Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 29 of 290
Found at i:9306453 original size:30 final size:30
Alignment explanation
Indices: 9306394--9306453 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
9306384 TATTTTATTA
*
9306394 TTAATTTTGTTATTATTTTAAAGGTATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
9306424 TTAATTTT-TTATTACTTTTAGAA-GCATTTG
1 TTAATTTTGTTATTA-TTTTA-AAGGCATTTG
9306454 CTTATTAAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
29 6 0.22
30 19 0.70
31 2 0.07
ACGTcount: A:0.27, C:0.03, G:0.12, T:0.58
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGCATTTG
Found at i:9307831 original size:48 final size:45
Alignment explanation
Indices: 9307735--9307831 Score: 113
Period size: 48 Copynumber: 2.1 Consensus size: 45
9307725 TATCGACCCG
* **
9307735 GAATGCATAACACCATGTCAAAGCATAAAGCGGAAAAAATATCGC
1 GAATGCATAACACCATGTCAAAGCATAAAGCGGAAAAAACAGAGC
* * *
9307780 GAATGCATAACGCCATGTTATTAGAGCATAAAGCGGAAAAAACAGATC
1 GAATGCATAACACCATGTCA--A-AGCATAAAGCGGAAAAAACAGAGC
9307828 GAAT
1 GAAT
9307832 ACAATCAGGA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
45 18 0.42
47 1 0.02
48 24 0.56
ACGTcount: A:0.45, C:0.18, G:0.20, T:0.18
Consensus pattern (45 bp):
GAATGCATAACACCATGTCAAAGCATAAAGCGGAAAAAACAGAGC
Found at i:9308695 original size:21 final size:21
Alignment explanation
Indices: 9308666--9308709 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
9308656 TAATGACCAA
*
9308666 AAATGACAAAATTAAATA-ATT
1 AAATAACAAAA-TAAATATATT
9308687 AAATAACAAAATAAATATATT
1 AAATAACAAAATAAATATATT
9308708 AA
1 AA
9308710 TTGTTGGATC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.66, C:0.05, G:0.02, T:0.27
Consensus pattern (21 bp):
AAATAACAAAATAAATATATT
Found at i:9309167 original size:2 final size:2
Alignment explanation
Indices: 9309160--9309184 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
9309150 AACTTGATTT
9309160 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
9309185 TTAAAATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9313472 original size:54 final size:54
Alignment explanation
Indices: 9313406--9313562 Score: 206
Period size: 54 Copynumber: 2.9 Consensus size: 54
9313396 TTGGCTGTTG
* * * * *
9313406 CAAAAGATGATGTTACACTAGCAGCTAATGTTTGTCCTTCGAGCTTGTCTGTCA
1 CAAAAGATGATGTTACACTAGCAGCTAATGTTTCTCCTTCAAACTTGGCTGACA
* * * *
9313460 CTAAAGATGATGTTATACGAACAGCTAATGTTTCTCCTTCAAACTTGGCTGACA
1 CAAAAGATGATGTTACACTAGCAGCTAATGTTTCTCCTTCAAACTTGGCTGACA
** *
9313514 CAAAAGACAATGTTACACTAGCAGCTAATGCTTCTCCTTCAAACTTGGC
1 CAAAAGATGATGTTACACTAGCAGCTAATGTTTCTCCTTCAAACTTGGC
9313563 AGTCGTAAAA
Statistics
Matches: 87, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 87 1.00
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (54 bp):
CAAAAGATGATGTTACACTAGCAGCTAATGTTTCTCCTTCAAACTTGGCTGACA
Found at i:9313573 original size:54 final size:54
Alignment explanation
Indices: 9313415--9313599 Score: 201
Period size: 54 Copynumber: 3.4 Consensus size: 54
9313405 GCAAAAGATG
* * * * * **
9313415 ATGTTACACTAGCAGCTAATGTTTGTCCTTCGAGCTTGTCTGTCACT-AAAGATG
1 ATGTTACACTAACAGCTAATGTTTCTCCTTCAAACTTGGCTGTCA-TAAAAGACA
* * * *
9313469 ATGTTATACGAACAGCTAATGTTTCTCCTTCAAACTTGGCTGACACAAAAGACA
1 ATGTTACACTAACAGCTAATGTTTCTCCTTCAAACTTGGCTGTCATAAAAGACA
* * * *
9313523 ATGTTACACTAGCAGCTAATGCTTCTCCTTCAAACTTGGCAGTCGTAAAAGACA
1 ATGTTACACTAACAGCTAATGTTTCTCCTTCAAACTTGGCTGTCATAAAAGACA
* *
9313577 ATGCTACACTAACAACTAATGTT
1 ATGTTACACTAACAGCTAATGTT
9313600 AAAGAGAACA
Statistics
Matches: 107, Mismatches: 23, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
54 107 1.00
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.30
Consensus pattern (54 bp):
ATGTTACACTAACAGCTAATGTTTCTCCTTCAAACTTGGCTGTCATAAAAGACA
Found at i:9313996 original size:3 final size:3
Alignment explanation
Indices: 9313990--9314015 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
9313980 TATACTGTTG
9313990 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
9314016 TAAGCGTTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:9317762 original size:35 final size:36
Alignment explanation
Indices: 9317695--9317763 Score: 95
Period size: 35 Copynumber: 1.9 Consensus size: 36
9317685 TTTAAAATTA
* ***
9317695 AAATTTTATATTATTTTTAATTTAATTTTTTTTTAC
1 AAATTTTATATTATTGTTAATTTAACACTTTTTTAC
9317731 AAATTTTATA-TATTGTTAATTTAACACTTTTTT
1 AAATTTTATATTATTGTTAATTTAACACTTTTTT
9317764 TAATGTTTAC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 19 0.66
36 10 0.34
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.62
Consensus pattern (36 bp):
AAATTTTATATTATTGTTAATTTAACACTTTTTTAC
Found at i:9317762 original size:36 final size:36
Alignment explanation
Indices: 9317695--9317765 Score: 99
Period size: 36 Copynumber: 2.0 Consensus size: 36
9317685 TTTAAAATTA
* **
9317695 AAATTTTATATTATTTTTAATTTAATTTTTTTTTAC
1 AAATTTTATATTATTGTTAATTTAAACTTTTTTTAC
9317731 AAATTTTATA-TATTGTTAATTTAACACTTTTTTTA
1 AAATTTTATATTATTGTTAATTTAA-ACTTTTTTTA
9317766 ATGTTTACAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
35 13 0.42
36 18 0.58
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.62
Consensus pattern (36 bp):
AAATTTTATATTATTGTTAATTTAAACTTTTTTTAC
Found at i:9322652 original size:36 final size:34
Alignment explanation
Indices: 9322579--9322653 Score: 89
Period size: 34 Copynumber: 2.1 Consensus size: 34
9322569 TATATACAGG
* *
9322579 TATATGTGTATATGAACTAAAATATATAAAGTAA
1 TATATATGTATATGAACTAAAATATATAAAATAA
*
9322613 TATATATGTATATGAATTTAAAAAGTATATAAAAT-A
1 TATATATGTATATGAA-CT-AAAA-TATATAAAATAA
9322649 TATAT
1 TATAT
9322654 TTTAAATTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
34 15 0.43
35 1 0.03
36 10 0.29
37 9 0.26
ACGTcount: A:0.51, C:0.01, G:0.09, T:0.39
Consensus pattern (34 bp):
TATATATGTATATGAACTAAAATATATAAAATAA
Found at i:9322857 original size:3 final size:3
Alignment explanation
Indices: 9322849--9322887 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
9322839 AATTAAAAAG
*
9322849 ATA ATA ATA ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
9322888 GGACTAGATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:9324498 original size:43 final size:44
Alignment explanation
Indices: 9324431--9324724 Score: 149
Period size: 44 Copynumber: 6.8 Consensus size: 44
9324421 CCTTTATTTT
* * * * *
9324431 AATCCGCTCCACTTGTAACTTCAGGGAGATAGGAT-AGTGTCTTC
1 AATCTGCTCCAC-TGTAACCTCAGGGAGATAAGATCACTGGCTTC
* * * *
9324475 GATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCACTGGCTTC
* * *
9324519 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCCGAAAT-TCTTT
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-C--ACTGGCTTC
** ** * *
9324565 GGTCTATTCCACTGTAATCTCAGGGAGATAAGA-C-CT-GATGT-
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCACTGGCT-TC
* * * * * *
9324606 GATCTTCTCTACTGTAACTTCAGAGAGATAAGATC-CT---TTT
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCACTGGCTTC
* * * * * * ** *
9324646 AATCCGCTCCATTGTAATCTCAAGGAGATAGGATTACTATCTTT
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCACTGGCTTC
* * *
9324690 GATCTGCTCCGCTGTAATCTCAGGGAGATAAGATC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATC
9324725 TGAAATTCTT
Statistics
Matches: 190, Mismatches: 49, Indels: 22
0.73 0.19 0.08
Matches are distributed among these distances:
39 1 0.01
40 25 0.13
41 30 0.16
42 4 0.02
43 19 0.10
44 78 0.41
45 1 0.01
46 31 0.16
47 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.31
Consensus pattern (44 bp):
AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCACTGGCTTC
Found at i:9324589 original size:46 final size:45
Alignment explanation
Indices: 9324470--9324768 Score: 182
Period size: 44 Copynumber: 6.8 Consensus size: 45
9324460 TAGGATAGTG
* * *
9324470 TCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTC---T
1 TCTTTGATCTGTTCCACTGTAATCTCAGGGAGATAAGATC-CGAAT
* ** * *
9324513 GGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCCGAAAT
1 -TCTTTGATCTGTTCCACTGTAATCTCAGGGAGATAAGATCCG-AAT
* *
9324560 TCTTTGGTCTATTCCACTGTAATCTCAGGGAGATAAGA-CCTG-A-
1 TCTTTGATCTGTTCCACTGTAATCTCAGGGAGATAAGATCC-GAAT
* * *
9324603 --TGTGATCT-TCTCTACTGTAA-CTTCAGAGAGATAAGATCC----
1 TCTTTGATCTGT-TCCACTGTAATC-TCAGGGAGATAAGATCCGAAT
* * * * * * * *
9324642 T-TTTAATCCGCTCCATTGTAATCTCAAGGAGATAGGAT--TACT
1 TCTTTGATCTGTTCCACTGTAATCTCAGGGAGATAAGATCCGAAT
* * *
9324684 ATCTTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAT
1 -TCTTTGATCTGTTCCACTGTAATCTCAGGGAGATAAGATCCG-AAT
*
9324731 TCTTTGGTCTGTTCCACTGTAATCTCAGGGAGATAAGA
1 TCTTTGATCTGTTCCACTGTAATCTCAGGGAGATAAGA
9324769 CCTGTATAAT
Statistics
Matches: 200, Mismatches: 35, Indels: 38
0.73 0.13 0.14
Matches are distributed among these distances:
40 27 0.14
41 29 0.14
42 2 0.01
43 2 0.01
44 68 0.34
45 2 0.01
46 67 0.34
47 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.32
Consensus pattern (45 bp):
TCTTTGATCTGTTCCACTGTAATCTCAGGGAGATAAGATCCGAAT
Found at i:9324706 original size:44 final size:46
Alignment explanation
Indices: 9324651--9324768 Score: 143
Period size: 46 Copynumber: 2.6 Consensus size: 46
9324641 CTTTTAATCC
* * * *
9324651 GCTCCATTGTAATCTCAAGGAGATAGGAT-T--ACTATCTTTGATCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATCTGAAAT-TCTTTGATCT
* *
9324695 GCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTTGGTCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATCTGAAATTCTTTGATCT
*
9324741 GTTCCACTGTAATCTCAGGGAGATAAGA
1 GCTCCACTGTAATCTCAGGGAGATAAGA
9324769 CCTGTATAAT
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
44 25 0.40
45 1 0.02
46 35 0.56
47 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (46 bp):
GCTCCACTGTAATCTCAGGGAGATAAGATCTGAAATTCTTTGATCT
Found at i:9344808 original size:14 final size:14
Alignment explanation
Indices: 9344785--9344819 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
9344775 AATATATATA
9344785 AAATAATTTAAAAT
1 AAATAATTTAAAAT
*
9344799 AAATAGTTTAAAAT
1 AAATAATTTAAAAT
*
9344813 ACATAAT
1 AAATAAT
9344820 ATATAAAAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (14 bp):
AAATAATTTAAAAT
Found at i:9344944 original size:35 final size:38
Alignment explanation
Indices: 9344874--9344947 Score: 109
Period size: 37 Copynumber: 2.0 Consensus size: 38
9344864 GTCTACATAC
*
9344874 AAATATTATATATATAAAACATTTAAAATAGATAATAT
1 AAATATTATACATATAAAACATTTAAAATAGATAATAT
*
9344912 AAATA-TATACATATAAAA-GTTTAAAATA-ATAATAT
1 AAATATTATACATATAAAACATTTAAAATAGATAATAT
9344947 A
1 A
9344948 CAAAACAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
35 8 0.24
36 9 0.26
37 12 0.35
38 5 0.15
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (38 bp):
AAATATTATACATATAAAACATTTAAAATAGATAATAT
Found at i:9345001 original size:22 final size:24
Alignment explanation
Indices: 9344957--9345017 Score: 81
Period size: 22 Copynumber: 2.6 Consensus size: 24
9344947 ACAAAACAAA
9344957 TTAAAATAAATAATAGAAGATAAT
1 TTAAAATAAATAATAGAAGATAAT
*
9344981 TTAAAGTAAATAA-A-AAGATAAT
1 TTAAAATAAATAATAGAAGATAAT
* *
9345003 TTTAGATAAATAATA
1 TTAAAATAAATAATA
9345018 TATATAGAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
22 18 0.56
23 2 0.06
24 12 0.38
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.31
Consensus pattern (24 bp):
TTAAAATAAATAATAGAAGATAAT
Found at i:9345078 original size:25 final size:24
Alignment explanation
Indices: 9345026--9345085 Score: 59
Period size: 26 Copynumber: 2.5 Consensus size: 24
9345016 TATATATAGA
* *
9345026 AAAACAGTGTAAAATAGATACTAC
1 AAAACAATTTAAAATAGATACTAC
* *
9345050 AAAAAGCAATTTAAAATA-ATAGTAT
1 -AAAA-CAATTTAAAATAGATACTAC
9345075 AAAACAATTTA
1 AAAACAATTTA
9345086 GAATTATCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
23 7 0.23
24 4 0.13
25 9 0.30
26 10 0.33
ACGTcount: A:0.58, C:0.08, G:0.08, T:0.25
Consensus pattern (24 bp):
AAAACAATTTAAAATAGATACTAC
Found at i:9345390 original size:28 final size:28
Alignment explanation
Indices: 9345359--9345436 Score: 69
Period size: 25 Copynumber: 3.0 Consensus size: 28
9345349 AATAGACAAT
9345359 ATATATGTAATAGTTTAAAATATAATAC
1 ATATATGTAATAGTTTAAAATATAATAC
** *
9345387 ATAT-T-TATATAAATTCAAA-AT-ATAC
1 ATATATGTA-ATAGTTTAAAATATAATAC
*
9345412 ATA-ATGTAAAAGTTTAAAATA-AATA
1 ATATATGTAATAGTTTAAAATATAATA
9345437 TTGTATACAA
Statistics
Matches: 38, Mismatches: 7, Indels: 12
0.67 0.12 0.21
Matches are distributed among these distances:
25 15 0.39
26 10 0.26
27 9 0.24
28 4 0.11
ACGTcount: A:0.54, C:0.04, G:0.05, T:0.37
Consensus pattern (28 bp):
ATATATGTAATAGTTTAAAATATAATAC
Found at i:9346566 original size:21 final size:22
Alignment explanation
Indices: 9346525--9346566 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
9346515 ATCCCTGCTT
*
9346525 TGTATTGTTTCTGCCTCTGTTC
1 TGTATGGTTTCTGCCTCTGTTC
*
9346547 TGTATGGTTT-TGCTTCTGTT
1 TGTATGGTTTCTGCCTCTGTT
9346567 TCGCCTCTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.05, C:0.17, G:0.21, T:0.57
Consensus pattern (22 bp):
TGTATGGTTTCTGCCTCTGTTC
Found at i:9350542 original size:15 final size:14
Alignment explanation
Indices: 9350515--9350545 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 14
9350505 ATAATTAAAT
9350515 TTAAATAAAAATAA
1 TTAAATAAAAATAA
9350529 TTAAATAAATAATAA
1 TTAAATAAA-AATAA
9350544 TT
1 TT
9350546 GGGGATATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (14 bp):
TTAAATAAAAATAA
Found at i:9358578 original size:24 final size:24
Alignment explanation
Indices: 9358532--9358580 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
9358522 TTCAGCCCAT
* **
9358532 AAGAATATTTTTCATAATCATAAA
1 AAGAATATTTTCCATAAAAATAAA
9358556 AAGAATATTTTCCATAAAAATAAA
1 AAGAATATTTTCCATAAAAATAAA
9358580 A
1 A
9358581 TACGCTTACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.55, C:0.08, G:0.04, T:0.33
Consensus pattern (24 bp):
AAGAATATTTTCCATAAAAATAAA
Found at i:9359502 original size:15 final size:14
Alignment explanation
Indices: 9359484--9359526 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
9359474 TTTAATATTT
9359484 TTATAGGTTTAGGGG
1 TTAT-GGTTTAGGGG
*
9359499 TTATGGGTTTAAGGG
1 TTAT-GGTTTAGGGG
*
9359514 TTATGATTTAGGG
1 TTATGGTTTAGGG
9359527 TTGATGATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 7 0.29
15 17 0.71
ACGTcount: A:0.21, C:0.00, G:0.37, T:0.42
Consensus pattern (14 bp):
TTATGGTTTAGGGG
Found at i:9359558 original size:14 final size:14
Alignment explanation
Indices: 9359491--9359558 Score: 57
Period size: 14 Copynumber: 4.8 Consensus size: 14
9359481 TTTTTATAGG
* *
9359491 TTTAGGGGTTATGGG
1 TTTAGGGTTTAT-GA
9359506 TTTAAGGG-TTATGA
1 TTT-AGGGTTTATGA
*
9359520 TTTAGGGTTGATGA
1 TTTAGGGTTTATGA
***
9359534 TTTATATTTTATGA
1 TTTAGGGTTTATGA
9359548 TTTAGGGTTTA
1 TTTAGGGTTTA
9359559 AGGTTTATAA
Statistics
Matches: 42, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
13 4 0.10
14 27 0.64
15 7 0.17
16 4 0.10
ACGTcount: A:0.22, C:0.00, G:0.29, T:0.49
Consensus pattern (14 bp):
TTTAGGGTTTATGA
Found at i:9359565 original size:28 final size:28
Alignment explanation
Indices: 9359514--9359572 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
9359504 GGTTTAAGGG
* *
9359514 TTATGATTTAGGGTTGATGATTTATATT
1 TTATGATTTAGGGTTGAAGATTTATAAT
* *
9359542 TTATGATTTAGGGTTTAAGGTTTATAAT
1 TTATGATTTAGGGTTGAAGATTTATAAT
9359570 TTA
1 TTA
9359573 AAAGGTTAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.53
Consensus pattern (28 bp):
TTATGATTTAGGGTTGAAGATTTATAAT
Found at i:9360100 original size:7 final size:7
Alignment explanation
Indices: 9360056--9360115 Score: 52
Period size: 7 Copynumber: 8.6 Consensus size: 7
9360046 TTTTTAACAT
9360056 TTTAGGG
1 TTTAGGG
9360063 TGTTAGGG
1 T-TTAGGG
*
9360071 TTTAGAG
1 TTTAGGG
9360078 TTTAGGG
1 TTTAGGG
**
9360085 -TT-GTT
1 TTTAGGG
*
9360090 TTTAGTG
1 TTTAGGG
9360097 TTTAAGGG
1 TTT-AGGG
9360105 TTTAGGG
1 TTTAGGG
9360112 TTTA
1 TTTA
9360116 TGAGTATACA
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
5 1 0.02
6 4 0.09
7 25 0.58
8 13 0.30
ACGTcount: A:0.17, C:0.00, G:0.35, T:0.48
Consensus pattern (7 bp):
TTTAGGG
Found at i:9365835 original size:21 final size:21
Alignment explanation
Indices: 9365809--9365856 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
9365799 TCAACTGTGA
9365809 GCGGAGGCAGCAGCGAGGGAG
1 GCGGAGGCAGCAGCGAGGGAG
9365830 GCGGAGGCAGCAGCGAGGGAG
1 GCGGAGGCAGCAGCGAGGGAG
9365851 GCGGAG
1 GCGGAG
9365857 TAGAACAGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.23, C:0.19, G:0.58, T:0.00
Consensus pattern (21 bp):
GCGGAGGCAGCAGCGAGGGAG
Found at i:9366198 original size:43 final size:42
Alignment explanation
Indices: 9366151--9366326 Score: 235
Period size: 43 Copynumber: 4.1 Consensus size: 42
9366141 CTGGGCAAAC
* *
9366151 TAGCGGTGTTTTTTAAAAAAGCGTCGCTAAAAGTCCTGGTCTT
1 TAGCGGCGTTTTTTAAAAAAGCG-CGCTAAAAGTCCTGATCTT
** *
9366194 TAGCGGCGTTTTTTAAAATGGCGCTGCTAAAAATCCTGATCTT
1 TAGCGGCGTTTTTTAAAAAAGCGC-GCTAAAAGTCCTGATCTT
* *
9366237 TAGCGGCATTTTTTAAAATAGCGCCGCTAAAAGTCCTGATCTT
1 TAGCGGCGTTTTTTAAAAAAGCG-CGCTAAAAGTCCTGATCTT
* *
9366280 TAGCGGCGTTTTTTAAAAAAGCAACGCTAAAAGTCCTGGTCTT
1 TAGCGGCGTTTTTTAAAAAAGC-GCGCTAAAAGTCCTGATCTT
9366323 TAGC
1 TAGC
9366327 AGGATTACAT
Statistics
Matches: 118, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
42 1 0.01
43 116 0.98
44 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (42 bp):
TAGCGGCGTTTTTTAAAAAAGCGCGCTAAAAGTCCTGATCTT
Found at i:9371582 original size:2 final size:2
Alignment explanation
Indices: 9371575--9371604 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
9371565 GATTATAAAA
9371575 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9371605 TATGCACATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9373570 original size:4 final size:4
Alignment explanation
Indices: 9373561--9373592 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
9373551 TTTCTCTAAG
*
9373561 CATA CATA CATA CATA CATA CATG CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA
9373593 TATCATATTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.47, C:0.25, G:0.03, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:9376437 original size:2 final size:2
Alignment explanation
Indices: 9376432--9376459 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
9376422 TTAGTGTGTA
9376432 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9376460 GATGCAATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9389962 original size:22 final size:22
Alignment explanation
Indices: 9389934--9389977 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
9389924 TCCTGTCAAG
9389934 CTTGTTAGATTGTTTCCTTGTA
1 CTTGTTAGATTGTTTCCTTGTA
9389956 CTTGTTAGATTGTTTCCTTGTA
1 CTTGTTAGATTGTTTCCTTGTA
9389978 GGAAAGTTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.14, C:0.14, G:0.18, T:0.55
Consensus pattern (22 bp):
CTTGTTAGATTGTTTCCTTGTA
Found at i:9391622 original size:38 final size:38
Alignment explanation
Indices: 9391580--9391659 Score: 142
Period size: 38 Copynumber: 2.1 Consensus size: 38
9391570 AGCTACTAAC
*
9391580 TTAAGTCATTTTTAAAGGTTCTAATTTATGAGAAGAGT
1 TTAAGTCATTTTTAAAGGTTCTAATTCATGAGAAGAGT
*
9391618 TTAAGTCATTTTTAAAGGTTCTACTTCATGAGAAGAGT
1 TTAAGTCATTTTTAAAGGTTCTAATTCATGAGAAGAGT
9391656 TTAA
1 TTAA
9391660 ATGACGACAT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.41
Consensus pattern (38 bp):
TTAAGTCATTTTTAAAGGTTCTAATTCATGAGAAGAGT
Found at i:9392669 original size:20 final size:18
Alignment explanation
Indices: 9392619--9392670 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 18
9392609 ATATAAGATA
9392619 AATATTAAATTAA-ATTT
1 AATATTAAATTAATATTT
9392636 AATATTAAGA-TAATTATTTT
1 AATATTAA-ATTAA-TA-TTT
9392656 AATATTAAATTAATA
1 AATATTAAATTAATA
9392671 AAATACTATC
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
17 11 0.37
18 1 0.03
19 4 0.13
20 14 0.47
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (18 bp):
AATATTAAATTAATATTT
Found at i:9393146 original size:22 final size:21
Alignment explanation
Indices: 9393109--9393150 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
9393099 TGACTTAAAA
9393109 ATTAATTTTCTAAAAAGATCAT
1 ATTAATTTTCTAAAAA-ATCAT
* *
9393131 ATTAATTTTTTCAAAAATCA
1 ATTAATTTTCTAAAAAATCA
9393151 CTAACGTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.45, C:0.10, G:0.02, T:0.43
Consensus pattern (21 bp):
ATTAATTTTCTAAAAAATCAT
Found at i:9396862 original size:60 final size:59
Alignment explanation
Indices: 9396769--9396881 Score: 138
Period size: 60 Copynumber: 1.9 Consensus size: 59
9396759 TTTTCAAGGG
* * * * * *
9396769 CTAACTCGGATAAAAAAAAGTTTATGTCTCAATGT-GAGAACATTTGTCAAGTTTAGTGC
1 CTAACTCGGACAAAAAAAAGTTCAAGTCCCAATGTAGA-AACAATTGCCAAGTTTAGTGC
*
9396828 CTAACTTGGACAAAAAAAAGTCTCAAGTCCCAATGTAGAAACAATTGCCAAGTT
1 CTAACTCGGACAAAAAAAAGT-TCAAGTCCCAATGTAGAAACAATTGCCAAGTT
9396882 CAGAACCTTA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
59 19 0.42
60 24 0.53
61 2 0.04
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (59 bp):
CTAACTCGGACAAAAAAAAGTTCAAGTCCCAATGTAGAAACAATTGCCAAGTTTAGTGC
Found at i:9399282 original size:100 final size:100
Alignment explanation
Indices: 9399109--9399309 Score: 375
Period size: 100 Copynumber: 2.0 Consensus size: 100
9399099 AGTTTGACCC
*
9399109 TTATTTTGGCTTTTCTTTTCTTTCTTTTTAATGTGTTATCTCTTCAAACACGAGAGTGTATAGCT
1 TTATTTTGGCTTTTCTTTTCTTTCTTTTTAATCTGTTATCTCTTCAAACACGAGAGTGTATAGCT
*
9399174 TAGATTCGATGTTTATCCTTTTCCACGATTTAAAA
66 TAGATTCGATGTTTATCCGTTTCCACGATTTAAAA
*
9399209 TTATTTTGGCTTTTCTTTTCTTTCTTTTTAATCTTTTATCTCTTCAAACACGAGAGTGTATAGCT
1 TTATTTTGGCTTTTCTTTTCTTTCTTTTTAATCTGTTATCTCTTCAAACACGAGAGTGTATAGCT
9399274 TAGATTCGATGTTTATCCGTTTCCACGATTTAAAA
66 TAGATTCGATGTTTATCCGTTTCCACGATTTAAAA
9399309 T
1 T
9399310 CACTGATTTT
Statistics
Matches: 98, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
100 98 1.00
ACGTcount: A:0.22, C:0.16, G:0.12, T:0.49
Consensus pattern (100 bp):
TTATTTTGGCTTTTCTTTTCTTTCTTTTTAATCTGTTATCTCTTCAAACACGAGAGTGTATAGCT
TAGATTCGATGTTTATCCGTTTCCACGATTTAAAA
Found at i:9399673 original size:28 final size:28
Alignment explanation
Indices: 9399633--9399694 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
9399623 TAAGTTCACC
9399633 GCAAATTCTGGATTTGTACTCTTAACTT
1 GCAAATTCTGGATTTGTACTCTTAACTT
9399661 GCAAATTCTGGATTTGTACTCTTAACTT
1 GCAAATTCTGGATTTGTACTCTTAACTT
*
9399689 ACAAAT
1 GCAAAT
9399695 AGTATGTTTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (28 bp):
GCAAATTCTGGATTTGTACTCTTAACTT
Found at i:9402933 original size:12 final size:12
Alignment explanation
Indices: 9402911--9402959 Score: 50
Period size: 11 Copynumber: 4.2 Consensus size: 12
9402901 TTAATATAAA
9402911 AAAATTA-TATT
1 AAAATTATTATT
9402922 AAAATTATTATT
1 AAAATTATTATT
9402934 -AAATT-TTAATT
1 AAAATTATT-ATT
* *
9402945 ATAATTTTTATT
1 AAAATTATTATT
9402957 AAA
1 AAA
9402960 TTACATTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
10 2 0.06
11 15 0.47
12 13 0.41
13 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (12 bp):
AAAATTATTATT
Found at i:9403169 original size:46 final size:43
Alignment explanation
Indices: 9403082--9403173 Score: 114
Period size: 46 Copynumber: 2.1 Consensus size: 43
9403072 AACAACATCT
*
9403082 ATTTCATTCACCAAACACAAGAATACTATTACAGTTATATTCC
1 ATTTCATTCACCAAACACAAGAATACTAATACAGTTATATTCC
* *
9403125 ATTTCATTCAGCCAAACA-ATTGAATTACTAAATACAGTTCTATTCC
1 ATTTCATTCA-CCAAACACA-AGAA-TACT-AATACAGTTATATTCC
9403171 ATT
1 ATT
9403174 ACAATTTTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
43 11 0.26
44 10 0.24
45 4 0.10
46 17 0.40
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.35
Consensus pattern (43 bp):
ATTTCATTCACCAAACACAAGAATACTAATACAGTTATATTCC
Found at i:9406332 original size:15 final size:15
Alignment explanation
Indices: 9406308--9406378 Score: 115
Period size: 15 Copynumber: 4.7 Consensus size: 15
9406298 TAACTTCGGA
*
9406308 GGTGGCGGCTACGGT
1 GGTGGTGGCTACGGT
9406323 GGTGGTGGCTACGGT
1 GGTGGTGGCTACGGT
9406338 GGTGGTGGCTACGGT
1 GGTGGTGGCTACGGT
*
9406353 GGTGGTGGCTACGGC
1 GGTGGTGGCTACGGT
*
9406368 GGTGGAGGCTA
1 GGTGGTGGCTA
9406379 TGGAAGTGGT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 53 1.00
ACGTcount: A:0.08, C:0.15, G:0.54, T:0.23
Consensus pattern (15 bp):
GGTGGTGGCTACGGT
Found at i:9406388 original size:30 final size:30
Alignment explanation
Indices: 9406308--9406391 Score: 96
Period size: 30 Copynumber: 2.8 Consensus size: 30
9406298 TAACTTCGGA
* ** *
9406308 GGTGGCGGCTACGGTGGTGGTGGCTACGGT
1 GGTGGAGGCTACGGAAGTGGTGGCTACGGC
* **
9406338 GGTGGTGGCTACGGTGGTGGTGGCTACGGC
1 GGTGGAGGCTACGGAAGTGGTGGCTACGGC
*
9406368 GGTGGAGGCTATGGAAGTGGTGGC
1 GGTGGAGGCTACGGAAGTGGTGGC
9406392 GGTGGCTATG
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.10, C:0.14, G:0.54, T:0.23
Consensus pattern (30 bp):
GGTGGAGGCTACGGAAGTGGTGGCTACGGC
Found at i:9414108 original size:34 final size:34
Alignment explanation
Indices: 9414069--9414137 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
9414059 GTGATCTTTG
9414069 TTTTATTTTTGCAAAAGAGATGAAATGAATGCCA
1 TTTTATTTTTGCAAAAGAGATGAAATGAATGCCA
9414103 TTTTATTTTTGCAAAAGAGATGAAATGAATGCCA
1 TTTTATTTTTGCAAAAGAGATGAAATGAATGCCA
9414137 T
1 T
9414138 CTTTTTTAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.36
Consensus pattern (34 bp):
TTTTATTTTTGCAAAAGAGATGAAATGAATGCCA
Found at i:9416821 original size:22 final size:22
Alignment explanation
Indices: 9416793--9416837 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
9416783 AACCAATGTG
9416793 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
9416815 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
9416837 T
1 T
9416838 TTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:9420592 original size:22 final size:22
Alignment explanation
Indices: 9420564--9420608 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
9420554 AGGGGGAGTG
9420564 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
9420586 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
9420608 T
1 T
9420609 TTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:9420985 original size:97 final size:98
Alignment explanation
Indices: 9420819--9421015 Score: 369
Period size: 97 Copynumber: 2.0 Consensus size: 98
9420809 CCAAGTCCAA
9420819 GTAAACATACAAGTATAAGAAACCGTTTCTAAGGCAGTTTAACTCATTATAAAGATGGAGGAAAA
1 GTAAACATACAAGTATAAGAAACCGTTTCTAAGGCAGTTTAACTCATTATAAAGATGGAGGAAAA
*
9420884 GGTAATCAATTCAATAT-TTATTCTCTTTCTAT
66 GGTAATCAATTCAACATCTTATTCTCTTTCTAT
*
9420916 GTAAATATACAAGTATAAGAAACCGTTTCTAAGGCAGTTTAACTCATTATAAAGATGGAGGAAAA
1 GTAAACATACAAGTATAAGAAACCGTTTCTAAGGCAGTTTAACTCATTATAAAGATGGAGGAAAA
9420981 GGTAATCAATTCAACATCTTATTCTCTTTCTAT
66 GGTAATCAATTCAACATCTTATTCTCTTTCTAT
9421014 GT
1 GT
9421016 TGAACTCTGA
Statistics
Matches: 97, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
97 80 0.82
98 17 0.18
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.33
Consensus pattern (98 bp):
GTAAACATACAAGTATAAGAAACCGTTTCTAAGGCAGTTTAACTCATTATAAAGATGGAGGAAAA
GGTAATCAATTCAACATCTTATTCTCTTTCTAT
Found at i:9431132 original size:14 final size:15
Alignment explanation
Indices: 9431113--9431143 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
9431103 ATATATATAA
9431113 TATTTA-TTTTTTAT
1 TATTTATTTTTTTAT
9431127 TATTTATTTTTTTAT
1 TATTTATTTTTTTAT
9431142 TA
1 TA
9431144 ATCACATGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (15 bp):
TATTTATTTTTTTAT
Found at i:9439459 original size:916 final size:916
Alignment explanation
Indices: 9437688--9439522 Score: 3589
Period size: 916 Copynumber: 2.0 Consensus size: 916
9437678 AAGATTATGC
*
9437688 ATTTTTTCTTTTTTAATTTTAATTTTAATTTTCCTTCTTTCATTATTCAACTCGACCAAATAACG
1 ATTTTTTCTTTTTTAATTTTAATTTTAATTTTCCTCCTTTCATTATTCAACTCGACCAAATAACG
9437753 GATGGAAAGAAAATTACTTTTTTTTTTTTAATCTTTCCAACCAAGACACCAATGGAAGGAATATA
66 GATGGAAAGAAAATTACTTTTTTTTTTTTAATCTTTCCAACCAAGACACCAATGGAAGGAATATA
9437818 TAGATGTATATATATTTTCTATCTTTTCATCTTTCTCCTCCTCCAGTTTTCCATCATTACAATTT
131 TAGATGTATATATATTTTCTATCTTTTCATCTTTCTCCTCCTCCAGTTTTCCATCATTACAATTT
9437883 TCTTTCACCTTAAACAATCAAAGTCTAAAGGCACCTGAGTGCTCAAAATTCTCTTATGGCTATCC
196 TCTTTCACCTTAAACAATCAAAGTCTAAAGGCACCTGAGTGCTCAAAATTCTCTTATGGCTATCC
9437948 GTTCTTGGTCATCCAAATACATTGTACAAAGAGATACTAAATGATTTACCCTGGCAAATGACTCA
261 GTTCTTGGTCATCCAAATACATTGTACAAAGAGATACTAAATGATTTACCCTGGCAAATGACTCA
9438013 CGGTACCTCAAAACCCAACAACAAAGTCAAAAAATAAGTAAATCAAACCAAGATTCAATCAAAGA
326 CGGTACCTCAAAACCCAACAACAAAGTCAAAAAATAAGTAAATCAAACCAAGATTCAATCAAAGA
9438078 TAATATGTGAGAATGAATCTTTTCGAGGAAACATGGAATATGCACGGTACCTCGAAACACACTTC
391 TAATATGTGAGAATGAATCTTTTCGAGGAAACATGGAATATGCACGGTACCTCGAAACACACTTC
*
9438143 AAATCACTAGATTTCGAGTTTGGGAGCTCATGTTATGACCATTTTAGTGAAGATTGCGCGAGCAG
456 AAATCACTAGATTTCGAGTTTGGGAGCTCATGTTATGACCATTTTAGTGAAGATTGCGCGAGCAA
*
9438208 AATTACTTGATGGAATTATGACAAAAACTACGAATTTTAGACTTTTAATTCGAGTTTAAATCAAA
521 AATTACTCGATGGAATTATGACAAAAACTACGAATTTTAGACTTTTAATTCGAGTTTAAATCAAA
9438273 TTGAGTTTGGTTTTTAGGCTTAATTTTTATTTATATATGAGCCCAATATTGTATTTATTAAGTTT
586 TTGAGTTTGGTTTTTAGGCTTAATTTTTATTTATATATGAGCCCAATATTGTATTTATTAAGTTT
9438338 TATTATTTTATTATTTATTTATTCTTAATTTTAGATATTGTTTAAGTATTTTAAGTTGTTTAGGA
651 TATTATTTTATTATTTATTTATTCTTAATTTTAGATATTGTTTAAGTATTTTAAGTTGTTTAGGA
9438403 ATTTTTGTTTCTTAGTCAAACAAGAAAATTTAGTTGAAAACTACTTATTGTTTAGATTAATTAGA
716 ATTTTTGTTTCTTAGTCAAACAAGAAAATTTAGTTGAAAACTACTTATTGTTTAGATTAATTAGA
9438468 GCTTTAGTATACTTTAAAGCTCTATTTGTATGTACTTAGCTAGCCTAGCTTTTTCATTGTTCATT
781 GCTTTAGTATACTTTAAAGCTCTATTTGTATGTACTTAGCTAGCCTAGCTTTTTCATTGTTCATT
* *
9438533 AAGATACAATTGTTTTCATTAATAAGGTTTAATTAGACATTTATCCATCTATCCATCAAATCTAT
846 AAGATACAATTATTTTCATTAATAAGGTTCAATTAGACATTTATCCATCTATCCATCAAATCTAT
9438598 CGGTTT
911 CGGTTT
*
9438604 ATTTTTTCTTTTTTAATTTTAATTTTAATTTTCCTCCTTTCATTATTCAACTTGACCAAATAACG
1 ATTTTTTCTTTTTTAATTTTAATTTTAATTTTCCTCCTTTCATTATTCAACTCGACCAAATAACG
9438669 GATGGAAAGAAAATTACTTTTTTTTTTTTAATCTTTCCAACCAAGACACCAATGGAAGGAATATA
66 GATGGAAAGAAAATTACTTTTTTTTTTTTAATCTTTCCAACCAAGACACCAATGGAAGGAATATA
9438734 TAGATGTATATATATTTTCTATCTTTTCATCTTTCTCCTCCTCCAGTTTTCCATCATTACAATTT
131 TAGATGTATATATATTTTCTATCTTTTCATCTTTCTCCTCCTCCAGTTTTCCATCATTACAATTT
9438799 TCTTTCACCTTAAACAATCAAAGTCTAAAGGCACCTGAGTGCTCAAAATTCTCTTATGGCTATCC
196 TCTTTCACCTTAAACAATCAAAGTCTAAAGGCACCTGAGTGCTCAAAATTCTCTTATGGCTATCC
9438864 GTTCTTGGTCATCCAAATACATTGTACAAAGAGATACTAAATGATTTACCCTGGCAAATGACTCA
261 GTTCTTGGTCATCCAAATACATTGTACAAAGAGATACTAAATGATTTACCCTGGCAAATGACTCA
* *
9438929 CGGTACCTCAAAACCCAACAACAAAGTCAAAAACTAAGTAAATCAAACCAAGATTCAATCCAAGA
326 CGGTACCTCAAAACCCAACAACAAAGTCAAAAAATAAGTAAATCAAACCAAGATTCAATCAAAGA
9438994 TAATATGTGAGAATGAATCTTTTCGAGGAAACATGGAATATGCACGGTACCTCGAAACACACTTC
391 TAATATGTGAGAATGAATCTTTTCGAGGAAACATGGAATATGCACGGTACCTCGAAACACACTTC
9439059 AAATCACTAGATTTCGAGTTTGGGAGCTCATGTTATGACCATTTTAGTGAAGATTGCGCGAGCAA
456 AAATCACTAGATTTCGAGTTTGGGAGCTCATGTTATGACCATTTTAGTGAAGATTGCGCGAGCAA
9439124 AATTACTCGATGGAATTATGACAAAAACTACGAATTTTAGACTTTTAATTCGAGTTTAAATCAAA
521 AATTACTCGATGGAATTATGACAAAAACTACGAATTTTAGACTTTTAATTCGAGTTTAAATCAAA
9439189 TTGAGTTTGGTTTTTAGGCTTAATTTTTATTTATATATGAGCCCAATATTGTATTTATTAAGTTT
586 TTGAGTTTGGTTTTTAGGCTTAATTTTTATTTATATATGAGCCCAATATTGTATTTATTAAGTTT
9439254 TATTATTTTATTATTTATTTATTCTTAATTTTAGATATTGTTTAAGTATTTTAAGTTGTTTAGGA
651 TATTATTTTATTATTTATTTATTCTTAATTTTAGATATTGTTTAAGTATTTTAAGTTGTTTAGGA
9439319 ATTTTTGTTTCTTAGTCAAACAAGAAAATTTAGTTGAAAACTACTTATTGTTTAGATTAATTAGA
716 ATTTTTGTTTCTTAGTCAAACAAGAAAATTTAGTTGAAAACTACTTATTGTTTAGATTAATTAGA
*
9439384 GGTTTAGTATACTTTAAAGCTCTATTTGTATGTACTTAGCTAGCCTAGCTTTTTCATTGTTCATT
781 GCTTTAGTATACTTTAAAGCTCTATTTGTATGTACTTAGCTAGCCTAGCTTTTTCATTGTTCATT
9439449 AAGATACAATTATTTTCATTAATAAGGTTCAATTAGACATTTATCCATCTATCCATCAAATCTAT
846 AAGATACAATTATTTTCATTAATAAGGTTCAATTAGACATTTATCCATCTATCCATCAAATCTAT
9439514 CGGTTT
911 CGGTTT
9439520 ATT
1 ATT
9439523 CGATCCATCT
Statistics
Matches: 910, Mismatches: 9, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
916 910 1.00
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.39
Consensus pattern (916 bp):
ATTTTTTCTTTTTTAATTTTAATTTTAATTTTCCTCCTTTCATTATTCAACTCGACCAAATAACG
GATGGAAAGAAAATTACTTTTTTTTTTTTAATCTTTCCAACCAAGACACCAATGGAAGGAATATA
TAGATGTATATATATTTTCTATCTTTTCATCTTTCTCCTCCTCCAGTTTTCCATCATTACAATTT
TCTTTCACCTTAAACAATCAAAGTCTAAAGGCACCTGAGTGCTCAAAATTCTCTTATGGCTATCC
GTTCTTGGTCATCCAAATACATTGTACAAAGAGATACTAAATGATTTACCCTGGCAAATGACTCA
CGGTACCTCAAAACCCAACAACAAAGTCAAAAAATAAGTAAATCAAACCAAGATTCAATCAAAGA
TAATATGTGAGAATGAATCTTTTCGAGGAAACATGGAATATGCACGGTACCTCGAAACACACTTC
AAATCACTAGATTTCGAGTTTGGGAGCTCATGTTATGACCATTTTAGTGAAGATTGCGCGAGCAA
AATTACTCGATGGAATTATGACAAAAACTACGAATTTTAGACTTTTAATTCGAGTTTAAATCAAA
TTGAGTTTGGTTTTTAGGCTTAATTTTTATTTATATATGAGCCCAATATTGTATTTATTAAGTTT
TATTATTTTATTATTTATTTATTCTTAATTTTAGATATTGTTTAAGTATTTTAAGTTGTTTAGGA
ATTTTTGTTTCTTAGTCAAACAAGAAAATTTAGTTGAAAACTACTTATTGTTTAGATTAATTAGA
GCTTTAGTATACTTTAAAGCTCTATTTGTATGTACTTAGCTAGCCTAGCTTTTTCATTGTTCATT
AAGATACAATTATTTTCATTAATAAGGTTCAATTAGACATTTATCCATCTATCCATCAAATCTAT
CGGTTT
Found at i:9439745 original size:16 final size:16
Alignment explanation
Indices: 9439724--9439755 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
9439714 CGCACTTTAC
*
9439724 CGTATCAATGTGTACT
1 CGTATCAAGGTGTACT
9439740 CGTATCAAGGTGTACT
1 CGTATCAAGGTGTACT
9439756 TGATTGAGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (16 bp):
CGTATCAAGGTGTACT
Found at i:9455148 original size:162 final size:165
Alignment explanation
Indices: 9454927--9455233 Score: 446
Period size: 162 Copynumber: 1.9 Consensus size: 165
9454917 AAGATCACAT
9454927 CAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAG
1 CAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAG
* * ** *
9454992 GTTACAGTGGAGCAGATTGAAG-CAGAAT-CTATCTCCTG-AGATTACAGTGGAGCGGATTAAAA
66 ATTACAGCGGAGCAGATCAAAGACACAATCCTATCT-CTGAAG-TTACAGTGGAGCGGATTAAAA
9455054 T-AAGGATCTTATCTCTGAAGAAGAGATAGAATCGTG
129 TAAAGGATCTTATCTCTGAAGAAGAGATAGAATCGTG
* * * *
9455090 CAGGTCTTATTTCCCTGAG-TTACAGTGGAATAGACTGAAA-ATTTTTAGATCTTATCTCCCTGA
1 CAGGTCTTATTTCCCTGAGATTACAGTGGAACAGAC-CAAAGAATTTCAGATCTTATCTCCCTGA
* *
9455153 GATTACAGCGGAGCAGATCAAAGACACTATCCTATCTCTGAAGTTACAGTGGAGTGGATTAAAAT
65 GATTACAGCGGAGCAGATCAAAGACACAATCCTATCTCTGAAGTTACAGTGGAGCGGATTAAAAT
9455218 AAAGGATCTTATCTCT
130 AAAGGATCTTATCTCT
9455234 CTGAGGTTAC
Statistics
Matches: 128, Mismatches: 11, Indels: 9
0.86 0.07 0.06
Matches are distributed among these distances:
162 55 0.43
163 50 0.39
164 23 0.18
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (165 bp):
CAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAG
ATTACAGCGGAGCAGATCAAAGACACAATCCTATCTCTGAAGTTACAGTGGAGCGGATTAAAATA
AAGGATCTTATCTCTGAAGAAGAGATAGAATCGTG
Found at i:9455342 original size:44 final size:44
Alignment explanation
Indices: 9455264--9455388 Score: 119
Period size: 44 Copynumber: 2.8 Consensus size: 44
9455254 GTCGCATCAG
* * *** *
9455264 GTCTTATTCCCCTGAAGATGCAGTGGAATAGATTGAAACAACGAA
1 GTCTTATTCCCCTGAAGTTACAACAGAATGGATTGAAACAAC-AA
***
9455309 -TCTTATTCCCCTGAAGTTACAACAGAATGGATTGAAGTTACAA
1 GTCTTATTCCCCTGAAGTTACAACAGAATGGATTGAAACAACAA
* *
9455352 GTCATA-TCTCTCTGAAGTTACAACAGAATGGATTGAA
1 GTCTTATTC-CCCTGAAGTTACAACAGAATGGATTGAA
9455389 GTTACAAGTC
Statistics
Matches: 67, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
43 4 0.06
44 63 0.94
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (44 bp):
GTCTTATTCCCCTGAAGTTACAACAGAATGGATTGAAACAACAA
Found at i:9455344 original size:21 final size:21
Alignment explanation
Indices: 9455320--9455395 Score: 82
Period size: 21 Copynumber: 3.5 Consensus size: 21
9455310 CTTATTCCCC
9455320 TGAAGTTACAACAGAATGGAT
1 TGAAGTTACAACAGAATGGAT
* ***
9455341 TGAAGTTACAAGTCA-TATCTCT
1 TGAAGTTACAA--CAGAATGGAT
9455363 CTGAAGTTACAACAGAATGGAT
1 -TGAAGTTACAACAGAATGGAT
9455385 TGAAGTTACAA
1 TGAAGTTACAA
9455396 GTCATATCTT
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
21 24 0.56
22 6 0.14
23 13 0.30
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (21 bp):
TGAAGTTACAACAGAATGGAT
Found at i:9455389 original size:44 final size:43
Alignment explanation
Indices: 9455319--9455433 Score: 176
Period size: 44 Copynumber: 2.6 Consensus size: 43
9455309 TCTTATTCCC
9455319 CTGAAGTTACAACAGAATGGATTGAAGTTACAAGTCATATCTCT
1 CTGAAGTTACAACAGAATGGATTGAAGTTACAAGTCATATCT-T
9455363 CTGAAGTTACAACAGAATGGATTGAAGTTACAAGTCATATCTT
1 CTGAAGTTACAACAGAATGGATTGAAGTTACAAGTCATATCTT
* ** *
9455406 CTTGAAGTTGCAATGGAGTGGATTGAAG
1 C-TGAAGTTACAACAGAATGGATTGAAG
9455434 CAACATGACA
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
43 2 0.03
44 64 0.97
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.30
Consensus pattern (43 bp):
CTGAAGTTACAACAGAATGGATTGAAGTTACAAGTCATATCTT
Found at i:9455414 original size:23 final size:22
Alignment explanation
Indices: 9455340--9455414 Score: 73
Period size: 23 Copynumber: 3.4 Consensus size: 22
9455330 ACAGAATGGA
9455340 TTGAAGTTACAAGTCATATCTC
1 TTGAAGTTACAAGTCATATCTC
* ***
9455362 TCTGAAGTTACAA--CAGAATGGA
1 T-TGAAGTTACAAGTCA-TATCTC
9455384 TTGAAGTTACAAGTCATATCTTC
1 TTGAAGTTACAAGTCATATC-TC
9455407 TTGAAGTT
1 TTGAAGTT
9455415 GCAATGGAGT
Statistics
Matches: 40, Mismatches: 8, Indels: 9
0.70 0.14 0.16
Matches are distributed among these distances:
21 13 0.32
22 6 0.15
23 21 0.52
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (22 bp):
TTGAAGTTACAAGTCATATCTC
Found at i:9459882 original size:15 final size:15
Alignment explanation
Indices: 9459862--9459895 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
9459852 AAAGAAAGTC
9459862 CAAACTTAATGTCCA
1 CAAACTTAATGTCCA
*
9459877 CAAACTTAATGTCCC
1 CAAACTTAATGTCCA
9459892 CAAA
1 CAAA
9459896 ACCAGTTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.41, C:0.29, G:0.06, T:0.24
Consensus pattern (15 bp):
CAAACTTAATGTCCA
Found at i:9463117 original size:36 final size:36
Alignment explanation
Indices: 9463070--9463139 Score: 140
Period size: 36 Copynumber: 1.9 Consensus size: 36
9463060 TTTTGCAACA
9463070 CTTAGAAAATTTTCACACTTTGGAGAGTCACACGCC
1 CTTAGAAAATTTTCACACTTTGGAGAGTCACACGCC
9463106 CTTAGAAAATTTTCACACTTTGGAGAGTCACACG
1 CTTAGAAAATTTTCACACTTTGGAGAGTCACACG
9463140 GCCGTGTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (36 bp):
CTTAGAAAATTTTCACACTTTGGAGAGTCACACGCC
Found at i:9463845 original size:42 final size:42
Alignment explanation
Indices: 9463782--9463895 Score: 167
Period size: 42 Copynumber: 2.7 Consensus size: 42
9463772 CTTCGTTTTC
** * *
9463782 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
*
9463825 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
9463866 TCGATGCCATAGCCCAGCTATGGTCTTACA
1 TCGATGCCATAGCCCAGCTATGGTCTTACA
9463896 TGAATCACAT
Statistics
Matches: 65, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
41 2 0.03
42 62 0.95
43 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:9463935 original size:46 final size:45
Alignment explanation
Indices: 9463867--9463986 Score: 141
Period size: 47 Copynumber: 2.6 Consensus size: 45
9463857 ATTCATATAT
* * * *
9463867 CGATGCCATAGCCCAGCTATGGTCTTACATGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTACA-GAAGCACATATCACAC
* * * *
9463913 TGATGCCATATCCTAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTC-T-TACAGAAGCACATATCACAC
9463960 CGATGCCATATCCCAGATATGGTCTTA
1 CGATGCCATATCCCAGATATGGTCTTA
9463987 TACGAAAATC
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
45 2 0.03
46 21 0.34
47 35 0.56
48 4 0.06
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (45 bp):
CGATGCCATATCCCAGATATGGTCTTACAGAAGCACATATCACAC
Found at i:9464043 original size:31 final size:31
Alignment explanation
Indices: 9464008--9464125 Score: 191
Period size: 31 Copynumber: 3.8 Consensus size: 31
9463998 CTTGTCACTT
*
9464008 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
9464039 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
9464070 GTAGCCGGAGCTACCACTTTTCACTAATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
9464101 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
9464126 TGTCATTTGT
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 81 1.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:9464205 original size:50 final size:51
Alignment explanation
Indices: 9464101--9464229 Score: 224
Period size: 50 Copynumber: 2.5 Consensus size: 51
9464091 CACTAATCAG
* * *
9464101 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
9464152 GTAGCCGAAGCTATCACTTATCACTT-TCACTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
9464202 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
9464230 TGCCATGGTC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
50 49 0.66
51 25 0.34
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
Found at i:9467452 original size:22 final size:22
Alignment explanation
Indices: 9467404--9467452 Score: 55
Period size: 24 Copynumber: 2.1 Consensus size: 22
9467394 CATTCAAGAT
*
9467404 AAAATAATATATAAAACTTCTTTA
1 AAAATAATATATAAAAATTC--TA
9467428 AAAATAATATATAAACAATTC-A
1 AAAATAATATATAAA-AATTCTA
9467450 AAA
1 AAA
9467453 TATATAATGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 4 0.17
24 15 0.65
25 4 0.17
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.31
Consensus pattern (22 bp):
AAAATAATATATAAAAATTCTA
Found at i:9467707 original size:44 final size:43
Alignment explanation
Indices: 9467645--9467743 Score: 121
Period size: 44 Copynumber: 2.3 Consensus size: 43
9467635 AGTAATAATG
* *
9467645 AAAATAATATTAG-TATATAAATAG-AAATAAAAATATAAATAA
1 AAAATAATAGTAGAAATATAAATAGAAAATAAAAAT-TAAATAA
*
9467687 AAATATAATAGTAGAAATATAAATAGATAAATAAAAATTAGATAA
1 AAA-ATAATAGTAGAAATATAAATAGA-AAATAAAAATTAAATAA
*
9467732 ATAATAATAGTA
1 AAAATAATAGTA
9467744 TTAGAATAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
42 3 0.06
43 9 0.18
44 19 0.39
45 8 0.16
46 10 0.20
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (43 bp):
AAAATAATAGTAGAAATATAAATAGAAAATAAAAATTAAATAA
Found at i:9467718 original size:14 final size:14
Alignment explanation
Indices: 9467661--9467734 Score: 68
Period size: 12 Copynumber: 5.5 Consensus size: 14
9467651 ATATTAGTAT
*
9467661 ATAAATAGAAATA-
1 ATAAATATAAATAG
9467674 A-AAATATAAATA-
1 ATAAATATAAATAG
9467686 A-AAATAT-AATAG
1 ATAAATATAAATAG
*
9467698 TAGAAATATAAATAG
1 -ATAAATATAAATAG
*
9467713 ATAAATAAAAATTAG
1 ATAAATATAAA-TAG
9467728 ATAAATA
1 ATAAATA
9467735 ATAATAGTAT
Statistics
Matches: 53, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
11 4 0.08
12 17 0.32
13 2 0.04
14 15 0.28
15 15 0.28
ACGTcount: A:0.68, C:0.00, G:0.07, T:0.26
Consensus pattern (14 bp):
ATAAATATAAATAG
Found at i:9467728 original size:15 final size:14
Alignment explanation
Indices: 9467701--9467741 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 14
9467691 ATAATAGTAG
*
9467701 AAATATAAATAGAT
1 AAATAAAAATAGAT
9467715 AAATAAAAATTAGAT
1 AAATAAAAA-TAGAT
*
9467730 AAATAATAATAG
1 AAATAAAAATAG
9467742 TATTAGAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 11 0.46
15 13 0.54
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.27
Consensus pattern (14 bp):
AAATAAAAATAGAT
Found at i:9468563 original size:39 final size:38
Alignment explanation
Indices: 9468520--9468593 Score: 96
Period size: 38 Copynumber: 1.9 Consensus size: 38
9468510 AAATTGGCCT
* *
9468520 ATTACATAATTCTTTTTAAAAT-TATTTCATGTTTTACGA
1 ATTACATAATT-TCTTAAAAATCT-TTTCATGTTTTACGA
*
9468559 ATTACTTAATTTCTTAAAAATCTTTTCATGTTTTA
1 ATTACATAATTTCTTAAAAATCTTTTCATGTTTTA
9468594 AATAACTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
38 20 0.65
39 11 0.35
ACGTcount: A:0.32, C:0.11, G:0.04, T:0.53
Consensus pattern (38 bp):
ATTACATAATTTCTTAAAAATCTTTTCATGTTTTACGA
Found at i:9482609 original size:18 final size:20
Alignment explanation
Indices: 9482572--9482610 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
9482562 ATTGATAAAG
9482572 TAAAAATACAATTATTTAAT
1 TAAAAATACAATTATTTAAT
9482592 TAAAAATA-AATT-TTTAAT
1 TAAAAATACAATTATTTAAT
9482610 T
1 T
9482611 TTAATTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.37
19 4 0.21
20 8 0.42
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (20 bp):
TAAAAATACAATTATTTAAT
Found at i:9482624 original size:22 final size:22
Alignment explanation
Indices: 9482596--9482640 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
9482586 TTTAATTAAA
9482596 AATAAATTTTTAATTTTAATTT
1 AATAAATTTTTAATTTTAATTT
9482618 AATAAATTTTTAATTTTAATTT
1 AATAAATTTTTAATTTTAATTT
9482640 A
1 A
9482641 TTATTGCAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
AATAAATTTTTAATTTTAATTT
Found at i:9488097 original size:42 final size:43
Alignment explanation
Indices: 9488037--9488209 Score: 203
Period size: 42 Copynumber: 4.0 Consensus size: 43
9488027 CGTTTTCTCA
** *
9488037 ATGCCATAGTTCAACTATGGTCTTACAC-ATATTCACATAAT-G
1 ATGCCATAGCCCAGCTATGGTCTTACACGATATTCACAT-ATCG
* *
9488079 ATGCCATAGCCCAGCTATGGTCTTATAC-ATATTCATATATCG
1 ATGCCATAGCCCAGCTATGGTCTTACACGATATTCACATATCG
9488121 ATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATATCG
1 ATGCCATAGCCCAGCTATGGTCTTACACG--AT---AT-TCACATATCG
9488170 ATGCCATAGCCCAGCTATGGTCTTACACGA-A-TCACATATC
1 ATGCCATAGCCCAGCTATGGTCTTACACGATATTCACATATC
9488210 TCACTGATGC
Statistics
Matches: 116, Mismatches: 7, Indels: 17
0.83 0.05 0.12
Matches are distributed among these distances:
41 11 0.09
42 61 0.53
43 1 0.01
45 2 0.02
47 1 0.01
48 2 0.02
49 38 0.33
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (43 bp):
ATGCCATAGCCCAGCTATGGTCTTACACGATATTCACATATCG
Found at i:9488178 original size:49 final size:48
Alignment explanation
Indices: 9488105--9488240 Score: 195
Period size: 49 Copynumber: 2.8 Consensus size: 48
9488095 ATGGTCTTAT
*
9488105 ACATATTCATATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAATC
1 ACATA-TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACG-AATC
9488155 ACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAATC
1 ACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAATC
* * * *
9488203 ACATATCTCA-CT-GATGCCATATCCCAGATATGGTCTTA
1 ACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTA
9488241 TACAGTAGCA
Statistics
Matches: 81, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
46 24 0.30
47 1 0.01
48 13 0.16
49 38 0.47
50 5 0.06
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (48 bp):
ACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAATC
Found at i:9488236 original size:46 final size:47
Alignment explanation
Indices: 9488119--9488286 Score: 178
Period size: 47 Copynumber: 3.6 Consensus size: 47
9488109 ATTCATATAT
* * * *
9488119 CGATGCCATAGCCCAGCTATGGTCTTACAC-GTAATCACATATCACATAT
1 CGATGCCATATCCCAGATATGGTCTTACACAG-AAGCACATATCAC--AC
* * * *
9488168 CGATGCCATAGCCCAGCTATGGTCTTACAC-GAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
* * * *
9488214 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
*
9488261 CGATGCCATATCTCAGATATGGTCTT
1 CGATGCCATATCCCAGATATGGTCTT
9488287 GTACGGAAAT
Statistics
Matches: 106, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
46 27 0.25
47 36 0.34
48 12 0.11
49 31 0.29
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.28
Consensus pattern (47 bp):
CGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
Found at i:9488299 original size:95 final size:94
Alignment explanation
Indices: 9488078--9488286 Score: 225
Period size: 95 Copynumber: 2.3 Consensus size: 94
9488068 TTCACATAAT
* * * * *
9488078 GATGCCATAGCCCAGCTATGGTCTTATAC-ATAT-TCATATAT--C-GATGCCATAGCCCAGCTA
1 GATGCCATAGCCCAGATATGGTCTTACACGA-ATCACATATCTCACTGATGCCATAGCCCAGATA
* *
9488138 TGGTCTTACACGTAATCACATATCACATATC
65 TGGTCTTACACGTAAGCACATATCACA-ACC
* *
9488169 GATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCACTGATGCCATATCCCAGATAT
1 GATGCCATAGCCCAGATATGGTCTTACACGAATCACATATCTCACTGATGCCATAGCCCAGATAT
* *
9488234 GGTCTTATACAGT-AGCATATATCAC-ACC
66 GGTCTTACAC-GTAAGCACATATCACAACC
* *
9488262 GATGCCATATCTCAGATATGGTCTT
1 GATGCCATAGCCCAGATATGGTCTT
9488287 GTACGGAAAT
Statistics
Matches: 100, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
91 30 0.30
92 7 0.07
93 24 0.24
94 1 0.01
95 36 0.36
96 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.29
Consensus pattern (94 bp):
GATGCCATAGCCCAGATATGGTCTTACACGAATCACATATCTCACTGATGCCATAGCCCAGATAT
GGTCTTACACGTAAGCACATATCACAACC
Found at i:9488344 original size:31 final size:31
Alignment explanation
Indices: 9488309--9488457 Score: 237
Period size: 31 Copynumber: 4.8 Consensus size: 31
9488299 CTTGCCACTT
*
9488309 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
9488340 GTAGCCGGTA-CTACCACTTTTCACTGATCAG
1 GTAGCC-GAAGCTACCACTTTTCACTGATCAG
*
9488371 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
9488402 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
9488433 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
9488458 TGTCATTTGT
Statistics
Matches: 111, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
30 2 0.02
31 107 0.96
32 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:9488539 original size:50 final size:51
Alignment explanation
Indices: 9488433--9488561 Score: 181
Period size: 50 Copynumber: 2.5 Consensus size: 51
9488423 CACTGATCAG
* * * *
9488433 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATTAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
*
9488484 GTAGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAGATAAGT
*
9488534 GTAGCCGGAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
9488562 TGCCATGGTC
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
50 43 0.61
51 27 0.39
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
Found at i:9491664 original size:22 final size:19
Alignment explanation
Indices: 9491632--9491679 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 19
9491622 TTGTTGAGAT
9491632 ATTGATGAATTAAGCTTGAA
1 ATTGATGAATTAAG-TTGAA
*
9491652 ATTGATAGAAATTAAGTTTAA
1 ATTGAT-G-AATTAAGTTGAA
9491673 ATT-ATGA
1 ATTGATGA
9491680 TAAGGACTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 1 0.04
19 1 0.04
20 8 0.32
21 8 0.32
22 7 0.28
ACGTcount: A:0.44, C:0.02, G:0.17, T:0.38
Consensus pattern (19 bp):
ATTGATGAATTAAGTTGAA
Found at i:9493788 original size:16 final size:16
Alignment explanation
Indices: 9493767--9493799 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9493757 CTTTTTCCTT
9493767 TTTCTTTATATTT-TTA
1 TTTCTTT-TATTTATTA
9493783 TTTCTTTTATTTATTA
1 TTTCTTTTATTTATTA
9493799 T
1 T
9493800 AACTATTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTCTTTTATTTATTA
Found at i:9493816 original size:24 final size:23
Alignment explanation
Indices: 9493789--9493839 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 23
9493779 TTTATTTCTT
9493789 TTATTTATTATAACTATTAT-ATTA
1 TTATTTATTATAA--ATTATAATTA
*
9493813 TTA--TATTTTAAATTATAATTA
1 TTATTTATTATAAATTATAATTA
9493834 TTATTT
1 TTATTT
9493840 CTTAAATAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
20 5 0.22
21 7 0.30
22 7 0.30
23 1 0.04
24 3 0.13
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (23 bp):
TTATTTATTATAAATTATAATTA
Found at i:9493836 original size:21 final size:21
Alignment explanation
Indices: 9493804--9493851 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
9493794 TATTATAACT
9493804 ATTAT-ATTATTATATT-TTAA
1 ATTATAATTATTAT-TTCTTAA
9493824 ATTATAATTATTATTTCTTAA
1 ATTATAATTATTATTTCTTAA
*
9493845 ATAATAA
1 ATTATAA
9493852 GTAAATACTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 7 0.28
21 18 0.72
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (21 bp):
ATTATAATTATTATTTCTTAA
Found at i:9495915 original size:9 final size:9
Alignment explanation
Indices: 9495903--9495936 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
9495893 GAGAAAATTG
9495903 AGAGAGTTA
1 AGAGAGTTA
*
9495912 AGAGAGTTC
1 AGAGAGTTA
*
9495921 AGAGAATTA
1 AGAGAGTTA
9495930 AGAGAGT
1 AGAGAGT
9495937 AGGATTTGAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.44, C:0.03, G:0.32, T:0.21
Consensus pattern (9 bp):
AGAGAGTTA
Found at i:9496265 original size:27 final size:23
Alignment explanation
Indices: 9496214--9496266 Score: 61
Period size: 23 Copynumber: 2.1 Consensus size: 23
9496204 TAGTAATTTG
*
9496214 AATTTATTTTTAATATTTTAAAA
1 AATTTATTTTGAATATTTTAAAA
9496237 AATTTATTTTAGAATAATTATTAAGAA
1 AATTTATTTT-GAAT-ATT-TTAA-AA
9496264 AAT
1 AAT
9496267 AATTAAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 10 0.40
24 3 0.12
25 3 0.12
26 4 0.16
27 5 0.20
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (23 bp):
AATTTATTTTGAATATTTTAAAA
Found at i:9496520 original size:24 final size:22
Alignment explanation
Indices: 9496474--9496521 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
9496464 TTAAAGATAA
* *
9496474 TAAATATAATTTATCCTATTTT
1 TAAATATAATTTATCCAAATTT
9496496 TAAATATATATTTATCACAAATTT
1 TAAATATA-ATTTATC-CAAATTT
9496520 TA
1 TA
9496522 TTTTATTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 8 0.36
23 7 0.32
24 7 0.32
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (22 bp):
TAAATATAATTTATCCAAATTT
Found at i:9502299 original size:22 final size:22
Alignment explanation
Indices: 9502270--9502323 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
9502260 TAGCACGTTA
*
9502270 AGTGCTCTCTGTTTAGCAC-AT
1 AGTGCTCTCTGTATAGCACTAT
*
9502291 ATGTGCTCTCTGTATAGCACTTT
1 A-GTGCTCTCTGTATAGCACTAT
9502314 AGTGCTCTCT
1 AGTGCTCTCT
9502324 ATTCGTTTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 1 0.03
22 26 0.90
23 2 0.07
ACGTcount: A:0.17, C:0.24, G:0.19, T:0.41
Consensus pattern (22 bp):
AGTGCTCTCTGTATAGCACTAT
Found at i:9510131 original size:2 final size:2
Alignment explanation
Indices: 9510124--9510162 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
9510114 ATGGACAGGT
* * *
9510124 TC TC TC TC TC TG TC TC TT TC TC TC TC TT TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
9510163 TGGCATTTTA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.41, G:0.03, T:0.56
Consensus pattern (2 bp):
TC
Found at i:9513460 original size:13 final size:15
Alignment explanation
Indices: 9513430--9513468 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
9513420 TTTTTATACT
9513430 ATTTATATTTTTTGA
1 ATTTATATTTTTTGA
9513445 ATTTA-ATTTTTT-A
1 ATTTATATTTTTTGA
*
9513458 ATTTTTATTTT
1 ATTTATATTTT
9513469 CAAAAATTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 5 0.23
14 12 0.55
15 5 0.23
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72
Consensus pattern (15 bp):
ATTTATATTTTTTGA
Found at i:9514456 original size:14 final size:13
Alignment explanation
Indices: 9514425--9514465 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
9514415 ATATGTAACT
9514425 TTTAATATT--TA
1 TTTAATATTAATA
9514436 TTTAATATTAATA
1 TTTAATATTAATA
*
9514449 TATTAATATAAATA
1 T-TTAATATTAATA
9514463 TTT
1 TTT
9514466 TTCAATAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
11 9 0.35
13 5 0.19
14 12 0.46
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTTAATATTAATA
Found at i:9515096 original size:18 final size:18
Alignment explanation
Indices: 9515049--9515097 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 18
9515039 AAATTATAAT
9515049 AAAATTAA-TATTTAAAA
1 AAAATTAATTATTTAAAA
9515066 AAAACTATAAATTATTTAAAA
1 AAAA-T-T-AATTATTTAAAA
*
9515087 ATAATTAATTA
1 AAAATTAATTA
9515098 AGATTAAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
17 4 0.15
18 6 0.22
19 2 0.07
20 3 0.11
21 12 0.44
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (18 bp):
AAAATTAATTATTTAAAA
Found at i:9520101 original size:21 final size:21
Alignment explanation
Indices: 9520067--9520107 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
9520057 AGACGAGCGA
* * *
9520067 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTAGAGTG
9520088 TACTCCAAAACAGGTAGAGT
1 TACTCCAAAACAGGTAGAGT
9520108 TTGAGCAGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.22, G:0.27, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTAGAGTG
Found at i:9533738 original size:147 final size:147
Alignment explanation
Indices: 9533471--9533750 Score: 350
Period size: 147 Copynumber: 1.9 Consensus size: 147
9533461 AAAAGTGTTT
* * **
9533471 GAATTCAATCATGGCAGAACAGTATTCACCTTGGCATCTTTCCCCCAATCCGTAATGTAAGATAT
1 GAATTCAATCATGGCAGAACAGTATTCACCTTGGCATCTTCCCCCCAAACCGTAACATAAGATAT
*** * ** *
9533536 AACATAAATGTGAATGAAACATAGAATGTTGAATCAACGGTGAAATACATTTGCATTGTTCATTA
66 AACATAAATGTGAATGAAACATAGAATCAAGAATCAACAGCAAAAGACATTTGCATTGTTCATTA
9533601 GATAAACAAAGGCATTA
131 GATAAACAAAGGCATTA
* **
9533618 GAATTCAATCATGGCAGAGCAGTATTCATTTTGGCATCTTCCCCCCAAACCGTAACATAAGATAT
1 GAATTCAATCATGGCAGAACAGTATTCACCTTGGCATCTTCCCCCCAAACCGTAACATAAGATAT
* * * *
9533683 -AGATACAA-GTTGGAATGAAATATAGAA-CAAGAATCAATAGCAAAAGGCATTTGCATTGTTCA
66 AACATA-AATG-T-GAATGAAACATAGAATCAAGAATCAACAGCAAAAGACATTTGCATTGTTCA
9533745 TTAGAT
128 TTAGAT
9533751 GGCATTTGTG
Statistics
Matches: 112, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
146 5 0.04
147 93 0.83
148 14 0.12
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (147 bp):
GAATTCAATCATGGCAGAACAGTATTCACCTTGGCATCTTCCCCCCAAACCGTAACATAAGATAT
AACATAAATGTGAATGAAACATAGAATCAAGAATCAACAGCAAAAGACATTTGCATTGTTCATTA
GATAAACAAAGGCATTA
Found at i:9534092 original size:27 final size:27
Alignment explanation
Indices: 9534059--9534114 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
9534049 TTAATGAAGA
9534059 TAGCTTCAATTTTCACAAAATCTGCAG
1 TAGCTTCAATTTTCACAAAATCTGCAG
9534086 TAGCTTCAATTTTCACAAAATCTGCAG
1 TAGCTTCAATTTTCACAAAATCTGCAG
9534113 TA
1 TA
9534115 ACAATAAACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (27 bp):
TAGCTTCAATTTTCACAAAATCTGCAG
Found at i:9535637 original size:26 final size:26
Alignment explanation
Indices: 9535598--9535705 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
9535588 TGGTACAAAT
*
9535598 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
* *
9535624 TGGTAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
9535650 TGATAATGGATTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
9535676 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
9535702 TGAT
1 TGAT
9535706 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:9537332 original size:27 final size:28
Alignment explanation
Indices: 9537292--9537420 Score: 160
Period size: 27 Copynumber: 4.8 Consensus size: 28
9537282 AGGAAGCGTC
* *
9537292 CTGGTGGCTATGCCACAAT-TATTTGAT
1 CTGGTGGCTCTGCCACAATATATCTGAT
9537319 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAATATATCTGAT
* * *
9537345 CCTAGCGGCTATGCCACAAT-TATCTGAT
1 -CTGGTGGCTCTGCCACAATATATCTGAT
*
9537373 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAATATATCTGAT
9537400 CTGGTGGCTCTGCCACAATAT
1 CTGGTGGCTCTGCCACAATAT
9537421 CTATATCTGG
Statistics
Matches: 87, Mismatches: 9, Indels: 11
0.81 0.08 0.10
Matches are distributed among these distances:
26 5 0.06
27 75 0.86
28 7 0.08
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAATATATCTGAT
Found at i:9537373 original size:54 final size:54
Alignment explanation
Indices: 9537297--9537432 Score: 202
Period size: 54 Copynumber: 2.5 Consensus size: 54
9537287 GCGTCCTGGT
*
9537297 GGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCACATATATCTGTCCTAGC
1 GGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTAGC
* * *
9537351 GGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGT
1 GGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTAGC
* *
9537405 GGCTCTGCCACAA-TATCTATATCTGGTG
1 GGCTATGCCACAATTATCT-GATCTGGTG
9537433 ACTTCGTCAC
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
53 5 0.07
54 70 0.93
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (54 bp):
GGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTAGC
Found at i:9537429 original size:27 final size:26
Alignment explanation
Indices: 9537292--9537449 Score: 135
Period size: 27 Copynumber: 5.9 Consensus size: 26
9537282 AGGAAGCGTC
*
9537292 CTGGTGGCTATGCCACAATTAT-TTGAT
1 CTGGTGGCTCTGCCACAA-TATCTT-AT
*
9537319 CTGGTGGCTCTGCCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCT-TAT
* * * *
9537346 CTAGCGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAA-TATCTTAT
9537373 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCT-TAT
9537400 CTGGTGGCTCTGCCACAATATCTATAT
1 CTGGTGGCTCTGCCACAATATCT-TAT
* *
9537427 CTGGTGACT-TCGTCACAATATCT
1 CTGGTGGCTCT-GCCACAATATCT
9537450 GGCAGCCTCG
Statistics
Matches: 108, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
26 9 0.08
27 95 0.88
28 3 0.03
29 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.34
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATATCTTAT
Found at i:9543797 original size:25 final size:24
Alignment explanation
Indices: 9543769--9543834 Score: 73
Period size: 23 Copynumber: 2.7 Consensus size: 24
9543759 TCATGATTAC
9543769 TATATATTAGTGTATATATATTTTT
1 TATATATTA-TGTATATATATTTTT
*
9543794 TATATATATATG--TATATGTTTTT
1 TATATAT-TATGTATATATATTTTT
*
9543817 AATATATTTATGTATATA
1 TATATA-TTATGTATATA
9543835 CTTATGTAGC
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
23 19 0.54
24 1 0.03
25 13 0.37
26 2 0.06
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.58
Consensus pattern (24 bp):
TATATATTATGTATATATATTTTT
Found at i:9543809 original size:23 final size:23
Alignment explanation
Indices: 9543783--9543834 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
9543773 TATTAGTGTA
*
9543783 TATATATTTTTTATATATATATG
1 TATATATTTTTAATATATATATG
* *
9543806 TATATGTTTTTAATATATTTATG
1 TATATATTTTTAATATATATATG
9543829 TATATA
1 TATATA
9543835 CTTATGTAGC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.60
Consensus pattern (23 bp):
TATATATTTTTAATATATATATG
Found at i:9543912 original size:31 final size:30
Alignment explanation
Indices: 9543874--9543948 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 30
9543864 ATCCCTAATA
9543874 ATTATGTATTATGTAAATATTTTAATATTAT
1 ATTATGTATTATGTAAATATTTTAATA-TAT
* * **
9543905 ATTATGTA-TATCTATATATTTTCGTATAT
1 ATTATGTATTATGTAAATATTTTAATATAT
9543934 ATTATGTATATATGT
1 ATTATGTAT-TATGT
9543949 TTTCAATATT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
29 11 0.30
30 14 0.38
31 12 0.32
ACGTcount: A:0.35, C:0.03, G:0.08, T:0.55
Consensus pattern (30 bp):
ATTATGTATTATGTAAATATTTTAATATAT
Found at i:9543939 original size:29 final size:30
Alignment explanation
Indices: 9543874--9543944 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 30
9543864 ATCCCTAATA
*
9543874 ATTATGTATTATGTAAATATTTTAATATTAT
1 ATTATGTA-TATCTAAATATTTTAATATTAT
* **
9543905 ATTATGTATATCTATATATTTTCGTA-TAT
1 ATTATGTATATCTAAATATTTTAATATTAT
9543934 ATTATGTATAT
1 ATTATGTATAT
9543945 ATGTTTTCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
29 14 0.39
30 14 0.39
31 8 0.22
ACGTcount: A:0.35, C:0.03, G:0.07, T:0.55
Consensus pattern (30 bp):
ATTATGTATATCTAAATATTTTAATATTAT
Found at i:9544052 original size:19 final size:19
Alignment explanation
Indices: 9544028--9544064 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
9544018 CTATTTTATA
*
9544028 TATATTTCTAATATCATTG
1 TATATTTCTAACATCATTG
9544047 TATATTTCTAACATCATT
1 TATATTTCTAACATCATT
9544065 ATTATTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.14, G:0.03, T:0.51
Consensus pattern (19 bp):
TATATTTCTAACATCATTG
Found at i:9544151 original size:9 final size:9
Alignment explanation
Indices: 9544133--9544169 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
9544123 TCATTTCTAA
9544133 TATATATAT
1 TATATATAT
*
9544142 TATATGTAT
1 TATATATAT
*
9544151 TTTATATAT
1 TATATATAT
9544160 TATATATAT
1 TATATATAT
9544169 T
1 T
9544170 TTAATGTTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (9 bp):
TATATATAT
Found at i:9544158 original size:18 final size:18
Alignment explanation
Indices: 9544135--9544172 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
9544125 ATTTCTAATA
*
9544135 TATATATTATATGTATTT
1 TATATATTATATATATTT
9544153 TATATATTATATATATTT
1 TATATATTATATATATTT
9544171 TA
1 TA
9544173 ATGTTATTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (18 bp):
TATATATTATATATATTT
Found at i:9544462 original size:37 final size:35
Alignment explanation
Indices: 9544397--9544466 Score: 81
Period size: 37 Copynumber: 1.9 Consensus size: 35
9544387 TTATATATAG
9544397 TATTATTTTCATACATTATCATATTTATTATTATACC
1 TATTATTTTCATA-ATTATCATATTTATT-TTATACC
9544434 TATTATTTTCACT-ATTATCACT-TATTATTTTAT
1 TATTATTTTCA-TAATTATCA-TAT-TTATTTTAT
9544467 TTTAATATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
36 12 0.40
37 17 0.57
38 1 0.03
ACGTcount: A:0.30, C:0.13, G:0.00, T:0.57
Consensus pattern (35 bp):
TATTATTTTCATAATTATCATATTTATTTTATACC
Found at i:9544601 original size:25 final size:24
Alignment explanation
Indices: 9544573--9544628 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
9544563 GTTATATTTT
*
9544573 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
9544598 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
9544621 CACTATTA
1 CACTATTA
9544629 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:9555676 original size:46 final size:43
Alignment explanation
Indices: 9555571--9555677 Score: 124
Period size: 43 Copynumber: 2.4 Consensus size: 43
9555561 TGTCTTTAAC
** * * *
9555571 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATAAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATAAAT
*
9555614 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--T-AAAT
*
9555660 ATGGACTTACGTGGCTCA
1 ATGGACTTACATGGCTCA
9555678 TTTCTGTTCT
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
43 33 0.61
45 1 0.02
46 20 0.37
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (43 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATAAAT
Found at i:9569388 original size:26 final size:26
Alignment explanation
Indices: 9569359--9569426 Score: 118
Period size: 26 Copynumber: 2.6 Consensus size: 26
9569349 TGGTACAAAT
*
9569359 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
9569385 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
9569411 TGATAATGGGTTAGGT
1 TGATAATGGGTTAGGT
9569427 CACTTGGGGA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:9570775 original size:27 final size:26
Alignment explanation
Indices: 9570730--9570780 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
9570720 CTATGTATGA
** *
9570730 AAAATTATTGTTATACCCTTAGGTGT
1 AAAATTACCGTTATACCCTAAGGTGT
9570756 AAAATTACCGTTATACCCCTAAGGT
1 AAAATTACCGTTATA-CCCTAAGGT
9570781 TAATTTTGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 13 0.62
27 8 0.38
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (26 bp):
AAAATTACCGTTATACCCTAAGGTGT
Found at i:9570964 original size:27 final size:26
Alignment explanation
Indices: 9570882--9570986 Score: 113
Period size: 27 Copynumber: 3.9 Consensus size: 26
9570872 AGGAAGCGTC
*
9570882 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAA-TATCTGAT
*
9570909 CTAGTGGCTCTGCCACATATATCTGAT
1 CTGGTGGCTCTGCCACA-ATATCTGAT
* *
9570936 CTGGTGGCTCTGCCATAATATCTATAT
1 CTGGTGGCTCTGCCACAATATCT-GAT
* *
9570963 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
9570987 GCAGCCTCGC
Statistics
Matches: 66, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
26 7 0.11
27 58 0.88
28 1 0.02
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATATCTGAT
Found at i:9574377 original size:30 final size:29
Alignment explanation
Indices: 9574327--9574384 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
9574317 TAATCCACTA
*
9574327 TATAACAGTTATTTTTTATAATTTTTTAT
1 TATAACAGTTATTTTTTATAATGTTTTAT
9574356 TATAACAGTT-TTTCATTTATAATGTTTTA
1 TATAACAGTTATTT--TTTATAATGTTTTA
9574385 GTTTTACTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 3 0.12
29 10 0.38
30 13 0.50
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (29 bp):
TATAACAGTTATTTTTTATAATGTTTTAT
Found at i:9579489 original size:22 final size:22
Alignment explanation
Indices: 9579447--9579491 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
9579437 ATTTTTGTAA
**
9579447 TTTTAAAAATTTTTAAGATTTT
1 TTTTAAAAATTAGTAAGATTTT
9579469 TTTTAAAAAATTAGTAA-ATTTT
1 TTTT-AAAAATTAGTAAGATTTT
9579491 T
1 T
9579492 AAACATTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (22 bp):
TTTTAAAAATTAGTAAGATTTT
Found at i:9583273 original size:6 final size:6
Alignment explanation
Indices: 9583262--9583287 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
9583252 GATATAATTC
9583262 TTAGGG TTAGGG TTAGGG TTAGGG TT
1 TTAGGG TTAGGG TTAGGG TTAGGG TT
9583288 TAAGTTCCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.46, T:0.38
Consensus pattern (6 bp):
TTAGGG
Found at i:9583580 original size:27 final size:25
Alignment explanation
Indices: 9583522--9583583 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 25
9583512 ATATCAAAAT
*
9583522 AATAATATTTTTATCGAAAAAATAAC
1 AATAATATTTTTATC-AAAAAATAAA
9583548 AATAATATTTTTAT-AAAAAATTTAAA
1 AATAATATTTTTATCAAAAAA--TAAA
9583574 AATTAATATT
1 AA-TAATATT
9583584 ATTTGGCTGA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
24 6 0.19
26 19 0.59
27 7 0.22
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.40
Consensus pattern (25 bp):
AATAATATTTTTATCAAAAAATAAA
Found at i:9587150 original size:15 final size:15
Alignment explanation
Indices: 9587130--9587160 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
9587120 CCAACCTTCA
9587130 AATTTTACCTCAATT
1 AATTTTACCTCAATT
9587145 AATTTTACCTCAATT
1 AATTTTACCTCAATT
9587160 A
1 A
9587161 TACATAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.45
Consensus pattern (15 bp):
AATTTTACCTCAATT
Found at i:9589420 original size:11 final size:11
Alignment explanation
Indices: 9589404--9589430 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
9589394 TAGAAATTAG
9589404 TTTGTGAAACT
1 TTTGTGAAACT
9589415 TTTGTGAAACT
1 TTTGTGAAACT
9589426 TTTGT
1 TTTGT
9589431 ATTGATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:9590963 original size:93 final size:92
Alignment explanation
Indices: 9590831--9591025 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
9590821 TTGATTTTAG
* *
9590831 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
* *
9590895 TATTTAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
9590923 TAAATTCATATAAGAAAATTTTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
9590988 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
9591016 CAAATTCATA
1 TAAATTCATA
9591026 AACTATAATC
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 17 0.18
93 71 0.76
94 5 0.05
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:9591083 original size:17 final size:17
Alignment explanation
Indices: 9591058--9591091 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
9591048 ATAATTTTAA
*
9591058 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
9591075 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
9591092 TTAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:9591093 original size:15 final size:16
Alignment explanation
Indices: 9591058--9591096 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
9591048 ATAATTTTAA
*
9591058 ATTTTATTAAATCATAT
1 ATTTAATTAAATCA-AT
9591075 ATTTAATTAAATC-AT
1 ATTTAATTAAATCAAT
9591090 ATTTAAT
1 ATTTAAT
9591097 ATTAATTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.43
17 12 0.57
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (16 bp):
ATTTAATTAAATCAAT
Found at i:9591100 original size:17 final size:18
Alignment explanation
Indices: 9591062--9591101 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
9591052 TTTTAAATTT
*
9591062 TATTAAATCATATATTTA
1 TATTAAATCATATATTAA
9591080 -ATTAAATCATAT-TTAA
1 TATTAAATCATATATTAA
9591096 TATTAA
1 TATTAA
9591102 TTATTTGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (18 bp):
TATTAAATCATATATTAA
Found at i:9591216 original size:15 final size:15
Alignment explanation
Indices: 9591181--9591232 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
9591171 TTAAGAATTT
*
9591181 TATTAAATTAT-ATA
1 TATTTAATTATAATA
9591195 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
9591209 TATTTAATAATAAT-
1 TATTTAATTATAATA
9591223 TATGTTAATT
1 TAT-TTAATT
9591233 TATATTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:9591223 original size:120 final size:119
Alignment explanation
Indices: 9591049--9591347 Score: 457
Period size: 119 Copynumber: 2.5 Consensus size: 119
9591039 TTAGTTATAA
* *
9591049 TAATTTT-A-AATTTTATTAAATCATATA-TTTAATTA-AATCATATTTAATATTAATTAT-TTG
1 TAATTTTAAGAATTTTATTAAATTATATATTTTAATTATAAT-ATATTTAATAATAATTATGTT-
* * *
9591109 AAATTT-TCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATTT
64 -AATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATAT
*
9591165 TATTTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTA
1 TAATT-TTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTA
*
9591230 ATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATAT
65 ATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATAT
9591285 TAATTTTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
1 TAATTTTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
9591348 TAAATATGAT
Statistics
Matches: 168, Mismatches: 8, Indels: 11
0.90 0.04 0.06
Matches are distributed among these distances:
116 4 0.02
117 2 0.01
118 1 0.01
119 81 0.48
120 75 0.45
121 5 0.03
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (119 bp):
TAATTTTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAA
TTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATAT
Found at i:9591330 original size:16 final size:16
Alignment explanation
Indices: 9591309--9591350 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
9591299 TTATTAAATT
*
9591309 ATATATTTTAATTATA
1 ATATATTTTAATAATA
9591325 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
9591340 AT-TATGTTTAA
1 ATATAT-TTTAA
9591351 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:9591335 original size:15 final size:15
Alignment explanation
Indices: 9591300--9591341 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
9591290 TTAAGAATTT
*
9591300 TATTAAATTAT-ATA
1 TATTTAATTATAATA
9591314 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
9591328 TATTTAATAATAAT
1 TATTTAATTATAAT
9591342 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:9591461 original size:154 final size:155
Alignment explanation
Indices: 9591285--9591597 Score: 567
Period size: 154 Copynumber: 2.0 Consensus size: 155
9591275 ATAAGAATAT
*
9591285 TAATTTTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTA
1 TAATTTTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
9591350 AATATGATTAAATTATTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAACAATAACAATA
66 AATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAACAATA
9591413 ATAATTTACCAAAACAAATTTATGC
131 ATAATTTACCAAAACAAATTTATGC
9591438 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATT-TTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
9591503 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
65 AAATATGATTAAATTATTTATTATTGATAAT-ATAATCTTATTAAAATTTAAATAACAATAACAA
* *
9591568 TAATTATTTACCAAAACAAATTTCTGC
129 TAATAATTTACCAAAACAAATTTATGC
9591595 TAA
1 TAA
9591598 GGGTATTCTA
Statistics
Matches: 153, Mismatches: 3, Indels: 4
0.96 0.02 0.03
Matches are distributed among these distances:
153 5 0.03
154 86 0.56
155 2 0.01
157 60 0.39
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (155 bp):
TAATTTTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
AATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAACAATA
ATAATTTACCAAAACAAATTTATGC
Done.