Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 43 of 290
Found at i:14150474 original size:38 final size:39
Alignment explanation
Indices: 14150423--14150499 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
14150413 GGGAGAAGAG
14150423 AAGAGAAGAAAT-AAAAGGTATTTTCTTTTTTGTTATTT
1 AAGAGAAGAAATAAAAAGGTATTTTCTTTTTTGTTATTT
*
14150461 AAGAGAAGAAATAAAAATGTATTTTCTTTTTTGTTATTT
1 AAGAGAAGAAATAAAAAGGTATTTTCTTTTTTGTTATTT
14150500 TTAAATAGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
38 12 0.32
39 25 0.68
ACGTcount: A:0.38, C:0.03, G:0.14, T:0.45
Consensus pattern (39 bp):
AAGAGAAGAAATAAAAAGGTATTTTCTTTTTTGTTATTT
Found at i:14154321 original size:21 final size:20
Alignment explanation
Indices: 14154274--14154340 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 20
14154264 GTTTGTTTCA
14154274 ATTAGATTAATGTTGTAATGTA-
1 ATTA-ATTAATGTT-TAAT-TAG
*
14154296 TTTAATTAATGTTCTAATTAG
1 ATTAATTAATGTT-TAATTAG
*
14154317 ATTAA-T-ATATTTAATTAG
1 ATTAATTAATGTTTAATTAG
14154335 ATTAAT
1 ATTAAT
14154341 GTTGTAATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
18 12 0.31
19 4 0.10
20 3 0.08
21 17 0.44
22 3 0.08
ACGTcount: A:0.39, C:0.01, G:0.10, T:0.49
Consensus pattern (20 bp):
ATTAATTAATGTTTAATTAG
Found at i:14154348 original size:26 final size:26
Alignment explanation
Indices: 14154273--14154356 Score: 89
Period size: 26 Copynumber: 3.1 Consensus size: 26
14154263 AGTTTGTTTC
14154273 AATTAGATTAATGTTGTAATGTATTT
1 AATTAGATTAATGTTGTAATGTATTT
* * *
14154299 AATTAATGTTCTAAT-TAGATTAATATATTT
1 AATT-A-GAT-TAATGTTG--TAATGTATTT
14154329 AATTAGATTAATGTTGTAATGTATTT
1 AATTAGATTAATGTTGTAATGTATTT
14154355 AA
1 AA
14154357 AGTTTGTTCC
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
26 15 0.33
27 5 0.11
28 8 0.17
29 5 0.11
30 13 0.28
ACGTcount: A:0.38, C:0.01, G:0.12, T:0.49
Consensus pattern (26 bp):
AATTAGATTAATGTTGTAATGTATTT
Found at i:14183742 original size:21 final size:21
Alignment explanation
Indices: 14183711--14183762 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
14183701 TTGAGCGAGT
* * * *
14183711 TCCTGTTGCATTAGTCCCATG
1 TCCTTTTGCATGACTCCCATA
*
14183732 TCTTTTTGCATGACTCCCATA
1 TCCTTTTGCATGACTCCCATA
14183753 TCCTTTTGCA
1 TCCTTTTGCA
14183763 ATCTCGTGGT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.15, C:0.29, G:0.13, T:0.42
Consensus pattern (21 bp):
TCCTTTTGCATGACTCCCATA
Found at i:14185713 original size:6 final size:6
Alignment explanation
Indices: 14185702--14185729 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
14185692 GGAGAAAATG
14185702 GGTGGA GGTGGA GGTGGA GGTGGA GGTG
1 GGTGGA GGTGGA GGTGGA GGTGGA GGTG
14185730 CAAAACTACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.68, T:0.18
Consensus pattern (6 bp):
GGTGGA
Found at i:14196043 original size:17 final size:17
Alignment explanation
Indices: 14196017--14196065 Score: 53
Period size: 21 Copynumber: 2.6 Consensus size: 17
14196007 GAATATAATA
*
14196017 ATTTATATTTACTTAGT
1 ATTTAAATTTACTTAGT
14196034 ATTTAAATTTATCTACTTAGT
1 ATTTAAA--T-T-TACTTAGT
14196055 ATTTAAATTTA
1 ATTTAAATTTA
14196066 GAAATTGTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 2 0.07
20 1 0.04
21 15 0.56
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (17 bp):
ATTTAAATTTACTTAGT
Found at i:14196052 original size:21 final size:21
Alignment explanation
Indices: 14196026--14196065 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
14196016 AATTTATATT
14196026 TACTTAGTATTTAAATTTATC
1 TACTTAGTATTTAAATTTATC
14196047 TACTTAGTATTTAAATTTA
1 TACTTAGTATTTAAATTTA
14196066 GAAATTGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (21 bp):
TACTTAGTATTTAAATTTATC
Found at i:14197742 original size:25 final size:24
Alignment explanation
Indices: 14197713--14197787 Score: 63
Period size: 25 Copynumber: 3.3 Consensus size: 24
14197703 ATCATACTAC
14197713 TTTTTAACAATAGAAATTGATAAAA
1 TTTTTAACAATAGAAATT-ATAAAA
**
14197738 TTTTT---AATAGAAA--A-ATTA
1 TTTTTAACAATAGAAATTATAAAA
*
14197756 TTTTTAACAATAGAAATTAATGAAA
1 TTTTTAACAATAGAAATT-ATAAAA
14197781 TTTTTAA
1 TTTTTAA
14197788 TAAAAAATTA
Statistics
Matches: 38, Mismatches: 5, Indels: 14
0.67 0.09 0.25
Matches are distributed among these distances:
18 7 0.18
19 1 0.03
21 8 0.21
22 8 0.21
24 1 0.03
25 13 0.34
ACGTcount: A:0.49, C:0.03, G:0.07, T:0.41
Consensus pattern (24 bp):
TTTTTAACAATAGAAATTATAAAA
Found at i:14197761 original size:43 final size:42
Alignment explanation
Indices: 14197713--14197797 Score: 143
Period size: 43 Copynumber: 2.0 Consensus size: 42
14197703 ATCATACTAC
*
14197713 TTTTTAACAATAGAAATTGATAAAATTTTTAATAGAAAAATTA
1 TTTTTAACAATAGAAATTAATAAAATTTTTAATA-AAAAATTA
*
14197756 TTTTTAACAATAGAAATTAATGAAATTTTTAATAAAAAATTA
1 TTTTTAACAATAGAAATTAATAAAATTTTTAATAAAAAATTA
14197798 ATTTACTCTC
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
42 8 0.20
43 32 0.80
ACGTcount: A:0.52, C:0.02, G:0.06, T:0.40
Consensus pattern (42 bp):
TTTTTAACAATAGAAATTAATAAAATTTTTAATAAAAAATTA
Found at i:14204061 original size:13 final size:13
Alignment explanation
Indices: 14204043--14204069 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14204033 GCTCGACAGG
14204043 GACACACCCGTGT
1 GACACACCCGTGT
14204056 GACACACCCGTGT
1 GACACACCCGTGT
14204069 G
1 G
14204070 CAATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.37, G:0.26, T:0.15
Consensus pattern (13 bp):
GACACACCCGTGT
Found at i:14204253 original size:21 final size:21
Alignment explanation
Indices: 14204212--14204255 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
14204202 ATTTCCCATG
*
14204212 TTGGCCCATTTTCTCCATTTT
1 TTGGCCCAGTTTCTCCATTTT
*
14204233 TTGGCCC-GTTTCTCACTTTTT
1 TTGGCCCAGTTTCTC-CATTTT
14204254 TT
1 TT
14204256 ACTCTTCTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.07, C:0.27, G:0.11, T:0.55
Consensus pattern (21 bp):
TTGGCCCAGTTTCTCCATTTT
Found at i:14206150 original size:20 final size:20
Alignment explanation
Indices: 14206113--14206150 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14206103 ATAAAATATA
*
14206113 AAAATGAAATAGTATTAAAT
1 AAAATGAAAAAGTATTAAAT
14206133 AAAAT-AAAAAGTACTTAA
1 AAAATGAAAAAGTA-TTAA
14206151 CGAAGATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.63, C:0.03, G:0.08, T:0.26
Consensus pattern (20 bp):
AAAATGAAAAAGTATTAAAT
Found at i:14221420 original size:22 final size:22
Alignment explanation
Indices: 14221395--14221439 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
14221385 TATGCATTTC
*
14221395 ATGC-ATTTTCATGCCATTAATA
1 ATGCAATTATCATG-CATTAATA
*
14221417 ATGCAATTATCATGCATTTATA
1 ATGCAATTATCATGCATTAATA
14221439 A
1 A
14221440 ATCATACAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.40
Consensus pattern (22 bp):
ATGCAATTATCATGCATTAATA
Found at i:14223871 original size:14 final size:15
Alignment explanation
Indices: 14223849--14223878 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
14223839 GAATATTAAA
14223849 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
14223864 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
14223878 A
1 A
14223879 AGTCAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:14229743 original size:46 final size:46
Alignment explanation
Indices: 14229678--14229799 Score: 156
Period size: 46 Copynumber: 2.7 Consensus size: 46
14229668 TTATCTTTGA
* * *
14229678 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TAT
1 CATGATGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATAT
* * *
14229724 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGATGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
* *
14229770 CACGCTGCCATGGTATCTTTCAACCATGGT
1 CATGATGCCATGGTATCTTTCAACCATGGT
14229800 TGTAATATCC
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
45 4 0.06
46 63 0.94
ACGTcount: A:0.20, C:0.24, G:0.16, T:0.40
Consensus pattern (46 bp):
CATGATGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
Found at i:14231253 original size:45 final size:46
Alignment explanation
Indices: 14231090--14231264 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 46
14231080 TGGTTGAGCA
*
14231090 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
14231136 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
14231181 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
14231229 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
14231265 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 37 0.33
46 29 0.26
47 29 0.26
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:14238711 original size:46 final size:46
Alignment explanation
Indices: 14238661--14238836 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
14238651 TGGTTGAGCA
14238661 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
14238707 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
14238752 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
14238800 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
14238837 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:14238817 original size:93 final size:93
Alignment explanation
Indices: 14238658--14238829 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
14238648 GGATGGTTGA
* *
14238658 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
14238723 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
14238751 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
14238816 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
14238830 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:14240215 original size:46 final size:46
Alignment explanation
Indices: 14240141--14240302 Score: 243
Period size: 46 Copynumber: 3.5 Consensus size: 46
14240131 GGGCGTTACA
** ** *
14240141 ATGGTCTTATTCATTTCCCATCATGTTGCCATGGTATCTTTCAACC
1 ATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACC
** *
14240187 ATGGTCTTATTCATTTCATATCGGGTTGCCATGGTATCTTTCAACC
1 ATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACC
*
14240233 ATGGTCTTACACATTTAATATCAGGTTGCCATGGTATCTTTCAACC
1 ATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACC
14240279 ATGGTCTTACACATTTCATATCAG
1 ATGGTCTTACACATTTCATATCAG
14240303 AGAGCACACT
Statistics
Matches: 107, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 107 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.40
Consensus pattern (46 bp):
ATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACC
Found at i:14243858 original size:13 final size:13
Alignment explanation
Indices: 14243840--14243904 Score: 69
Period size: 13 Copynumber: 4.9 Consensus size: 13
14243830 AATTTGGCAA
14243840 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
14243853 TGCTTTTGAAAAAG
1 TGCTTTTG-AAAAG
*
14243867 TGC-TGTGCAAAAG
1 TGCTTTTG-AAAAG
** *
14243880 TATTTTTTAAAAG
1 TGCTTTTGAAAAG
14243893 TGCTTTTGAAAA
1 TGCTTTTGAAAA
14243905 ATTTGATTTA
Statistics
Matches: 41, Mismatches: 9, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
13 31 0.76
14 10 0.24
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:14247537 original size:23 final size:23
Alignment explanation
Indices: 14247507--14247552 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
14247497 CACTCAACTT
14247507 TAAAAAATTACAAAATGTCACTA
1 TAAAAAATTACAAAATGTCACTA
14247530 TAAAAAATTACAAAATGTCACTA
1 TAAAAAATTACAAAATGTCACTA
14247553 GATTATTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.57, C:0.13, G:0.04, T:0.26
Consensus pattern (23 bp):
TAAAAAATTACAAAATGTCACTA
Found at i:14251531 original size:20 final size:20
Alignment explanation
Indices: 14251506--14251559 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
14251496 GCAACAAAAC
*
14251506 ACAACAATAAAATAGT-AGAA
1 ACAACAGTAAAATAGTGA-AA
*
14251526 ACAACAGCAAAATAGTGAAA
1 ACAACAGTAAAATAGTGAAA
*
14251546 ACAGCAGTAAAATA
1 ACAACAGTAAAATA
14251560 CAGCAGCAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 28 0.97
21 1 0.03
ACGTcount: A:0.61, C:0.13, G:0.13, T:0.13
Consensus pattern (20 bp):
ACAACAGTAAAATAGTGAAA
Found at i:14252752 original size:27 final size:27
Alignment explanation
Indices: 14252710--14252774 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
14252700 GAAGAAGGTG
14252710 ACAGGCGGCACAGGTGGAGGCCCTG-C
1 ACAGGCGGCACAGGTGGAGGCCCTGCC
** * *
14252736 ATCAGGCGGCATTGGTGGTGGGCCTGCC
1 A-CAGGCGGCACAGGTGGAGGCCCTGCC
14252764 ACAGGCGGCAC
1 ACAGGCGGCAC
14252775 CGATAGTGTT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
26 1 0.03
27 29 0.91
28 2 0.06
ACGTcount: A:0.17, C:0.29, G:0.42, T:0.12
Consensus pattern (27 bp):
ACAGGCGGCACAGGTGGAGGCCCTGCC
Found at i:14252888 original size:3 final size:3
Alignment explanation
Indices: 14252868--14252909 Score: 52
Period size: 3 Copynumber: 14.3 Consensus size: 3
14252858 TTAATTTTGC
*
14252868 GAA GAAA GAA GGA GAA GAA GAA -AA GAA G-A GAA GAA GAA GAA G
1 GAA G-AA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
14252910 GAAAAAGAGG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
2 4 0.12
3 27 0.79
4 3 0.09
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:14252889 original size:16 final size:16
Alignment explanation
Indices: 14252868--14252911 Score: 65
Period size: 16 Copynumber: 2.8 Consensus size: 16
14252858 TTAATTTTGC
14252868 GAAGAAAGAAGGAGAA
1 GAAGAAAGAAGGAGAA
14252884 GAAGAAAAGAA-GAGAA
1 GAAG-AAAGAAGGAGAA
14252900 GAAG-AAGAAGGA
1 GAAGAAAGAAGGA
14252912 AAAAGAGGCG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 2 0.08
16 13 0.50
17 6 0.23
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (16 bp):
GAAGAAAGAAGGAGAA
Found at i:14253046 original size:3 final size:3
Alignment explanation
Indices: 14253038--14253075 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
14253028 ATTGTAGGTG
14253038 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
14253076 GATTTTGATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:14253471 original size:18 final size:18
Alignment explanation
Indices: 14253437--14253470 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
14253427 TCTTAATGAA
14253437 AAAATAAAATACGAAAAG
1 AAAATAAAATACGAAAAG
14253455 AAAA-AAAATACGAAAA
1 AAAATAAAATACGAAAA
14253471 AATAACTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.76, C:0.06, G:0.09, T:0.09
Consensus pattern (18 bp):
AAAATAAAATACGAAAAG
Found at i:14253675 original size:148 final size:149
Alignment explanation
Indices: 14253511--14254194 Score: 1067
Period size: 149 Copynumber: 4.6 Consensus size: 149
14253501 GGGTTTTTTT
*
14253511 TACTAAAATAATATAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCTGAAAATAA
1 TACTAAAATAATATAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAA
* * * * *
14253576 AAAAA-ACAAACAAAGGGCCAAGATCAGGGTTATTTACTAAATTAATATAAAAAATACTAAAATA
66 AAAAATACCAACAAAGGGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACACTTAAATA
14253640 ATACATTTGAAACATTATG
131 ATACATTTGAAACATTATG
* *
14253659 TACGAAAATAATATAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCTGAAAATAA
1 TACTAAAATAATATAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAA
* * *
14253724 AAAAATACCAACAAAGTGCCAAAATCAAGGTTATTTTTTAAATTAATATAAAAAACACTTAAATA
66 AAAAATACCAACAAAGGGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACACTTAAATA
14253789 ATACATTTGAAACATTATG
131 ATACATTTGAAACATTATG
* *
14253808 TACTAAAATAATATAAAAATAAAATACTAAAATAGTATATTTTAAAAATTAAAATCCGAAAATAA
1 TACTAAAATAATATAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAA
* * *
14253873 AAAAATACAAACAAAGGACCAAAATCAGGGTTATTTAATAAATTAAT-TAAAAAAACACTTAAAT
66 AAAAATACCAACAAAGGGCCAAAATCAGGGTTATTTATTAAATTAATAT-AAAAAACACTTAAAT
*
14253937 AATATATTTGAAACATTATG
130 AATACATTTGAAACATTATG
*
14253957 TACTAAAATAATAT--AAA-AAAATACGAAAATAATATATTTTAAAAAATAAAATCCGAAAATAA
1 TACTAAAATAATATAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAA
* * * * *
14254019 AAAAATACCAACAAATGGCCAAAATAAGGGTTATTTATTCAATTAATAT-AAATATACTTAAATA
66 AAAAATACCAACAAAGGGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACACTTAAATA
14254083 ATACATTTGAAACATTATG
131 ATACATTTGAAACATTATG
*
14254102 TACTAAAATAATATAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATCAC-AAAATA
1 TACTAAAATAATATAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATC-CGAAAAT-
*
14254166 AAAAAAAAACCAACAAAGGGCCAAAATCA
64 AAAAAAATACCAACAAAGGGCCAAAATCA
14254195 CCGAACAAAA
Statistics
Matches: 491, Mismatches: 37, Indels: 15
0.90 0.07 0.03
Matches are distributed among these distances:
145 45 0.09
146 83 0.17
147 7 0.01
148 109 0.22
149 247 0.50
ACGTcount: A:0.58, C:0.09, G:0.07, T:0.27
Consensus pattern (149 bp):
TACTAAAATAATATAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAA
AAAAATACCAACAAAGGGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACACTTAAATA
ATACATTTGAAACATTATG
Found at i:14254181 original size:20 final size:20
Alignment explanation
Indices: 14254144--14254182 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
14254134 TAGTATATTT
*
14254144 TAAAAAATAAAATCACAAAA
1 TAAAAAATAAAACCACAAAA
14254164 TAAAAAA-AAAACCAACAAA
1 TAAAAAATAAAACC-ACAAA
14254183 GGGCCAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.77, C:0.13, G:0.00, T:0.10
Consensus pattern (20 bp):
TAAAAAATAAAACCACAAAA
Found at i:14255490 original size:42 final size:41
Alignment explanation
Indices: 14255367--14255506 Score: 124
Period size: 42 Copynumber: 3.3 Consensus size: 41
14255357 GTCCCGGACG
* * * *
14255367 TGGTCTTATATGTAATTCAATATCGATGCCTCTGTCCCAGACA
1 TGGTCTTATACGAAATTC-AGATCGATGCCTGTGT-CCAGACA
*
14255410 GGGTCTTATACGAAA-TCAGATACGATG-CTGATGTTCCAGACA
1 TGGTCTTATACGAAATTCAGAT-CGATGCCTG-TG-TCCAGACA
*
14255452 TGGTCTTATACGTAAATCTCA-ATCGAGGCCTGTGTCCAGACA
1 TGGTCTTATACG-AAAT-TCAGATCGATGCCTGTGTCCAGACA
* *
14255494 CGGTCTTACACGA
1 TGGTCTTATACGA
14255507 TATCTCAAAT
Statistics
Matches: 81, Mismatches: 9, Indels: 16
0.76 0.08 0.15
Matches are distributed among these distances:
41 6 0.07
42 45 0.56
43 22 0.27
44 5 0.06
45 3 0.04
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (41 bp):
TGGTCTTATACGAAATTCAGATCGATGCCTGTGTCCAGACA
Found at i:14267740 original size:21 final size:21
Alignment explanation
Indices: 14267716--14267778 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
14267706 TAAACTATTA
14267716 ATTTTCAAAAGAAAACAGAGG
1 ATTTTCAAAAGAAAACAGAGG
*
14267737 ATTTCCAAAAGAAAACAGAGG
1 ATTTTCAAAAGAAAACAGAGG
* * *
14267758 ATTTTTAATAGAAAACTGAGG
1 ATTTTCAAAAGAAAACAGAGG
14267779 CGTCTATAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.49, C:0.10, G:0.19, T:0.22
Consensus pattern (21 bp):
ATTTTCAAAAGAAAACAGAGG
Found at i:14276786 original size:29 final size:29
Alignment explanation
Indices: 14276744--14276884 Score: 131
Period size: 29 Copynumber: 4.9 Consensus size: 29
14276734 TCATTAATCG
*
14276744 ATGGTCTTCACCATCCCTTTTCATAGTTA
1 ATGGTCGTCACCATCCCTTTTCATAGTTA
* *
14276773 ATGGCCGTCACCATCCCTTTTCATAATTA
1 ATGGTCGTCACCATCCCTTTTCATAGTTA
** * * ** * * *
14276802 ATATTTG-AAGATATCCATTTTCATATTTG
1 ATGGTCGTCA-CCATCCCTTTTCATAGTTA
* *
14276831 ATGGTCGTCACCGTCCCTTTTCATAGTTG
1 ATGGTCGTCACCATCCCTTTTCATAGTTA
*
14276860 ATGGTTGTCACCATCCCTTTTCATA
1 ATGGTCGTCACCATCCCTTTTCATA
14276885 TTCGATAGCT
Statistics
Matches: 86, Mismatches: 24, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
28 1 0.01
29 84 0.98
30 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.40
Consensus pattern (29 bp):
ATGGTCGTCACCATCCCTTTTCATAGTTA
Found at i:14276881 original size:58 final size:58
Alignment explanation
Indices: 14276684--14276886 Score: 167
Period size: 58 Copynumber: 3.5 Consensus size: 58
14276674 TGTGCTAAAC
* * ** * ** * *
14276684 GATGGTTGTAATCGTCCCTTTTCATATGAGATGGTTGAAACCATCCTTTTTCATTAATC
1 GATGGTTGTAACCATCCCTTTTCATATTTGATGGTCGTCACCATCCCTTTTCA-TAATT
* * * *
14276743 GATGGTCT-TCACCATCCCTTTTCATAGTTAATGGCCGTCACCATCCCTTTTCATAATT
1 GATGGT-TGTAACCATCCCTTTTCATATTTGATGGTCGTCACCATCCCTTTTCATAATT
* ** ** * * *
14276801 AATATTTG-AAGATATCCATTTTCATATTTGATGGTCGTCACCGTCCCTTTTCATAGTT
1 GATGGTTGTAA-CCATCCCTTTTCATATTTGATGGTCGTCACCATCCCTTTTCATAATT
*
14276859 GATGGTTGTCACCATCCCTTTTCATATT
1 GATGGTTGTAACCATCCCTTTTCATATT
14276887 CGATAGCTAA
Statistics
Matches: 108, Mismatches: 32, Indels: 9
0.72 0.21 0.06
Matches are distributed among these distances:
57 2 0.02
58 65 0.60
59 40 0.37
60 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (58 bp):
GATGGTTGTAACCATCCCTTTTCATATTTGATGGTCGTCACCATCCCTTTTCATAATT
Found at i:14276904 original size:87 final size:87
Alignment explanation
Indices: 14276743--14276912 Score: 225
Period size: 87 Copynumber: 2.0 Consensus size: 87
14276733 TTCATTAATC
* **
14276743 GATGGTCTTCACCATCCCTTTTCATAGTTAATGGCCGTCACCATCCCTTTTCATAATTAATATTT
1 GATGGTCGTCACCATCCCTTTTCATAGTTAATGGCCGTCACCATCCCTTTTCATAATTAATAGCT
*
14276808 GAAGATATCCATTTTCATATTT
66 AAAGATATCCATTTTCATATTT
* * ** *
14276830 GATGGTCGTCACCGTCCCTTTTCATAGTTGATGGTTGTCACCATCCCTTTTCAT-ATTCGATAGC
1 GATGGTCGTCACCATCCCTTTTCATAGTTAATGGCCGTCACCATCCCTTTTCATAATT-AATAGC
* *
14276894 TAAAGCTATCCCTTTTCAT
65 TAAAGATATCCATTTTCAT
14276913 TGGTCGATGA
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
86 3 0.04
87 68 0.96
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.40
Consensus pattern (87 bp):
GATGGTCGTCACCATCCCTTTTCATAGTTAATGGCCGTCACCATCCCTTTTCATAATTAATAGCT
AAAGATATCCATTTTCATATTT
Found at i:14281205 original size:27 final size:27
Alignment explanation
Indices: 14281174--14281323 Score: 162
Period size: 27 Copynumber: 5.6 Consensus size: 27
14281164 TTAGTTTATC
* *
14281174 AAATTACTGAAATACCCTCAACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
14281201 AAATTAC-CAAAGTACCCCCGATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
** *
14281228 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
14281255 AAATTA-TAGAAATACCCTC-AGTTTGCA
1 AAATTACT-GAAATACCCTCGA-TTTGTA
14281282 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
14281309 AAATTACTAAAATAC
1 AAATTACTGAAATAC
14281324 TCCTTTAAGA
Statistics
Matches: 103, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
26 4 0.04
27 93 0.90
28 6 0.06
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:14281322 original size:81 final size:82
Alignment explanation
Indices: 14281174--14281327 Score: 197
Period size: 81 Copynumber: 1.9 Consensus size: 82
14281164 TTAGTTTATC
* *
14281174 AAATTACTGAAATACCCTCAACTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAA
1 AAATTACTGAAATACCCTCAACTTGCAAAATTACCAAAGTACCCCCGATTTATAAAATTACCAAA
14281239 ATA-TCCTCGATTTGTA
66 ATACTCCTCGATTTGTA
** * * * *
14281255 AAATTA-TAGAAATACCCTCAGTTTGCAAAATTACTGAAA-TACCCTCGATTTGTAAAATTACTA
1 AAATTACT-GAAATACCCTCAACTTGCAAAATTAC-CAAAGTACCCCCGATTTATAAAATTACCA
14281318 AAATACTCCT
64 AAATACTCCT
14281328 TTAAGATAGA
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
80 1 0.02
81 54 0.87
82 7 0.11
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (82 bp):
AAATTACTGAAATACCCTCAACTTGCAAAATTACCAAAGTACCCCCGATTTATAAAATTACCAAA
ATACTCCTCGATTTGTA
Found at i:14281391 original size:54 final size:54
Alignment explanation
Indices: 14281333--14281517 Score: 298
Period size: 54 Copynumber: 3.4 Consensus size: 54
14281323 CTCCTTTAAG
* *
14281333 ATAGAATTACCATTTTACCTTCGATTTACAGAATTATCGTTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
* *
14281387 ATAGAATTACTATTTTTACCCTCAATTTACAGAATTACCGTTTTACCCTCGATTT
1 ATAGAATTACCA-TTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
* *
14281442 ATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTCTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
*
14281496 ACAGAATTACCATTTTACCCTC
1 ATAGAATTACCATTTTACCCTC
14281518 AATGTAAAAA
Statistics
Matches: 122, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
54 71 0.58
55 51 0.42
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (54 bp):
ATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
Found at i:14281532 original size:27 final size:27
Alignment explanation
Indices: 14281335--14281517 Score: 258
Period size: 27 Copynumber: 6.7 Consensus size: 27
14281325 CCTTTAAGAT
*
14281335 AGAATTACCATTTTACCTTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * *
14281362 AGAATTATCGTTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
* *
14281389 AGAATTACTATTTTTACCCTCAATTTAC
1 AGAATTACCA-TTTTACCCTCGATTTAC
* *
14281417 AGAATTACCGTTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
*
14281444 AGAATTACTATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* *
14281471 AGAATTACCGTCTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
14281498 AGAATTACCATTTTACCCTC
1 AGAATTACCATTTTACCCTC
14281518 AATGTAAAAA
Statistics
Matches: 134, Mismatches: 21, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
27 111 0.83
28 23 0.17
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:14281541 original size:27 final size:27
Alignment explanation
Indices: 14281511--14281592 Score: 71
Period size: 27 Copynumber: 3.1 Consensus size: 27
14281501 ATTACCATTT
*
14281511 TACCCTCAATGTAAAAAATTACTAAAA
1 TACCCTCAATGTAAAAAATTACCAAAA
*** * *
14281538 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCAATGTAAAAAATTACCAAAA
* *
14281565 TACCCTCGA--TCAAAAA-TACCAAAA
1 TACCCTCAATGTAAAAAATTACCAAAA
14281589 TACC
1 TACC
14281593 ATTGGTTTGT
Statistics
Matches: 45, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
24 12 0.27
25 5 0.11
27 28 0.62
ACGTcount: A:0.46, C:0.24, G:0.05, T:0.24
Consensus pattern (27 bp):
TACCCTCAATGTAAAAAATTACCAAAA
Found at i:14281542 original size:81 final size:81
Alignment explanation
Indices: 14281375--14281560 Score: 219
Period size: 81 Copynumber: 2.3 Consensus size: 81
14281365 ATTATCGTTT
* ** * * *
14281375 TACCCTCGATTTATAGAATTACTATTTTTACCCTCAATTTACAGAATTACCGTTTTACCCTCGAT
1 TACCCTCGATTTACAGAATTAC-CGTCTTACCCTCAATTTACAGAATTACCATTTTACCCTCAAT
* * * ***
14281440 TTATAGAATTACTATTT
65 GTAAAAAATTACTAAAA
*
14281457 TACCCTCGATTTACAGAATTACCGTCTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATG
1 TACCCTCGATTTACAGAATTACCGTCTTACCCTCAATTTACAGAATTACCATTTTACCCTCAATG
14281522 TAAAAAATTACTAAAA
66 TAAAAAATTACTAAAA
* * *
14281538 TACCCTTGGTTTACAAAATTACC
1 TACCCTCGATTTACAGAATTACC
14281561 AAAATACCCT
Statistics
Matches: 88, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
81 67 0.76
82 21 0.24
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.37
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTCTTACCCTCAATTTACAGAATTACCATTTTACCCTCAATG
TAAAAAATTACTAAAA
Found at i:14281614 original size:27 final size:25
Alignment explanation
Indices: 14281525--14281619 Score: 93
Period size: 27 Copynumber: 3.7 Consensus size: 25
14281515 CTCAATGTAA
*
14281525 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATA-CCTTGGTTT-C
* * *
14281552 AAAATTACCAAAATACCCTCG-ATC
1 AAAATTACCAAAATACCTTGGTTTC
* *
14281576 AAAAATACCAAAATACCATTGGTTTGT
1 AAAATTACCAAAATACC-TTGGTTT-C
14281603 AAAATTACCAAAATACC
1 AAAATTACCAAAATACC
14281620 CCTGCTTTGT
Statistics
Matches: 55, Mismatches: 10, Indels: 6
0.77 0.14 0.08
Matches are distributed among these distances:
24 17 0.31
25 3 0.05
26 5 0.09
27 30 0.55
ACGTcount: A:0.46, C:0.21, G:0.06, T:0.26
Consensus pattern (25 bp):
AAAATTACCAAAATACCTTGGTTTC
Found at i:14281635 original size:27 final size:27
Alignment explanation
Indices: 14281525--14281650 Score: 87
Period size: 27 Copynumber: 4.8 Consensus size: 27
14281515 CTCAATGTAA
* * * **
14281525 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGCTTTGT
** *
14281552 AAAATTACCAAAATA-CCCT-CGAT-C
1 AAAATTACCAAAATACCCCTGCTTTGT
* ** *
14281576 AAAAATACCAAAATACCATTGGTTTGT
1 AAAATTACCAAAATACCCCTGCTTTGT
14281603 AAAATTACCAAAATACCCCTGCTTTGT
1 AAAATTACCAAAATACCCCTGCTTTGT
** * *
14281630 GTAATTATCGAAATACCCCTG
1 AAAATTACCAAAATACCCCTG
14281651 TAGGGTAGAA
Statistics
Matches: 76, Mismatches: 20, Indels: 6
0.75 0.20 0.06
Matches are distributed among these distances:
24 15 0.20
25 3 0.04
26 4 0.05
27 54 0.71
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGCTTTGT
Found at i:14281668 original size:27 final size:27
Alignment explanation
Indices: 14281632--14282178 Score: 761
Period size: 27 Copynumber: 20.3 Consensus size: 27
14281622 TGCTTTGTGT
*
14281632 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
14281659 AATGACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
14281686 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
14281713 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
14281740 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
14281767 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
14281794 AAATACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
14281821 AATTACCAAAATACTCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
14281848 AATTACTGAAATACCCATGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
14281875 AATAACTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
14281902 GATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
14281929 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
14281956 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
14281983 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
14282010 AATAACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
14282037 AATAACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
14282064 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
14282091 AATGACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
14282118 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
14282145 AATTACCGAGATACCCTTATGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
14282172 AATTACC
1 AATTACC
14282179 ATTTTGCCCC
Statistics
Matches: 465, Mismatches: 55, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 465 1.00
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:14282628 original size:25 final size:25
Alignment explanation
Indices: 14282590--14282647 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
14282580 ATTCTGATTT
* *
14282590 TGATTCTGTTACCTGATACTAATTC
1 TGATTCTGTCACCTAATACTAATTC
** *
14282615 TGATTCTGTCACCTAATTTTGATTC
1 TGATTCTGTCACCTAATACTAATTC
14282640 TGATTCTG
1 TGATTCTG
14282648 ATTTTAGTTC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.21, C:0.19, G:0.14, T:0.47
Consensus pattern (25 bp):
TGATTCTGTCACCTAATACTAATTC
Found at i:14286456 original size:414 final size:413
Alignment explanation
Indices: 14285678--14286504 Score: 1271
Period size: 414 Copynumber: 2.0 Consensus size: 413
14285668 GCAACAATAT
* * *
14285678 TTTCGAAGATTGGTCTGAGATCTAGTTATTATCAATTGCGGGTTAAAGATTCGGATGTGCCAAAA
1 TTTCGAAGATTGATCTGAGATCTAGTTATTATCAATTGCGAGATAAAGATTCGGATGTGCCAAAA
* * * *
14285743 AATACGTTCAAAACCCGGTACGGGCATTATGAATTTCTTGTTTTCCATTTGGGTTAACTAACGCT
66 AATACGATCAAAACCAGGTACAGGCATTATGAATTTCTTGTTTGCCATTTGGGTTAACTAACGCT
* * * *
14285808 CATGTAGTTTTTATGGACTTAACGAATAGAATTTTTAGACTGCATTTAGATAGATTTGTAGTTGT
131 CATGTAATTTTTATGGACTTAACGAATAGAATTTTCAGACTGCATTTAGACAAATTTGTAGTTGT
***
14285873 ATTCTTTGATGACATACTAATCTATTCTCGATACAAATCTGAGCATGTTGAGCATTTGAGGATTG
196 ATTCTTTGATGACATACTAATCTATTCTCGATACAAATCTGAGCATGCCAAGCATTTGAGGATTG
* *
14285938 TGTTACAAACATTGAGAGATAAGCAGCTATTTGCTAAATTTAGTAAATTCGAATTTTGGCTCTGG
261 TATTACAAACATTGAGAGATAAGCAGCTATTTGCTAAATTTAGTAAATGCGAATTTTGGCTCTGG
** *
14286003 AAAGTTGGATTTTTAGGACACATTGTTTCGGCGGAAGGCACCAGAGTTGATCCGAGCAAGATGTT
326 AAAGTTAAATTTTTAGGACACATTGTTTCGGCAGAAGGCACCAGAGTTGATCCGAGCAAGAT-TT
14286068 -AGCGGTTGTTGACTGGAAAACAC
390 CAGCGGTTGTTGACTGGAAAACAC
* * * * * *
14286091 TTTCGAAGATTTATCTGAGATCTGGTTATTATCAGTTGCGAGATAAAGATTTGGATGTGTCAGAA
1 TTTCGAAGATTGATCTGAGATCTAGTTATTATCAATTGCGAGATAAAGATTCGGATGTGCCAAAA
* * * *
14286156 ACTGCGATCAAAACTAGGTACAGGCATTATGAATTTCTTGTTATGCCGTTTGGGTTAACTAACGC
66 AATACGATCAAAACCAGGTACAGGCATTATGAATTTCTTGTT-TGCCATTTGGGTTAACTAACGC
* *
14286221 TCTTGTAATTTTTATGGACTTAACGAATAGAATTTTCAGACTGTATTTAGACAAATTTGTAGTTG
130 TCATGTAATTTTTATGGACTTAACGAATAGAATTTTCAGACTGCATTTAGACAAATTTGTAGTTG
14286286 TATTCTTTGATGACATAC-AGATCTATTCTCGATACAAATCTGAGCATGCCAAGCATTTGAGGAT
195 TATTCTTTGATGACATACTA-ATCTATTCTCGATACAAATCTGAGCATGCCAAGCATTTGAGGAT
*
14286350 TGTATTACAAACATTGAGAGATAAGCAGCTGTTTGCTAAATTTAGTAAATGCGAATTTTGGCTCT
259 TGTATTACAAACATTGAGAGATAAGCAGCTATTTGCTAAATTTAGTAAATGCGAATTTTGGCTCT
* * ** * *
14286415 GGGAAGTTAAATTTTTGGGACACATTGTTTTTGCAGAAGGCATCAGTGTTGATCCGAGCAAGATT
324 GGAAAGTTAAATTTTTAGGACACATTGTTTCGGCAGAAGGCACCAGAGTTGATCCGAGCAAGATT
14286480 TCAGCGGTTGTTGACTGGAAAACAC
389 TCAGCGGTTGTTGACTGGAAAACAC
14286505 CAAGAAATGT
Statistics
Matches: 373, Mismatches: 38, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
413 95 0.25
414 278 0.75
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (413 bp):
TTTCGAAGATTGATCTGAGATCTAGTTATTATCAATTGCGAGATAAAGATTCGGATGTGCCAAAA
AATACGATCAAAACCAGGTACAGGCATTATGAATTTCTTGTTTGCCATTTGGGTTAACTAACGCT
CATGTAATTTTTATGGACTTAACGAATAGAATTTTCAGACTGCATTTAGACAAATTTGTAGTTGT
ATTCTTTGATGACATACTAATCTATTCTCGATACAAATCTGAGCATGCCAAGCATTTGAGGATTG
TATTACAAACATTGAGAGATAAGCAGCTATTTGCTAAATTTAGTAAATGCGAATTTTGGCTCTGG
AAAGTTAAATTTTTAGGACACATTGTTTCGGCAGAAGGCACCAGAGTTGATCCGAGCAAGATTTC
AGCGGTTGTTGACTGGAAAACAC
Found at i:14288967 original size:27 final size:26
Alignment explanation
Indices: 14288923--14288974 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
14288913 CTCGCTGCAA
*
14288923 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
14288950 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
14288975 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:14289065 original size:27 final size:26
Alignment explanation
Indices: 14289013--14289071 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
14289003 CCACATATAT
*
14289013 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
14289039 ATATCTGTATCTGGTGACTTTGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
14289066 ATATCT
1 ATATCT
14289072 AGCAGCCTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:14295980 original size:31 final size:32
Alignment explanation
Indices: 14295942--14296003 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
14295932 CTCGCTGCAA
* *
14295942 TCTGGTGGCTTCGCCAC-ATATATATATCTGT
1 TCTGGTGGCCTAGCCACAATATATATATCTGT
*
14295973 TCTGGTGGCCTAGCCACAATATCTATATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
14296004 GTGACTTGGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.35
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:14307071 original size:73 final size:73
Alignment explanation
Indices: 14306950--14307098 Score: 280
Period size: 73 Copynumber: 2.0 Consensus size: 73
14306940 CTAATTATAG
14306950 TAAGTAAAACTTGGTCATCACTAATTAAAATAGAAAATATTTACGTGGTTGTAATTTGGCCTTAC
1 TAAGTAAAACTTGGTCATCACTAATTAAAATAGAAAATATTTACGTGGTTGTAATTTGGCCTTAC
14307015 TCTCTTTA
66 TCTCTTTA
* *
14307023 TAAGTAAAACTTGGTCATCACTAATTAAAATAGAAAATATTTAGGTGGTTGTAATTTGGCCTTAT
1 TAAGTAAAACTTGGTCATCACTAATTAAAATAGAAAATATTTACGTGGTTGTAATTTGGCCTTAC
14307088 TCTCTTTA
66 TCTCTTTA
14307096 TAA
1 TAA
14307099 ATGAAGGTTT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 74 1.00
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.39
Consensus pattern (73 bp):
TAAGTAAAACTTGGTCATCACTAATTAAAATAGAAAATATTTACGTGGTTGTAATTTGGCCTTAC
TCTCTTTA
Found at i:14323064 original size:23 final size:23
Alignment explanation
Indices: 14323007--14323089 Score: 97
Period size: 23 Copynumber: 3.9 Consensus size: 23
14322997 TGATCAGTAA
14323007 ACGACACAT-AAGTGCCTGAAAT
1 ACGACACATAAAGTGCCTGAAAT
*
14323029 --GACAC---AAGAGCCTGAAAT
1 ACGACACATAAAGTGCCTGAAAT
* *
14323047 ACGTCACATAAAGTGCCTGATAT
1 ACGACACATAAAGTGCCTGAAAT
14323070 ACGACACATAAAGTGCCTGA
1 ACGACACATAAAGTGCCTGA
14323090 TCGGCAAAGC
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
18 12 0.24
20 9 0.18
23 30 0.59
ACGTcount: A:0.40, C:0.23, G:0.19, T:0.18
Consensus pattern (23 bp):
ACGACACATAAAGTGCCTGAAAT
Found at i:14326222 original size:21 final size:19
Alignment explanation
Indices: 14326197--14326251 Score: 56
Period size: 23 Copynumber: 2.7 Consensus size: 19
14326187 CACGGCCTGA
14326197 TCACACGGCCGTGCCTCTG
1 TCACACGGCCGTGCCTCTG
* *
14326216 TACCACATAGGCGTGTGCCTCTG
1 T--CACA-CGGC-CGTGCCTCTG
14326239 TCACACGGCCGTG
1 TCACACGGCCGTG
14326252 TGTTACTCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
19 4 0.14
20 3 0.11
21 8 0.29
22 3 0.11
23 10 0.36
ACGTcount: A:0.15, C:0.36, G:0.27, T:0.22
Consensus pattern (19 bp):
TCACACGGCCGTGCCTCTG
Found at i:14326252 original size:21 final size:21
Alignment explanation
Indices: 14326197--14326253 Score: 57
Period size: 21 Copynumber: 2.7 Consensus size: 21
14326187 CACGGCCTGA
14326197 TCACACGGCC--GTGCCTCTG
1 TCACACGGCCGTGTGCCTCTG
*
14326216 TACCACATAGG-CGTGTGCCTCTG
1 T--CACA-CGGCCGTGTGCCTCTG
14326239 TCACACGGCCGTGTG
1 TCACACGGCCGTGTG
14326254 TTACTCTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
19 1 0.03
20 2 0.07
21 15 0.50
22 2 0.07
23 10 0.33
ACGTcount: A:0.14, C:0.35, G:0.28, T:0.23
Consensus pattern (21 bp):
TCACACGGCCGTGTGCCTCTG
Found at i:14337874 original size:17 final size:17
Alignment explanation
Indices: 14337849--14337883 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
14337839 AATAAACATT
*
14337849 TAAAGTTATAATAGATG
1 TAAACTTATAATAGATG
14337866 TAAACTTATAATAGATG
1 TAAACTTATAATAGATG
14337883 T
1 T
14337884 CCAACAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.46, C:0.03, G:0.14, T:0.37
Consensus pattern (17 bp):
TAAACTTATAATAGATG
Found at i:14346719 original size:73 final size:73
Alignment explanation
Indices: 14346538--14347048 Score: 681
Period size: 73 Copynumber: 6.9 Consensus size: 73
14346528 GCTTTCAAGG
* * * * *
14346538 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
14346603 GTTTTTC-
66 GTTTGTCA
*
14346610 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
14346675 GTTTGTCA
66 GTTTGTCA
* *
14346683 AAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
14346748 GTTTGTCA
66 GTTTGTCA
* * **
14346756 AAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTCTTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
* *
14346820 TCTGTTCGTAAAAA
63 TCTGTTTGT---CA
* * *
14346834 AAAATTAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGACACGCTGAGGT-ATGTTAAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT-TTCAATTTC
14346898 TGTTT-TCA
65 TGTTTGTCA
* *
14346906 AAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
14346971 GTTTGTCA
66 GTTTGTCA
* * **
14346979 AAAATCAACTCATCTTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTCTTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
14347043 TCTGTT
63 TCTGTT
14347049 CTTCAATTTC
Statistics
Matches: 393, Mismatches: 32, Indels: 25
0.87 0.07 0.06
Matches are distributed among these distances:
72 132 0.34
73 145 0.37
75 54 0.14
76 23 0.06
78 37 0.09
79 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (73 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTGTCA
Found at i:14347055 original size:14 final size:14
Alignment explanation
Indices: 14347036--14347063 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
14347026 CTGAGGTCTT
14347036 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
14347050 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
14347064 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:14347191 original size:75 final size:74
Alignment explanation
Indices: 14347069--14347293 Score: 337
Period size: 75 Copynumber: 3.0 Consensus size: 74
14347059 TGTTCGTAAA
* * *
14347069 AAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTCAATTT
14347134 CTGTTTTTC
66 CTGTTTTTC
*
14347143 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA-ATTTCAATT
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTCAATT
*
14347207 TCTGTTTGTC
65 TCTGTTTTTC
* * *
14347217 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGT-CTTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTATTTTTCAAT
14347281 TTCTGTTTTTC
64 TTCTGTTTTTC
14347292 AA
1 AA
14347294 TTTCTGTTCG
Statistics
Matches: 138, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
73 40 0.29
74 16 0.12
75 82 0.59
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (74 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTCAATTT
CTGTTTTTC
Found at i:14347195 original size:164 final size:163
Alignment explanation
Indices: 14346905--14347212 Score: 483
Period size: 164 Copynumber: 1.9 Consensus size: 163
14346895 TTCTGTTTTC
* * *
14346905 AAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATAAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACACGCTGAGGTAATTTAAATTTC
* * **
14346970 TGTTTGTCAAAAATCAACTCATCTTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
66 TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGC-CACACGCTGAGGTAA
14347035 TTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAA
130 TTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAA
* *
14347069 AAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATAAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACACGCTGAGGTA-ATTTAAATTT
* *
14347134 CTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-GACACGCTGAGGTA
65 CTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCCACACGCTGAGGTA
14347198 ATTTCAATTTCTGTT
129 ATTTCAATTTCTGTT
14347213 TGTCAAAAAT
Statistics
Matches: 131, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
164 76 0.58
165 16 0.12
166 39 0.30
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (163 bp):
AAAAATAAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACACGCTGAGGTAATTTAAATTTC
TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCCACACGCTGAGGTAAT
TTCAATTTCTGTTCTTCAATTTCTGTTCGTAAA
Found at i:14347230 original size:239 final size:237
Alignment explanation
Indices: 14346811--14347852 Score: 1217
Period size: 239 Copynumber: 4.4 Consensus size: 237
14346801 TGCTGAGGTC
* *
14346811 TTTTCAATTTCTGTTCGTAAAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGAC
1 TTTTCAATTTCTGTTCGT-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
* *
14346876 ACGCTGAGGTA-TGTTAAATTTCTG-TTTTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAG
65 ACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
*
14346939 CCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATCTTGCGAGAGGT
130 CCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGT
14347004 GAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTG
195 GAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTG
*
14347047 TTCTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGAC
1 TT-TTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
14347112 ACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
65 ACGCTGAGGTATTTTTAAATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
14347177 GCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGG
129 GCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGG
14347242 TGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTG
194 TGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTG
14347286 TTTTTCAATTTCTGTTCGTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
1 -TTTTCAATTTCTGTTCGT--AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
* * *
14347351 AGACGCTGAGGTATTTTTAAATTTTTGTTTTTCAAAAATCAACTCATATTGCGATAGGTGA-TTG
63 ACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * * *
14347415 AGCCTTGGGGCACGC-GAGGTATTGTCAATTTTGTGTTTCAATTTATGTTTTTCAAAAATCAACT
128 AGCCTCGGGACACGCTGA-G----GT-AA-------TTTCAATTTCTGTTTGTCAAAAATCAACT
* *
14347479 CATATTGCGAGATGTGAGTTGAGCCTCGG--GACATGCTGAGG-----T-AA--T-TG
180 CATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTG
* * * * * *
14347526 ----CAATTTCTATT-GTCAAAAAAATCAATTCATATTGCAAGAAGTGAGTTGAGCCTC-GGCTC
1 TTTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-AC
* * *
14347585 ACGTGCTGAGGTATTTTCAATTTTTGTTTCTGTTTGTC-AAAATCAACTCATATTGCGAGAGGTG
65 AC--GCTGAGGTATTTTTAA-----ATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTG
* * * *
14347649 CGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTCTGTTTTTTCAAAAATCAACTCATATTG
123 AGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTG-TTTGTCAAAAATCAACTCATATTG
* ** ** * * *
14347714 CAAGAGGTGAGTTGAGCCTCGGGGCAC--GCTGAGGAATTGTCGATTTTTG
187 CGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTG
* ** * * *
14347763 TGTTTTAA----T-TTCAAAAAAATAAATCAACTGATATTGTGAGAGGTGAATTGAGCCTCAGGA
1 T-TTTCAATTTCTGTTCGTAAAAA-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
*
14347823 CACGCTGAGGTA-TTTTCAATTTCTGTTTTT
64 CACGCTGAGGTATTTTTAAATTTCTGTTTTT
14347853 TTCCAATTTC
Statistics
Matches: 703, Mismatches: 53, Indels: 105
0.82 0.06 0.12
Matches are distributed among these distances:
227 11 0.02
228 51 0.07
230 2 0.00
231 12 0.02
232 39 0.06
233 1 0.00
234 20 0.03
235 12 0.02
236 61 0.09
237 41 0.06
238 37 0.05
239 231 0.33
240 35 0.05
241 75 0.11
242 2 0.00
243 4 0.01
244 3 0.00
249 11 0.02
251 55 0.08
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (237 bp):
TTTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
CGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
CTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTG
AGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTG
Found at i:14347292 original size:14 final size:14
Alignment explanation
Indices: 14347273--14347301 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
14347263 TGCTGAGGTC
14347273 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
14347287 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
14347301 T
1 T
14347302 CGTAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:14347411 original size:74 final size:72
Alignment explanation
Indices: 14347310--14347455 Score: 172
Period size: 74 Copynumber: 2.0 Consensus size: 72
14347300 TTCGTAAAAA
* *
14347310 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAGACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTA-TTTTCAATTT
*
14347375 TTGTTTTTC
64 CTGTTTTTC
* * * *
14347384 AAAAATCAACTCATATTGCGATAGGTGA-TTGAGCCTTGGGGCACGC-GAGGTATTGTCAATTT-
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCGGACACGCTGAGGTATTTTCAATTTC
*
14347446 TGTGTTTC
65 TGTTTTTC
14347454 AA
1 AA
14347456 TTTATGTTTT
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
70 9 0.14
71 8 0.12
72 6 0.09
73 13 0.20
74 28 0.44
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (72 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTTTCAATTTCT
GTTTTTC
Found at i:14347639 original size:80 final size:73
Alignment explanation
Indices: 14347450--14347735 Score: 324
Period size: 74 Copynumber: 3.8 Consensus size: 73
14347440 CAATTTTGTG
* * *
14347450 TTTCAATTTATG-TTTTTCAAAAATCAACTCATATTGCGAGATGTGAGTTGAGCCTCGGGACATG
1 TTTCAATTTCTGTTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-GGACATG
14347514 CTGAGGTAA
65 CTGAGGTAA
* * * *** * * *
14347523 TTGCAATTTCTATTGTCAAAAAAATCAATTCATATTGCAAGAAGTGAGTTGAGCCTCGGCTCACG
1 TTTCAATTTCTGTTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGG---ACA
*
14347588 TGCTGAGGTAT
63 TGCTGAGGTAA
* * *
14347599 TTTCAATTTTTGTTTCTGTTTGTC-AAAATCAACTCATATTGCGAGAGGTGCGTTGAGCCTCAGG
1 TTTCAATTTCTG--T-T-TTT-TCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-GG
14347663 ACATGCTGAGGTAA
60 ACATGCTGAGGTAA
14347677 TTTCAATTTCTGTTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGG
1 TTTCAATTTCTGTTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGG
14347736 GGCACGCTGA
Statistics
Matches: 174, Mismatches: 28, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
73 15 0.09
74 75 0.43
75 1 0.01
76 22 0.13
78 24 0.14
79 1 0.01
80 34 0.20
81 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (73 bp):
TTTCAATTTCTGTTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGACATGC
TGAGGTAA
Found at i:14347833 original size:159 final size:158
Alignment explanation
Indices: 14347143--14347853 Score: 748
Period size: 154 Copynumber: 4.5 Consensus size: 158
14347133 TCTGTTTTTC
*
14347143 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
* * *
14347208 CTG-TTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGT
66 CTGTTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCGCAC-TGCTGAGGT
* * *
14347272 CTTTTCAATTTCTGTTTTTCAATTTCTGTTCGTAAAA
130 ATTGTCAATTTTTGTTTTT-AA----T-TTC--AAAA
* * *
14347309 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAGACGCTGAGGTATTTTTAAATT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-ATTTCAATT
* * * * *
14347374 TTTG-TTTTTCAAAAATCAACTCATATTGCGATAGGTGA-TTGAGCCTTGGGGCAC-GC-GAGGT
65 TCTGTTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCGCACTGCTGAGGT
* ***
14347435 ATTGTCAA-TTTTGTGTTTCAATTT-ATGTTTTT
130 ATTGTCAATTTTTGT-TTTTAATTTCA----AAA
* * * * *
14347467 CAAAAATCAACTCATATTGCGAGATGTGAGTTGAGCCTCGGGACATGCTGAGGTAATTGCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
* * *** * * *
14347532 CTATTGTCAAAAAAATCAATTCATATTGCAAGAAGTGAGTTGAGCCTCGGCTCACGTGCTGAGGT
66 CTGTTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCGCAC-TGCTGAGGT
* * **
14347597 ATTTTCAATTTTTGTTTCTGTTTGTC----
130 ATTGTCAATTTTTGTTTTTAATT-TCAAAA
* *
14347623 --AAAATCAACTCATATTGCGAGAGGTGCGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
* *
14347686 CTGTTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCAC-GCTGAGGAA
66 CTGTTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCGCACTGCTGAGGTA
*
14347750 TTGTCGATTTTTGTGTTTTAATTTCAAAA
131 TTGTCAATTTTTGT-TTTTAATTTCAAAA
* * * *
14347779 AAATAAATCAACTGATATTGTGAGAGGTGAATTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
1 AAA-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
14347844 TCTGTTTTTT
65 TCTGTTTTTT
14347854 TCCAATTTCT
Statistics
Matches: 455, Mismatches: 68, Indels: 51
0.79 0.12 0.09
Matches are distributed among these distances:
152 22 0.05
153 5 0.01
154 106 0.23
157 10 0.02
158 78 0.17
159 78 0.17
161 2 0.00
162 23 0.05
163 21 0.05
164 2 0.00
166 66 0.15
167 42 0.09
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (158 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
CTGTTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCGCACTGCTGAGGTA
TTGTCAATTTTTGTTTTTAATTTCAAAA
Found at i:14347861 original size:17 final size:17
Alignment explanation
Indices: 14347835--14347869 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
14347825 CGCTGAGGTA
14347835 TTTTCAATTTCTG-TTT
1 TTTTCAATTTCTGCTTT
14347851 TTTTCCAATTTCTGCTTT
1 TTTT-CAATTTCTGCTTT
14347869 T
1 T
14347870 CAAAATATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
17 9 0.53
18 4 0.24
ACGTcount: A:0.11, C:0.17, G:0.06, T:0.66
Consensus pattern (17 bp):
TTTTCAATTTCTGCTTT
Found at i:14348165 original size:77 final size:74
Alignment explanation
Indices: 14348004--14348255 Score: 276
Period size: 75 Copynumber: 3.4 Consensus size: 74
14347994 AGAGGTGAGT
* * * **
14348004 TGAGCCTTTT-AATTTCTGTTTTTTAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTTG
1 TGAGGCTTTTCAATTTCTGCTTTTTAAAAATCAACTCATATTGTGAGAAGTGAGTTGAGCCTCAG
* **
14348068 CTCACGTGC
66 GTCACACGC
* *
14348077 TGA-GCTATTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGTGAGATGTGAGTTGAGCC
1 TGAGGC--TTTTCAATTTCTGCTTTT-TAAA-AATCAACTCATATTGTGAGAAGTGAGTTGAGCC
*
14348141 TCGGGTCACACGC
62 TCAGGTCACACGC
* * *
14348154 TGAGGCGTTTTCAATTTCTGCTTTTTAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGTCGCA
1 TGAGGC-TTTTCAATTTCTGCTTTTTAAAAATCAACTCATATTGTGAGAAGTGAGTTGAGCCTCA
* *
14348219 GGCCACACAC
65 GGTCACACGC
*
14348229 TGAGGTCTTTTCAAATTCTG-TTTTTAA
1 TGAGG-CTTTTCAATTTCTGCTTTTTAA
14348256 TTTCTGCTTT
Statistics
Matches: 153, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
72 1 0.01
73 3 0.02
74 11 0.07
75 69 0.45
76 7 0.05
77 60 0.39
78 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (74 bp):
TGAGGCTTTTCAATTTCTGCTTTTTAAAAATCAACTCATATTGTGAGAAGTGAGTTGAGCCTCAG
GTCACACGC
Found at i:14348266 original size:14 final size:13
Alignment explanation
Indices: 14348236--14348279 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
14348226 CACTGAGGTC
*
14348236 TTTTCAAATTCTG
1 TTTTCAATTTCTG
*
14348249 TTTTTAATTTCTG
1 TTTTCAATTTCTG
*
14348262 CTTTTCAATTTCTA
1 -TTTTCAATTTCTG
14348276 TTTT
1 TTTT
14348280 TTCAATTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
13 15 0.58
14 11 0.42
ACGTcount: A:0.18, C:0.14, G:0.05, T:0.64
Consensus pattern (13 bp):
TTTTCAATTTCTG
Found at i:14348280 original size:14 final size:14
Alignment explanation
Indices: 14348236--14348298 Score: 65
Period size: 14 Copynumber: 4.5 Consensus size: 14
14348226 CACTGAGGTC
* *
14348236 TTTTCAAATTCTGT
1 TTTTCAATTTCTAT
**
14348250 TTTT-AATTTCTGC
1 TTTTCAATTTCTAT
14348263 TTTTCAATTTCTATT
1 TTTTCAATTTCTA-T
*
14348278 TTTTCAATTTATAT
1 TTTTCAATTTCTAT
14348292 TTTTCAA
1 TTTTCAA
14348299 AAATCAACTC
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
13 11 0.26
14 19 0.45
15 12 0.29
ACGTcount: A:0.22, C:0.13, G:0.03, T:0.62
Consensus pattern (14 bp):
TTTTCAATTTCTAT
Found at i:14348283 original size:15 final size:15
Alignment explanation
Indices: 14348263--14348295 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
14348253 TAATTTCTGC
*
14348263 TTTTCAATTTCTATT
1 TTTTCAATTTATATT
14348278 TTTTCAATTTATATT
1 TTTTCAATTTATATT
14348293 TTT
1 TTT
14348296 CAAAAATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTCAATTTATATT
Found at i:14349121 original size:59 final size:60
Alignment explanation
Indices: 14349044--14349186 Score: 238
Period size: 61 Copynumber: 2.4 Consensus size: 60
14349034 ACTTTTCTCA
*
14349044 ACTAGCCA-TCCTTTCCACCACCAACTCCACTAGCCACTC-TTTTTCCACCA-CAACTCC
1 ACTAGCCACACCTTTCCACCACCAACTCCACTAGCCACTCTTTTTTCCACCACCAACTCC
14349101 ACTAGCCACACCATTTCCACCACCAACTCCACTAGCCACTCTTTTTTCCACCACCAACTCC
1 ACTAGCCACACC-TTTCCACCACCAACTCCACTAGCCACTCTTTTTTCCACCACCAACTCC
14349162 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACACCTT-TCCACCACCA
14349187 CTTATACCTA
Statistics
Matches: 80, Mismatches: 1, Indels: 6
0.92 0.01 0.07
Matches are distributed among these distances:
57 8 0.10
58 2 0.03
59 28 0.35
60 13 0.16
61 29 0.36
ACGTcount: A:0.26, C:0.48, G:0.03, T:0.22
Consensus pattern (60 bp):
ACTAGCCACACCTTTCCACCACCAACTCCACTAGCCACTCTTTTTTCCACCACCAACTCC
Found at i:14349152 original size:31 final size:30
Alignment explanation
Indices: 14349055--14349186 Score: 194
Period size: 30 Copynumber: 4.4 Consensus size: 30
14349045 CTAGCCATCC
14349055 TTTCCACCACCAACTCCACTAGCCACTCTT
1 TTTCCACCACCAACTCCACTAGCCACTCTT
* **
14349085 TTTCCACCA-CAACTCCACTAGCCACACCA
1 TTTCCACCACCAACTCCACTAGCCACTCTT
14349114 TTTCCACCACCAACTCCACTAGCCACTCTTT
1 TTTCCACCACCAACTCCACTAGCCACTC-TT
* *
14349145 TTTCCACCACCAACTCCACTAGCCACACCT
1 TTTCCACCACCAACTCCACTAGCCACTCTT
*
14349175 TCTCCACCACCA
1 TTTCCACCACCA
14349187 CTTATACCTA
Statistics
Matches: 91, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
29 26 0.29
30 38 0.42
31 27 0.30
ACGTcount: A:0.26, C:0.48, G:0.03, T:0.23
Consensus pattern (30 bp):
TTTCCACCACCAACTCCACTAGCCACTCTT
Found at i:14352397 original size:77 final size:74
Alignment explanation
Indices: 14352304--14352586 Score: 287
Period size: 65 Copynumber: 3.9 Consensus size: 74
14352294 GTTTTATTTC
* * * *
14352304 AAAATTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA-TTT
* **
14352369 TTCGTATGTTTC
65 CT-GT-TGTTAA
* * *
14352381 AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTTAGGACGCGCTGAGGTATTTTCAA----
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
**
14352442 -----AAAA
66 TGTTGTTAA
* * *
14352446 AAAAATCAACTCATAGTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
14352511 TGTTGTCAA
66 TGTTGTTAA
* * *
14352520 AAAAATCAACTCATATTACGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATT
14352585 TC
64 TC
14352587 CATTTTTCAA
Statistics
Matches: 170, Mismatches: 25, Indels: 23
0.78 0.11 0.11
Matches are distributed among these distances:
65 55 0.32
74 40 0.24
76 21 0.12
77 54 0.32
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (74 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
TGTTGTTAA
Found at i:14352585 original size:76 final size:74
Alignment explanation
Indices: 14352444--14352586 Score: 214
Period size: 74 Copynumber: 1.9 Consensus size: 74
14352434 ATTTTCAAAA
* * **
14352444 AAAAAAATCAACTCATAGTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATAGTACGAGAGGCGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAATT
14352509 TCTGTTGTC
66 TCTGTTGTC
* *
14352518 AAAAAAATCAACTCATATTACGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATAGTACGAGAGGCGAGTTGAGCCTCAGG--ACACGCCGAGGTAATTTCAA
14352583 TTTC
64 TTTC
14352587 CATTTTTCAA
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
74 40 0.66
76 21 0.34
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (74 bp):
AAAAAAATCAACTCATAGTACGAGAGGCGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAATT
TCTGTTGTC
Found at i:14352719 original size:75 final size:76
Alignment explanation
Indices: 14352611--14352755 Score: 229
Period size: 75 Copynumber: 1.9 Consensus size: 76
14352601 TGCCTTTCAA
* *
14352611 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCAA
1 AAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTCAA
14352675 TTTCTGTTGTC
66 TTTCTGTTGTC
* * *
14352686 AAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACATGCCGAGGTATTTTCA
1 AAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CACACGCCGAGGTAATTTCA
14352751 ATTTC
65 ATTTC
14352756 CGTTTTTCAA
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
75 42 0.67
77 21 0.33
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (76 bp):
AAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTCAA
TTTCTGTTGTC
Found at i:14352724 original size:169 final size:168
Alignment explanation
Indices: 14352436--14352936 Score: 738
Period size: 169 Copynumber: 3.0 Consensus size: 168
14352426 GCTGAGGTAT
* *
14352436 TTTCAAAAAAAAAAATCAACTCATAGTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAA
1 TTTC-AAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
*
14352501 TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTACGAGAGGCGAGTTGAGCCTCAGGTCACA
65 TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACA
14352566 CGCCGAGGTATTTTCAATTTCCATTTTTCAATTTCTGCC
130 CGCCGAGGTATTTTCAATTTCCATTTTTCAATTTCTGCC
14352605 TTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
1 TTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
*
14352670 TTCAATTTCTGTTGTCAAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACA
66 TTCAATTTCTGTTGTC-AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACA
* *
14352735 TGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCC
130 CGCCGAGGTATTTTCAATTTCCATTTTTCAATTTCTGCC
* * * *
14352774 TTTC--AAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAACCT-TGGCTCACACGCTGAGCT
1 TTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGT
* * * * *
14352836 ATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATC
63 AATTTCAATTTCTGT-TGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTC
* * **
14352901 ACACACTGAGGTATTTTTTCAATTTATATTTTTCAA
127 ACACGCCGAGGTA--TTTTCAATTTCCATTTTTCAA
14352937 AAAAATCAAC
Statistics
Matches: 303, Mismatches: 22, Indels: 12
0.90 0.07 0.04
Matches are distributed among these distances:
166 2 0.01
167 38 0.13
168 75 0.25
169 167 0.55
170 3 0.01
171 18 0.06
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (168 bp):
TTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
TTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACAC
GCCGAGGTATTTTCAATTTCCATTTTTCAATTTCTGCC
Found at i:14352826 original size:92 final size:91
Alignment explanation
Indices: 14352669--14352857 Score: 247
Period size: 92 Copynumber: 2.1 Consensus size: 91
14352659 GCTGAGGTAA
* *
14352669 TTTCAATTTCTGTTGTCAAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCAC
1 TTTCAATTTCTGTTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAACCTCAGGTCAC
* * *
14352734 ATGCCGAGGTATTTTCAATTTCCGTT
66 ACGCCGAGCTATTTTCAATTTCCGTC
* * *
14352760 TTTCAATTTCTGCCTT-TCAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAACCT-TGGCT
1 TTTCAATTTCTG--TTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAACCTCAGG-T
* *
14352823 CACACGCTGAGCTATTTTCAATTTCTGTC
63 CACACGCCGAGCTATTTTCAATTTCCGTC
14352852 TTTCAA
1 TTTCAA
14352858 AAAAATCAAC
Statistics
Matches: 85, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
91 14 0.16
92 69 0.81
93 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (91 bp):
TTTCAATTTCTGTTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAACCTCAGGTCAC
ACGCCGAGCTATTTTCAATTTCCGTC
Found at i:14352887 original size:77 final size:77
Alignment explanation
Indices: 14352759--14353014 Score: 273
Period size: 77 Copynumber: 3.3 Consensus size: 77
14352749 CAATTTCCGT
* * *
14352759 TTTTCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAACCTTGGCTC
1 TTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTGGATC
*
14352824 ACACGCTGAGCTA
65 ACACGCTGAGGTA
* *
14352837 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG-AGCTTCAGATC
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTT-GGATC
*
14352901 ACACACTGAGGTA
65 ACACGCTGAGGTA
* * * * * * * * *
14352914 TTTTTTCAATTTATATTTTTCAAAAAAATCAACGCACATTGCGAGATGTGAGTTGAGCATTGGGT
1 --TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTGGAT
*
14352979 CACATG-TCGAGGTA
64 CACACGCT-GAGGTA
** *
14352993 TTTTCAAAATCTGTTTTTCAAA
1 TTTTCAATTTCTGTCTTTCAAA
14353015 TTCTGTTTTC
Statistics
Matches: 149, Mismatches: 24, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
76 4 0.03
77 65 0.44
78 19 0.13
79 59 0.40
80 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (77 bp):
TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTGGATCA
CACGCTGAGGTA
Found at i:14352969 original size:248 final size:241
Alignment explanation
Indices: 14352590--14353054 Score: 601
Period size: 248 Copynumber: 1.9 Consensus size: 241
14352580 CAATTTCCAT
*
14352590 TTTTCAATTTCTGCCTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
1 TTTTCAATTTCTGCCTTTC--AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGC
* * * **
14352655 ACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAAATCAACTCGTATTGCGAGAGGCGAGTT
64 ACACACTGAGGTAATTTCAATTTATGTTGTCAAAAAAAATCAACGCACATTGCGAGAGGCGAGTT
* ** *
14352720 GAGCCTCAGGTCACATGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAA
129 GAGCATCAGGTCACATGCCGAGGTATTTTCAAAATCCGTTTTTCAAATTCTG-CTTTC---AAAA
* *
14352785 ATCGACTCATATTGCGAGAGGTGAGTTGAACCTTGGCTCACACGCTGAGCTA
190 ATCAACTCATATTGCGAGAAGTGAGTTGAACCTTGGCTCACACGCTGAGCTA
* *
14352837 TTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATC
1 TTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--C
* * * * *
14352901 ACACACTGAGGTATTTTTTCAATTTATATTTTTC-AAAAAAATCAACGCACATTGCGAGATGTGA
64 ACACACTGAGGTA--ATTTCAATTTAT-GTTGTCAAAAAAAATCAACGCACATTGCGAGAGGCGA
** * * *
14352965 GTTGAGCATTGGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTCTGTTTTCAAAAA
126 GTTGAGCATCAGGTCACATGCCGAGGTATTTTCAAAATCCGTTTTTCAAATTCTGCTTTCAAAAA
14353030 TCAACTCATATTGCGAGAAGTGAGT
191 TCAACTCATATTGCGAGAAGTGAGT
14353055 CAACTCATAT
Statistics
Matches: 189, Mismatches: 24, Indels: 13
0.84 0.11 0.06
Matches are distributed among these distances:
244 69 0.37
246 12 0.06
247 22 0.12
248 82 0.43
249 4 0.02
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (241 bp):
TTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCAC
ACACTGAGGTAATTTCAATTTATGTTGTCAAAAAAAATCAACGCACATTGCGAGAGGCGAGTTGA
GCATCAGGTCACATGCCGAGGTATTTTCAAAATCCGTTTTTCAAATTCTGCTTTCAAAAATCAAC
TCATATTGCGAGAAGTGAGTTGAACCTTGGCTCACACGCTGAGCTA
Found at i:14352982 original size:79 final size:76
Alignment explanation
Indices: 14352759--14352982 Score: 250
Period size: 79 Copynumber: 2.9 Consensus size: 76
14352749 CAATTTCCGT
* ** * * *
14352759 TTTTCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAACCTTGGCTC
1 TTTTCAATTTATATCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTG-AGCTTGGATC
*
14352824 ACACGCTGAGCTA
64 ACACACTGAGCTA
* * *
14352837 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
1 TTTTCAATTTATATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTT-GGATCA
*
14352902 CACACTGAGGTA
65 CACACTGAGCTA
* * * * *
14352914 TTTTTTCAATTTATATTTTTCAAAAAAATCAACGCACATTGCGAGATGTGAGTTGAGCATTGGGT
1 --TTTTCAATTTATATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC-TTGGAT
14352979 CACA
63 CACA
14352983 TGTCGAGGTA
Statistics
Matches: 127, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
76 4 0.03
77 47 0.37
78 18 0.14
79 56 0.44
80 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (76 bp):
TTTTCAATTTATATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTGGATCAC
ACACTGAGCTA
Found at i:14353012 original size:14 final size:13
Alignment explanation
Indices: 14352993--14353028 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
14352983 TGTCGAGGTA
14352993 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
14353006 TTTTTCAAATTCTG
1 -TTTTCAAAATCTG
14353020 TTTTCAAAA
1 TTTTCAAAA
14353029 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.50
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:14353062 original size:24 final size:24
Alignment explanation
Indices: 14353030--14353078 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
14353020 TTTTCAAAAA
14353030 TCAACTCATATTGCGAGAAGTGAG
1 TCAACTCATATTGCGAGAAGTGAG
14353054 TCAACTCATATTGCGAGAAGTGAG
1 TCAACTCATATTGCGAGAAGTGAG
14353078 T
1 T
14353079 TGAGCCTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (24 bp):
TCAACTCATATTGCGAGAAGTGAG
Found at i:14353191 original size:30 final size:30
Alignment explanation
Indices: 14353150--14353207 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
14353140 TCATATTGCG
14353150 AGAGGTGAGTTGAG-CTTTTTAATTTCTGCT
1 AGAGGTGAGTTGAGTC-TTTTAATTTCTGCT
*
14353180 AGAGTTGAGTTGAGTCTTTTAATTTCTG
1 AGAGGTGAGTTGAGTCTTTTAATTTCTG
14353208 TTTTTCAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.21, C:0.09, G:0.26, T:0.45
Consensus pattern (30 bp):
AGAGGTGAGTTGAGTCTTTTAATTTCTGCT
Found at i:14353290 original size:277 final size:266
Alignment explanation
Indices: 14352789--14353330 Score: 658
Period size: 277 Copynumber: 2.0 Consensus size: 266
14352779 AAAAAAATCG
*
14352789 ACTCATATTGCGAGAGGTGAGTTGAACCTTGGCTCACACGCTGAGCTATTTTCAATTTCTGTCTT
1 ACTCATATTGCGAGAAGTGAGTTGAACCTTGGCTCACACGCTGAGCTATTTTCAATTTCTGTCTT
*
14352854 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTT
66 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATCTTT
* * * *
14352919 TCAATTTATATTTTTCAAAAAAATCAACGCACATTGCGAGATGTGAGTTGAGCATTGGGTCACAT
131 TCAATTTATATTTTTC-AAAAAATCAACGCACATTACGAGAGGTGAGTTGAGCATCGAGTCACAT
* * ** *
14352984 GTCGAGGTATTTTCAAAATCTGTTTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAA
195 ATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAAG-TTTCAAAAATCAACTCATATTGCAAGAA
14353049 GTGAGTCA
259 GTGAGTCA
* ** * *
14353057 ACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAATTCTATTTT
1 ACTCATATTGCGAGAAGTGAGTTGAACCTTGGCTCACACGCTGAGCTATTTTC-AATT-T-CTGT
* * * * *
14353122 TTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTCTGCTAGAGTT
63 CTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--TTCAGA--TC-AC-ACA-CT
* * * * *
14353186 GAGTTGAGTCTTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTACGAGAGGTGAGTTGAGC
120 GAGGT-A-TCTTTTCAATTTATATTTTTCAAAAAATCAACGCACATTACGAGAGGTGAGTTGAGC
* * *
14353249 CTCGAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAAGTTTCAAAAATCAACTTA
183 ATCGAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAAGTTTCAAAAATCAACTCA
*
14353314 TATTGCAAGAGGTGAGT
248 TATTGCAAGAAGTGAGT
14353331 TGAGCCTTGG
Statistics
Matches: 231, Mismatches: 30, Indels: 18
0.83 0.11 0.06
Matches are distributed among these distances:
268 49 0.21
269 4 0.02
270 1 0.00
271 13 0.06
272 30 0.13
273 1 0.00
274 3 0.01
275 2 0.01
276 32 0.14
277 73 0.32
278 5 0.02
279 13 0.06
280 5 0.02
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (266 bp):
ACTCATATTGCGAGAAGTGAGTTGAACCTTGGCTCACACGCTGAGCTATTTTCAATTTCTGTCTT
TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATCTTT
TCAATTTATATTTTTCAAAAAATCAACGCACATTACGAGAGGTGAGTTGAGCATCGAGTCACATA
TCGAGGTATTTTCAAAATCTGCTTTTCAAATTAAGTTTCAAAAATCAACTCATATTGCAAGAAGT
GAGTCA
Found at i:14354350 original size:17 final size:17
Alignment explanation
Indices: 14354328--14354366 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
14354318 CCTAAAGGTG
*
14354328 ATTTTA-TCTTCTTTATT
1 ATTTTACTCTTATTT-TT
14354345 ATTTTACTCTTATTTTT
1 ATTTTACTCTTATTTTT
14354362 ATTTT
1 ATTTT
14354367 TATTTTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.72
Consensus pattern (17 bp):
ATTTTACTCTTATTTTT
Found at i:14354454 original size:17 final size:16
Alignment explanation
Indices: 14354428--14354468 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
14354418 TAATAAAAAA
14354428 ATATAAAAAAATATAT
1 ATATAAAAAAATATAT
14354444 ATATAAAAAAA-ATAT
1 ATATAAAAAAATATAT
14354459 A-A-AAAAAAAT
1 ATATAAAAAAAT
14354469 TTACGCAGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 7 0.29
14 1 0.04
15 5 0.21
16 11 0.46
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (16 bp):
ATATAAAAAAATATAT
Found at i:14355125 original size:11 final size:11
Alignment explanation
Indices: 14355096--14355136 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
14355086 TTCTAATACG
14355096 TATATATA-T-
1 TATATATATTA
*
14355105 TATATGTATTA
1 TATATATATTA
14355116 TATATATATTA
1 TATATATATTA
*
14355127 TGTATATATT
1 TATATATATT
14355137 TTTTATGCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
9 7 0.26
10 1 0.04
11 19 0.70
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (11 bp):
TATATATATTA
Found at i:14355467 original size:16 final size:16
Alignment explanation
Indices: 14355428--14355468 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
14355418 CTAATATTTT
*
14355428 CTTTTATTA-TAGATA
1 CTTTTATTATTACATA
14355443 -TTATTATTATTACATA
1 CTT-TTATTATTACATA
14355459 CTTTTATTAT
1 CTTTTATTAT
14355469 ATGCATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
14 2 0.09
15 6 0.27
16 12 0.55
17 2 0.09
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.59
Consensus pattern (16 bp):
CTTTTATTATTACATA
Found at i:14357308 original size:36 final size:36
Alignment explanation
Indices: 14357261--14357334 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
14357251 ATTCTATAAC
*
14357261 AATGATAATTTAGTAAATTTTATATTCCATCAACCA
1 AATGATAATTTAATAAATTTTATATTCCATCAACCA
14357297 AATGATAATTTAATAAATTTTATATTCCATCAACCA
1 AATGATAATTTAATAAATTTTATATTCCATCAACCA
14357333 AA
1 AA
14357335 GATCAAAATC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.45, C:0.14, G:0.04, T:0.38
Consensus pattern (36 bp):
AATGATAATTTAATAAATTTTATATTCCATCAACCA
Found at i:14357726 original size:31 final size:31
Alignment explanation
Indices: 14357691--14357763 Score: 101
Period size: 31 Copynumber: 2.4 Consensus size: 31
14357681 AAAAATGGTT
14357691 ACTAAATTGTTTGAAAGTTTTCATTTAAGTC
1 ACTAAATTGTTTGAAAGTTTTCATTTAAGTC
** **
14357722 ACTAAATCATTTGAAAGTTTTTGTTTAAGTC
1 ACTAAATTGTTTGAAAGTTTTCATTTAAGTC
*
14357753 ACTAAGTTGTT
1 ACTAAATTGTT
14357764 AAGGTTTTTT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.32, C:0.10, G:0.14, T:0.45
Consensus pattern (31 bp):
ACTAAATTGTTTGAAAGTTTTCATTTAAGTC
Found at i:14361267 original size:6 final size:6
Alignment explanation
Indices: 14361247--14361284 Score: 60
Period size: 6 Copynumber: 6.3 Consensus size: 6
14361237 TGCTTGATTT
14361247 AAAA-A AAAAGAA AAAAGA AAAAGA AAAAGA AAAAGA AA
1 AAAAGA AAAAG-A AAAAGA AAAAGA AAAAGA AAAAGA AA
14361285 CTAATAACTA
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 4 0.13
6 21 0.68
7 6 0.19
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:14364620 original size:3 final size:3
Alignment explanation
Indices: 14364612--14364655 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
14364602 ACGTATATAT
14364612 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
14364656 GGAAATAGTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:14365502 original size:15 final size:15
Alignment explanation
Indices: 14365482--14365511 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14365472 AATGTAGAAG
14365482 AAAGAAAAAAAAACA
1 AAAGAAAAAAAAACA
*
14365497 AAAGAAAAGAAAACA
1 AAAGAAAAAAAAACA
14365512 GATTCGGTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.83, C:0.07, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAGAAAAAAAAACA
Found at i:14365975 original size:13 final size:13
Alignment explanation
Indices: 14365952--14365985 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
14365942 TATTGGGTCT
14365952 TGGGTTTAGGTTAG
1 TGGG-TTAGGTTAG
14365966 TGGGTTAGGTTAG
1 TGGGTTAGGTTAG
14365979 TGGGTTA
1 TGGGTTA
14365986 AGGGGTGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.15, C:0.00, G:0.44, T:0.41
Consensus pattern (13 bp):
TGGGTTAGGTTAG
Found at i:14366759 original size:54 final size:54
Alignment explanation
Indices: 14366603--14366751 Score: 210
Period size: 54 Copynumber: 2.8 Consensus size: 54
14366593 GTGATCTTGA
* * * * * *
14366603 GCTCAAATCATTTCTCGCAATATGAATTGACTCTTT-AAAAATAGATATTAAAAG
1 GCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTGAAAAATAAAAATTAAAAG
*
14366657 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAAAATTAAAAG
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAATAAAAATTAAAAG
*
14366711 GCTTAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAA
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAA
14366752 CATAAATTGA
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
53 4 0.05
54 81 0.95
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (54 bp):
GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAATAAAAATTAAAAG
Found at i:14366763 original size:14 final size:14
Alignment explanation
Indices: 14366744--14366776 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
14366734 GAGTTGATTT
*
14366744 TTGAAAAACATAAA
1 TTGAAAAACAGAAA
14366758 TTG-AAAACAGAAA
1 TTGAAAAACAGAAA
14366771 TTGAAA
1 TTGAAA
14366777 TTATCTCAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.61, C:0.06, G:0.12, T:0.21
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:14366856 original size:86 final size:85
Alignment explanation
Indices: 14366709--14366943 Score: 323
Period size: 86 Copynumber: 2.8 Consensus size: 85
14366699 AAAAATTAAA
* * * *
14366709 AGGCTTAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAAACAGAAATTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATT-AAAACAGAAATTG
* *
14366774 -AAATTATCTCAGCGTGCCCCG
65 AAAATT-CCTCAGCGTGCCACG
* *
14366795 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGGAAAAATAGAAATTAAAGATAGAAATTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAA-ACAGAAATTG
*
14366860 AAAATTCCTCAGCGTGCCATG
65 AAAATTCCTCAGCGTGCCACG
*
14366881 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAACAT-G-AATTAAAACAGAAATTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA-ATAGAAATTAAAACAGAAATTG
14366944 GAAGAACAGA
Statistics
Matches: 134, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
84 9 0.07
85 10 0.07
86 108 0.81
87 7 0.05
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (85 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAAACAGAAATTGA
AAATTCCTCAGCGTGCCACG
Found at i:14366985 original size:185 final size:176
Alignment explanation
Indices: 14366748--14367126 Score: 485
Period size: 185 Copynumber: 2.1 Consensus size: 176
14366738 TGATTTTTGA
* * *
14366748 AAAACATAAATTGAAAACAGAAATTGAAATTATCTCAGCGTGCCCCGAGGCTCAACTCACCTCTC
1 AAAACAGAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTC
* *
14366813 GCAATATGAGTTGATTTTGGAAAAATAGAAATTAAAGATAGAAATTGAAAATT-CCTCAGCGTG-
66 GCAATATGAGTTGATTTTGG--AAA-AG-AA-GAAACAT--AAATTG-AAATTACCTCAGCGTGT
*
14366876 CCATGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAACATGAATT
123 CC-TGAGGCTCAACTCACCTCTCACAATATGAGTTAATTTTTGAAAACATGAATT
* *
14366931 AAAACAGAAATTGGAAGAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
1 AAAACAGAAATT-GAA-AACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTC
* *
14366996 TCGCAATATGAGTTGATTTTTGAAAAGCAGAAACATAAATTGAAATTACCTCAGCGTGTCCTGAG
64 TCGCAATATGAGTTGATTTTGGAAAAGAAGAAACATAAATTGAAATTACCTCAGCGTGTCCTGAG
* * * **
14367061 GCTTAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAGTACAAATT
129 GCTCAACTCACCTCTCACAATATGAGTTAATTTTTGAAAA-CATGAATT
14367110 AAAAACAGAAATT-AAAA
1 -AAAACAGAAATTGAAAA
14367127 GGTTCAACTC
Statistics
Matches: 175, Mismatches: 15, Indels: 18
0.84 0.07 0.09
Matches are distributed among these distances:
177 7 0.04
178 59 0.34
179 7 0.04
180 17 0.10
181 1 0.01
182 2 0.01
183 14 0.08
184 3 0.02
185 65 0.37
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.26
Consensus pattern (176 bp):
AAAACAGAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTC
GCAATATGAGTTGATTTTGGAAAAGAAGAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGC
TCAACTCACCTCTCACAATATGAGTTAATTTTTGAAAACATGAATT
Found at i:14367084 original size:79 final size:79
Alignment explanation
Indices: 14366948--14367101 Score: 272
Period size: 79 Copynumber: 1.9 Consensus size: 79
14366938 AAATTGGAAG
*
14366948 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAAT
14367013 TTTTGAAAAGCAGA
66 TTTTGAAAAGCAGA
* * *
14367027 AACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTTAACTCACCTCTCGCAATATGAGTTAAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAAT
14367092 TTTTGAAAAG
66 TTTTGAAAAG
14367102 TACAAATTAA
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
79 71 1.00
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.28
Consensus pattern (79 bp):
AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAAT
TTTTGAAAAGCAGA
Found at i:14368005 original size:44 final size:45
Alignment explanation
Indices: 14367950--14368065 Score: 153
Period size: 51 Copynumber: 2.5 Consensus size: 45
14367940 GTTTCATTAG
* *
14367950 GACGCCTTTTTCGGGTTTTCAT-CCTAATCTTTTGTGTTAATCAA
1 GACGCCCTTTTCGAGTTTTCATCCCTAATCTTTTGTGTTAATCAA
14367994 GACGCCCTTTTCGAGTTTTCACCTTGATCCCTAATCTTTTGTGTTAATCAA
1 GACGCCCTTTTCGAGTTTT---C---ATCCCTAATCTTTTGTGTTAATCAA
14368045 GACGCCCTTTTCGAGTTTTCA
1 GACGCCCTTTTCGAGTTTTCA
14368066 CCTTGATCCT
Statistics
Matches: 63, Mismatches: 2, Indels: 13
0.81 0.03 0.17
Matches are distributed among these distances:
44 17 0.27
45 1 0.02
47 1 0.02
48 1 0.02
50 2 0.03
51 41 0.65
ACGTcount: A:0.18, C:0.24, G:0.16, T:0.42
Consensus pattern (45 bp):
GACGCCCTTTTCGAGTTTTCATCCCTAATCTTTTGTGTTAATCAA
Found at i:14368027 original size:51 final size:51
Alignment explanation
Indices: 14367972--14368074 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
14367962 GGGTTTTCAT
14367972 CCTAATCTTTTGTGTTAATCAAGACGCCCTTTTCGAGTTTTCACCTTGATC
1 CCTAATCTTTTGTGTTAATCAAGACGCCCTTTTCGAGTTTTCACCTTGATC
14368023 CCTAATCTTTTGTGTTAATCAAGACGCCCTTTTCGAGTTTTCACCTTGATC
1 CCTAATCTTTTGTGTTAATCAAGACGCCCTTTTCGAGTTTTCACCTTGATC
14368074 C
1 C
14368075 TTTTTTTTAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.19, C:0.26, G:0.14, T:0.41
Consensus pattern (51 bp):
CCTAATCTTTTGTGTTAATCAAGACGCCCTTTTCGAGTTTTCACCTTGATC
Found at i:14379201 original size:15 final size:14
Alignment explanation
Indices: 14379181--14379210 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
14379171 CAATGTTAAA
14379181 ATATATACATAATAT
1 ATATATACAT-ATAT
14379196 ATATATACATATAT
1 ATATATACATATAT
14379210 A
1 A
14379211 AAATAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (14 bp):
ATATATACATATAT
Found at i:14379424 original size:21 final size:21
Alignment explanation
Indices: 14379377--14379433 Score: 51
Period size: 21 Copynumber: 2.7 Consensus size: 21
14379367 CACGTATAAT
* * * *
14379377 AAAATATATGTACTAGTATTA
1 AAAATAAATGTAATAGGAATA
*
14379398 ATAATAAATGTAATAGGAATA
1 AAAATAAATGTAATAGGAATA
* *
14379419 AAAATAGATATAATA
1 AAAATAAATGTAATA
14379434 ATATATATAT
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.56, C:0.02, G:0.11, T:0.32
Consensus pattern (21 bp):
AAAATAAATGTAATAGGAATA
Found at i:14379649 original size:53 final size:53
Alignment explanation
Indices: 14379591--14379696 Score: 194
Period size: 53 Copynumber: 2.0 Consensus size: 53
14379581 TGACATACAA
* *
14379591 ATACATTAATAAAAGCAATAATATTAAAAGCTATTAATAATACTATGTAATAT
1 ATACATTAACAAAAGCAATAAAATTAAAAGCTATTAATAATACTATGTAATAT
14379644 ATACATTAACAAAAGCAATAAAATTAAAAGCTATTAATAATACTATGTAATAT
1 ATACATTAACAAAAGCAATAAAATTAAAAGCTATTAATAATACTATGTAATAT
14379697 TTATAATACA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.54, C:0.08, G:0.06, T:0.32
Consensus pattern (53 bp):
ATACATTAACAAAAGCAATAAAATTAAAAGCTATTAATAATACTATGTAATAT
Found at i:14379750 original size:3 final size:3
Alignment explanation
Indices: 14379742--14379776 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
14379732 ATACGTATAT
14379742 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
14379777 GGAAATAGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:14379794 original size:12 final size:12
Alignment explanation
Indices: 14379744--14379794 Score: 57
Period size: 12 Copynumber: 4.2 Consensus size: 12
14379734 ACGTATATAT
*
14379744 AATAATAATAAT
1 AATAATAATAAA
*
14379756 AATAATAATAAT
1 AATAATAATAAA
**
14379768 AATAATAATGGA
1 AATAATAATAAA
*
14379780 AATAGTAATAAA
1 AATAATAATAAA
14379792 AAT
1 AAT
14379795 GACATTAGGA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (12 bp):
AATAATAATAAA
Found at i:14380619 original size:15 final size:15
Alignment explanation
Indices: 14380599--14380628 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14380589 AATGTAAAAG
14380599 AAAGAAAAAAAAACA
1 AAAGAAAAAAAAACA
*
14380614 AAAGAAAAGAAAACA
1 AAAGAAAAAAAAACA
14380629 GATTCGGTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.83, C:0.07, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAGAAAAAAAAACA
Found at i:14381095 original size:13 final size:13
Alignment explanation
Indices: 14381072--14381105 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
14381062 TATTGGGTCT
14381072 TGGGTTTAGGTTAG
1 TGGG-TTAGGTTAG
14381086 TGGGTTAGGTTAG
1 TGGGTTAGGTTAG
14381099 TGGGTTA
1 TGGGTTA
14381106 AGGGGTGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.15, C:0.00, G:0.44, T:0.41
Consensus pattern (13 bp):
TGGGTTAGGTTAG
Found at i:14383875 original size:25 final size:25
Alignment explanation
Indices: 14383847--14383942 Score: 61
Period size: 25 Copynumber: 3.7 Consensus size: 25
14383837 TATATCTTCC
14383847 TATTTAAATGATTTTATACATTATT
1 TATTTAAATGATTTTATACATTATT
** * *
14383872 TATTCCAA-GTTTCTTTTACATATTATT
1 TATTTAAATGATT-TTATAC--ATTATT
**
14383899 TATTCTAAAT-ATTTTATATGTTATT
1 TATT-TAAATGATTTTATACATTATT
**
14383924 TATTTTAAACCATTTTATA
1 TA-TTTAAATGATTTTATA
14383943 TATGCATATT
Statistics
Matches: 53, Mismatches: 11, Indels: 13
0.69 0.14 0.17
Matches are distributed among these distances:
24 3 0.06
25 22 0.42
26 10 0.19
27 14 0.26
28 4 0.08
ACGTcount: A:0.32, C:0.08, G:0.03, T:0.56
Consensus pattern (25 bp):
TATTTAAATGATTTTATACATTATT
Found at i:14384899 original size:18 final size:18
Alignment explanation
Indices: 14384876--14384910 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14384866 CCAAACACAC
14384876 CGTTTTAATAAACTAAAA
1 CGTTTTAATAAACTAAAA
* *
14384894 CGTTTTATTAAAGTAAA
1 CGTTTTAATAAACTAAA
14384911 GGTTATCCGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.37
Consensus pattern (18 bp):
CGTTTTAATAAACTAAAA
Found at i:14385489 original size:21 final size:21
Alignment explanation
Indices: 14385470--14385511 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
14385460 ATATATAAAT
*
14385470 AAAAAATTTAAAAAGATAAAAC
1 AAAAATTTTAAAAA-ATAAAAC
14385492 AAAAATTTTAAAAAATAAAA
1 AAAAATTTTAAAAAATAAAA
14385512 ATATGTGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (21 bp):
AAAAATTTTAAAAAATAAAAC
Found at i:14387309 original size:11 final size:11
Alignment explanation
Indices: 14387293--14387318 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
14387283 TTATCGAATA
14387293 TTTGGCAAGAT
1 TTTGGCAAGAT
14387304 TTTGGCAAGAT
1 TTTGGCAAGAT
14387315 TTTG
1 TTTG
14387319 TAAAATTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.23, C:0.08, G:0.27, T:0.42
Consensus pattern (11 bp):
TTTGGCAAGAT
Found at i:14387713 original size:28 final size:28
Alignment explanation
Indices: 14387681--14387743 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
14387671 ATAGGGAAGT
*
14387681 AAATGGTAAACTGCAAATACTGACTTTG
1 AAATGGTAAACTACAAATACTGACTTTG
*
14387709 AAATGGTAAACTATAAATACTGACTTTG
1 AAATGGTAAACTACAAATACTGACTTTG
14387737 AAATGGT
1 AAATGGT
14387744 GATGTTATAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.41, C:0.11, G:0.17, T:0.30
Consensus pattern (28 bp):
AAATGGTAAACTACAAATACTGACTTTG
Found at i:14394279 original size:28 final size:28
Alignment explanation
Indices: 14394200--14394266 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
14394190 ATATTGAATT
* * *
14394200 GGGCTTAGGCCCACACTGTTACTATATA
1 GGGCTAAGGCCCAAACTGTTACTGTATA
14394228 GGGCTAAGGCCCAAACTGTTACTGTATA
1 GGGCTAAGGCCCAAACTGTTACTGTATA
14394256 GGGCTAAGGCC
1 GGGCTAAGGCC
14394267 GAGATTGTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (28 bp):
GGGCTAAGGCCCAAACTGTTACTGTATA
Found at i:14402217 original size:28 final size:27
Alignment explanation
Indices: 14402185--14402251 Score: 75
Period size: 28 Copynumber: 2.5 Consensus size: 27
14402175 TTGGAGGAAG
14402185 TACTG-TATTAGTGGCTTTGCCACGTAGT
1 TACTGCTATTAGTGGCTTTGCCAC--AGT
* *
14402213 TACTGCT-TTGGTGGCTTTGCCACATT
1 TACTGCTATTAGTGGCTTTGCCACAGT
*
14402239 TACTGTTATTAGT
1 TACTGCTATTAGT
14402252 AGCATTGTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
26 8 0.24
27 4 0.12
28 20 0.61
29 1 0.03
ACGTcount: A:0.16, C:0.18, G:0.22, T:0.43
Consensus pattern (27 bp):
TACTGCTATTAGTGGCTTTGCCACAGT
Found at i:14402438 original size:28 final size:28
Alignment explanation
Indices: 14402391--14402490 Score: 92
Period size: 28 Copynumber: 3.4 Consensus size: 28
14402381 GACTGCAATG
* * * *
14402391 TACTGATACTGAATTGGGCTTAGGCCCA
1 TACTGTTACTGTATAGGGCTAAGGCCCA
*
14402419 TACTGTTACTGTATATGGCTAAGGCCCAGA
1 TACTGTTACTGTATAGGGCTAAGGCCC--A
*
14402449 CTGCACTGATACTGTATAGGGCTAAGGCCCA
1 -T--ACTGTTACTGTATAGGGCTAAGGCCCA
*
14402480 GACTGTTACTG
1 TACTGTTACTG
14402491 CATTCTGTTT
Statistics
Matches: 58, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
28 31 0.53
30 1 0.02
31 2 0.03
33 24 0.41
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (28 bp):
TACTGTTACTGTATAGGGCTAAGGCCCA
Found at i:14402462 original size:33 final size:33
Alignment explanation
Indices: 14402420--14402484 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
14402410 TTAGGCCCAT
* *
14402420 ACTGTTACTGTATATGGCTAAGGCCCAGACTGC
1 ACTGATACTGTATAGGGCTAAGGCCCAGACTGC
14402453 ACTGATACTGTATAGGGCTAAGGCCCAGACTG
1 ACTGATACTGTATAGGGCTAAGGCCCAGACTG
14402485 TTACTGCATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (33 bp):
ACTGATACTGTATAGGGCTAAGGCCCAGACTGC
Found at i:14405130 original size:31 final size:32
Alignment explanation
Indices: 14405089--14405156 Score: 86
Period size: 31 Copynumber: 2.1 Consensus size: 32
14405079 TATACACGCA
14405089 TAAAACTTTAATTGTAG-TTTAA-ATATATATT
1 TAAAACTTTAATT-TAGATTTAATATATATATT
* *
14405120 TAAAATTTTAATTTCGATTTAATTATATATATT
1 TAAAACTTTAATTTAGATTTAA-TATATATATT
14405153 TAAA
1 TAAA
14405157 GAAATAAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 2 0.06
31 17 0.53
33 13 0.41
ACGTcount: A:0.43, C:0.03, G:0.04, T:0.50
Consensus pattern (32 bp):
TAAAACTTTAATTTAGATTTAATATATATATT
Found at i:14405202 original size:25 final size:28
Alignment explanation
Indices: 14405160--14405227 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 28
14405150 ATTTAAAGAA
** *
14405160 ATAAATAAATCGATTTATTT-T-TATAT
1 ATAAATAAATATAATTATTTGTGTATAT
14405186 -TAAATAAATATAATTATTTGTGTATAT
1 ATAAATAAATATAATTATTTGTGTATAT
*
14405213 AATATATAAATATAA
1 -ATAAATAAATATAA
14405228 AATAATATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
25 16 0.47
26 1 0.03
27 5 0.15
29 12 0.35
ACGTcount: A:0.49, C:0.01, G:0.04, T:0.46
Consensus pattern (28 bp):
ATAAATAAATATAATTATTTGTGTATAT
Found at i:14405204 original size:29 final size:30
Alignment explanation
Indices: 14405158--14405227 Score: 72
Period size: 29 Copynumber: 2.4 Consensus size: 30
14405148 ATATTTAAAG
* * *
14405158 AAATAAATA-AATCGATTTATTTTTATATT
1 AAATAAATATAATCGATTTATGTATATAAT
* *
14405187 AAATAAATATAAT-TATTTGTGTATATAAT
1 AAATAAATATAATCGATTTATGTATATAAT
*
14405216 ATATAAATATAA
1 AAATAAATATAA
14405228 AATAATATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 31 0.91
30 3 0.09
ACGTcount: A:0.50, C:0.01, G:0.04, T:0.44
Consensus pattern (30 bp):
AAATAAATATAATCGATTTATGTATATAAT
Found at i:14408246 original size:21 final size:21
Alignment explanation
Indices: 14408220--14408259 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
14408210 AAAGATATGA
14408220 TGAAAAT-AATAATAATAATGG
1 TGAAAATAAATAAT-ATAATGG
14408241 TGAAAATAAATAATATAAT
1 TGAAAATAAATAATATAAT
14408260 AATAAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.30
Consensus pattern (21 bp):
TGAAAATAAATAATATAATGG
Found at i:14408271 original size:33 final size:34
Alignment explanation
Indices: 14408224--14408289 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 34
14408214 ATATGATGAA
* * *
14408224 AATAATAATAATAATGGTGAAAATAA-ATAATAT
1 AATAATAATAATAATAGTAAAAAAAAGATAATAT
14408257 AATAATAA-ATATAATAGTAAAAAAAAGATAATA
1 AATAATAATA-ATAATAGTAAAAAAAAGATAATA
14408290 CTATATGAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
32 1 0.04
33 21 0.75
34 6 0.21
ACGTcount: A:0.65, C:0.00, G:0.08, T:0.27
Consensus pattern (34 bp):
AATAATAATAATAATAGTAAAAAAAAGATAATAT
Found at i:14413000 original size:18 final size:18
Alignment explanation
Indices: 14412949--14413000 Score: 54
Period size: 20 Copynumber: 2.8 Consensus size: 18
14412939 TCAAAATTTT
14412949 AAAATAATAT-TTTGAAA
1 AAAATAATATATTTGAAA
14412966 AAAATAATTATGAATTT-AAA
1 AAAATAA-TAT--ATTTGAAA
14412986 AAATATAATATATTT
1 AAA-ATAATATATTT
14413001 TTATAAATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
17 7 0.23
18 7 0.23
20 9 0.30
21 7 0.23
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (18 bp):
AAAATAATATATTTGAAA
Done.