTCAGCACTTTGTGTGTTGAATACTGT
1 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
*
92577261 TACTGTTACTGTTAC
1 TACTGCTACTGTTAC
92577276 TGTTCCGGAT
Statistics
Matches: 181, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 181 1.00
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.40
Consensus pattern (45 bp):
TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
Found at i:92577266 original size:6 final size:6
Alignment explanation
Indices: 92577255--92577279 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
92577245 GTGTGTTGAA
92577255 TACTGT TACTGT TACTGT TACTGT T
1 TACTGT TACTGT TACTGT TACTGT T
92577280 CCGGATTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (6 bp):
TACTGT
Found at i:92577325 original size:47 final size:44
Alignment explanation
Indices: 92577267--92577362 Score: 129
Period size: 47 Copynumber: 2.1 Consensus size: 44
92577257 CTGTTACTGT
* * *
92577267 TACTGTTACTGTTCCGGATTTGTTCCGATGAGGTACTTTGTGTACCG
1 TACTGTTACTGTTCCGGATTTG-GCCGATGAGGCACTATGTGT--CG
*
92577314 TACTGTTACTGTTCCGGCTTTGGCCGATGAGGCACTATGTGTCG
1 TACTGTTACTGTTCCGGATTTGGCCGATGAGGCACTATGTGTCG
92577358 TACTG
1 TACTG
92577363 GTGTGTTGGT
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
44 7 0.16
46 17 0.38
47 21 0.47
ACGTcount: A:0.15, C:0.21, G:0.27, T:0.38
Consensus pattern (44 bp):
TACTGTTACTGTTCCGGATTTGGCCGATGAGGCACTATGTGTCG
Found at i:92577464 original size:18 final size:18
Alignment explanation
Indices: 92577443--92577633 Score: 142
Period size: 18 Copynumber: 10.6 Consensus size: 18
92577433 TAACTGATTA
92577443 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
* * *
92577461 TTACCGGATAATTGACTA
1 TTACTGAATAATTGACTG
*
92577479 TTACTGGAT-ATTAGACTG
1 TTACTGAATAATT-GACTG
* * *
92577497 TTACTGAATAACTGAATA
1 TTACTGAATAATTGACTG
* *
92577515 TTATTGAATAATTGA-TCA
1 TTACTGAATAATTGACT-G
*
92577533 TTACTGAATAATTGATTG
1 TTACTGAATAATTGACTG
*
92577551 TCACTGAATGAA-TGACTG
1 TTACTGAAT-AATTGACTG
* *
92577569 CTACTGAATAACTT-AATAG
1 TTACTGAATAA-TTGACT-G
*
92577588 TTACTGAAT-ATCTGA-TT
1 TTACTGAATAAT-TGACTG
92577605 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
* *
92577623 ATACTGGATAA
1 TTACTGAATAA
92577634 CAGATCAATT
Statistics
Matches: 138, Mismatches: 23, Indels: 24
0.75 0.12 0.13
Matches are distributed among these distances:
17 19 0.14
18 103 0.75
19 16 0.12
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.37
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:92577496 original size:36 final size:36
Alignment explanation
Indices: 92577432--92577529 Score: 117
Period size: 36 Copynumber: 2.7 Consensus size: 36
92577422 AAGGTATAAA
*
92577432 ATAACTGATTATTACTGAATAATTGACTGTTACCGG
1 ATAACTGACTATTACTGAATAATTGACTGTTACCGG
* * * *
92577468 ATAATTGACTATTACTGGAT-ATTAGACTGTTACTGA
1 ATAACTGACTATTACTGAATAATT-GACTGTTACCGG
* *
92577504 ATAACTGAATATTATTGAATAATTGA
1 ATAACTGACTATTACTGAATAATTGA
92577530 TCATTACTGA
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
35 3 0.06
36 45 0.88
37 3 0.06
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (36 bp):
ATAACTGACTATTACTGAATAATTGACTGTTACCGG
Found at i:92577502 original size:54 final size:51
Alignment explanation
Indices: 92577443--92577633 Score: 168
Period size: 54 Copynumber: 3.6 Consensus size: 51
92577433 TAACTGATTA
* * *
92577443 TTACTGAATAATTGACTGTTACCGGATAATTGACTATTACTGGATATTAGACTG
1 TTACTGAATAATTGACTGTTACTGAATAATTGA-TATTACTGAATATT-GA-TG
* * * *
92577497 TTACTGAATAACTGAATATTATTGAATAATTGATCATTACTGAATAATTGATTG
1 TTACTGAATAATTGACTGTTACTGAATAATTGAT-ATTACTGAAT-ATTGA-TG
* * * *
92577551 TCACTGAATGAA-TGACTGCTACTGAATAACTTAATAGTTACTGAATATCTGATT
1 TTACTGAAT-AATTGACTGTTACTGAATAA-TTGATA-TTACTGAATAT-TGATG
* *
92577605 TTACTGAATAATTGACTGATACTGGATAA
1 TTACTGAATAATTGACTGTTACTGAATAA
92577634 CAGATCAATT
Statistics
Matches: 112, Mismatches: 18, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
53 3 0.03
54 88 0.79
55 21 0.19
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.37
Consensus pattern (51 bp):
TTACTGAATAATTGACTGTTACTGAATAATTGATATTACTGAATATTGATG
Found at i:92577568 original size:72 final size:72
Alignment explanation
Indices: 92577431--92577621 Score: 201
Period size: 72 Copynumber: 2.7 Consensus size: 72
92577421 AAAGGTATAA
* * * * * * *
92577431 AATAACTGATTATTACTGAATAATTGA-CTGTTACCGGATAATTGACTATTACTGGATATTAGAC
1 AATAACTGAATATTACTGAATAATTGATC-ATTACTGAATAATTGACTATCACTGAATAATAGAC
*
92577495 TGTTACTG
65 TGCTACTG
* * *
92577503 AATAACTGAATATTATTGAATAATTGATCATTACTGAATAATTGATTGTCACTGAATGAAT-GAC
1 AATAACTGAATATTACTGAATAATTGATCATTACTGAATAATTGACTATCACTGAAT-AATAGAC
92577567 TGCTACTG
65 TGCTACTG
* *
92577575 AATAACTTAATAGTTACTGAAT-ATCTGAT-TTTACTGAATAATTGACT
1 AATAACTGAATA-TTACTGAATAAT-TGATCATTACTGAATAATTGACT
92577622 GATACTGGAT
Statistics
Matches: 100, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
72 85 0.85
73 15 0.15
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.38
Consensus pattern (72 bp):
AATAACTGAATATTACTGAATAATTGATCATTACTGAATAATTGACTATCACTGAATAATAGACT
GCTACTG
Found at i:92577676 original size:18 final size:18
Alignment explanation
Indices: 92577651--92577726 Score: 73
Period size: 18 Copynumber: 4.3 Consensus size: 18
92577641 ATTGATCGAA
*
92577651 ACTGAATAACTGGTTATT
1 ACTGAATAACTGATTATT
* * *
92577669 ATTGAATAATTGATTGTT
1 ACTGAATAACTGATTATT
* *
92577687 ACTGAATAACTGACTGTT
1 ACTGAATAACTGATTATT
* *
92577705 ACTGAATAAATAATTATT
1 ACTGAATAACTGATTATT
92577723 -CTGA
1 ACTGA
92577727 GTGTTAATGA
Statistics
Matches: 47, Mismatches: 11, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
17 4 0.09
18 43 0.91
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.39
Consensus pattern (18 bp):
ACTGAATAACTGATTATT
Found at i:92580504 original size:74 final size:74
Alignment explanation
Indices: 92580426--92580574 Score: 271
Period size: 74 Copynumber: 2.0 Consensus size: 74
92580416 TCTTAATTGA
*
92580426 TTGATTATTTTTATTATAAGTTCATTTTAAATTTCTCTAATGAAAAATGTAATGCTCTATATTCG
1 TTGATTATTTTTATTATAAGTTCATCTTAAATTTCTCTAATGAAAAATGTAATGCTCTATATTCG
92580491 ATTGTATTT
66 ATTGTATTT
* *
92580500 TTGATTATTTTTATTATAAGTTCATCTTGAATTTCTCTAATGAAAAATGTGATGCTCTATATTCG
1 TTGATTATTTTTATTATAAGTTCATCTTAAATTTCTCTAATGAAAAATGTAATGCTCTATATTCG
92580565 ATTGTATTT
66 ATTGTATTT
92580574 T
1 T
92580575 GAGTAGGGTA
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 72 1.00
ACGTcount: A:0.30, C:0.09, G:0.11, T:0.51
Consensus pattern (74 bp):
TTGATTATTTTTATTATAAGTTCATCTTAAATTTCTCTAATGAAAAATGTAATGCTCTATATTCG
ATTGTATTT
Found at i:92582873 original size:9 final size:9
Alignment explanation
Indices: 92582859--92582898 Score: 64
Period size: 9 Copynumber: 4.6 Consensus size: 9
92582849 CAAAATTATT
92582859 ATTTTATAA
1 ATTTTATAA
92582868 ATTTTATAA
1 ATTTTATAA
92582877 ATTTTATAA
1 ATTTTATAA
*
92582886 ATTCT-TAA
1 ATTTTATAA
92582894 ATTTT
1 ATTTT
92582899 TTATATATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
8 7 0.24
9 22 0.76
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (9 bp):
ATTTTATAA
Found at i:92582902 original size:19 final size:17
Alignment explanation
Indices: 92582859--92582938 Score: 65
Period size: 18 Copynumber: 4.5 Consensus size: 17
92582849 CAAAATTATT
92582859 ATTTTATAAATTTTATAA
1 ATTTTATAAATTTTA-AA
92582877 ATTTTATAAATTCTTAAA
1 ATTTTATAAATT-TTAAA
* *
92582895 TTTTTTATATATTTTTAAA
1 -ATTTTATA-AATTTTAAA
*
92582914 A--ATATAAATTTTGAAA
1 ATTTTATAAATTTT-AAA
*
92582930 TTTTTATAA
1 ATTTTATAA
92582939 TTATTTTTAA
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
15 5 0.10
16 7 0.14
18 19 0.39
19 15 0.31
20 3 0.06
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (17 bp):
ATTTTATAAATTTTAAA
Found at i:92582920 original size:35 final size:36
Alignment explanation
Indices: 92582881--92582948 Score: 97
Period size: 35 Copynumber: 1.9 Consensus size: 36
92582871 TTATAAATTT
92582881 TATAAATTCTT-AAATTTTT-T-ATATATTTTTAAAAA
1 TATAAATT-TTGAAATTTTTATAAT-TATTTTTAAAAA
92582916 TATAAATTTTGAAATTTTTATAATTATTTTTAA
1 TATAAATTTTGAAATTTTTATAATTATTTTTAA
92582949 TTTTTAATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
34 2 0.07
35 16 0.53
36 10 0.33
37 2 0.07
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (36 bp):
TATAAATTTTGAAATTTTTATAATTATTTTTAAAAA
Found at i:92582922 original size:44 final size:43
Alignment explanation
Indices: 92582872--92582955 Score: 109
Period size: 43 Copynumber: 1.9 Consensus size: 43
92582862 TTATAAATTT
*
92582872 TATAAATTTTATAAATTCTTA-AATT-TTTTATATATTTTTAAAAA
1 TATAAATTTT-GAAATTCTTATAATTATTTT-TA-ATTTTTAAAAA
*
92582916 TATAAATTTTGAAATTTTTATAATTATTTTTAATTTTTAA
1 TATAAATTTTGAAATTCTTATAATTATTTTTAATTTTTAA
92582956 TTTTTTTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
43 16 0.44
44 16 0.44
45 4 0.11
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.57
Consensus pattern (43 bp):
TATAAATTTTGAAATTCTTATAATTATTTTTAATTTTTAAAAA
Found at i:92582940 original size:9 final size:9
Alignment explanation
Indices: 92582860--92582954 Score: 54
Period size: 9 Copynumber: 10.6 Consensus size: 9
92582850 AAAATTATTA
*
92582860 TTTTATAAA
1 TTTTATAAT
*
92582869 TTTTATAAA
1 TTTTATAAT
92582878 TTTTATAAAT
1 TTTTAT-AAT
*
92582888 TCTTA-AATT
1 TTTTATAA-T
92582897 TTTTATATAT
1 TTTTATA-AT
*
92582907 TTTTA-AAA
1 TTTTATAAT
* *
92582915 ATATA-AAT
1 TTTTATAAT
*
92582923 TTTGA-AAT
1 TTTTATAAT
92582931 TTTTATAAT
1 TTTTATAAT
*
92582940 TATTTTTAAT
1 T-TTTATAAT
92582950 TTTTA
1 TTTTA
92582955 ATTTTTTTTA
Statistics
Matches: 67, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
8 17 0.25
9 28 0.42
10 21 0.31
11 1 0.01
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (9 bp):
TTTTATAAT
Found at i:92582950 original size:27 final size:28
Alignment explanation
Indices: 92582920--92582980 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 28
92582910 TAAAAATATA
92582920 AATTTTGAAATTTTTATA-ATTATTTTT
1 AATTTTGAAATTTTTATATATTATTTTT
* * * * *
92582947 AATTTTTAATTTTTTTTATTTTTTTTTT
1 AATTTTGAAATTTTTATATATTATTTTT
92582975 AATTTT
1 AATTTT
92582981 TGTTAAGAGA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 15 0.54
28 13 0.46
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (28 bp):
AATTTTGAAATTTTTATATATTATTTTT
Found at i:92582956 original size:17 final size:16
Alignment explanation
Indices: 92582931--92582969 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 16
92582921 ATTTTGAAAT
92582931 TTTTATAATTATTTTTAA
1 TTTT-TAATT-TTTTTAA
*
92582949 TTTTTAATTTTTTTTA
1 TTTTTAATTTTTTTAA
92582965 TTTTT
1 TTTTT
92582970 TTTTTAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 11 0.55
17 5 0.25
18 4 0.20
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTTAATTTTTTTAA
Found at i:92582963 original size:11 final size:11
Alignment explanation
Indices: 92582949--92582981 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
92582939 TTATTTTTAA
92582949 TTTTTAA-TTT
1 TTTTTAATTTT
*
92582959 TTTTTATTTTT
1 TTTTTAATTTT
92582970 TTTTTAATTTT
1 TTTTTAATTTT
92582981 T
1 T
92582982 GTTAAGAGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
10 6 0.30
11 14 0.70
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTAATTTT
Found at i:92582970 original size:17 final size:17
Alignment explanation
Indices: 92582929--92582970 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
92582919 AAATTTTGAA
92582929 ATTTTTATAATTATTTTT
1 ATTTTT-TAATTATTTTT
* *
92582947 AATTTTTAATTTTTTTT
1 ATTTTTTAATTATTTTT
92582964 ATTTTTT
1 ATTTTTT
92582971 TTTTAATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 16 0.76
18 5 0.24
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (17 bp):
ATTTTTTAATTATTTTT
Found at i:92582975 original size:21 final size:22
Alignment explanation
Indices: 92582939--92582981 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
92582929 ATTTTTATAA
92582939 TTATTTTTAATTTTTAATTTTTT
1 TTATTTTT-ATTTTTAATTTTTT
92582962 TTATTTTT-TTTTTAATTTTT
1 TTATTTTTATTTTTAATTTTT
92582982 GTTAAGAGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 12 0.60
23 8 0.40
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (22 bp):
TTATTTTTATTTTTAATTTTTT
Found at i:92586415 original size:3 final size:3
Alignment explanation
Indices: 92586407--92586433 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
92586397 TGTTACACGT
92586407 TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC
92586434 GAGATGGTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:92588539 original size:26 final size:26
Alignment explanation
Indices: 92588482--92588531 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
92588472 ATTGTTTTCT
92588482 TGTCTTCTGCTTATAATAGCTAAGCG
1 TGTCTTCTGCTTATAATAGCTAAGCG
92588508 TGTCTTCTGCTTATAATAGCTAAG
1 TGTCTTCTGCTTATAATAGCTAAG
92588532 TGCTTCTTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.40
Consensus pattern (26 bp):
TGTCTTCTGCTTATAATAGCTAAGCG
Found at i:92590704 original size:14 final size:14
Alignment explanation
Indices: 92590681--92590732 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
92590671 TGACATGGTA
*
92590681 AAACCCTAAATCCT
1 AAACCTTAAATCCT
*
92590695 AAACCTTAAATCTT
1 AAACCTTAAATCCT
* *
92590709 AAAACTCTAAACCCT
1 AAACCT-TAAATCCT
92590724 AAAACCTTA
1 -AAACCTTA
92590733 GGCACTAAAC
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
14 17 0.57
15 8 0.27
16 5 0.17
ACGTcount: A:0.46, C:0.29, G:0.00, T:0.25
Consensus pattern (14 bp):
AAACCTTAAATCCT
Found at i:92590713 original size:15 final size:15
Alignment explanation
Indices: 92590679--92590732 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
92590669 ACTGACATGG
*
92590679 TAAAACCCTAAATCC
1 TAAAACCTTAAATCC
*
92590694 T-AAACCTTAAATCT
1 TAAAACCTTAAATCC
*
92590708 TAAAA-CTCTAAACCC
1 TAAAACCT-TAAATCC
92590723 TAAAACCTTA
1 TAAAACCTTA
92590733 GGCACTAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
14 14 0.44
15 16 0.50
16 2 0.06
ACGTcount: A:0.46, C:0.28, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAACCTTAAATCC
Found at i:92591345 original size:21 final size:19
Alignment explanation
Indices: 92591319--92591366 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 19
92591309 TTTAATAATA
*
92591319 TAATATATAATAAATATATTT
1 TAATATATAA-AAAAATA-TT
*
92591340 TAATATTTTAAAAAAATATT
1 TAATA-TATAAAAAAATATT
92591360 TAATATA
1 TAATATA
92591367 AAATTCTAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 1 0.04
20 7 0.30
21 11 0.48
22 4 0.17
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
TAATATATAAAAAAATATT
Found at i:92591445 original size:6 final size:6
Alignment explanation
Indices: 92591434--92591458 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
92591424 AATTATTTAT
92591434 ATATTA ATATTA ATATTA ATATTA A
1 ATATTA ATATTA ATATTA ATATTA A
92591459 ATATATACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
ATATTA
Found at i:92591884 original size:16 final size:17
Alignment explanation
Indices: 92591851--92591895 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 17
92591841 TACTATTACT
*
92591851 AATT-TAAAATTTTATA
1 AATTATAAAAATTTATA
92591867 AATTATAAAAATTT-TA
1 AATTATAAAAATTTATA
92591883 AA-T-TAAAAATTTA
1 AATTATAAAAATTTA
92591896 CTATTTTAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 9 0.35
15 1 0.04
16 8 0.31
17 8 0.31
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AATTATAAAAATTTATA
Found at i:92605281 original size:20 final size:20
Alignment explanation
Indices: 92605242--92605292 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
92605232 CGTGTTTGCT
* *
92605242 TTCCGTTTAGCTCTTATGAGC
1 TTCCG-TTAACTCATATGAGC
*
92605263 TTCCGTTAACTCATATGAGT
1 TTCCGTTAACTCATATGAGC
*
92605283 TTCAGTTAAC
1 TTCCGTTAAC
92605293 CCTTTTGGGG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 21 0.81
21 5 0.19
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.41
Consensus pattern (20 bp):
TTCCGTTAACTCATATGAGC
Found at i:92605369 original size:39 final size:39
Alignment explanation
Indices: 92605323--92605423 Score: 175
Period size: 39 Copynumber: 2.6 Consensus size: 39
92605313 GCTCTGATGA
*
92605323 GCTTCAGTTAGCCTTCGGGCTTCTGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
*
92605362 GCTTCAGTTAGCCTTCGGGCTACCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
*
92605401 GCTTCAGTTAGACTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
92605424 AGATGATGAT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 58 1.00
ACGTcount: A:0.14, C:0.25, G:0.24, T:0.38
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
Found at i:92605424 original size:18 final size:18
Alignment explanation
Indices: 92605323--92605425 Score: 71
Period size: 18 Copynumber: 5.4 Consensus size: 18
92605313 GCTCTGATGA
*
92605323 GCTTCAGTTAGCCTTCGG
1 GCTTCAGTTAGACTTCGG
* * *
92605341 GCTTCTGTTTAGCACTTATGT
1 GCTTCAG-TTAG-ACTT-CGG
*
92605362 GCTTCAGTTAGCCTTCGG
1 GCTTCAGTTAGACTTCGG
* * * *
92605380 GCTACCGTTTAGCACTTATGT
1 GCTTCAG-TTAG-ACTT-CGG
92605401 GCTTCAGTTAGACTTCGG
1 GCTTCAGTTAGACTTCGG
92605419 GCTTCAG
1 GCTTCAG
92605426 ATGATGATGT
Statistics
Matches: 62, Mismatches: 17, Indels: 12
0.68 0.19 0.13
Matches are distributed among these distances:
18 20 0.32
19 15 0.24
20 14 0.23
21 13 0.21
ACGTcount: A:0.15, C:0.24, G:0.24, T:0.37
Consensus pattern (18 bp):
GCTTCAGTTAGACTTCGG
Found at i:92607209 original size:3 final size:3
Alignment explanation
Indices: 92607201--92607265 Score: 51
Period size: 3 Copynumber: 21.7 Consensus size: 3
92607191 GGGATTTAAA
* * * * * * *
92607201 AAT AAT AAT ATT AAT AAT GAT TAT AGT AAT ATT AAT AAT AAA AAT AAC
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
92607249 AAT AAT ACA- AAT AAT AA
1 AAT AAT A-AT AAT AAT AA
92607266 ATATTCTAAA
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
2 1 0.02
3 45 0.96
4 1 0.02
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:92607252 original size:21 final size:21
Alignment explanation
Indices: 92607197--92607252 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
92607187 AAGAGGGATT
92607197 TAAAAATAATAATATTAATAA
1 TAAAAATAATAATATTAATAA
* ** *
92607218 TGATTATAGTAATATTAATAA
1 TAAAAATAATAATATTAATAA
*
92607239 TAAAAATAACAATA
1 TAAAAATAATAATA
92607253 ATACAAATAA
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.34
Consensus pattern (21 bp):
TAAAAATAATAATATTAATAA
Found at i:92607438 original size:3 final size:3
Alignment explanation
Indices: 92607432--92607506 Score: 64
Period size: 3 Copynumber: 25.7 Consensus size: 3
92607422 AAAAGAAAAT
* * * * * *
92607432 ATA ATA ATG ATA ATA ATA ATA GTA AT- ACA ATA GTA ATA GTA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
92607479 ATA ATA ATA TTA ATA ATA AAA AT- ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
92607507 TAATTAATTT
Statistics
Matches: 54, Mismatches: 16, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
2 3 0.06
3 51 0.94
ACGTcount: A:0.59, C:0.01, G:0.07, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:92607449 original size:12 final size:12
Alignment explanation
Indices: 92607432--92607497 Score: 82
Period size: 12 Copynumber: 5.6 Consensus size: 12
92607422 AAAAGAAAAT
92607432 ATAATAAT-GATA
1 ATAATAATAG-TA
92607444 ATAATAATAGTA
1 ATAATAATAGTA
*
92607456 AT-ACAATAGTA
1 ATAATAATAGTA
*
92607467 ATAGTAATAGTA
1 ATAATAATAGTA
*
92607479 ATAATAATATTA
1 ATAATAATAGTA
92607491 ATAATAA
1 ATAATAA
92607498 AAATATAATT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
11 10 0.21
12 36 0.77
13 1 0.02
ACGTcount: A:0.58, C:0.02, G:0.08, T:0.33
Consensus pattern (12 bp):
ATAATAATAGTA
Found at i:92609169 original size:89 final size:87
Alignment explanation
Indices: 92609073--92609349 Score: 220
Period size: 89 Copynumber: 3.1 Consensus size: 87
92609063 CCAATGTAAT
* *
92609073 TTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCTGCTAGAACTTCAAGAAGATAAGAATTGAT
1 TTCAGGGAGAAGAGATTTGTAG-TTCAATCTACTCTACTAGAACTTCAAGAAGATAAGAATTG-T
92609138 AATTTCAATATGCTCCACAGCAAC
64 AATTTCAATATGCTCCACAGCAAC
* ** * * * *
92609162 TTCAGGGAGATA-ATACTTGTGTA-TTTTATCCTGCTTTACTACAACTTCAA-AGAGATAAGGAT
1 TTCAGGGAGA-AGAGA-TT-TGTAGTTCAAT-CTACTCTACTAGAACTTCAAGA-AGATAAGAAT
*** * * *
92609224 TGTGGCTTCGATATGCTCCA-ATGTAAT
61 TGTAATTTCAATATGCTCCACA-GCAAC
* * * * * *
92609251 TTTAGGGAGAAGAGATTTGTAGTTTCAATCTACTCCACTGGAACTTCAAGGAGGTTAGAATTGGT
1 TTCAGGGAGAAGAGATTTGTAG-TTCAATCTACTCTACTAGAACTTCAAGAAGATAAGAATT-GT
** *
92609316 AATTTCAACCTGCTCCACTGCAAC
64 AATTTCAATATGCTCCACAGCAAC
92609340 TTCAGGGAGA
1 TTCAGGGAGA
92609350 TAAGGTTGAT
Statistics
Matches: 139, Mismatches: 37, Indels: 24
0.69 0.19 0.12
Matches are distributed among these distances:
87 4 0.03
88 27 0.19
89 74 0.53
90 30 0.22
91 4 0.03
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (87 bp):
TTCAGGGAGAAGAGATTTGTAGTTCAATCTACTCTACTAGAACTTCAAGAAGATAAGAATTGTAA
TTTCAATATGCTCCACAGCAAC
Found at i:92609209 original size:178 final size:178
Alignment explanation
Indices: 92609000--92609352 Score: 499
Period size: 178 Copynumber: 2.0 Consensus size: 178
92608990 GAGATAAGGT
* * * * *
92609000 TTGTGTACTTTATCTTGCTCTACTGCAACTTCAGAGTGATAAGAATTGTGGCTCCGATCTACTCC
1 TTGTGTACTTTATCCTGCTCTACTACAACTTCAAAGAGATAAGAATTGTGGCTCCGATATACTCC
* **
92609065 AATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCTGCTAGAACTTCAAGAAGATAA
66 AATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCAATCTACTCCACTAGAACTTCAAGAAGATAA
*
92609130 GAATTGATAATTTCAATATGCTCCACAGCAACTTCAGGGAGATAATAC
131 GAATTGATAATTTCAACATGCTCCACAGCAACTTCAGGGAGATAATAC
* * * * *
92609178 TTGTGTATTTTATCCTGCTTTACTACAACTTCAAAGAGATAAGGATTGTGGCTTCGATATGCTCC
1 TTGTGTACTTTATCCTGCTCTACTACAACTTCAAAGAGATAAGAATTGTGGCTCCGATATACTCC
* * * * * *
92609243 AATGTAATTTTAGGGAGAAGAGATTTGTAGTTTCAATCTACTCCACTGGAACTTCAAGGAGGTTA
66 AATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCAATCTACTCCACTAGAACTTCAAGAAGATAA
* * *
92609308 GAATTGGTAATTTCAACCTGCTCCACTGCAACTTCAGGGAGATAA
131 GAATTGATAATTTCAACATGCTCCACAGCAACTTCAGGGAGATAA
92609353 GGTTGATGGC
Statistics
Matches: 152, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
178 152 1.00
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (178 bp):
TTGTGTACTTTATCCTGCTCTACTACAACTTCAAAGAGATAAGAATTGTGGCTCCGATATACTCC
AATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCAATCTACTCCACTAGAACTTCAAGAAGATAA
GAATTGATAATTTCAACATGCTCCACAGCAACTTCAGGGAGATAATAC
Found at i:92609536 original size:143 final size:143
Alignment explanation
Indices: 92609338--92609606 Score: 364
Period size: 143 Copynumber: 1.9 Consensus size: 143
92609328 CTCCACTGCA
** * *
92609338 ACTTCAGGGAGATAAGGTTGATGGCTTAAATCTGCTCCACTGCAACTTCAGGAAGATAAGAT-TC
1 ACTTCAGGGAGATAAGACTGATGGATTAAATCTGCTCCACTGCAACTTCAAGAAGATAAGATCT-
** *
92609402 GTTATAATTTGTAACTTTAATCTATTCC-CTTGCAATAT-CAGGAAAATAAGATTCGCTGTCTTC
65 GCCATAATTTGTAACTTCAATCTATTCCAC-TGCAAT-TCCAGGAAAATAAGATTCGCTGTCTTC
92609465 AGTCTGCTCTGTTGCT
128 AGTCTGCTCTGTTGCT
* **
92609481 ACTTCAGGGAGATAAGACTGGTGGATTTGATCTGCTCCACTGCAACTTCAAGAAGATAAGATCTG
1 ACTTCAGGGAGATAAGACTGATGGATTAAATCTGCTCCACTGCAACTTCAAGAAGATAAGATCTG
* * * *
92609546 CCATTATTTGTAGCTTCAATCTATTCCACTGCAATTCCAGGGAAATAAGATTCGCTTTCTT
66 CCATAATTTGTAACTTCAATCTATTCCACTGCAATTCCAGGAAAATAAGATTCGCTGTCTT
92609607 GGACCTACTC
Statistics
Matches: 109, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
142 1 0.01
143 106 0.97
144 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (143 bp):
ACTTCAGGGAGATAAGACTGATGGATTAAATCTGCTCCACTGCAACTTCAAGAAGATAAGATCTG
CCATAATTTGTAACTTCAATCTATTCCACTGCAATTCCAGGAAAATAAGATTCGCTGTCTTCAGT
CTGCTCTGTTGCT
Found at i:92609628 original size:143 final size:144
Alignment explanation
Indices: 92609337--92609640 Score: 341
Period size: 143 Copynumber: 2.1 Consensus size: 144
92609327 GCTCCACTGC
** * *
92609337 AACTTCAGGGAGATAAGGTTGATGGCTTAAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTC
1 AACTTCAGGGAGATAAGACTGATGGATTAAATCTGCTCCACTGCAACTTCAAGAAGATAAGATTC
** *
92609402 GTTATAATTTGTAACTTTAATCTATTCCCTTGCAATATCAGGAAAATAAGATTCGCTGTCTTCAG
66 GCCATAATTTGTAACTTCAATCTATTCCCTTGCAATATCAGGAAAATAAGATTCGCTGTCTTCAG
* * ** *
92609467 TCTGCTCTGTTGCT
131 CCTACTCTACTGAT
* **
92609481 -ACTTCAGGGAGATAAGACTGGTGGATTTGATCTGCTCCACTGCAACTTCAAGAAGATAAGA-TC
1 AACTTCAGGGAGATAAGACTGATGGATTAAATCTGCTCCACTGCAACTTCAAGAAGATAAGATTC
* * * *
92609544 TGCCATTATTTGTAGCTTCAATCTATTCCAC-TGCAAT-TCCAGGGAAATAAGATTCGCTTTCTT
66 -GCCATAATTTGTAACTTCAATCTATTCC-CTTGCAATAT-CAGGAAAATAAGATTCGCTGTCTT
*
92609607 -GGACCTACTCTACT-AT
128 CAG-CCTACTCTACTGAT
*
92609623 AACTTCAAGGAGATAAGA
1 AACTTCAGGGAGATAAGA
92609641 TTTATAACTT
Statistics
Matches: 134, Mismatches: 21, Indels: 11
0.81 0.13 0.07
Matches are distributed among these distances:
142 5 0.04
143 128 0.96
144 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.32
Consensus pattern (144 bp):
AACTTCAGGGAGATAAGACTGATGGATTAAATCTGCTCCACTGCAACTTCAAGAAGATAAGATTC
GCCATAATTTGTAACTTCAATCTATTCCCTTGCAATATCAGGAAAATAAGATTCGCTGTCTTCAG
CCTACTCTACTGAT
Found at i:92609712 original size:44 final size:44
Alignment explanation
Indices: 92609624--92609731 Score: 119
Period size: 44 Copynumber: 2.5 Consensus size: 44
92609614 CTCTACTATA
*
92609624 ACTTCA-AGGAGATAAGATTTATAACTTCAATATGCTCCGCTGCT
1 ACTTCAGA-GAGATAAGATTTATAACTTCAATATGCTCCACTGCT
* * * ** *
92609668 ACTTTAGAGAGATAAGATTTATGACTTCAATCTGCTTTATTGCT
1 ACTTCAGAGAGATAAGATTTATAACTTCAATATGCTCCACTGCT
* *
92609712 ACTTCAGGGAGATGAGATTT
1 ACTTCAGAGAGATAAGATTT
92609732 GTGGATTCAC
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
44 52 0.98
45 1 0.02
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.35
Consensus pattern (44 bp):
ACTTCAGAGAGATAAGATTTATAACTTCAATATGCTCCACTGCT
Found at i:92610674 original size:53 final size:53
Alignment explanation
Indices: 92610608--92610764 Score: 224
Period size: 53 Copynumber: 3.0 Consensus size: 53
92610598 GGAAGCATAG
* * *
92610608 CTCGAAATGAATAAATTAATCAAAGATAGCAAATGCAATAATAAGGAAATTAA
1 CTCGAAATGAATAAGTTAATCAAAGATAGAAAATGCAATAAGAAGGAAATTAA
* *
92610661 CTTGAAATGAATAAGTTAATCAAAGATAGAAAATGTAATAAGAAGGAAATTAA
1 CTCGAAATGAATAAGTTAATCAAAGATAGAAAATGCAATAAGAAGGAAATTAA
* * ** *
92610714 CTCGAAATAAATAAGTTAATTAAAGATAGAAAATATAATAAGAAGAAAATT
1 CTCGAAATGAATAAGTTAATCAAAGATAGAAAATGCAATAAGAAGGAAATT
92610765 GATTGGGAGT
Statistics
Matches: 94, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 94 1.00
ACGTcount: A:0.56, C:0.06, G:0.14, T:0.24
Consensus pattern (53 bp):
CTCGAAATGAATAAGTTAATCAAAGATAGAAAATGCAATAAGAAGGAAATTAA
Found at i:92615416 original size:5 final size:5
Alignment explanation
Indices: 92615408--92615432 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
92615398 ATGCAATCAT
92615408 AAACA AAACA AAACA AAACA AAACA
1 AAACA AAACA AAACA AAACA AAACA
92615433 CGTCAGTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.20, G:0.00, T:0.00
Consensus pattern (5 bp):
AAACA
Found at i:92616683 original size:3 final size:3
Alignment explanation
Indices: 92616675--92616739 Score: 51
Period size: 3 Copynumber: 21.7 Consensus size: 3
92616665 GGGATTTAAA
* * * * * * *
92616675 AAT AAT AAT ATT AAT AAT GAT GAT AGT AAT ATT AAT AAT AAA AAT AAC
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
92616723 AAT AAT ACA- AAT AAT AA
1 AAT AAT A-AT AAT AAT AA
92616740 ATATTCTAAA
Statistics
Matches: 48, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
2 1 0.02
3 46 0.96
4 1 0.02
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:92616726 original size:21 final size:21
Alignment explanation
Indices: 92616671--92616726 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
92616661 AAGAGGGATT
92616671 TAAAAATAATAATATTAATAA
1 TAAAAATAATAATATTAATAA
* ** *
92616692 TGATGATAGTAATATTAATAA
1 TAAAAATAATAATATTAATAA
*
92616713 TAAAAATAACAATA
1 TAAAAATAATAATA
92616727 ATACAAATAA
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (21 bp):
TAAAAATAATAATATTAATAA
Found at i:92616908 original size:3 final size:3
Alignment explanation
Indices: 92616902--92616979 Score: 61
Period size: 3 Copynumber: 26.7 Consensus size: 3
92616892 AAAAAAAAAT
* * * * * *
92616902 ATA ATA ATG ATA ATA ATA ATA GTA AT- ACA ATA GTA ATA GTA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
92616949 ATA ATA ATA ATG TTA ATA ATA AAA AT- ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
92616980 TAATTAATTT
Statistics
Matches: 55, Mismatches: 18, Indels: 4
0.71 0.23 0.05
Matches are distributed among these distances:
2 3 0.05
3 52 0.95
ACGTcount: A:0.58, C:0.01, G:0.08, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:92616993 original size:28 final size:26
Alignment explanation
Indices: 92616949--92617000 Score: 68
Period size: 28 Copynumber: 1.9 Consensus size: 26
92616939 AGTAATAGTA
*
92616949 ATAATAATAATGTTAATAATAAAAAT
1 ATAATAATAATGTTAATAACAAAAAT
*
92616975 ATAATTAATTAATTTTAATAACAAAA
1 ATAA-TAA-TAATGTTAATAACAAAA
92617001 TAGCAAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 4 0.18
27 3 0.14
28 15 0.68
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (26 bp):
ATAATAATAATGTTAATAACAAAAAT
Found at i:92621257 original size:14 final size:13
Alignment explanation
Indices: 92621238--92621285 Score: 55
Period size: 12 Copynumber: 3.8 Consensus size: 13
92621228 AAATAGAATA
92621238 TATTATTTTAATTT
1 TATTATTTT-ATTT
*
92621252 TATTA-TTTATTA
1 TATTATTTTATTT
92621264 T-TTATTTTATTT
1 TATTATTTTATTT
*
92621276 TATTAATTTA
1 TATTATTTTA
92621286 GGATTAGGCT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
11 3 0.10
12 11 0.38
13 10 0.34
14 5 0.17
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
TATTATTTTATTT
Found at i:92634655 original size:24 final size:24
Alignment explanation
Indices: 92634626--92634720 Score: 102
Period size: 24 Copynumber: 4.0 Consensus size: 24
92634616 TTGACTTCGG
92634626 CACTATGTGTGCGAATTTGAATGA
1 CACTATGTGTGCGAATTTGAATGA
* * *
92634650 CACTATGTGTGCGAAATTGTATGG
1 CACTATGTGTGCGAATTTGAATGA
* * *
92634674 CACTATGTGTGCGGACTTGTAT-A
1 CACTATGTGTGCGAATTTGAATGA
* *
92634697 GCACTATGTGTGCGGATTTAAATG
1 -CACTATGTGTGCGAATTTGAATG
92634721 TCAATACGTA
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
24 60 1.00
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (24 bp):
CACTATGTGTGCGAATTTGAATGA
Found at i:92649832 original size:3 final size:3
Alignment explanation
Indices: 92649824--92649856 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
92649814 CGGCTCTCTC
92649824 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
92649857 AATTCTAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:92655275 original size:27 final size:27
Alignment explanation
Indices: 92655241--92655295 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
92655231 GGTTAGAAAG
92655241 TAAGATTTTAATGTTTGGTTAATGGGA
1 TAAGATTTTAATGTTTGGTTAATGGGA
92655268 TAAGATTTTAATGTTTGGTTAATGGGA
1 TAAGATTTTAATGTTTGGTTAATGGGA
92655295 T
1 T
92655296 GTAAGACTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.00, G:0.25, T:0.45
Consensus pattern (27 bp):
TAAGATTTTAATGTTTGGTTAATGGGA
Found at i:92658756 original size:25 final size:25
Alignment explanation
Indices: 92658723--92658774 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
92658713 GTTATCTATT
*
92658723 AATATTTATATTAATACTAAATAAA
1 AATAATTATATTAATACTAAATAAA
*
92658748 AATAATTATATTAATATTAAATAAA
1 AATAATTATATTAATACTAAATAAA
92658773 AA
1 AA
92658775 ATAAAAAACC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (25 bp):
AATAATTATATTAATACTAAATAAA
Found at i:92660062 original size:10 final size:10
Alignment explanation
Indices: 92660047--92660106 Score: 70
Period size: 10 Copynumber: 6.0 Consensus size: 10
92660037 TAATTTTAGG
92660047 ATTTAT-TTT
1 ATTTATCTTT
92660056 CATTTATCTTT
1 -ATTTATCTTT
92660067 ATTTATCTTT
1 ATTTATCTTT
*
92660077 AATTATCTTT
1 ATTTATCTTT
*
92660087 AATTAT-TTGT
1 ATTTATCTT-T
92660097 ATTTATCTTT
1 ATTTATCTTT
92660107 TAGTATTTAA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.23, C:0.08, G:0.02, T:0.67
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:92667583 original size:24 final size:26
Alignment explanation
Indices: 92667556--92667608 Score: 74
Period size: 25 Copynumber: 2.1 Consensus size: 26
92667546 ACTGTTATAA
* *
92667556 AAAATTATA-AAATGCAAATTA-ATT
1 AAAATTATATAAATGAAAAATATATT
92667580 AAAATTATATAAATGAAAAATATATT
1 AAAATTATATAAATGAAAAATATATT
92667606 AAA
1 AAA
92667609 TAATATTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 9 0.36
25 10 0.40
26 6 0.24
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (26 bp):
AAAATTATATAAATGAAAAATATATT
Found at i:92667672 original size:18 final size:18
Alignment explanation
Indices: 92667604--92667678 Score: 50
Period size: 18 Copynumber: 4.3 Consensus size: 18
92667594 GAAAAATATA
*
92667604 TTAAATAATATTCAAAAA
1 TTAAATAATATTCAAAAT
*
92667622 TTAAA-ATTAATT--AAAT
1 TTAAATAAT-ATTCAAAAT
* **
92667638 TTACATAGATA-AAAAAAT
1 TTAAATA-ATATTCAAAAT
92667656 TTAAATAATATTCAAAAT
1 TTAAATAATATTCAAAAT
*
92667674 CTAAA
1 TTAAA
92667679 ATAAACCGTT
Statistics
Matches: 42, Mismatches: 9, Indels: 12
0.67 0.14 0.19
Matches are distributed among these distances:
16 7 0.17
17 7 0.17
18 28 0.67
ACGTcount: A:0.59, C:0.05, G:0.01, T:0.35
Consensus pattern (18 bp):
TTAAATAATATTCAAAAT
Found at i:92667679 original size:52 final size:54
Alignment explanation
Indices: 92667571--92667680 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
92667561 TATAAAATGC
* *
92667571 AAATTAATTAAAATTATATAAATGAAAAATATATTAAATAATATTCAAAAATTA
1 AAATTAATTAAAATTACATAAATGAAAAAAATATTAAATAATATTCAAAAATTA
* *
92667625 AAATTAATTAAATTTACATAGAT-AAAAAAAT-TTAAATAATATTC-AAAATCTA
1 AAATTAATTAAAATTACATAAATGAAAAAAATATTAAATAATATTCAAAAAT-TA
92667677 AAAT
1 AAAT
92667681 AAACCGTTAC
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
51 5 0.10
52 19 0.37
53 7 0.14
54 20 0.39
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.35
Consensus pattern (54 bp):
AAATTAATTAAAATTACATAAATGAAAAAAATATTAAATAATATTCAAAAATTA
Found at i:92672843 original size:33 final size:33
Alignment explanation
Indices: 92672806--92672869 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
92672796 AATACATTGG
* *
92672806 AAATCAGCATGCAGGTGGTTTAAATACTATTCC
1 AAATCAGCATGCAGATGGTGTAAATACTATTCC
92672839 AAATCAGCATGCAGATGGTGTAAATACTATT
1 AAATCAGCATGCAGATGGTGTAAATACTATT
92672870 TCAACTGAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.30
Consensus pattern (33 bp):
AAATCAGCATGCAGATGGTGTAAATACTATTCC
Found at i:92678299 original size:21 final size:20
Alignment explanation
Indices: 92678275--92678314 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
92678265 TTTAGTTTAC
*
92678275 TTTAAATCCTAAACTCTAAAT
1 TTTAAACCCTAAA-TCTAAAT
*
92678296 TTTAAGCCCTAAATCTAAA
1 TTTAAACCCTAAATCTAAA
92678315 ATCCTAAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.42, C:0.20, G:0.03, T:0.35
Consensus pattern (20 bp):
TTTAAACCCTAAATCTAAAT
Found at i:92685273 original size:21 final size:20
Alignment explanation
Indices: 92685233--92685274 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
92685223 AATATGTTTT
92685233 AAATTGAAATTTTATGATAG
1 AAATTGAAATTTTATGATAG
92685253 AAATTGAAAGGTTTT-TGATAG
1 AAATTGAAA--TTTTATGATAG
92685274 A
1 A
92685275 TAAACAACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 9 0.45
21 7 0.35
22 4 0.20
ACGTcount: A:0.43, C:0.00, G:0.19, T:0.38
Consensus pattern (20 bp):
AAATTGAAATTTTATGATAG
Found at i:92685956 original size:32 final size:32
Alignment explanation
Indices: 92685920--92686029 Score: 116
Period size: 32 Copynumber: 3.4 Consensus size: 32
92685910 AAAGGGTGAT
92685920 ACTTGAAAAGGATACATGTAC-CTAAATG-GTAC
1 ACTTGAAAAGGA-A-ATGTACACTAAATGTGTAC
***
92685952 ACTTGAAAAGGAAATGTACACTTTGTGTGTAC
1 ACTTGAAAAGGAAATGTACACTAAATGTGTAC
** *
92685984 ACTTGAAAAGGAAATGTACACTTTATGTATAC
1 ACTTGAAAAGGAAATGTACACTAAATGTGTAC
*
92686016 TATTTGAAAAGGAA
1 -ACTTGAAAAGGAA
92686030 TGTGCACCTC
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
30 6 0.09
31 5 0.07
32 46 0.67
33 12 0.17
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (32 bp):
ACTTGAAAAGGAAATGTACACTAAATGTGTAC
Found at i:92686032 original size:32 final size:32
Alignment explanation
Indices: 92685949--92686064 Score: 117
Period size: 32 Copynumber: 3.6 Consensus size: 32
92685939 ACCTAAATGG
* * *
92685949 TACACTTGAAAAGGAAATGTACACTTTGTGTG
1 TACATTTGAAAAGGAAATGTACACTTTATGTA
*
92685981 TACACTTGAAAAGGAAATGTACACTTTATGTA
1 TACATTTGAAAAGGAAATGTACACTTTATGTA
* * * *
92686013 TACTATTTGAAAAGG-AATGTGCACCTCAAGTA
1 TAC-ATTTGAAAAGGAAATGTACACTTTATGTA
*
92686045 TACAATTGGAAAAGGGAAAT
1 TAC-ATTTGAAAA-GGAAAT
92686065 ATCCATCGGA
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
32 57 0.79
33 12 0.17
34 3 0.04
ACGTcount: A:0.40, C:0.12, G:0.20, T:0.28
Consensus pattern (32 bp):
TACATTTGAAAAGGAAATGTACACTTTATGTA
Found at i:92686535 original size:5 final size:5
Alignment explanation
Indices: 92686525--92686550 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
92686515 ATATTTTGAG
92686525 ATGAT ATGAT ATGAT ATGAT ATGAT A
1 ATGAT ATGAT ATGAT ATGAT ATGAT A
92686551 AGTATGTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.38
Consensus pattern (5 bp):
ATGAT
Found at i:92688041 original size:52 final size:53
Alignment explanation
Indices: 92687932--92688091 Score: 193
Period size: 52 Copynumber: 3.1 Consensus size: 53
92687922 TGACGGAAAA
* * * *
92687932 GATGTGATATGTGCTTCC-GTATAAGACCATAGCAGGGCTATGGCATTGGTAC
1 GATGTGATATGTGATTCCTGTATAAGACCATAGCTGGGCTATGGCATCGGTAT
* * *
92687984 AATGTGAT-TCGTG-TTCCTGTATAATACCATAGCTGGGCTATGGCATCGGTGT
1 GATGTGATAT-GTGATTCCTGTATAAGACCATAGCTGGGCTATGGCATCGGTAT
* *
92688036 GATGTGATAATGTGATTCCT-TATAAGACCATATCTGGGATATGGCATCGGTAT
1 GATGTGAT-ATGTGATTCCTGTATAAGACCATAGCTGGGCTATGGCATCGGTAT
92688089 GAT
1 GAT
92688092 ATGTGATCCG
Statistics
Matches: 92, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
51 5 0.05
52 46 0.50
53 35 0.38
54 6 0.07
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.33
Consensus pattern (53 bp):
GATGTGATATGTGATTCCTGTATAAGACCATAGCTGGGCTATGGCATCGGTAT
Found at i:92689656 original size:18 final size:18
Alignment explanation
Indices: 92689633--92689667 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
92689623 GTGTTCCAAG
*
92689633 CCACACGGGCGTGTGTGA
1 CCACACGGGCATGTGTGA
92689651 CCACACGGGCATGTGTG
1 CCACACGGGCATGTGTG
92689668 GTACTGTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.29, G:0.37, T:0.17
Consensus pattern (18 bp):
CCACACGGGCATGTGTGA
Found at i:92690499 original size:15 final size:14
Alignment explanation
Indices: 92690473--92690514 Score: 59
Period size: 13 Copynumber: 3.0 Consensus size: 14
92690463 GGCTTCATTA
*
92690473 TTATGGTTAAGGGT
1 TTATGTTTAAGGGT
92690487 TTAGTGTTTAAGGG-
1 TTA-TGTTTAAGGGT
92690501 TTATGTTTAAGGGT
1 TTATGTTTAAGGGT
92690515 CTAATGTTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 10 0.40
14 6 0.24
15 9 0.36
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.45
Consensus pattern (14 bp):
TTATGTTTAAGGGT
Found at i:92690521 original size:15 final size:14
Alignment explanation
Indices: 92690479--92690522 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 14
92690469 ATTATTATGG
*
92690479 TTAAGGGTTTAGTGT
1 TTAAGGG-TTAATGT
92690494 TTAAGGGTT-ATGT
1 TTAAGGGTTAATGT
92690507 TTAAGGGTCTAATGT
1 TTAAGGGT-TAATGT
92690522 T
1 T
92690523 AGGGTTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
13 11 0.42
14 3 0.12
15 12 0.46
ACGTcount: A:0.23, C:0.02, G:0.30, T:0.45
Consensus pattern (14 bp):
TTAAGGGTTAATGT
Found at i:92690858 original size:14 final size:15
Alignment explanation
Indices: 92690841--92690879 Score: 55
Period size: 13 Copynumber: 2.7 Consensus size: 15
92690831 TTTTATTTTC
92690841 GTTTTAGGTTTTAA-
1 GTTTTAGGTTTTAAT
*
92690855 G-TTTAGGGTTTAAT
1 GTTTTAGGTTTTAAT
92690869 GTTTTAGGTTT
1 GTTTTAGGTTT
92690880 CAAGATTAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
13 11 0.52
14 2 0.10
15 8 0.38
ACGTcount: A:0.18, C:0.00, G:0.26, T:0.56
Consensus pattern (15 bp):
GTTTTAGGTTTTAAT
Found at i:92690874 original size:28 final size:28
Alignment explanation
Indices: 92690841--92690900 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
92690831 TTTTATTTTC
* *
92690841 GTTTTAGGTTTTAAGTTTAGGGTTTAAT
1 GTTTTAGGTTTCAAGATTAGGGTTTAAT
*
92690869 GTTTTAGGTTTCAAGATTAGGGTTTTAT
1 GTTTTAGGTTTCAAGATTAGGGTTTAAT
92690897 GTTT
1 GTTT
92690901 AAGGCTTATG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.20, C:0.02, G:0.25, T:0.53
Consensus pattern (28 bp):
GTTTTAGGTTTCAAGATTAGGGTTTAAT
Found at i:92695472 original size:25 final size:25
Alignment explanation
Indices: 92695436--92695486 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
92695426 TAGAAGTTAT
92695436 TAAAGTTTAAACTCATATTTACATA
1 TAAAGTTTAAACTCATATTTACATA
*
92695461 TAAA-TTTAAAACTTATATTTACATA
1 TAAAGTTT-AAACTCATATTTACATA
92695486 T
1 T
92695487 TTATATGGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 3 0.12
25 21 0.88
ACGTcount: A:0.45, C:0.10, G:0.02, T:0.43
Consensus pattern (25 bp):
TAAAGTTTAAACTCATATTTACATA
Found at i:92700108 original size:13 final size:13
Alignment explanation
Indices: 92700090--92700136 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
92700080 GTAAATTTTG
92700090 ATGTTATTTATAA
1 ATGTTATTTATAA
*
92700103 ATGTTATTTATGTA
1 ATGTTATTTAT-AA
*
92700117 AT-TTATTAAATAA
1 ATGTTATT-TATAA
92700130 ATGTTAT
1 ATGTTAT
92700137 CAAATTAAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
13 19 0.68
14 9 0.32
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (13 bp):
ATGTTATTTATAA
Found at i:92701661 original size:30 final size:30
Alignment explanation
Indices: 92701627--92701698 Score: 93
Period size: 24 Copynumber: 2.6 Consensus size: 30
92701617 TTTGAATGTA
92701627 TTTGATTTGAATTACATTTGTTTGATGAAT
1 TTTGATTTGAATTACATTTGTTTGATGAAT
92701657 TTTGATTTG----A-A-TTGTTTGATGAAT
1 TTTGATTTGAATTACATTTGTTTGATGAAT
*
92701681 TTCGATTTGAATTACATT
1 TTTGATTTGAATTACATT
92701699 CGTCCAAGAC
Statistics
Matches: 35, Mismatches: 1, Indels: 12
0.73 0.02 0.25
Matches are distributed among these distances:
24 21 0.60
25 1 0.03
26 1 0.03
28 1 0.03
29 1 0.03
30 10 0.29
ACGTcount: A:0.26, C:0.04, G:0.17, T:0.53
Consensus pattern (30 bp):
TTTGATTTGAATTACATTTGTTTGATGAAT
Found at i:92715574 original size:21 final size:22
Alignment explanation
Indices: 92715550--92715590 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
92715540 TTGTACAATT
*
92715550 TGTTATG-GTAATAAAATTGTG
1 TGTTATGCCTAATAAAATTGTG
92715571 TGTTATGCCTAATAAAATTG
1 TGTTATGCCTAATAAAATTG
92715591 ATGAATGGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.34, C:0.05, G:0.20, T:0.41
Consensus pattern (22 bp):
TGTTATGCCTAATAAAATTGTG
Found at i:92718081 original size:2 final size:2
Alignment explanation
Indices: 92718074--92718101 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
92718064 CGCCGACTCC
92718074 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
92718102 TGAATTTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:92722609 original size:22 final size:22
Alignment explanation
Indices: 92722583--92722627 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
92722573 TTTGATTTTG
92722583 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
92722605 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
92722627 T
1 T
92722628 CTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:92726244 original size:12 final size:12
Alignment explanation
Indices: 92726227--92726257 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
92726217 TGTATTTTTG
92726227 ACGGTTCGCATC
1 ACGGTTCGCATC
92726239 ACGGTTCGCATC
1 ACGGTTCGCATC
92726251 ACGGTTC
1 ACGGTTC
92726258 TTACATTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.16, C:0.32, G:0.26, T:0.26
Consensus pattern (12 bp):
ACGGTTCGCATC
Found at i:92727252 original size:20 final size:20
Alignment explanation
Indices: 92727227--92727330 Score: 90
Period size: 20 Copynumber: 5.3 Consensus size: 20
92727217 GGGTATCCCA
92727227 GTTCGGGTTTATTGACCCCG
1 GTTCGGGTTTATTGACCCCG
* ** *
92727247 GTTCGGCTTT-GGGA-ACCG
1 GTTCGGGTTTATTGACCCCG
*
92727265 GACTCGGGTTTATTGACCCCG
1 G-TTCGGGTTTATTGACCCCG
92727286 GTTCGGGTTTATTAGA-CCCG
1 GTTCGGGTTTATT-GACCCCG
* * *
92727306 GTTC-AGTTTTTTAACCCCG
1 GTTCGGGTTTATTGACCCCG
92727325 GTTCGG
1 GTTCGG
92727331 TTTTTTTAGA
Statistics
Matches: 64, Mismatches: 14, Indels: 12
0.71 0.16 0.13
Matches are distributed among these distances:
18 5 0.08
19 23 0.36
20 30 0.47
21 6 0.09
ACGTcount: A:0.12, C:0.24, G:0.30, T:0.34
Consensus pattern (20 bp):
GTTCGGGTTTATTGACCCCG
Found at i:92727337 original size:20 final size:20
Alignment explanation
Indices: 92727279--92727399 Score: 86
Period size: 20 Copynumber: 6.0 Consensus size: 20
92727269 CGGGTTTATT
*
92727279 GACCCCGGTTCGGGTTTATTA
1 GACCCCGGTTC-GGTTTTTTA
*
92727300 GA-CCCGGTTCAGTTTTTTA
1 GACCCCGGTTCGGTTTTTTA
92727319 -ACCCCGGTTCGGTTTTTTTA
1 GACCCCGGTTCGG-TTTTTTA
* * * *
92727339 GAAACCCGATTCGATTTTATTG
1 G-ACCCCGGTTCGGTTTT-TTA
* * *
92727361 GA-CCCGATTCTGTTTCTTA
1 GACCCCGGTTCGGTTTTTTA
* *
92727380 AACCCCGGTTTGGTTTTTTA
1 GACCCCGGTTCGGTTTTTTA
92727400 AGGGAACCTA
Statistics
Matches: 78, Mismatches: 16, Indels: 13
0.73 0.15 0.12
Matches are distributed among these distances:
18 1 0.01
19 19 0.24
20 39 0.50
21 7 0.09
22 12 0.15
ACGTcount: A:0.17, C:0.22, G:0.21, T:0.40
Consensus pattern (20 bp):
GACCCCGGTTCGGTTTTTTA
Found at i:92727357 original size:39 final size:39
Alignment explanation
Indices: 92727280--92727357 Score: 88
Period size: 39 Copynumber: 2.0 Consensus size: 39
92727270 GGGTTTATTG
* *
92727280 ACCCCGGTTCGGGTTTATTAGACCCGGTTCAGTTTTTTA
1 ACCCCGGTTCGGGTTTATTAGACCCGATTCAGTATTTTA
* *
92727319 ACCCCGGTTCGGTTTTTTTAGAAACCCGATTC-G-ATTTTA
1 ACCCCGGTTCGGGTTTATTAG--ACCCGATTCAGTATTTTA
92727358 TTGGACCCGA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
39 24 0.73
40 1 0.03
41 8 0.24
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (39 bp):
ACCCCGGTTCGGGTTTATTAGACCCGATTCAGTATTTTA
Found at i:92727434 original size:21 final size:21
Alignment explanation
Indices: 92727312--92727448 Score: 75
Period size: 20 Copynumber: 6.5 Consensus size: 21
92727302 CCCGGTTCAG
*
92727312 TTTTTT-AACCCCGGTTCGGT
1 TTTTTTGAACCCCGATTCGGT
* *
92727332 TTTTTTAGAAACCCGATTCGAT
1 TTTTTT-GAACCCCGATTCGGT
* * *
92727354 TTTATTGGA-CCCGATTCTG-
1 TTTTTTGAACCCCGATTCGGT
* * * *
92727373 TTTCTTAAACCCCGGTTTGGT
1 TTTTTTGAACCCCGATTCGGT
* **
92727394 TTTTTAAGGGAA-CCTAATTCGGT
1 TTTTT---TGAACCCCGATTCGGT
*
92727417 TTTTTTGAACCCCGATTCAGT
1 TTTTTTGAACCCCGATTCGGT
*
92727438 TTTTTGGAACC
1 TTTTTTGAACC
92727449 TGGTTCAGTT
Statistics
Matches: 84, Mismatches: 25, Indels: 15
0.68 0.20 0.12
Matches are distributed among these distances:
19 6 0.07
20 24 0.29
21 24 0.29
22 16 0.19
23 12 0.14
24 2 0.02
ACGTcount: A:0.19, C:0.20, G:0.18, T:0.42
Consensus pattern (21 bp):
TTTTTTGAACCCCGATTCGGT
Found at i:92727461 original size:21 final size:21
Alignment explanation
Indices: 92727410--92727462 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
92727400 AGGGAACCTA
*
92727410 ATTCGGTTTTTTTGAACCCCG
1 ATTCAGTTTTTTTGAACCCCG
* *
92727431 ATTCAGTTTTTTGGAA-CCTG
1 ATTCAGTTTTTTTGAACCCCG
*
92727451 GTTCAGTTTTTT
1 ATTCAGTTTTTT
92727463 AAGGGAACCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.15, C:0.17, G:0.19, T:0.49
Consensus pattern (21 bp):
ATTCAGTTTTTTTGAACCCCG
Found at i:92727556 original size:8 final size:8
Alignment explanation
Indices: 92727543--92727710 Score: 92
Period size: 8 Copynumber: 22.6 Consensus size: 8
92727533 TAGGGTTGCG
92727543 GGGTTTTA
1 GGGTTTTA
92727551 GGG-TTTA
1 GGGTTTTA
*
92727558 AGGTTTTA
1 GGGTTTTA
* *
92727566 TGGTTTAA
1 GGGTTTTA
92727574 GGG-TTTA
1 GGGTTTTA
*
92727581 -GGATTTA
1 GGGTTTTA
**
92727588 ATG-TTTA
1 GGGTTTTA
**
92727595 GGGTTAAA
1 GGGTTTTA
*
92727603 GGG-TTTG
1 GGGTTTTA
*
92727610 GGGTTTGA
1 GGGTTTTA
*
92727618 -AG-TTT-
1 GGGTTTTA
*
92727623 GGGGTTTA
1 GGGTTTTA
92727631 GGG-TTT-
1 GGGTTTTA
*
92727637 GGGGTTT-
1 GGGTTTTA
*
92727644 GGGGTTT-
1 GGGTTTTA
*
92727651 GGGGTTTA
1 GGGTTTTA
92727659 GGG-TTTA
1 GGGTTTTA
92727666 GGGTTTTA
1 GGGTTTTA
*
92727674 AGGTTTTA
1 GGGTTTTA
92727682 GGGTTTTA
1 GGGTTTTA
*
92727690 GGATTTTA
1 GGGTTTTA
92727698 GGGTTTTA
1 GGGTTTTA
92727706 GGGTT
1 GGGTT
92727711 ATGAGTAGGG
Statistics
Matches: 127, Mismatches: 22, Indels: 22
0.74 0.13 0.13
Matches are distributed among these distances:
6 8 0.06
7 53 0.42
8 66 0.52
ACGTcount: A:0.15, C:0.00, G:0.39, T:0.45
Consensus pattern (8 bp):
GGGTTTTA
Found at i:92727564 original size:15 final size:15
Alignment explanation
Indices: 92727547--92727710 Score: 133
Period size: 14 Copynumber: 11.1 Consensus size: 15
92727537 GTTGCGGGGT
*
92727547 TTTAGGGTTTAAGGT
1 TTTAGGGTTTAAGGG
*
92727562 TTTATGGTTTAAGGG
1 TTTAGGGTTTAAGGG
* *
92727577 TTTAGGATTTAA-TG
1 TTTAGGGTTTAAGGG
*
92727591 TTTAGGGTTAAAGGG
1 TTTAGGGTTTAAGGG
*
92727606 TTTGGGGTTTGAA--G
1 TTTAGGGTTT-AAGGG
*
92727620 TTTGGGGTTT-AGGG
1 TTTAGGGTTTAAGGG
* *
92727634 TTTGGGGTTT-GGGG
1 TTTAGGGTTTAAGGG
*
92727648 TTTGGGGTTT-AGGG
1 TTTAGGGTTTAAGGG
*
92727662 TTTAGGGTTTTAAGGT
1 TTTAGGG-TTTAAGGG
* *
92727678 TTTAGGGTTTTAGGAT
1 TTTAGGGTTTAAGG-G
*
92727694 TTTAGGGTTTTAGGG
1 TTTAGGGTTTAAGGG
92727709 TT
1 TT
92727711 ATGAGTAGGG
Statistics
Matches: 126, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
12 1 0.01
14 55 0.44
15 43 0.34
16 27 0.21
ACGTcount: A:0.16, C:0.00, G:0.38, T:0.46
Consensus pattern (15 bp):
TTTAGGGTTTAAGGG
Done.