Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 45 of 290
Found at i:14704525 original size:17 final size:15
Alignment explanation
Indices: 14704496--14704544 Score: 55
Period size: 15 Copynumber: 3.2 Consensus size: 15
14704486 TTGACTTCAA
14704496 ATTTTTTTATTTATT
1 ATTTTTTTATTTATT
14704511 ATTTATTTTATTTTATT
1 ATTT-TTTTA-TTTATT
* *
14704528 A-ATGTTTATTTATT
1 ATTTTTTTATTTATT
14704542 ATT
1 ATT
14704545 GTCCCATATT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
14 7 0.25
15 8 0.29
16 6 0.21
17 7 0.25
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (15 bp):
ATTTTTTTATTTATT
Found at i:14704642 original size:13 final size:14
Alignment explanation
Indices: 14704624--14704678 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 14
14704614 TTTTATTTCG
14704624 TTTATTTTATACT-
1 TTTATTTTATACTA
14704637 TTTATTTTATA-TA
1 TTTATTTTATACTA
*
14704650 TATTATTTATTTACTTA
1 T-TTATTT-TATAC-TA
14704667 TTTATTTTATAC
1 TTTATTTTATAC
14704679 ATATATACAT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
12 1 0.03
13 12 0.34
14 6 0.17
15 7 0.20
16 6 0.17
17 3 0.09
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTATTTTATACTA
Found at i:14704784 original size:3 final size:3
Alignment explanation
Indices: 14704776--14704815 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
14704766 TCCATTTTAC
* *
14704776 TTA TTA TTA TTA TTA -TA TTA TTA GTA TTA GTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
14704816 CTTTTTTGCT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:14704872 original size:3 final size:3
Alignment explanation
Indices: 14704866--14704927 Score: 63
Period size: 3 Copynumber: 21.0 Consensus size: 3
14704856 TGATGATCAA
* * * * * *
14704866 TAT TAT TAT TAT TAT CAT TAT TAT CAT TAT TAC TAT T-G TAT TAC TAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14704913 TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT
14704928 ATTGTTTTTA
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
2 1 0.02
3 47 0.98
ACGTcount: A:0.32, C:0.08, G:0.02, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:14705755 original size:128 final size:126
Alignment explanation
Indices: 14705519--14705755 Score: 325
Period size: 128 Copynumber: 1.9 Consensus size: 126
14705509 CGTTTTTTTT
* *
14705519 TTGGAAATTCGAGAAAACGTGTCCTAACTTACTGGGTTTCAATTTTTCTCGTTTAACCTAAATAA
1 TTGGAAAGTCGAGAAAACGTGCCCTAACTTACTGGGTTTCAATTTTTCTCGTTTAACCTAAATAA
* * *
14705584 CCTAATATCCCTTCAAATTTCAAAAATATGAATTTTAAATAAAATAAGGCAATATTCCGTTC
66 CCGAATATCCCTTAAAATTT-AAAAATACGAATTTTAAATAAAATAAGGCAATATTCCGTTC
* *
14705646 TTGGAAAGTCGAGAAAATCGTGCCCTAACTTACTGGGTTTCGATTTTTCTCGTTTAATCTAAATA
1 TTGGAAAGTCGAGAAAA-CGTGCCCTAACTTACTGGGTTTCAATTTTTCTCGTTTAACCTAAATA
* * *
14705711 ACCGAATATCCTTTTAAAAATTT-TAAATACG-TTTTTAAATTAAAA
65 ACCGAATATCC-CTT-AAAATTTAAAAATACGAATTTTAAA-TAAAA
14705756 GGCAGGCTTA
Statistics
Matches: 96, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
127 23 0.24
128 65 0.68
129 2 0.02
130 6 0.06
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (126 bp):
TTGGAAAGTCGAGAAAACGTGCCCTAACTTACTGGGTTTCAATTTTTCTCGTTTAACCTAAATAA
CCGAATATCCCTTAAAATTTAAAAATACGAATTTTAAATAAAATAAGGCAATATTCCGTTC
Found at i:14706213 original size:68 final size:68
Alignment explanation
Indices: 14706104--14706245 Score: 275
Period size: 68 Copynumber: 2.1 Consensus size: 68
14706094 TGTGATATTT
14706104 TATTTCTCCGGAACAAGAGAATCTTAATATCCACTTCGAGTTATCAAAATATTCATAAAAGGGGA
1 TATTTCTCCGGAACAAGAGAATCTTAATATCCACTTCGAGTTATCAAAATATTCATAAAAGGGGA
14706169 TCG
66 TCG
*
14706172 TATTTCTCCGGAACAAGAGAATCTTAATATCCACTTCGAGTTATCCAAATATTCATAAAAGGGGA
1 TATTTCTCCGGAACAAGAGAATCTTAATATCCACTTCGAGTTATCAAAATATTCATAAAAGGGGA
14706237 TCG
66 TCG
14706240 TATTTC
1 TATTTC
14706246 AAAATTTATT
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 73 1.00
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.31
Consensus pattern (68 bp):
TATTTCTCCGGAACAAGAGAATCTTAATATCCACTTCGAGTTATCAAAATATTCATAAAAGGGGA
TCG
Found at i:14707635 original size:3 final size:3
Alignment explanation
Indices: 14707629--14707789 Score: 68
Period size: 3 Copynumber: 53.7 Consensus size: 3
14707619 TTTTTTTACA
* *
14707629 TAT TAT TAA TAT TAT TAC TAT TAT T-T TAT T-T CTAT TAT TAT CT-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT -TAT
* * * * * *
14707673 TAT TAT TAC TGT TAG TAT TAT T-T TCAT TAC TAT TAT TTT TAT TAA
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
* * * * *
14707718 CA- TAT TAAT TAT T-T TCT AACG TAT TAT TAT TACT AAT TAT TAT T-T
1 TAT TAT T-AT TAT TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TAT
*
14707763 CTAGT T-T TAT TAT TAT TAT TAA TAT TA
1 -TA-T TAT TAT TAT TAT TAT TAT TAT TA
14707790 GTGTATGTAT
Statistics
Matches: 116, Mismatches: 26, Indels: 32
0.67 0.15 0.18
Matches are distributed among these distances:
2 12 0.10
3 92 0.79
4 11 0.09
5 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:14707658 original size:23 final size:23
Alignment explanation
Indices: 14707631--14707676 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
14707621 TTTTTACATA
14707631 TTATTAATATTATTA-CTATTATT
1 TTATTAATATTATTATCT-TTATT
**
14707654 TTATTTCTATTATTATCTTTATT
1 TTATTAATATTATTATCTTTATT
14707677 ATTACTGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 18 0.90
24 2 0.10
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (23 bp):
TTATTAATATTATTATCTTTATT
Found at i:14708030 original size:16 final size:15
Alignment explanation
Indices: 14707991--14708054 Score: 67
Period size: 16 Copynumber: 4.1 Consensus size: 15
14707981 TATATTCTTC
*
14707991 ATATATGTT-ATATAT
1 ATATATTTTAATAT-T
*
14708006 ATATGTTTTCAATATT
1 ATATATTTT-AATATT
*
14708022 ATATTTTTTATATATT
1 ATATATTTTA-ATATT
14708038 ATATATTTTAATATT
1 ATATATTTTAATATT
14708053 AT
1 AT
14708055 TAGTTATATA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
15 15 0.36
16 23 0.55
17 4 0.10
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (15 bp):
ATATATTTTAATATT
Found at i:14708061 original size:22 final size:22
Alignment explanation
Indices: 14708034--14708138 Score: 79
Period size: 21 Copynumber: 4.7 Consensus size: 22
14708024 ATTTTTTATA
*
14708034 TATTATATATTT-TAATATTAT
1 TATTATATATTTATAATACTAT
* * *
14708055 TAGTTATATATTTTTGTATACAAT
1 TA-TTATATATTTAT-AATACTAT
* *
14708079 TATATGTATATTTATAATATTA-
1 TAT-TATATATTTATAATACTAT
* *
14708101 TATTGTATATTTCTAATACTAT
1 TATTATATATTTATAATACTAT
*
14708123 TATTTATATATGTATA
1 TA-TTATATATTTATA
14708139 TATATGTGTG
Statistics
Matches: 65, Mismatches: 13, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
21 18 0.28
22 15 0.23
23 16 0.25
24 16 0.25
ACGTcount: A:0.36, C:0.03, G:0.05, T:0.56
Consensus pattern (22 bp):
TATTATATATTTATAATACTAT
Found at i:14708065 original size:31 final size:30
Alignment explanation
Indices: 14707974--14708065 Score: 84
Period size: 31 Copynumber: 3.1 Consensus size: 30
14707964 GTTTAAATAT
*
14707974 TATATTATATATTCTTCATA-TAT-GTTATA
1 TATATTATATATT-TTAATATTATAGTTATA
* * * *
14708003 TATA-TATGT-TTTCAATATTATATTTTTTA
1 TATATTATATATTTTAATATTATA-GTTATA
14708032 TATATTATATATTTTAATATTATTAGTTATA
1 TATATTATATATTTTAATATTA-TAGTTATA
14708063 TAT
1 TAT
14708066 TTTTGTATAC
Statistics
Matches: 48, Mismatches: 9, Indels: 10
0.72 0.13 0.15
Matches are distributed among these distances:
26 4 0.08
27 5 0.10
28 4 0.08
29 12 0.25
30 4 0.08
31 17 0.35
32 2 0.04
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (30 bp):
TATATTATATATTTTAATATTATAGTTATA
Found at i:14708066 original size:29 final size:28
Alignment explanation
Indices: 14707974--14708066 Score: 84
Period size: 29 Copynumber: 3.2 Consensus size: 28
14707964 GTTTAAATAT
*
14707974 TATATTATATATTCTTCATA-TA-TGTTA
1 TATATTATATATT-TTAATATTATTGTTA
* *
14708001 TATA-TATATGTTTTCAATATTATATTTTTTA
1 TATATTATATATTTT-AATA-T-TA-TTGTTA
14708032 TATATTATATATTTTAATATTATTAGTTA
1 TATATTATATATTTTAATATTATT-GTTA
14708061 TATATT
1 TATATT
14708067 TTTGTATACA
Statistics
Matches: 53, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
25 2 0.04
26 10 0.19
27 4 0.08
28 2 0.04
29 13 0.25
30 1 0.02
31 12 0.23
32 9 0.17
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.59
Consensus pattern (28 bp):
TATATTATATATTTTAATATTATTGTTA
Found at i:14708133 original size:44 final size:47
Alignment explanation
Indices: 14708036--14708143 Score: 116
Period size: 44 Copynumber: 2.4 Consensus size: 47
14708026 TTTTTATATA
* *
14708036 TTATATATTT-TAATATTATTAGTTATATATTTTTGTATACAATTAT
1 TTATATATTTATAATATTATTAGTTATATATTTCTGAATACAATTAT
* * * *
14708082 ATGTATATTTATAATATTA-TA-TTGTATATTTCT-AATACTATTAT
1 TTATATATTTATAATATTATTAGTTATATATTTCTGAATACAATTAT
*
14708126 TTATATATGTATATATAT
1 TTATATATTTATA-ATAT
14708144 GTGTGTGTAT
Statistics
Matches: 51, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
44 19 0.37
45 14 0.27
46 10 0.20
47 8 0.16
ACGTcount: A:0.36, C:0.03, G:0.05, T:0.56
Consensus pattern (47 bp):
TTATATATTTATAATATTATTAGTTATATATTTCTGAATACAATTAT
Found at i:14708154 original size:16 final size:17
Alignment explanation
Indices: 14708133--14708169 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
14708123 TATTTATATA
14708133 TGTATATATATGTGT-G
1 TGTATATATATGTGTAG
*
14708149 TGTATATATTTGTGTAG
1 TGTATATATATGTGTAG
14708166 TGTA
1 TGTA
14708170 CAAAGTAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51
Consensus pattern (17 bp):
TGTATATATATGTGTAG
Found at i:14708344 original size:72 final size:74
Alignment explanation
Indices: 14708217--14708359 Score: 186
Period size: 72 Copynumber: 2.0 Consensus size: 74
14708207 ATGTATATAT
** * *
14708217 TGTACATGTTTTATGTATGTTATGTATATATTTTTAATATTACTAATTATATATATTTC-TTA-T
1 TGTACATGTTTTATCCATCTTATGTATATATTTTTAATATTACTAATTATATATATATCATTATT
14708280 ACATTTCCA
66 ACATTTCCA
* *
14708289 TGTACATGTTTTATACCATCTTATGTATATATTTTTAA-A-TACTATATTGTGTATATATCATTA
1 TGTACATGTTTTAT-CCATCTTATGTATATATTTTTAATATTACTA-ATTATATATATATCATTA
14708352 TTACATTT
64 TTACATTT
14708360 ATTTTATTCC
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
71 5 0.08
72 26 0.43
73 23 0.38
74 7 0.11
ACGTcount: A:0.31, C:0.09, G:0.07, T:0.53
Consensus pattern (74 bp):
TGTACATGTTTTATCCATCTTATGTATATATTTTTAATATTACTAATTATATATATATCATTATT
ACATTTCCA
Found at i:14710096 original size:18 final size:19
Alignment explanation
Indices: 14710060--14710102 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
14710050 CATCTGTTTA
*
14710060 TTTAA-ATTTGAATATATT
1 TTTAATATTTGAATAAATT
14710078 TTTAATATTTGAA-AAATT
1 TTTAATATTTGAATAAATT
*
14710096 TTAAATA
1 TTTAATA
14710103 AAAATATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 15 0.68
19 7 0.32
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (19 bp):
TTTAATATTTGAATAAATT
Found at i:14714426 original size:19 final size:19
Alignment explanation
Indices: 14714404--14714441 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
14714394 TCATACCATG
14714404 CATTTACATTGCATTGCAT
1 CATTTACATTGCATTGCAT
*
14714423 CATTTGCATTGCATTGCAT
1 CATTTACATTGCATTGCAT
14714442 TGTATCATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.24, C:0.21, G:0.13, T:0.42
Consensus pattern (19 bp):
CATTTACATTGCATTGCAT
Found at i:14714437 original size:24 final size:24
Alignment explanation
Indices: 14714410--14714456 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
14714400 CATGCATTTA
14714410 CATTGCATTGCATCATTTGCATTG
1 CATTGCATTGCATCATTTGCATTG
*
14714434 CATTGCATTGTATCATTTGCATT
1 CATTGCATTGCATCATTTGCATT
14714457 AAATTTCCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.21, C:0.19, G:0.15, T:0.45
Consensus pattern (24 bp):
CATTGCATTGCATCATTTGCATTG
Found at i:14716389 original size:7 final size:7
Alignment explanation
Indices: 14716377--14716402 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
14716367 TTAATAGTCG
14716377 TCAAATT
1 TCAAATT
14716384 TCAAATT
1 TCAAATT
14716391 TCAAATT
1 TCAAATT
14716398 TCAAA
1 TCAAA
14716403 AAAAAAGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (7 bp):
TCAAATT
Found at i:14718508 original size:132 final size:130
Alignment explanation
Indices: 14718271--14719312 Score: 1063
Period size: 132 Copynumber: 7.9 Consensus size: 130
14718261 CCTATGAGGC
* *
14718271 TAAAATTTTAGATCTTGTTTCCCTGAAA-TTGAAGTGAAGCAGATCGAAGACGGCGAATCTGAGC
1 TAAAATTATAGATCTTGTTTCCCT-AAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTGAGC
* *
14718335 TTCCTGAAGTTGCAGTGAAACAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTA
65 TTCCTGAAGTTGCAGTGAAGCAGATTTAAG-CA-CATCCTAGCTCCCTAAAGTTGTAGTGGAGTA
14718400 GGT
128 GGT
14718403 TAAAATT-TCAGATCTTGTTTCCCTAAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTGAGC
1 TAAAATTAT-AGATCTTGTTTCCCTAAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTGAGC
** *
14718467 TTTTTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTA
65 TTCCTGAAGTTGCAGTGAAGCAGATTTAAG-CA-CATCCTAGCTCCCTAAAGTTGTAGTGGAGTA
*
14718532 GGC
128 GGT
* *
14718535 TAAAATT-TCAGATCTCGTTTCCCTAAAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTGAGC
1 TAAAATTAT-AGATCTTGTTTCCCTAAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTGAGC
*
14718599 TTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTA
65 TTCCTGAAGTTGCAGTGAAGCAGATTTAAG-CA-CATCCTAGCTCCCTAAAGTTGTAGTGGAGTA
*
14718664 GGC
128 GGT
** * * * * * *
14718667 TAAAATTCCAGATATTGTTTTCTTGAAGCTGCAGTGAAACAGATCGAAGACGGCGAATCTGAGCT
1 TAAAATTATAGATCTTGTTTCCCTAAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTGAGCT
* *
14718732 TCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTTCCTAAGGTTGTAGTGGAGTAG
66 TCCTGAAGTTGCAGTGAAGCAGATTTAAG-CA-CATCCTAGCTCCCTAAAGTTGTAGTGGAGTAG
14718797 GCT
129 G-T
* * * **
14718800 GAAGATTATAGATCTTGTTTCCCT-GAGATTGCAGTGGGGCAGATCGAAGACGGCGAATCT-AGG
1 TAAAATTATAGATCTTGTTTCCCTAAAG-TTGCAGTGAAGCAGATCGAAGACGGCGAATCTGA-G
* *
14718863 CTTCCTGATGTTGCAGTGAAGCAGATTTAAGCA-AGTCCTAGCTCTCTAAAGTTGTAGTGGAGTA
64 CTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCACA-TCCTAGCTCCCTAAAGTTGTAGTGGAGTA
*
14718927 GGC
128 GGT
* * * * * * * * ***
14718930 TAAGGATTGTAGATCTCGTCTCCCTGAAA-TTGCAGTGAGGTAAATCAAAGACGATAAATCTTG-
1 TAA-AATTATAGATCTTGTTTCCCT-AAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATC-TGA
* * * *
14718993 GCTTCCTGAAGATGCAGCGAAGCAGATTTAAG--CATCCTAGCTCCCTGAGGTTGTAGTGGAGTA
63 GCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCACATCCTAGCTCCCTAAAGTTGTAGTGGAGTA
*
14719056 GACT
128 G-GT
* * * * * * **
14719060 GAAGATTATAGATCTTGTTTCTCT-TAGATTGCAGATG-GGCAGATCGAAAACGGAAAATCT-AG
1 TAAAATTATAGATCTTGTTTCCCTAAAG-TTGCAG-TGAAGCAGATCGAAGACGGCGAATCTGA-
* * * * *
14719122 GCTTCTTGATGTTACAGTAAAGCAGATTTAAGCA-AGTCCTAGCTCTCTAAAGTTGTAGTGGAGT
63 GCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCACA-TCCTAGCTCCCTAAAGTTGTAGTGGAGT
14719186 AGGCT
127 AGG-T
* ** * * * * * * * * ***
14719191 GAGGATTGTAGATCTCGTCTCCTTGAAGTTGCAGTGAGGCAAATCAAAGACGATAAATCTTG-GC
1 TAAAATTATAGATCTTGTTTCCCTAAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATC-TGAGC
* *
14719255 TTCCTGAAGATGCAGCGAAGCAGATTTAAGCA-AGTCCTAGCTCCCTAAAGTTGTAGTG
65 TTCCTGAAGTTGCAGTGAAGCAGATTTAAGCACA-TCCTAGCTCCCTAAAGTTGTAGTG
14719313 AAGTGGGCTG
Statistics
Matches: 783, Mismatches: 100, Indels: 55
0.83 0.11 0.06
Matches are distributed among these distances:
127 1 0.00
128 1 0.00
129 92 0.12
130 11 0.01
131 225 0.29
132 376 0.48
133 77 0.10
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (130 bp):
TAAAATTATAGATCTTGTTTCCCTAAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTGAGCT
TCCTGAAGTTGCAGTGAAGCAGATTTAAGCACATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGT
Found at i:14718741 original size:264 final size:261
Alignment explanation
Indices: 14718267--14719324 Score: 1174
Period size: 264 Copynumber: 4.0 Consensus size: 261
14718257 TGGGCCTATG
* *
14718267 AGGCT-AAAATTTTAGATCTTGTTTCCCTGAA-ATTGAAGTGAAGCAGATCGAAGACGGCGAATC
1 AGGCTGAAAATTATAGATCTTGTTTCCCT-AAGATTGCAGTGAAGCAGATCGAAGACGGCGAATC
*
14718330 T-GAGCTTCCTGAAGTTGCAGTGAAACAGATTTAAGCCACCA-ACCTAGCTCCCTAAAGTTGTAG
65 TAG-GCTTCCTGAAGTTGCAGTGAAGCAGATTTAAG-CA--AGACCTAGCTCCCTAAAGTTGTAG
* * * * * * * * *
14718393 TGGAGTAGGTTAAAATTTCAGATCTTGTTTCCCTAAAGTTGCAGTGAAGCAGATCGAAGACGGCG
126 TGGAGTAGGCTAAAATTGCAGATCTCGTCTCCCTGAAGTTGCAGTGAAGCAAATCAAAGACGACA
** * * *
14718458 AATC-TGAGCTTTTTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTG
191 AATCTTG-GCTTCCTGAAGATGCAGCGAAGCAGATTTAAG-CA-CATCCTAGCTCCCTAAAGTTG
14718522 TAGTGGAGT
253 TAGTGGAGT
* *
14718531 AGGCT-AAAATT-TCAGATCTCGTTTCCCTAA-AGTTGCAGTGAAGCAGATCGAAGACGGTGAAT
1 AGGCTGAAAATTAT-AGATCTTGTTTCCCTAAGA-TTGCAGTGAAGCAGATCGAAGACGGCGAAT
14718593 CT-GAGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCA-ACCTAGCTCCCTAAAGTTGTA
64 CTAG-GCTTCCTGAAGTTGCAGTGAAGCAGATTTAAG-CA--AGACCTAGCTCCCTAAAGTTGTA
* * * * * * * * * * *
14718656 GTGGAGTAGGCTAAAATTCCAGATATTGTTTTCTTGAAGCTGCAGTGAAACAGATCGAAGACGGC
125 GTGGAGTAGGCTAAAATTGCAGATCTCGTCTCCCTGAAGTTGCAGTGAAGCAAATCAAAGACGAC
* * * * *
14718721 GAATC-TGAGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTTCCTAAGGTT
190 AAATCTTG-GCTTCCTGAAGATGCAGCGAAGCAGATTTAAG-CA-CATCCTAGCTCCCTAAAGTT
14718785 GTAGTGGAGT
252 GTAGTGGAGT
* * **
14718795 AGGCTGAAGATTATAGATCTTGTTTCCCTGAGATTGCAGTGGGGCAGATCGAAGACGGCGAATCT
1 AGGCTGAAAATTATAGATCTTGTTTCCCTAAGATTGCAGTGAAGCAGATCGAAGACGGCGAATCT
* * *
14718860 AGGCTTCCTGATGTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCTCTAAAGTTGTAGTGGAG
66 AGGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCAAGACCTAGCTCCCTAAAGTTGTAGTGGAG
* * * * * *
14718925 TAGGCTAAGGATTGTAGATCTCGTCTCCCTGAAATTGCAGTGAGGTAAATCAAAGACGATAAATC
131 TAGGCTAA-AATTGCAGATCTCGTCTCCCTGAAGTTGCAGTGAAGCAAATCAAAGACGACAAATC
* *
14718990 TTGGCTTCCTGAAGATGCAGCGAAGCAGATTTAAG--CATCCTAGCTCCCTGAGGTTGTAGTGGA
195 TTGGCTTCCTGAAGATGCAGCGAAGCAGATTTAAGCACATCCTAGCTCCCTAAAGTTGTAGTGGA
14719053 GT
260 GT
* * * * * * **
14719055 AGACTGAAGATTATAGATCTTGTTTCTCTTAGATTGCAGATG-GGCAGATCGAAAACGGAAAATC
1 AGGCTGAAAATTATAGATCTTGTTTCCCTAAGATTGCAG-TGAAGCAGATCGAAGACGGCGAATC
* * * * * *
14719119 TAGGCTTCTTGATGTTACAGTAAAGCAGATTTAAGCAAGTCCTAGCTCTCTAAAGTTGTAGTGGA
65 TAGGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCAAGACCTAGCTCCCTAAAGTTGTAGTGGA
** * * * *
14719184 GTAGGCTGAGGATTGTAGATCTCGTCTCCTTGAAGTTGCAGTGAGGCAAATCAAAGACGATAAAT
130 GTAGGCT-AAAATTGCAGATCTCGTCTCCCTGAAGTTGCAGTGAAGCAAATCAAAGACGACAAAT
14719249 CTTGGCTTCCTGAAGATGCAGCGAAGCAGATTTAAGCA-AGTCCTAGCTCCCTAAAGTTGTAGTG
194 CTTGGCTTCCTGAAGATGCAGCGAAGCAGATTTAAGCACA-TCCTAGCTCCCTAAAGTTGTAGTG
*
14719313 AAGT
258 GAGT
*
14719317 GGGCTGAA
1 AGGCTGAA
14719325 GATTGTAGGT
Statistics
Matches: 714, Mismatches: 66, Indels: 30
0.88 0.08 0.04
Matches are distributed among these distances:
260 240 0.34
261 4 0.01
262 32 0.04
263 37 0.05
264 316 0.44
265 82 0.11
266 3 0.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (261 bp):
AGGCTGAAAATTATAGATCTTGTTTCCCTAAGATTGCAGTGAAGCAGATCGAAGACGGCGAATCT
AGGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCAAGACCTAGCTCCCTAAAGTTGTAGTGGAG
TAGGCTAAAATTGCAGATCTCGTCTCCCTGAAGTTGCAGTGAAGCAAATCAAAGACGACAAATCT
TGGCTTCCTGAAGATGCAGCGAAGCAGATTTAAGCACATCCTAGCTCCCTAAAGTTGTAGTGGAG
T
Found at i:14718755 original size:45 final size:44
Alignment explanation
Indices: 14718292--14718760 Score: 175
Period size: 45 Copynumber: 10.6 Consensus size: 44
14718282 ATCTTGTTTC
* * *
14718292 CCTGAAATTGAAGTGAAGCAGATCGAAGACGGCGAATCTGAGCTT
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCGAATCT-AGCTT
* * ** * * *
14718337 CCTGAAGTTGCAGTGAAACAGATTTAAG-CCACCAACCTAGCTC
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCGAATCTAGCTT
* * * * * * *** * *
14718380 CCTAAAGTTGTAGTGGAGTAGGT-TAAAATTTC-AGATCTTGTTT
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCGA-ATCTAGCTT
* *
14718423 CCCTAAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTGAGCTT
1 -CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCGAATCT-AGCTT
** * ** * * *
14718469 TTTGAAGTTGCAGTGAAGCAGATTTAAG-CCACCAACCTAGCTC
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCGAATCTAGCTT
* * * * * * *** * *
14718512 CCTAAAGTTGTAGTGGAGTAG-GCTAAAATTTC-AGATCTCGTTT
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCGA-ATCTAGCTT
* * *
14718555 CCCTAAAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTGAGCTT
1 -CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCGAATCT-AGCTT
* ** * * *
14718601 CCTGAAGTTGCAGTGAAGCAGATTTAAG-CCACCAACCTAGCTC
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCGAATCTAGCTT
* * * * * * *** *
14718644 CCTAAAGTTGTAGTGGAGTAG-GCTAAAATTCCAGATAT-T-GTTTT
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGC-GA-ATCTAG-CTT
* * * *
14718688 CTTGAAGCTGCAGTGAAACAGATCGAAGACGGCGAATCTGAGCTT
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCGAATCT-AGCTT
*
14718733 CCTGAAGTTGCAGTGAAGCAGATTTAAG
1 CCTGAAGTTGCAGTGAAGCAGATCTAAG
14718761 CCACCATCCT
Statistics
Matches: 289, Mismatches: 115, Indels: 40
0.65 0.26 0.09
Matches are distributed among these distances:
42 11 0.04
43 77 0.27
44 74 0.26
45 118 0.41
46 9 0.03
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (44 bp):
CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCGAATCTAGCTT
Found at i:14719590 original size:44 final size:44
Alignment explanation
Indices: 14719517--14720009 Score: 797
Period size: 44 Copynumber: 11.2 Consensus size: 44
14719507 CAAGACCAGA
* * *
14719517 CAGATTTGGCGTCTCTGTAGTGACGGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
14719561 CAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
*
14719605 CAGATTTGGCCTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
* * * * *
14719649 TAGATTTGGCCTCTCTGTACTGGCGGAGAACAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
*
14719693 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
* *
14719737 CAGATTTGGTGTCTCTGTTTTGGCAGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
*
14719781 CAGATTTGGCGTCTCTGTATTAGCAGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
** * *
14719825 CAGATTTGATGTCTCTGTATTGGCGGAGAGTAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
*
14719869 CATATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
*
14719913 CAGATTTGGTGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
* *
14719957 CAAATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
14720001 CAGATTTGG
1 CAGATTTGG
14720010 TGTTCCTGAG
Statistics
Matches: 415, Mismatches: 34, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 415 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.26
Consensus pattern (44 bp):
CAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
Found at i:14721173 original size:12 final size:12
Alignment explanation
Indices: 14721156--14721181 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14721146 AAAATAGGGC
14721156 TTTAGCGGCGTT
1 TTTAGCGGCGTT
14721168 TTTAGCGGCGTT
1 TTTAGCGGCGTT
14721180 TT
1 TT
14721182 ATGATAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:14721252 original size:42 final size:41
Alignment explanation
Indices: 14721206--14721332 Score: 130
Period size: 41 Copynumber: 3.1 Consensus size: 41
14721196 CAAAACTTTT
*
14721206 AAAACACAGAGCAATAGCGCCG-TTTTACCAAAAACGCCGCTA
1 AAAAC-CAGAGCATTAGCGCCGCTTTT-CCAAAAACGCCGCTA
* * ***
14721248 AAAACCATAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGCCGCTTTTCCAAAAACGCCGCTA
* *** *
14721289 AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCTGCTA
1 AAAACCAGAGCATTAGCGCCGCTTTTCCAAAAACGCCGCTA
14721330 AAA
1 AAA
14721333 GTCATATAAC
Statistics
Matches: 76, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
41 67 0.88
42 9 0.12
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.19
Consensus pattern (41 bp):
AAAACCAGAGCATTAGCGCCGCTTTTCCAAAAACGCCGCTA
Found at i:14721511 original size:14 final size:14
Alignment explanation
Indices: 14721489--14721540 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
14721479 TTAATTATCA
*
14721489 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
*
14721503 TTATGGTTTAAGAT
1 TTATGGTTTAAGGT
* *
14721517 ATATGGTTTAGGGT
1 TTATGGTTTAAGGT
*
14721531 TTAAGGTTTA
1 TTATGGTTTA
14721541 TGAATTAACT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:14721542 original size:21 final size:21
Alignment explanation
Indices: 14721494--14721542 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
14721484 TATCATTATA
* *
14721494 GTTTAAGGTTTATGGTTTAAG
1 GTTTATGGTTTAGGGTTTAAG
* *
14721515 ATATATGGTTTAGGGTTTAAG
1 GTTTATGGTTTAGGGTTTAAG
14721536 GTTTATG
1 GTTTATG
14721543 AATTAACTAC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (21 bp):
GTTTATGGTTTAGGGTTTAAG
Found at i:14721632 original size:14 final size:15
Alignment explanation
Indices: 14721605--14721633 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
14721595 TTTATGATGA
14721605 ATTATGAGTTTAGGG
1 ATTATGAGTTTAGGG
14721620 ATTATGA-TTTAGGG
1 ATTATGAGTTTAGGG
14721634 TTCAGGGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.28, C:0.00, G:0.31, T:0.41
Consensus pattern (15 bp):
ATTATGAGTTTAGGG
Found at i:14722699 original size:37 final size:37
Alignment explanation
Indices: 14722633--14722741 Score: 141
Period size: 37 Copynumber: 2.9 Consensus size: 37
14722623 TGATCAGAAA
*
14722633 AACCCATCTCCTCCGTCGCCTTCTA-CCCGTGCATCGC
1 AACCCATCTCCTCCATCGCCTTC-ACCCCGTGCATCGC
* *
14722670 AACTCAT-TCCCTCCATCGTCTTCACCCCGTGCATCGC
1 AACCCATCT-CCTCCATCGCCTTCACCCCGTGCATCGC
* *
14722707 AACCCATCTCCTCCATCGCCTTCGCCCTGTGCATC
1 AACCCATCTCCTCCATCGCCTTCACCCCGTGCATC
14722742 TGCTGCATAG
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
36 2 0.03
37 59 0.95
38 1 0.02
ACGTcount: A:0.15, C:0.48, G:0.12, T:0.26
Consensus pattern (37 bp):
AACCCATCTCCTCCATCGCCTTCACCCCGTGCATCGC
Found at i:14726193 original size:19 final size:19
Alignment explanation
Indices: 14726171--14726211 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
14726161 TTTATTAATA
14726171 TTTTTA-TATTTAATCTAG
1 TTTTTATTATTTAATCTAG
* *
14726189 TTTTTATTATTTATTTTAG
1 TTTTTATTATTTAATCTAG
14726208 TTTT
1 TTTT
14726212 GATTCTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.22, C:0.02, G:0.05, T:0.71
Consensus pattern (19 bp):
TTTTTATTATTTAATCTAG
Found at i:14726449 original size:28 final size:27
Alignment explanation
Indices: 14726396--14726449 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
14726386 TATTTTGATA
* *
14726396 ATGAATTTTAAATTTTTTATATTTTTC
1 ATGAATTTTAAATATTTTATAATTTTC
*
14726423 ATGACTTTTATAATATTTTATAATTTT
1 ATGAATTTTA-AATATTTTATAATTTT
14726450 TTTTTGAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (27 bp):
ATGAATTTTAAATATTTTATAATTTTC
Found at i:14730466 original size:12 final size:12
Alignment explanation
Indices: 14730446--14730483 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
14730436 ACTTCATGTA
14730446 TAATA-CAAAAT
1 TAATACCAAAAT
14730457 TAATACCAAAAT
1 TAATACCAAAAT
*
14730469 TAACACCAAAAT
1 TAATACCAAAAT
14730481 TAA
1 TAA
14730484 CAAAAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
11 5 0.20
12 20 0.80
ACGTcount: A:0.61, C:0.16, G:0.00, T:0.24
Consensus pattern (12 bp):
TAATACCAAAAT
Found at i:14730484 original size:12 final size:12
Alignment explanation
Indices: 14730451--14730485 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
14730441 ATGTATAATA
*
14730451 CAAAATTAATAC
1 CAAAATTAACAC
14730463 CAAAATTAACAC
1 CAAAATTAACAC
14730475 CAAAATTAACA
1 CAAAATTAACA
14730486 AAAAAAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (12 bp):
CAAAATTAACAC
Found at i:14737157 original size:24 final size:24
Alignment explanation
Indices: 14737121--14737168 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
14737111 CTAATAAATG
*
14737121 TAAATATAAATTAT-ACTTATTTT
1 TAAATATAAATTATCACATATTTT
*
14737144 TAAATTTATAATTATCACATATTTT
1 TAAATATA-AATTATCACATATTTT
14737169 ATTTTACTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 7 0.33
24 6 0.29
25 8 0.38
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (24 bp):
TAAATATAAATTATCACATATTTT
Found at i:14741464 original size:58 final size:57
Alignment explanation
Indices: 14741402--14741525 Score: 135
Period size: 58 Copynumber: 2.1 Consensus size: 57
14741392 AATGTATATT
* * * *
14741402 GAAAATAGATATATAATAATATTTAAAAGCATATACATAAT-ATATATA-ATATATGAAA
1 GAAAATAGACACATAAT-ATA-TTAAAA-CATATACATAATCACATACATATATATGAAA
* *
14741460 GAAAATATACACATAATATATTAAAATATATACATAATGCACATACATATATATGAAA
1 GAAAATAGACACATAATATATTAAAACATATACATAAT-CACATACATATATATGAAA
14741518 GACAAATA
1 GA-AAATA
14741526 CATGACACGA
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
55 11 0.20
56 6 0.11
57 8 0.14
58 26 0.46
59 5 0.09
ACGTcount: A:0.56, C:0.07, G:0.06, T:0.30
Consensus pattern (57 bp):
GAAAATAGACACATAATATATTAAAACATATACATAATCACATACATATATATGAAA
Found at i:14741588 original size:22 final size:22
Alignment explanation
Indices: 14741557--14741610 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
14741547 CACATAGTAT
14741557 ATATATACAT-ATATATAAAAAA
1 ATATATACATAATATAT-AAAAA
*
14741579 ATGTATACATAATATATAAAAA
1 ATATATACATAATATATAAAAA
14741601 ATATATACAT
1 ATATATACAT
14741611 GCATATATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 23 0.79
23 6 0.21
ACGTcount: A:0.59, C:0.06, G:0.02, T:0.33
Consensus pattern (22 bp):
ATATATACATAATATATAAAAA
Found at i:14741692 original size:22 final size:21
Alignment explanation
Indices: 14741667--14741709 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
14741657 ATATGTGTAG
*
14741667 CATGGGATATAAAAAGTATATA
1 CATGGGACATAAAAA-TATATA
* *
14741689 CATGTGACATACAAATATATA
1 CATGGGACATAAAAATATATA
14741710 TTAACGAAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.49, C:0.09, G:0.14, T:0.28
Consensus pattern (21 bp):
CATGGGACATAAAAATATATA
Found at i:14743469 original size:43 final size:45
Alignment explanation
Indices: 14743414--14743536 Score: 144
Period size: 43 Copynumber: 2.8 Consensus size: 45
14743404 ACATTTGATT
*
14743414 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAAT-
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGTCTATAAATC
* * * * *
14743458 TT-GGCTTGTTACCCTACTGCTTA-GGGTGATAAGATCTATAGATC
1 TTCAGCCTGTTACCCTACTGCTTAGGGGT-TTAAGGTCTATAAATC
* *
14743502 TTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGG
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGG
14743537 CTTGGTGGTT
Statistics
Matches: 63, Mismatches: 12, Indels: 7
0.77 0.15 0.09
Matches are distributed among these distances:
42 4 0.06
43 30 0.48
44 4 0.06
45 22 0.35
46 3 0.05
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.36
Consensus pattern (45 bp):
TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGTCTATAAATC
Found at i:14743748 original size:88 final size:88
Alignment explanation
Indices: 14743595--14743756 Score: 209
Period size: 88 Copynumber: 1.8 Consensus size: 88
14743585 ACTGTCTTTT
* * * *
14743595 GATCTGCTTCCCTACTGCTTAGGGTGAGAAGATCTTTAAAATTTAGCTTCTTACCCTACTACTTA
1 GATCTGCTTCCCTACTGCTTAGGGGGAGAAGATCTTTAAAATGTAACCTCTTACCCTACTACTTA
14743660 GGGGGTTAAAGCTTGTTGCCTTC
66 GGGGGTTAAAGCTTGTTGCCTTC
* ** * * *
14743683 GATCTGTTTCCCTACTGCTTAGGGGGTTAAGAT-TTTGTAAATGTAACCTGTTACCCTACTGCTT
1 GATCTGCTTCCCTACTGCTTAGGGGGAGAAGATCTTT-AAAATGTAACCTCTTACCCTACTACTT
*
14743747 AGGGGTTTAA
65 AGGGGGTTAA
14743757 GGTTTGGTGG
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
87 3 0.05
88 59 0.95
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.37
Consensus pattern (88 bp):
GATCTGCTTCCCTACTGCTTAGGGGGAGAAGATCTTTAAAATGTAACCTCTTACCCTACTACTTA
GGGGGTTAAAGCTTGTTGCCTTC
Found at i:14743776 original size:88 final size:88
Alignment explanation
Indices: 14743592--14743780 Score: 202
Period size: 88 Copynumber: 2.1 Consensus size: 88
14743582 TTCACTGTCT
* * * *
14743592 TTTGATCTGCTTCCCTACTGCTTAGGGTGAGAAGATCTTTAAAATTTAGCTTCTTACCCTACTAC
1 TTTGATCTGCTTCCCTACTGCTTAGGGGGAGAAGATCTTTAAAATGTAACCTCTTACCCTACTAC
*
14743657 TTAGGGGGTTAAAGCTTGTTGCC
66 TTAGGGGGTTAAAGCTTGGTGCC
* * ** * * *
14743680 TTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGAT-TTTGTAAATGTAACCTGTTACCCTACTG
1 TTTGATCTGCTTCCCTACTGCTTAGGGGGAGAAGATCTTT-AAAATGTAACCTCTTACCCTACTA
* * * *
14743744 CTTAGGGGTTTAAGGTTTGGTG-G
65 CTTAGGGGGTTAAAGCTTGGTGCC
14743767 TTTGAATCTGCTTC
1 TTTG-ATCTGCTTC
14743781 ACTGTAATTT
Statistics
Matches: 81, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
87 6 0.07
88 75 0.93
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.39
Consensus pattern (88 bp):
TTTGATCTGCTTCCCTACTGCTTAGGGGGAGAAGATCTTTAAAATGTAACCTCTTACCCTACTAC
TTAGGGGGTTAAAGCTTGGTGCC
Found at i:14743816 original size:222 final size:222
Alignment explanation
Indices: 14743464--14743981 Score: 754
Period size: 222 Copynumber: 2.3 Consensus size: 222
14743454 AAATTTGGCT
* * * * * * * * *
14743464 TGTTACCCTACTGCTTAGGGTGATAAGATCTATAGATCTTCAGCCTGTTTCCCTACTGCTTAGGG
1 TGTTTCCCTACTGCTTAGGGGGTTAAGATTTGTAAATCGTCAACCTGTTACCCTACTGCTTAGGG
* *
14743529 GGTTAAGGCTTGGTGGTTTGAATCTACTTCACTGCAACTTCAGGAGGGCAAGATTCACTGTCTTT
66 GTTTAAGGCTTGGTGGTTTGAATCTACTTCACTGCAACTTCAGGAGGGCAAGATTCACCGTCTTT
* * *
14743594 TGATCTGCTTCCCTACTGCTTAGGGTGAGAAGATCTTTAAAATTTAGCTTCTTACCCTACTACTT
131 TAATCTGCTTCCCTACTGCTTAGGGTGAGAAAATCTTTAAAATTCAGCTTCTTACCCTACTACTT
14743659 AGGGGGTTAAAGCTTGTTGCCTTCGATC
196 A-GGGGTTAAAGCTTGTTGCCTTCGATC
14743687 TGTTTCCCTACTGCTTAGGGGGTTAAGATTTTGTAAAT-GT-AACCTGTTACCCTACTGCTTAGG
1 TGTTTCCCTACTGCTTAGGGGGTTAAGA-TTTGTAAATCGTCAACCTGTTACCCTACTGCTTAGG
* * * * *
14743750 GGTTTAAGGTTTGGTGGTTTGAATCTGCTTCACTGTAATTTTAGGAGGGCAAGATTCACCGTCTT
65 GGTTTAAGGCTTGGTGGTTTGAATCTACTTCACTGCAACTTCAGGAGGGCAAGATTCACCGTCTT
* * * *
14743815 TTAATCTGCTTCCCTATTGCTTAGGGTGATAAAATCTTTAAAATTCAGCTTGTTACCCTACTATT
130 TTAATCTGCTTCCCTACTGCTTAGGGTGAGAAAATCTTTAAAATTCAGCTTCTTACCCTACTACT
*
14743880 TAGGGGTTAAAGCTTGTTGCTTTCGATC
195 TAGGGGTTAAAGCTTGTTGCCTTCGATC
* * *
14743908 TGTTTCCCTACTGCTTAGGGGGTTAAGATTTGTACATCTTCAGCCTGTTACCCTACTGCTTAGGG
1 TGTTTCCCTACTGCTTAGGGGGTTAAGATTTGTAAATCGTCAACCTGTTACCCTACTGCTTAGGG
14743973 GTTT-AGGCT
66 GTTTAAGGCT
14743982 CACCATCCTC
Statistics
Matches: 264, Mismatches: 28, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
220 8 0.03
221 58 0.22
222 166 0.63
223 26 0.10
224 6 0.02
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.37
Consensus pattern (222 bp):
TGTTTCCCTACTGCTTAGGGGGTTAAGATTTGTAAATCGTCAACCTGTTACCCTACTGCTTAGGG
GTTTAAGGCTTGGTGGTTTGAATCTACTTCACTGCAACTTCAGGAGGGCAAGATTCACCGTCTTT
TAATCTGCTTCCCTACTGCTTAGGGTGAGAAAATCTTTAAAATTCAGCTTCTTACCCTACTACTT
AGGGGTTAAAGCTTGTTGCCTTCGATC
Found at i:14743971 original size:88 final size:88
Alignment explanation
Indices: 14743818--14744071 Score: 273
Period size: 88 Copynumber: 2.9 Consensus size: 88
14743808 CCGTCTTTTA
* * * * * * **
14743818 ATCTGCTTCCCTATTGCTTAGGGTGATAAAATCTTTAAAATTCAGCTTGTTACCCTACTATTTAG
1 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTCAGCTTGTTACCCTACTGCTTAG
** *
14743883 GGGTTAAAGCTTGTTGC-T-TTCG
65 GGGTTAAAGCTTGTACCATCCTCG
* * *
14743905 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATTTGTACATCTTCAGCCTGTTACCCTACTGCTTA
1 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTA-A-ATTCAGCTTGTTACCCTACTGCTTA
* * *
14743970 GGGGTTTAGGC-T-CACCATCCTCG
64 GGGGTTAAAGCTTGTACCATCCTCG
* *
14743993 ATCTGTTTCCCTACTGCTTAGGGGTTTAAGATCTGTAAATTCAGCTTGTTACCCTACAGCTTAGG
1 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCTTGTTACCCTACTGCTTA-G
14744058 GGGTTAAAGCTTGT
65 GGGTTAAAGCTTGT
14744072 GAACTCACCT
Statistics
Matches: 135, Mismatches: 25, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
86 24 0.18
87 42 0.31
88 69 0.51
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.37
Consensus pattern (88 bp):
ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCTTGTTACCCTACTGCTTAGG
GGTTAAAGCTTGTACCATCCTCG
Found at i:14744048 original size:43 final size:43
Alignment explanation
Indices: 14743855--14744064 Score: 129
Period size: 43 Copynumber: 4.8 Consensus size: 43
14743845 AAAATCTTTA
** * *
14743855 AAATTCAGCTTGTTACCCTACTATTTAGGGGTTAAAGCT-TGTT
1 AAATTCAGCTTGTTACCCTACTGCTTAGGGGTTTAAGATCTG-T
*** * * * *
14743898 GCTTTC-GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATTTGT
1 AAATTCAGCT-TGTTACCCTACTGCTTAGGGGTTTAAGATCTGT
* * * * ***
14743941 ACATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAGGCTCACC
1 A-A-ATTCAGCTTGTTACCCTACTGCTTAGGGGTTTAAGATCTGT
*** * *
14743986 ATCCTC-GATCTGTTTCCCTACTGCTTAGGGGTTTAAGATCTGT
1 AAATTCAGCT-TGTTACCCTACTGCTTAGGGGTTTAAGATCTGT
* *
14744029 AAATTCAGCTTGTTACCCTACAGCTTAGGGGGTTAA
1 AAATTCAGCTTGTTACCCTACTGCTTAGGGGTTTAA
14744065 AGCTTGTGAA
Statistics
Matches: 120, Mismatches: 40, Indels: 14
0.69 0.23 0.08
Matches are distributed among these distances:
42 3 0.03
43 83 0.69
44 4 0.03
45 29 0.24
46 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (43 bp):
AAATTCAGCTTGTTACCCTACTGCTTAGGGGTTTAAGATCTGT
Found at i:14756391 original size:22 final size:22
Alignment explanation
Indices: 14756360--14756413 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
14756350 CATAGTATAT
14756360 ATATATACAT-ATATATAAAAAA
1 ATATATACATAATATAT-AAAAA
*
14756382 ATGTATACATAATATATAAAAA
1 ATATATACATAATATATAAAAA
14756404 ATATATACAT
1 ATATATACAT
14756414 GCATATATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 23 0.79
23 6 0.21
ACGTcount: A:0.59, C:0.06, G:0.02, T:0.33
Consensus pattern (22 bp):
ATATATACATAATATATAAAAA
Found at i:14756495 original size:22 final size:21
Alignment explanation
Indices: 14756470--14756512 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
14756460 ATATGTGTAG
*
14756470 CATGGGATATAAAAAGTATATA
1 CATGGGACATAAAAA-TATATA
* *
14756492 CATGTGACATACAAATATATA
1 CATGGGACATAAAAATATATA
14756513 TTAACGAAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.49, C:0.09, G:0.14, T:0.28
Consensus pattern (21 bp):
CATGGGACATAAAAATATATA
Found at i:14756692 original size:13 final size:13
Alignment explanation
Indices: 14756674--14756698 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14756664 ATTAAAATTT
14756674 AAAAAAACAAAAC
1 AAAAAAACAAAAC
14756687 AAAAAAACAAAA
1 AAAAAAACAAAA
14756699 AACAGTAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAAAACAAAAC
Found at i:14759898 original size:22 final size:21
Alignment explanation
Indices: 14759873--14759917 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
14759863 TTAAAGTACA
* *
14759873 ATTATTTTATAAAATAAATCAT
1 ATTATTTTAAAAAAAAAAT-AT
14759895 ATTATTTTAAAAAAAAAATAT
1 ATTATTTTAAAAAAAAAATAT
14759916 AT
1 AT
14759918 GATAAACATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (21 bp):
ATTATTTTAAAAAAAAAATAT
Found at i:14762462 original size:75 final size:75
Alignment explanation
Indices: 14762339--14762485 Score: 258
Period size: 75 Copynumber: 2.0 Consensus size: 75
14762329 ACAATCCATG
* *
14762339 TTACATTCCCAATTACTTAGATCCAATTATGGCTTTGATCCCTCTGCAATGCTCATGTTTAGGAT
1 TTACATTCCAAATTACTTAGATCCAATTATGGCTTTGATCCCTCTGCAATGCTCATATTTAGGAT
14762404 TTAGTTCTTA
66 TTAGTTCTTA
* *
14762414 TTACATTCTAAATTACTTAGATCCAATTATGTCTTTGATCCCTCTGCAATGCTCATATTTAGGAT
1 TTACATTCCAAATTACTTAGATCCAATTATGGCTTTGATCCCTCTGCAATGCTCATATTTAGGAT
14762479 TTAGTTC
66 TTAGTTC
14762486 CTATAATTTG
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
75 68 1.00
ACGTcount: A:0.25, C:0.20, G:0.12, T:0.42
Consensus pattern (75 bp):
TTACATTCCAAATTACTTAGATCCAATTATGGCTTTGATCCCTCTGCAATGCTCATATTTAGGAT
TTAGTTCTTA
Found at i:14766039 original size:22 final size:22
Alignment explanation
Indices: 14765996--14766039 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
14765986 TTTTTCACTT
**
14765996 TCCATAACATTTAAAATTGTCA
1 TCCATAACATTTAAAAGCGTCA
*
14766018 TCCATAACATTTCAAAGCGTCA
1 TCCATAACATTTAAAAGCGTCA
14766040 CAAAAACCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.39, C:0.23, G:0.07, T:0.32
Consensus pattern (22 bp):
TCCATAACATTTAAAAGCGTCA
Found at i:14767966 original size:21 final size:21
Alignment explanation
Indices: 14767931--14767986 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
14767921 AAGACCAATG
* *
14767931 AATTAAATAATATATATAA-CA
1 AATTAAAAAAAATATA-AAGCA
*
14767952 ATTTAAAAAAAATATAAAGCA
1 AATTAAAAAAAATATAAAGCA
*
14767973 AATTAAAATAAATA
1 AATTAAAAAAAATA
14767987 AAATGTAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 2 0.07
21 27 0.93
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.29
Consensus pattern (21 bp):
AATTAAAAAAAATATAAAGCA
Found at i:14768095 original size:29 final size:27
Alignment explanation
Indices: 14768020--14768125 Score: 78
Period size: 27 Copynumber: 3.9 Consensus size: 27
14768010 GATAATAAAT
* *
14768020 AAATTT-AAAATAAATAATGTGAAAAAG
1 AAATTTAAAAATAAGTAATGT-ACAAAG
* *
14768047 AAATTT-AATATCAA-CAATGTACAAA-
1 AAATTTAAAAAT-AAGTAATGTACAAAG
14768072 ACAATTTAAAAATAGAGTATATGTA-AAAG
1 A-AATTTAAAAATA-AGTA-ATGTACAAAG
* *
14768101 AAATTTTAAAATAAGTAATATACAA
1 AAATTTAAAAATAAGTAATGTACAA
14768126 GATATCAAAG
Statistics
Matches: 64, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
25 1 0.02
26 14 0.22
27 26 0.41
28 17 0.27
29 6 0.09
ACGTcount: A:0.58, C:0.05, G:0.08, T:0.28
Consensus pattern (27 bp):
AAATTTAAAAATAAGTAATGTACAAAG
Found at i:14769807 original size:27 final size:28
Alignment explanation
Indices: 14769770--14769909 Score: 175
Period size: 27 Copynumber: 5.2 Consensus size: 28
14769760 AGCATGGCTG
* *
14769770 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
14769796 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
14769824 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
14769851 CCATAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
14769878 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
14769905 CCAGA
1 CCAGA
14769910 ACGCTTCCTC
Statistics
Matches: 104, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
26 5 0.05
27 82 0.79
28 17 0.16
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.19
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:14771562 original size:26 final size:26
Alignment explanation
Indices: 14771526--14771635 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
14771516 CATGAAATTC
14771526 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
14771552 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
14771578 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
14771604 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
14771630 TTATCA
1 TTATCA
14771636 ATTTGTACCA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
26 79 0.98
27 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:14772216 original size:131 final size:130
Alignment explanation
Indices: 14771964--14772294 Score: 415
Period size: 131 Copynumber: 2.6 Consensus size: 130
14771954 TTACAATCAA
* * * * *
14771964 AACCCAGCAC-AGTAGGGCACGATTCCTCGAATTTCTAGACATCGGACATTACCTT-ATTTT-A-
1 AACCCAGCACGA-TAGGGCACGATTCCCCGAATTACCAAACATC-GACATTACCTTCGTTTTAAG
* * * *
14772025 GA-ATTTAAAGAACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAATAGGAAATC
64 GATTTTTAAAGAACATGAGCGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACAGGAAATC
14772089 GC
129 GC
*
14772091 AACCCAGCACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTGAAG
1 AACCCAGCACGATAGGGCACGATTCCCCGAATTACCAAACATCG-ACATTACCTTCGTTTT-AAG
*
14772156 GATTTTTAAAG-ACATGAGCGAAATTCCAAAGGAATATTCGATTGTTTTGAACAAACAGGAAATC
64 GATTTTTAAAGAACATGAGCGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACAGGAAATC
14772220 GC
129 GC
* * * * * *
14772222 AACCTAACACGATAGGGCACGATT-CCCAAATTACCAAACATCGAGATTGCCTTCGTTTTAAAGA
1 AACCCAGCACGATAGGGCACGATTCCCCGAATTACCAAACATCGACATTACCTTCGTTTT-AAGG
14772286 ATTTTTAAA
65 ATTTTTAAA
14772295 TGAATAATTA
Statistics
Matches: 179, Mismatches: 18, Indels: 12
0.86 0.09 0.06
Matches are distributed among these distances:
126 1 0.01
127 47 0.26
128 5 0.03
129 26 0.15
130 18 0.10
131 75 0.42
132 7 0.04
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (130 bp):
AACCCAGCACGATAGGGCACGATTCCCCGAATTACCAAACATCGACATTACCTTCGTTTTAAGGA
TTTTTAAAGAACATGAGCGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACAGGAAATCGC
Found at i:14774752 original size:28 final size:27
Alignment explanation
Indices: 14774690--14774752 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
14774680 AGAGTTTAAC
14774690 ATAAGATATATAAAACAATTTTAAAATA
1 ATAA-ATATATAAAACAATTTTAAAATA
**
14774718 A-ATAATATATAAGTCAATTTTAAAAATA
1 ATA-AATATATAAAACAATTTT-AAAATA
14774746 ATAAATA
1 ATAAATA
14774753 AGAATCTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
27 16 0.53
28 13 0.43
29 1 0.03
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (27 bp):
ATAAATATATAAAACAATTTTAAAATA
Found at i:14776074 original size:44 final size:44
Alignment explanation
Indices: 14776024--14776717 Score: 268
Period size: 44 Copynumber: 15.1 Consensus size: 44
14776014 ATCCACAAAC
* * *
14776024 CTTATCTCCCTGAAGTTGCAATGGAGTAGGTTGAAGTTACTAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACTAGT
* **
14776068 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGTTACAAATCACAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAC---T----AGT
* **
14776119 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTTACAAATACCAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAC---T----AGT
* * *
14776170 CTTATCTCCCTGAAGTTGCACTGGAGTAGGTTGAAGTTACTAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACTAGT
* * * * **
14776214 CTTATCTCCCTGAATTTGCAGTGGGGAAGACT-ACAAATAGC-AGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGA-AGTTA-CTAG-T
* * * * ** * *
14776259 CTTATCTCTCTGAAGTTACAGTAGAGTAGATCAAAGCTACATATT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAC-TAGT
* * * *
14776304 ACAAATGTTATCTCCCTAAAGTTGCAGTGGAGTAGGTTGAAGTCACTAGT
1 -C-----TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACTAGT
* ** * * * *
14776354 CTTATCTCCCTGAAGTTACAACGGAGCAGA-TCAA-ATACGGCGAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA---CTAGT
* * * * * ***
14776399 CTTATTTTCTTGAAGTTGCAGCGAAGCAGATTGAAACCACTAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACTAGT
* * * * *
14776443 CTTATCTCCCTAAAGTTGAAATGGAGCAGGTTAAAGTTA-TAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACT-AGT
* * * * * *
14776487 CTTATCTCCCTGAAGTTGCAGTGGAGTAGACTCAAGATAGCGAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-CTAGT
* * * * * *
14776532 CTTATCTCTCGGAAGTTGCAGTAGAGCAGATTAAAGCTA-TAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACT-AGT
* ** * ** * * *
14776576 CCTATAGCTCTGAAGTTGCAGCAGATCAGA-TCAAATCTACCATGATGAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGT-TA-C-T-A-G--T
* ** * ** **
14776626 CTTATCTCTCTGAAGTTGCAGTGGAATAGATCGAAGCCACTAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACTAGT
* * *
14776670 CTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAGTTACAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACTAGT
14776714 CTTA
1 CTTA
14776718 GCCCCCCGAA
Statistics
Matches: 480, Mismatches: 134, Indels: 72
0.70 0.20 0.10
Matches are distributed among these distances:
42 1 0.00
43 8 0.02
44 221 0.46
45 91 0.19
46 6 0.01
47 5 0.01
48 2 0.00
49 2 0.00
50 28 0.06
51 116 0.24
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACTAGT
Found at i:14776144 original size:51 final size:51
Alignment explanation
Indices: 14776068--14776209 Score: 223
Period size: 51 Copynumber: 2.8 Consensus size: 51
14776058 AGTTACTAGT
*
14776068 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGTTACAAAT-CACAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATAC-CAAAC
*
14776119 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTTACAAATACCAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATACCAAAC
* * *
14776170 CTTATCTCCCTGAAGTTGCACTGGAGTAGGTTGAAGTTAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAC
14776210 TAGTCTTATC
Statistics
Matches: 84, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
51 83 0.99
52 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (51 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATACCAAAC
Found at i:14776401 original size:140 final size:138
Alignment explanation
Indices: 14776025--14776570 Score: 485
Period size: 140 Copynumber: 3.9 Consensus size: 138
14776015 TCCACAAACC
*
14776025 TTATCTCCCTGAAGTTGCAATGGAGTAGGTTGAAGTTACTAGTCTTATCTCCCTGAAGTTACAGT
1 TTATCTCCCTAAAGTTGCAATGGAGTAGGTTGAAGTTACTAGTCTTATCTCCCTGAAGTTACAGT
* * * * * * *
14776090 GGAGCAGATTGAAGTTACAAATCA-CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CTGA
66 GGAGCAGACTCAAG------AT-AGCGAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATC-AA
*
14776153 AGTTACA-AATACCAAA
123 AGCTACATAATA-CAAA
* * * *
14776169 CCTTATCTCCCTGAAGTTGCACTGGAGTAGGTTGAAGTTACTAGTCTTATCTCCCTGAATTTGCA
1 --TTATCTCCCTAAAGTTGCAATGGAGTAGGTTGAAGTTACTAGTCTTATCTCCCTGAAGTTACA
* * * *
14776234 GTGGGGAAGACTACAA-ATAGC-AGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCAAAGCT
64 GTGGAGCAGACT-CAAGATAGCGA-ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAGCT
*
14776297 ACATATTACAAA
127 ACATAATACAAA
* *
14776309 TGTTATCTCCCTAAAGTTGCAGTGGAGTAGGTTGAAGTCACTAGTCTTATCTCCCTGAAGTTACA
1 --TTATCTCCCTAAAGTTGCAATGGAGTAGGTTGAAGTTACTAGTCTTATCTCCCTGAAGTTACA
** * * *
14776374 ACGGAGCAGA-TCAA-ATACGGCGAATCTTAT-TTTCTTGAAGTTGCAG-CGAAGCAGATTGAAA
64 GTGGAGCAGACTCAAGATA--GCGAATCTTATCTCTC-TGAAGTTGCAGTAG-AGCAGA-TCAAA
* *
14776435 -CCAC-TAGT-C---
124 GCTACATAATACAAA
* * * *
14776444 TTATCTCCCTAAAGTTGAAATGGAGCAGGTTAAAGTTA-TAAGTCTTATCTCCCTGAAGTTGCAG
1 TTATCTCCCTAAAGTTGCAATGGAGTAGGTTGAAGTTACT-AGTCTTATCTCCCTGAAGTTACAG
* * *
14776508 TGGAGTAGACTCAAGATAGCGAATCTTATCTCTCGGAAGTTGCAGTAGAGCAGATTAAAGCTA
65 TGGAGCAGACTCAAGATAGCGAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAGCTA
14776571 TAAATCCTAT
Statistics
Matches: 336, Mismatches: 47, Indels: 47
0.78 0.11 0.11
Matches are distributed among these distances:
132 5 0.01
133 91 0.27
134 8 0.02
135 3 0.01
138 7 0.02
139 10 0.03
140 132 0.39
141 9 0.03
146 69 0.21
147 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (138 bp):
TTATCTCCCTAAAGTTGCAATGGAGTAGGTTGAAGTTACTAGTCTTATCTCCCTGAAGTTACAGT
GGAGCAGACTCAAGATAGCGAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAGCTACAT
AATACAAA
Found at i:14776699 original size:227 final size:230
Alignment explanation
Indices: 14776395--14777028 Score: 656
Period size: 227 Copynumber: 2.8 Consensus size: 230
14776385 CAAATACGGC
* * * * ** *
14776395 GAATCTTAT-TTTCTTGAAGTTGCAG-CGAAGCAGATTGAAACCACTAGTCTTATCTCCCTAAAG
1 GAATCTTATCTCTC-TGAAGTTGCAGTGGAA-TAGA-TGAAGCCACTAACCTTATCTCCCTGAAG
* * * * *
14776458 TTGAAATGGAGCAGGTTAAAGTTATAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTCAAG
63 TTGCAATGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAT
* * * *
14776523 ATAGCGAATCTTATCTCTCGGAAGTTGCAGTAGAGCAGATTAAAGCT-A-TA-AA-TCCTATAGC
128 ATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGCTAAGTACAAGTCCTATACC
*
14776584 TCTGAAGTTGCAGCAGATCAGATCAAATCTACCATGAT
193 TCTGAAGTCGCAGCAGATCAGATCAAATCTACCATGAT
14776622 GAATCTTATCTCTCTGAAGTTGCAGTGGAATAGATCGAAGCCACTAACCTTATCTCCCTGAAGTT
1 GAATCTTATCTCTCTGAAGTTGCAGTGGAATAGAT-GAAGCCACTAACCTTATCTCCCTGAAGTT
* * * * * * *
14776687 GCAGTAGAGCAGGTTGAAGTTACAAGTCTTAGCCCCCCGAAATTACAGTAGG-GTAGACTGAATA
65 GCAATGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGT-GGAGTAGACTGAATA
* * * * *
14776751 TAGTAAATCTTAT-TTTCCTGAAGTTGCAGTGGAATAGGTTAAAGCTACGAGTTACAAGTCCTAT
129 TAGCAAATCTTATCTCT-CTGAAGTTGCAGTAGAGTAGATTAAAGCTA--AG-TACAAGTCCTAT
** * * * *
14776815 ACCTCTGAAGTCGCAGTGGGTCGGATCAAATCTATCATGGT
190 ACCTCTGAAGTCGCAGCAGATCAGATCAAATCTACCATGAT
* * * * * * * * * *
14776856 GAATTTTATCTCCCTAAAATTTCA-TGGAGTAGATGTAGGTCATTAACCTTATCTTCCTGAAGTT
1 GAATCTTATCTCTCTGAAGTTGCAGTGGAATAGATG-AAGCCACTAACCTTATCTCCCTGAAGTT
* * * *
14776920 ACAATGGAGCAGGTTGAAGATGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAATAGACTGAATAT
65 GCAATGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAATAT
* *
14776985 AGCAAATCTTATCTCTCTGAAGTTGTAGTAGAGTAGATTGAAGC
130 AGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGC
14777029 CACAAACCTT
Statistics
Matches: 329, Mismatches: 63, Indels: 24
0.79 0.15 0.06
Matches are distributed among these distances:
226 3 0.01
227 132 0.40
228 8 0.02
230 1 0.00
232 5 0.02
233 120 0.36
234 60 0.18
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (230 bp):
GAATCTTATCTCTCTGAAGTTGCAGTGGAATAGATGAAGCCACTAACCTTATCTCCCTGAAGTTG
CAATGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAATATA
GCAAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGCTAAGTACAAGTCCTATACCTCT
GAAGTCGCAGCAGATCAGATCAAATCTACCATGAT
Found at i:14776948 original size:233 final size:234
Alignment explanation
Indices: 14776443--14777009 Score: 564
Period size: 233 Copynumber: 2.5 Consensus size: 234
14776433 AACCACTAGT
* * * * * * * * * *
14776443 CTTATCTCCCTAAAGTTGA-AATGGAGCAGGTTAAAGTTATAAGTCTTATCTCCCTGAAGTTGCA
1 CTTATCTCCCTGAAGTT-ACAATAGAGCAGGTTGAAGATACAAGTCTTAGCCCCCCGAAATTACA
* * * * * * ** *
14776507 GTGGAGTAGACTCAAGATAGCGAATCTTATCTCTCGGAAGTTGCAGTAGAGCAGATTAAAGCT--
65 GTGGAATAGACTGAATATAGCAAATCTTATCTCTCTGAAGTTGCAGTGGAATAGGTTAAAGCTAC
* *
14776570 -A--TA-AA-TCCTATAGCTCTGAAGTTGCAGCAGATCAGATCAAATCTACCATGATGAATCTTA
130 GAGTTACAAGTCCTATACCTCTGAAGTCGCAGCAGATCAGATCAAATCTACCATGATGAATCTTA
* * *
14776630 TCTCTCTGAAGTTGCAGTGGAATAGATCGAAGCCACTAAC
195 TCTCCCTAAAATTGCAGTGGAATAGATCGAAGCCACTAAC
* * *
14776670 CTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAGTTACAAGTCTTAGCCCCCCGAAATTACAG
1 CTTATCTCCCTGAAGTTACAATAGAGCAGGTTGAAGATACAAGTCTTAGCCCCCCGAAATTACAG
* * *
14776735 TAGG-GTAGACTGAATATAGTAAATCTTAT-TTTCCTGAAGTTGCAGTGGAATAGGTTAAAGCTA
66 T-GGAATAGACTGAATATAGCAAATCTTATCTCT-CTGAAGTTGCAGTGGAATAGGTTAAAGCTA
** * * * * *
14776798 CGAGTTACAAGTCCTATACCTCTGAAGTCGCAGTGGGTCGGATCAAATCTATCATGGTGAATTTT
129 CGAGTTACAAGTCCTATACCTCTGAAGTCGCAGCAGATCAGATCAAATCTACCATGATGAATCTT
* * * * *
14776863 ATCTCCCTAAAATTTCA-TGGAGTAGAT-GTAGGTCATTAAC
194 ATCTCCCTAAAATTGCAGTGGAATAGATCG-AAGCCACTAAC
* * * * * * * *
14776903 CTTATCTTCCTGAAGTTACAATGGAGCAGGTTGAAGATGCAAGTCTTATCTCCCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTACAATAGAGCAGGTTGAAGATACAAGTCTTAGCCCCCCGAAATTACAG
14776968 TGGAATAGACTGAATATAGCAAATCTTATCTCTCTGAAGTTG
66 TGGAATAGACTGAATATAGCAAATCTTATCTCTCTGAAGTTG
14777010 TAGTAGAGTA
Statistics
Matches: 275, Mismatches: 52, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
226 2 0.01
227 99 0.36
228 2 0.01
230 1 0.00
232 5 0.02
233 106 0.39
234 60 0.22
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (234 bp):
CTTATCTCCCTGAAGTTACAATAGAGCAGGTTGAAGATACAAGTCTTAGCCCCCCGAAATTACAG
TGGAATAGACTGAATATAGCAAATCTTATCTCTCTGAAGTTGCAGTGGAATAGGTTAAAGCTACG
AGTTACAAGTCCTATACCTCTGAAGTCGCAGCAGATCAGATCAAATCTACCATGATGAATCTTAT
CTCCCTAAAATTGCAGTGGAATAGATCGAAGCCACTAAC
Found at i:14777475 original size:38 final size:38
Alignment explanation
Indices: 14777427--14777505 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
14777417 GGATACCCTT
14777427 CTTTCCATTTTCTTTTCTCTGCTAGGGTTAGGAGAACC
1 CTTTCCATTTTCTTTTCTCTGCTAGGGTTAGGAGAACC
*
14777465 CTTTCTATTTTCTTTTCTCTGCTAGGGTTAGGAGAACC
1 CTTTCCATTTTCTTTTCTCTGCTAGGGTTAGGAGAACC
14777503 CTT
1 CTT
14777506 CATTGCCGCC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.15, C:0.23, G:0.18, T:0.44
Consensus pattern (38 bp):
CTTTCCATTTTCTTTTCTCTGCTAGGGTTAGGAGAACC
Found at i:14778263 original size:19 final size:20
Alignment explanation
Indices: 14778225--14778265 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
14778215 GGACTTTTTA
*
14778225 TTATTTGGGCTTTTAATTGT
1 TTATTTGGGCATTTAATTGT
*
14778245 TTATTTGGG-ATTTAGTTGT
1 TTATTTGGGCATTTAATTGT
14778264 TT
1 TT
14778266 GGGCCAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.15, C:0.02, G:0.22, T:0.61
Consensus pattern (20 bp):
TTATTTGGGCATTTAATTGT
Found at i:14778596 original size:45 final size:44
Alignment explanation
Indices: 14778537--14778703 Score: 160
Period size: 44 Copynumber: 3.8 Consensus size: 44
14778527 GGTTTGTGGC
* * *
14778537 TTCAATCTGTTCTACTGCAACTTCAGAGAGATAAGATTTGCTATA
1 TTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGACTTG-TATA
* *
14778582 TTCAATCTGCTCTACTGCAACTTAAGGGAGATAAGACTTGTATC
1 TTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGACTTGTATA
* * * * *
14778626 TTCAACCTGCTCCATTGTAACTTCAGGGAGATAAGGCTAATGGT-T-
1 TTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGACT--T-GTATA
* * *
14778671 TTC-ATCTACTCCACTGCAATTTCAGGGAGATAA
1 TTCAATCTGCTCTACTGCAACTTCAGGGAGATAA
14778704 AATTTGCCAT
Statistics
Matches: 103, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
44 60 0.58
45 39 0.38
46 2 0.02
47 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32
Consensus pattern (44 bp):
TTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGACTTGTATA
Found at i:14779450 original size:11 final size:11
Alignment explanation
Indices: 14779436--14779480 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
14779426 AGATAAATAT
14779436 TATTTTATTAA
1 TATTTTATTAA
*
14779447 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
14779460 TATTTTATTAT
1 TATTTTATTAA
14779471 TATTTTATTA
1 TATTTTATTA
14779481 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:14781515 original size:59 final size:54
Alignment explanation
Indices: 14781442--14781576 Score: 155
Period size: 54 Copynumber: 2.4 Consensus size: 54
14781432 TAGGGTCTGA
* * * *
14781442 ATTTAGCCTGGACTGGTAATTCAGAT-CTACGCTCATTAGAGTAATTATCGTTGCAGGGG
1 ATTTAGCCTGGACTGGTAATCCAGATAATACGCT-A-T-GAGT--TTAT-ATTACAGGGG
* *
14781501 ATTTAGCCTGGACTGGTAATCCCGATAATACTCTATGAGTTTATATTACAGGGG
1 ATTTAGCCTGGACTGGTAATCCAGATAATACGCTATGAGTTTATATTACAGGGG
14781555 ATTTAGCCTGGACTGGTAATCC
1 ATTTAGCCTGGACTGGTAATCC
14781577 CACTGTAAGG
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
54 30 0.43
55 4 0.06
57 4 0.06
58 1 0.01
59 25 0.36
60 5 0.07
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.33
Consensus pattern (54 bp):
ATTTAGCCTGGACTGGTAATCCAGATAATACGCTATGAGTTTATATTACAGGGG
Found at i:14781727 original size:46 final size:46
Alignment explanation
Indices: 14781660--14782144 Score: 799
Period size: 46 Copynumber: 10.7 Consensus size: 46
14781650 TGGCAACCTG
14781660 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
14781706 TGTGTAAGACCATGGTTGAAAGATGCCATGGCAACC-----TG---
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
14781744 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
14781790 TGTGTAAGATCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
14781836 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
14781882 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
14781928 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
14781974 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
14782020 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* * *
14782066 TGTGTAAGACCATGGTTGAAAAATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
*
14782112 TGAGTAAGACCATGGTTGAAAGATACCATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
14782145 TCACGTCGAA
Statistics
Matches: 416, Mismatches: 14, Indels: 18
0.93 0.03 0.04
Matches are distributed among these distances:
38 35 0.08
41 2 0.00
43 2 0.00
45 1 0.00
46 376 0.90
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.24
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:14785094 original size:11 final size:11
Alignment explanation
Indices: 14785080--14785124 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
14785070 AGGTAAATAT
14785080 TATTTTATTAA
1 TATTTTATTAA
*
14785091 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
14785104 TATTTTATTAT
1 TATTTTATTAA
14785115 TATTTTATTA
1 TATTTTATTA
14785125 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:14787369 original size:46 final size:46
Alignment explanation
Indices: 14787302--14787712 Score: 521
Period size: 46 Copynumber: 9.5 Consensus size: 46
14787292 TGGCAACCTG
14787302 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
14787348 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG---
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
14787386 TGTGTAAGGCCATGGTTGAAAGATACCATGGCAACC-----TG---
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
14787424 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG---
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
14787462 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
14787508 TGTGTAAGACCGTGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
14787554 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
14787600 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* ** * *
14787646 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
* *
14787692 TGAGTAAGACCATAGTTGAAA
1 TGTGTAAGACCATGGTTGAAA
14787713 AACACTATGG
Statistics
Matches: 341, Mismatches: 15, Indels: 18
0.91 0.04 0.05
Matches are distributed among these distances:
38 110 0.32
41 2 0.01
43 2 0.01
45 1 0.00
46 226 0.66
ACGTcount: A:0.36, C:0.16, G:0.26, T:0.23
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:14788558 original size:44 final size:44
Alignment explanation
Indices: 14788449--14789223 Score: 410
Period size: 44 Copynumber: 16.7 Consensus size: 44
14788439 TTATAGCTTT
* * * * * * *
14788449 AATCTGCTCTACTGCAACTTTAGAGAGATAAGATTTGCCATCTTG
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TAACTTC
* *
14788494 AGTCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTC
* * * * ***
14788538 AACCTGCTCCATTGCAACTTCAGGGAGATAAGGCTGGTGGTTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTC
* * * * * *
14788582 AATCTGCTTCGCTGCAACTTTAGGAAAATAAGA-TTCGCCGT-A-TTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTT----GTAACTTC
* ** * *
14788627 GATCTGCTCCGTTGCAACTTCAGGGAGATAAGACTAGTGACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTC
* * * *
14788671 AAGCTACTCCACTGCAACTTCAGGGAGATAACATTTGTAATCTGTAGC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAA-CT-T--C
* * * * * * * *
14788719 TTTGATTTACTCTACTGTAACTTCAGAGAGATAAGA-TCTGCT-ATTTGT
1 ---AATCTGCTCCACTGCAACTTCAGGGAGATAAGACT-TG-TAACTT-C
* * * * *
14788767 AGTCTGCCCCACTGCAACTTCAGGGGGATAAGACTAGTAAATTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTC
* * * * *
14788811 AACCTACTCTAGTGCAACTTCAGGGAGATAAGGTTTGGTATTTGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAA------G-ACTTGTAACTTC
* * * *
14788862 AGTTTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAACTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAA-------GACTTGTAACTTC
*
14788913 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTC
* * *
14788957 AACCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTAATCTGTAGC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAA-CT-T--C
* * * * * * * * *
14789005 TTTGATCTACTCTACTGTAACTTTAGAGAGATAAGATCTTCT-ATTTGT
1 ---AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTTGTAACTT-C
* * * *
14789053 AGTCTGCCCCACTGCAACTTCAGGGAGATAAGACTAGTGACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTC
* *
14789097 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAA-------GACTTGTAACTTC
* *
14789148 AATCTGCTCCACTGTAACTTCAGGGAGATAAGACTAGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTC
* * *
14789192 AACCTACTCCATTGCAACTTCAGGGAGATAAG
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAG
14789224 GTTTGTGGAT
Statistics
Matches: 558, Mismatches: 130, Indels: 85
0.72 0.17 0.11
Matches are distributed among these distances:
42 2 0.00
43 2 0.00
44 240 0.43
45 120 0.22
46 4 0.01
47 2 0.00
48 4 0.01
49 2 0.00
50 4 0.01
51 170 0.30
52 8 0.01
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.30
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTC
Found at i:14788753 original size:95 final size:96
Alignment explanation
Indices: 14788442--14789085 Score: 363
Period size: 95 Copynumber: 6.9 Consensus size: 96
14788432 ATAGGATTTA
* * * * * * * *
14788442 TAGCTTTAATCTGCTCTACTGCAACTTTAGAGAGATAAGATTTGCCATCTT-GAGTCTACTCCAC
1 TAGCTTTAATCTACTCTACTGCAACTTCAGGGAGATAAGACTAG-TAACTTCAAGTCTACTCCAC
*
14788506 TGCAACTTCAGGGAGATAAGACTTGTAA-CT-
65 TGCAACTTCAGGGAGATAAGATTTGTAATCTG
* * * * * * *** * * *
14788536 T--C---AACCTGCTCCATTGCAACTTCAGGGAGATAAGGCTGGTGGTTTCAA-TCTGCTTCGCT
1 TAGCTTTAATCTACTCTACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAAGTCTACTCCACT
* * * * *
14788595 GCAACTTTAGGAAAATAAGATTCG----CCG
66 GCAACTTCAGGGAGATAAGATTTGTAATCTG
* * *** *
14788622 TA--TTTGATCTGCTCCGTTGCAACTTCAGGGAGATAAGACTAGTGACTTCAAG-CTACTCCACT
1 TAGCTTTAATCTACTCTACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAAGTCTACTCCACT
*
14788684 GCAACTTCAGGGAGATAACATTTGTAATCTG
66 GCAACTTCAGGGAGATAAGATTTGTAATCTG
* * * * * ** * *
14788715 TAGCTTTGATTTACTCTACTGTAACTTCAGAGAGATAAGATCT-GCT-ATTTGTAGTCTGCCCCA
1 TAGCTTTAATCTACTCTACTGCAACTTCAGGGAGATAAGA-CTAG-TAACTTCAAGTCTACTCCA
* * *
14788778 CTGCAACTTCAGGGGGATAAGACTAGTAA----
64 CTGCAACTTCAGGGAGATAAGATTTGTAATCTG
* * * * * * *
14788807 -A--TTCAACCTACTCTAGTGCAACTTCAGGGAGATAAGGTTTGGTATTTGTAACTTC-AGTTTG
1 TAGCTTTAATCTACTCTACTGCAACTTCAGGGAGATAA------G-ACTAGTAACTTCAAGTCTA
* * *
14788868 CTCCACTGCAACTTCAGGGAGATAAGGTTTGTGATTTG
59 CTCCACTGCAACTTCAGGGAGATAAGATTTGTAATCTG
* * * *
14788906 TAACTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAA-CCTACTCCACT
1 TAGCTTTAATCTACTCTACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAAGTCTACTCCACT
14788970 GCAACTTCAGGGAGATAAGATTTGTAATCTG
66 GCAACTTCAGGGAGATAAGATTTGTAATCTG
* * * * ** * ** * *
14789001 TAGCTTTGATCTACTCTACTGTAACTTTAGAGAGATAAGATCTTCT-ATTTGTAGTCTGCCCCAC
1 TAGCTTTAATCTACTCTACTGCAACTTCAGGGAGATAAGA-CTAGTAACTTCAAGTCTACTCCAC
14789065 TGCAACTTCAGGGAGATAAGA
65 TGCAACTTCAGGGAGATAAGA
14789086 CTAGTGACTT
Statistics
Matches: 416, Mismatches: 99, Indels: 68
0.71 0.17 0.12
Matches are distributed among these distances:
85 1 0.00
86 1 0.00
88 29 0.07
89 122 0.29
91 1 0.00
92 1 0.00
93 4 0.01
94 1 0.00
95 154 0.37
96 72 0.17
100 1 0.00
102 29 0.07
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (96 bp):
TAGCTTTAATCTACTCTACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAAGTCTACTCCACT
GCAACTTCAGGGAGATAAGATTTGTAATCTG
Found at i:14788797 original size:140 final size:140
Alignment explanation
Indices: 14788445--14789180 Score: 676
Period size: 140 Copynumber: 5.3 Consensus size: 140
14788435 GGATTTATAG
* * * * * * * * *
14788445 CTTTAATCTGCTCTACTGCAACTTTAGAGAGATAAGATTTGCCATCTTG-AGTCTACTCCACTGC
1 CTTTGATCTACTCCACTGTAACTTCAGAGAGATAAGATCTGCTAT-TTGTAGTCTGCCCCACTGC
* * * ** *
14788509 AACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCATTGCAACTTCAGGGAGATAAGGCTG
65 AACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGATTT
**
14788574 GTGGT-T-TCAA
130 GTAATCTGT-AA
* * * * * * **
14788584 -TCTG--CT--T-CGCTGCAACTTTAG-GAAAATAAGAT-TCGCCGTATTTG-A-TCTGCTCCGT
1 CTTTGATCTACTCCACTGTAACTTCAGAG-AGATAAGATCT-G-C-TATTTGTAGTCTGCCCCAC
* * *
14788639 TGCAACTTCAGGGAGATAAGACTAGTGACTTCAAGCTACTCCACTGCAACTTCAGGGAGATAACA
62 TGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGA
*
14788704 TTTGTAATCTGTAG
127 TTTGTAATCTGTAA
* *
14788718 CTTTGATTTACTCTACTGTAACTTCAGAGAGATAAGATCTGCTATTTGTAGTCTGCCCCACTGCA
1 CTTTGATCTACTCCACTGTAACTTCAGAGAGATAAGATCTGCTATTTGTAGTCTGCCCCACTGCA
* * * * *
14788783 ACTTCAGGGGGATAAGACTAGTAAATTCAACCTACTCTAGTGCAACTTCAGGGAGATAAGGTTTG
66 ACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGATTT-
*
14788848 GT-ATTTGTAA
130 GTAATCTGTAA
* * * * * * * * *
14788858 C-TTCAGTTTGCTCCACTGCAACTTCAGGGAGATAAGGTTTG-TGATTTGTAACTTTAATCTGCT
1 CTTTGA-TCTACTCCACTGTAACTTCAGAGAGATAAGATCTGCT-ATTTG------TAGTCTGCC
14788921 CCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGAT
58 CCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGAT
*
14788986 AAGATTTGTAATCTGTAG
123 AAGATTTGTAATCTGTAA
* * *
14789004 CTTTGATCTACTCTACTGTAACTTTAGAGAGATAAGATCTTCTATTTGTAGTCTGCCCCACTGCA
1 CTTTGATCTACTCCACTGTAACTTCAGAGAGATAAGATCTGCTATTTGTAGTCTGCCCCACTGCA
* ** * *
14789069 ACTTCAGGGAGATAAGACTAGTGACTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTG
66 ACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGATTTG
* *
14789134 TGATTTGTAA
131 TAATCTGTAA
** * *
14789144 CTTCAATCTGCTCCACTGTAACTTCAGGGAGATAAGA
1 CTTTGATCTACTCCACTGTAACTTCAGAGAGATAAGA
14789181 CTAGTAACTT
Statistics
Matches: 486, Mismatches: 83, Indels: 55
0.78 0.13 0.09
Matches are distributed among these distances:
132 2 0.00
133 90 0.19
134 8 0.02
135 6 0.01
136 2 0.00
137 1 0.00
138 8 0.02
139 7 0.01
140 240 0.49
141 4 0.01
145 2 0.00
146 112 0.23
147 4 0.01
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (140 bp):
CTTTGATCTACTCCACTGTAACTTCAGAGAGATAAGATCTGCTATTTGTAGTCTGCCCCACTGCA
ACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGATTTG
TAATCTGTAA
Found at i:14788905 original size:51 final size:51
Alignment explanation
Indices: 14788823--14789179 Score: 292
Period size: 51 Copynumber: 7.4 Consensus size: 51
14788813 CCTACTCTAG
*
14788823 TGCAACTTCAGGGAGATAAGGTTTG-GTATTTGTAACTTCAGTTTGCTCCAC
1 TGCAACTTCAGGGAGATAAGGTTTGTG-ATTTGTAACTTCAGTCTGCTCCAC
* *
14788874 TGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAACTTTAATCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAACTTCAGTCTGCTCCAC
* * ** *
14788925 TGCAACTTCAGGGAGATAA-------GACTAGTAACTTCAACCTACTCCAC
1 TGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAACTTCAGTCTGCTCCAC
* * * * * * *
14788969 TGCAACTTCAGGGAGATAAGATTTGTAATCTGTAGCTT-TGATCTACTCTAC
1 TGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAACTTCAG-TCTGCTCCAC
* * * * * *
14789020 TGTAACTTTAGAGAGATAAGATCTTCT-ATTTG-----T-AGTCTGCCCCAC
1 TGCAACTTCAGGGAGATAAGGT-TTGTGATTTGTAACTTCAGTCTGCTCCAC
* * *
14789065 TGCAACTTCAGGGAGATAA-------GACTAGTGACTTCAGTCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAACTTCAGTCTGCTCCAC
*
14789109 TGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAACTTCAATCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAACTTCAGTCTGCTCCAC
*
14789160 TGTAACTTCAGGGAGATAAG
1 TGCAACTTCAGGGAGATAAG
14789180 ACTAGTAACT
Statistics
Matches: 245, Mismatches: 37, Indels: 48
0.74 0.11 0.15
Matches are distributed among these distances:
38 3 0.01
43 1 0.00
44 69 0.28
45 23 0.09
46 2 0.01
51 143 0.58
52 4 0.02
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (51 bp):
TGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAACTTCAGTCTGCTCCAC
Found at i:14789142 original size:286 final size:280
Alignment explanation
Indices: 14788442--14789179 Score: 981
Period size: 286 Copynumber: 2.6 Consensus size: 280
14788432 ATAGGATTTA
* * * * * *
14788442 TAGCTTTAATCTGCTCTACTGCAACTTTAGAGAGATAAGAT-TTGCCATCTTG-AGTCTACTCCA
1 TAGCTTTGATCTACTCTACTGTAACTTTAGAGAGATAAGATCTT-CTAT-TTGTAGTCTGCCCCA
* *
14788505 CTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCATTGCAACTTCAGGGAGATAAG
64 CTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAG
* * * * * * * *
14788570 G-CTGG--TGGT---TTCAATCTGCTTCGCTGCAACTTTAGGAAAATAA-GATTCGCCGTATTTG
129 GTTTGGATTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGATTCGCCGTATTTA
** * *
14788628 ATCTGCTCCGTTGCAACTTCAGGGAGATAAGACTAGTGACTTCAAGCTACTCCACTGCAACTTCA
194 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCA
14788693 GGGAGATAACATTTGTAATCTG
259 GGGAGATAACATTTGTAATCTG
* * *
14788715 TAGCTTTGATTTACTCTACTGTAACTTCAGAGAGATAAGATCTGCTATTTGTAGTCTGCCCCACT
1 TAGCTTTGATCTACTCTACTGTAACTTTAGAGAGATAAGATCTTCTATTTGTAGTCTGCCCCACT
* * * * *
14788780 GCAACTTCAGGGGGATAAGACTAGTAAATTCAACCTACTCTAGTGCAACTTCAGGGAGATAAGGT
66 GCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGT
* * * * **
14788845 TTGGTATTTGTAACTTCAGTTTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAAC
131 TTGG-ATTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGATT-CG--CCGT-A-
14788910 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAAC
190 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAAC
*
14788975 TTCAGGGAGATAAGATTTGTAATCTG
255 TTCAGGGAGATAACATTTGTAATCTG
14789001 TAGCTTTGATCTACTCTACTGTAACTTTAGAGAGATAAGATCTTCTATTTGTAGTCTGCCCCACT
1 TAGCTTTGATCTACTCTACTGTAACTTTAGAGAGATAAGATCTTCTATTTGTAGTCTGCCCCACT
* **
14789066 GCAACTTCAGGGAGATAAGACTAGTGACTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGGT
66 GCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGT
*
14789131 TTGTGATTTGTAACTTCAATCTGCTCCACTGTAACTTCAGGGAGATAAG
131 TTG-GATTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
14789180 ACTAGTAACT
Statistics
Matches: 401, Mismatches: 48, Indels: 19
0.86 0.10 0.04
Matches are distributed among these distances:
272 3 0.01
273 108 0.27
274 4 0.01
277 3 0.01
280 27 0.07
281 3 0.01
282 1 0.00
284 2 0.00
285 1 0.00
286 248 0.62
287 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (280 bp):
TAGCTTTGATCTACTCTACTGTAACTTTAGAGAGATAAGATCTTCTATTTGTAGTCTGCCCCACT
GCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGT
TTGGATTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGATTCGCCGTATTTAAT
CTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGG
GAGATAACATTTGTAATCTG
Found at i:14789176 original size:95 final size:95
Alignment explanation
Indices: 14788769--14789230 Score: 369
Period size: 95 Copynumber: 4.9 Consensus size: 95
14788759 CTATTTGTAG
* * * * * * *
14788769 TCTGCCCCACTGCAACTTCAGGGGGATAAGACTAGTAAATTCAACCTACTCTAGTGCAACTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAATCTGCTCCACTGCAACTTCAG
*
14788834 GGAGATAAGGTTTG-GTATTTGTAACTTCAG
66 GGAGATAAGGTTTGTG-ATTTGTAACTTCAA
* * * *
14788864 TTTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAACTTTAATCTGCTCCACTGCA
1 TCTGCTCCACTGCAACTTCAGGGAGATAA-------GACTAGTAACTTCAATCTGCTCCACTGCA
* *
14788929 ACTTCAGGGAGATAA-------GACTAGTAACTTCAA
59 ACTTCAGGGAGATAAGGTTTGTGATTTGTAACTTCAA
* * * * * * * *
14788959 CCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTAATCTGTAGCTTTGATCTACTCTACTGTA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAA-CT-T--C---AATCTGCTCCACTGCA
* * * * *
14789024 ACTTTAGAGAGATAAGATCTTCT-ATTTG-----T-AG
59 ACTTCAGGGAGATAAGGT-TTGTGATTTGTAACTTCAA
* * *
14789055 TCTGCCCCACTGCAACTTCAGGGAGATAAGACTAGTGACTTCAGTCTGCTCCACTGCAACTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAATCTGCTCCACTGCAACTTCAG
14789120 GGAGATAAGGTTTGTGATTTGTAACTTCAA
66 GGAGATAAGGTTTGTGATTTGTAACTTCAA
* * * *
14789150 TCTGCTCCACTGTAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCATTGCAACTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAATCTGCTCCACTGCAACTTCAG
14789215 GGAGATAAGGTTTGTG
66 GGAGATAAGGTTTGTG
14789231 GATTCACCGA
Statistics
Matches: 288, Mismatches: 50, Indels: 58
0.73 0.13 0.15
Matches are distributed among these distances:
88 12 0.04
89 33 0.11
90 1 0.00
92 1 0.00
94 2 0.01
95 165 0.57
96 34 0.12
97 1 0.00
102 39 0.14
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (95 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAATCTGCTCCACTGCAACTTCAG
GGAGATAAGGTTTGTGATTTGTAACTTCAA
Found at i:14790562 original size:25 final size:26
Alignment explanation
Indices: 14790507--14790563 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 26
14790497 TTTATTATTT
*
14790507 TTAAAATTGACTTATATATTATTTATT
1 TTAAAATTGA-TTATATATTATTTATG
*
14790534 TTAAAATTG-TTTTATA-TATCTTATG
1 TTAAAATTGATTATATATTAT-TTATG
14790559 TTAAA
1 TTAAA
14790564 CTCTTTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 3 0.11
25 15 0.56
27 9 0.33
ACGTcount: A:0.37, C:0.04, G:0.05, T:0.54
Consensus pattern (26 bp):
TTAAAATTGATTATATATTATTTATG
Found at i:14790752 original size:52 final size:49
Alignment explanation
Indices: 14790696--14790793 Score: 115
Period size: 52 Copynumber: 1.9 Consensus size: 49
14790686 TTTTTAATTT
* * *
14790696 GCTTTGTGTAATATAGATTTTAAAATTCTTTTACATTATTTATTTTAAACTC
1 GCTTTATGTAATATACATTTT-AAATTCTTTT--ATTATTTACTTTAAACTC
* * *
14790748 GCTTTATGTATTATTCATTTTAAATTGTTTTATTATTTACTTTAAA
1 GCTTTATGTAATATACATTTTAAATTCTTTTATTATTTACTTTAAA
14790794 ATTTTATATA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
49 14 0.35
51 9 0.22
52 17 0.43
ACGTcount: A:0.30, C:0.08, G:0.07, T:0.55
Consensus pattern (49 bp):
GCTTTATGTAATATACATTTTAAATTCTTTTATTATTTACTTTAAACTC
Found at i:14792564 original size:53 final size:53
Alignment explanation
Indices: 14792501--14792607 Score: 187
Period size: 53 Copynumber: 2.0 Consensus size: 53
14792491 AAATATCCAT
* * *
14792501 TAATTTTGCCATTGAATCAATTTGATTTAAAATTTTAATCAGATTTAGTGGAA
1 TAATTCTGCCATTAAATCAATTTGATTTAAAATTTTAATCAAATTTAGTGGAA
14792554 TAATTCTGCCATTAAATCAATTTGATTTAAAATTTTAATCAAATTTAGTGGAA
1 TAATTCTGCCATTAAATCAATTTGATTTAAAATTTTAATCAAATTTAGTGGAA
14792607 T
1 T
14792608 CAAATCAATA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.37, C:0.08, G:0.11, T:0.43
Consensus pattern (53 bp):
TAATTCTGCCATTAAATCAATTTGATTTAAAATTTTAATCAAATTTAGTGGAA
Found at i:14797572 original size:131 final size:132
Alignment explanation
Indices: 14797338--14797602 Score: 514
Period size: 131 Copynumber: 2.0 Consensus size: 132
14797328 CTCAAATCTA
*
14797338 ACTGATTTTTTAAGATAAACTTAATTTTTTCTCTAAACCCATTTGATTACTTTCAAAAATATTCA
1 ACTGATTTTTTAAAATAAACTTAATTTTTTCTCTAAACCCATTTGATTACTTTCAAAAATATTCA
14797403 ATTTTTAATTTGACTGACTTTTTAAAATAAA-TTTTTTTTCCCTAAACTCATTTGAATATTTTCT
66 ATTTTTAATTTGACTGACTTTTTAAAATAAATTTTTTTTTCCCTAAACTCATTTGAATATTTTCT
14797467 CC
131 CC
14797469 ACTGATTTTTTAAAATAAACTTAATTTTTTCTCTAAACCCATTTGATTACTTTCAAAAATATTCA
1 ACTGATTTTTTAAAATAAACTTAATTTTTTCTCTAAACCCATTTGATTACTTTCAAAAATATTCA
14797534 ATTTTTAATTTGACTGACTTTTTAAAATAAATTTTTTTTTCCCTAAACTCATTTGAATATTTTCT
66 ATTTTTAATTTGACTGACTTTTTAAAATAAATTTTTTTTTCCCTAAACTCATTTGAATATTTTCT
14797599 CC
131 CC
14797601 AC
1 AC
14797603 CTTTATTTGA
Statistics
Matches: 132, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
131 95 0.72
132 37 0.28
ACGTcount: A:0.32, C:0.15, G:0.04, T:0.48
Consensus pattern (132 bp):
ACTGATTTTTTAAAATAAACTTAATTTTTTCTCTAAACCCATTTGATTACTTTCAAAAATATTCA
ATTTTTAATTTGACTGACTTTTTAAAATAAATTTTTTTTTCCCTAAACTCATTTGAATATTTTCT
CC
Found at i:14803366 original size:12 final size:12
Alignment explanation
Indices: 14803345--14803374 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
14803335 CTACACCTGT
14803345 GTGTGCCTGGCC
1 GTGTGCCTGGCC
*
14803357 GTGTGGCTGGCC
1 GTGTGCCTGGCC
14803369 GTGTGC
1 GTGTGC
14803375 GAGACACGGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.00, C:0.27, G:0.47, T:0.27
Consensus pattern (12 bp):
GTGTGCCTGGCC
Found at i:14803592 original size:18 final size:18
Alignment explanation
Indices: 14803565--14803607 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
14803555 AATCTGGGCT
14803565 TGTGGG-CCACATAGG-CA
1 TGTGGGCCCACA-AGGACA
*
14803582 TGTGGGCCCACACGGACA
1 TGTGGGCCCACAAGGACA
14803600 TGTGGGCC
1 TGTGGGCC
14803608 TATATTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.19, C:0.28, G:0.37, T:0.16
Consensus pattern (18 bp):
TGTGGGCCCACAAGGACA
Found at i:14806223 original size:6 final size:6
Alignment explanation
Indices: 14806212--14806259 Score: 69
Period size: 6 Copynumber: 7.5 Consensus size: 6
14806202 ATAGATAAAT
14806212 AAAAAG AAAAAG AAAAATAAG AAAAAG AAAAAG AAAAAG AAAAAG AAA
1 AAAAAG AAAAAG --AAA-AAG AAAAAG AAAAAG AAAAAG AAAAAG AAA
14806260 GAAAATTTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
6 30 0.77
7 3 0.08
8 3 0.08
9 3 0.08
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (6 bp):
AAAAAG
Found at i:14806250 original size:27 final size:28
Alignment explanation
Indices: 14806212--14806264 Score: 90
Period size: 27 Copynumber: 1.9 Consensus size: 28
14806202 ATAGATAAAT
*
14806212 AAAAAGAAAAAGAAAAA-TAAGAAAAAG
1 AAAAAGAAAAAGAAAAAGAAAGAAAAAG
14806239 AAAAAGAAAAAGAAAAAGAAAGAAAA
1 AAAAAGAAAAAGAAAAAGAAAGAAAA
14806265 TTTTTTACCT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 17 0.71
28 7 0.29
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (28 bp):
AAAAAGAAAAAGAAAAAGAAAGAAAAAG
Found at i:14807057 original size:17 final size:18
Alignment explanation
Indices: 14807035--14807068 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
14807025 ATTATTAATA
14807035 ATTATTTTTTAA-ACATT
1 ATTATTTTTTAATACATT
14807052 ATTATTTTTTAATACAT
1 ATTATTTTTTAATACAT
14807069 GCATATGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTATTTTTTAATACATT
Found at i:14807644 original size:3 final size:3
Alignment explanation
Indices: 14807636--14807689 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
14807626 TACATACATC
14807636 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14807684 TTA TTA
1 TTA TTA
14807690 GTAGTAGTAG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:14807694 original size:3 final size:3
Alignment explanation
Indices: 14807688--14807716 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
14807678 TTATTATTAT
14807688 TAG TAG TAG TAG TAG TAG TAG TAG TAG TA
1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TA
14807717 TATGTTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
TAG
Found at i:14807846 original size:17 final size:15
Alignment explanation
Indices: 14807826--14807884 Score: 72
Period size: 15 Copynumber: 4.1 Consensus size: 15
14807816 ATGTTCATTT
*
14807826 TATATATATTATGTG
1 TATATATATTATGTA
14807841 TATATATATTATGTA
1 TATATATATTATGTA
14807856 TATATATA-TAT-T-
1 TATATATATTATGTA
14807868 TAGTAT-TATTATGTA
1 TA-TATATATTATGTA
14807883 TA
1 TA
14807885 CACTTTTCAT
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
12 4 0.10
13 7 0.18
14 4 0.10
15 24 0.62
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.54
Consensus pattern (15 bp):
TATATATATTATGTA
Found at i:14811275 original size:42 final size:46
Alignment explanation
Indices: 14811212--14811423 Score: 170
Period size: 49 Copynumber: 4.6 Consensus size: 46
14811202 CTTCGTTTTC
** *
14811212 TCGATGCCATAGTTCAACTATGGTCTTACAC-AT-C-T-TCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACAATACATATCACAT-A
14811255 T-GATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC--AAT-ACATATCACATA
* * *
14811303 TCGATGCCATAGCCCAGCTATGGTCTTACATGAATCACATATCTCA-C
1 TCGATGCCATAGCCCAGCTATGGTCTTACA-CAAT-ACATATCACATA
* * * * *
14811350 T-GATGCCATATCCCAGATATGGTCTTATACAGTAGCATAT-ATCACA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACAATA-CATATCA-CATA
* * *
14811396 CCGATGCCATATCCCAGATATGGTCTTA
1 TCGATGCCATAGCCCAGCTATGGTCTTA
14811424 TACGAAAATC
Statistics
Matches: 142, Mismatches: 14, Indels: 22
0.80 0.08 0.12
Matches are distributed among these distances:
42 26 0.18
43 1 0.01
44 1 0.01
45 11 0.08
46 25 0.18
47 28 0.20
48 16 0.11
49 34 0.24
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (46 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACAATACATATCACATA
Found at i:14811313 original size:49 final size:47
Alignment explanation
Indices: 14811253--14811423 Score: 193
Period size: 47 Copynumber: 3.6 Consensus size: 47
14811243 ATCTTCACAT
*
14811253 AATGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCAC
1 AATGATGCCATAGCCCAGATATGGTCTTACACGTAATCACATATCAC
* * *
14811300 ATATCGATGCCATAGCCCAGCTATGGTCTTACATG-AATCACATATCTC
1 A-AT-GATGCCATAGCCCAGATATGGTCTTACACGTAATCACATATCAC
* * * * *
14811348 ACTGATGCCATATCCCAGATATGGTCTTATACAGT-AGCATATATCAC
1 AATGATGCCATAGCCCAGATATGGTCTTACAC-GTAATCACATATCAC
** *
14811395 ACCGATGCCATATCCCAGATATGGTCTTA
1 AATGATGCCATAGCCCAGATATGGTCTTA
14811424 TACGAAAATC
Statistics
Matches: 109, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
46 25 0.23
47 40 0.37
48 15 0.14
49 29 0.27
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (47 bp):
AATGATGCCATAGCCCAGATATGGTCTTACACGTAATCACATATCAC
Found at i:14811435 original size:95 final size:94
Alignment explanation
Indices: 14811255--14811429 Score: 228
Period size: 95 Copynumber: 1.9 Consensus size: 94
14811245 CTTCACATAA
* * *
14811255 TGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATATCGATGCCATAGCCCAG
1 TGATGCCATAGCCCAGATATGGTCTTACACGTAAGCACATATCACA-ACCGATGCCATAGCCCAG
* *
14811320 CTATGGTCTTACATGAATCACATATCTCAC
65 ATATGGTCTTACACGAATCACATATCTCAC
* * * *
14811350 TGATGCCATATCCCAGATATGGTCTTATACAGT-AGCATATATCAC-ACCGATGCCATATCCCAG
1 TGATGCCATAGCCCAGATATGGTCTTACAC-GTAAGCACATATCACAACCGATGCCATAGCCCAG
*
14811413 ATATGGTCTTATACGAA
65 ATATGGTCTTACACGAA
14811430 AATCACTTGT
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
93 30 0.43
95 37 0.54
96 2 0.03
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (94 bp):
TGATGCCATAGCCCAGATATGGTCTTACACGTAAGCACATATCACAACCGATGCCATAGCCCAGA
TATGGTCTTACACGAATCACATATCTCAC
Found at i:14811487 original size:31 final size:31
Alignment explanation
Indices: 14811452--14811693 Score: 376
Period size: 31 Copynumber: 7.8 Consensus size: 31
14811442 CTTGTCACTT
*
14811452 GTAGCCGGAGCTACCACTATTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
*
14811483 GTAGCCGGAGCTACCACTATTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
14811514 GTAGCCAGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* * *
14811545 GTAACCGAAGATACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
14811576 GTAGCAGCAGCTACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
14811607 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
14811638 GTAGCAGGAGCTACCGCTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
*
14811669 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGGAGCTACCACTTTTCACT
14811694 TTTCATTTGT
Statistics
Matches: 192, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 192 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (31 bp):
GTAGCCGGAGCTACCACTTTTCACTGATCAG
Found at i:14815085 original size:22 final size:22
Alignment explanation
Indices: 14815060--14815115 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
14815050 ATTCATGACT
*
14815060 AACATTCATTCGTCATTTATTC
1 AACATTCATTCGTCATTCATTC
*
14815082 AACATTCATTTGTCATTCATTC
1 AACATTCATTCGTCATTCATTC
*
14815104 ATTCATTCATTC
1 A-ACATTCATTC
14815116 ATTGTATGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 21 0.72
23 8 0.28
ACGTcount: A:0.27, C:0.23, G:0.04, T:0.46
Consensus pattern (22 bp):
AACATTCATTCGTCATTCATTC
Found at i:14815101 original size:4 final size:4
Alignment explanation
Indices: 14815094--14815118 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
14815084 CATTCATTTG
14815094 TCAT TCAT TCAT TCAT TCAT TCAT T
1 TCAT TCAT TCAT TCAT TCAT TCAT T
14815119 GTATGTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (4 bp):
TCAT
Found at i:14818637 original size:18 final size:18
Alignment explanation
Indices: 14818604--14818654 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 18
14818594 AAGGCCAATC
*
14818604 TGGGCTTGTGGG-CCACA
1 TGGGCATGTGGGCCCACA
14818621 TGGGCATGTGGGCCCACA
1 TGGGCATGTGGGCCCACA
* *
14818639 CGGACATGTGGGCCCA
1 TGGGCATGTGGGCCCA
14818655 TATTTTTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
17 11 0.37
18 19 0.63
ACGTcount: A:0.16, C:0.27, G:0.39, T:0.18
Consensus pattern (18 bp):
TGGGCATGTGGGCCCACA
Found at i:14819768 original size:19 final size:20
Alignment explanation
Indices: 14819746--14819794 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
14819736 GGTAGGTTAA
*
14819746 AATAAAG-AAATAAATAATG
1 AATAAAGTAAATAAAAAATG
*
14819765 AAT-ATGTAAATAAAAAATG
1 AATAAAGTAAATAAAAAATG
*
14819784 AATAAAATAAA
1 AATAAAGTAAA
14819795 CGAATAAAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 2 0.08
19 17 0.71
20 5 0.21
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.22
Consensus pattern (20 bp):
AATAAAGTAAATAAAAAATG
Found at i:14822119 original size:31 final size:30
Alignment explanation
Indices: 14822074--14822141 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 30
14822064 ATCTAATTTT
*
14822074 TTTTGTCCAATTTGGAACCCAAACTTGACAA
1 TTTT-TCCAATTTGGAACACAAACTTGACAA
* * *
14822105 TTTTTCCTAATTTGGTACATAAACTTGACAC
1 TTTTTCC-AATTTGGAACACAAACTTGACAA
14822136 TTTTTC
1 TTTTTC
14822142 TTAAGTTGAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 3 0.09
31 29 0.91
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (30 bp):
TTTTTCCAATTTGGAACACAAACTTGACAA
Found at i:14822159 original size:31 final size:31
Alignment explanation
Indices: 14822094--14822161 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
14822084 TTTGGAACCC
* *
14822094 AAACTTGACAATTTTTCCTAATTTGGTACAT
1 AAACTTGACAATTTTTCCTAAGTTGATACAT
* * *
14822125 AAACTTGACACTTTTTCTTAAGTTGATACTT
1 AAACTTGACAATTTTTCCTAAGTTGATACAT
14822156 AAACTT
1 AAACTT
14822162 TTTCGGGATC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.32, C:0.16, G:0.09, T:0.43
Consensus pattern (31 bp):
AAACTTGACAATTTTTCCTAAGTTGATACAT
Found at i:14829141 original size:64 final size:64
Alignment explanation
Indices: 14829012--14829139 Score: 211
Period size: 65 Copynumber: 2.0 Consensus size: 64
14829002 ATAAAATCCT
*
14829012 GAAAACCGATTGTAAAGGGGTACCATTTTTGGAAAACATAGAAGAAAATATACAAAAAAAAAAA
1 GAAAACCGATTGTAAAGGGGTACCATTTTTGAAAAACATAGAAGAAAATATACAAAAAAAAAAA
* * *
14829076 GAAAATCGATTGTAAAGGGGTTCCCCTTTTTGAAAAACATAGAAGAAAATATACAAAAAAAAAA
1 GAAAACCGATTGTAAAGGGG-TACCATTTTTGAAAAACATAGAAGAAAATATACAAAAAAAAAA
14829140 GATTGAATAT
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
64 19 0.32
65 40 0.68
ACGTcount: A:0.53, C:0.10, G:0.16, T:0.20
Consensus pattern (64 bp):
GAAAACCGATTGTAAAGGGGTACCATTTTTGAAAAACATAGAAGAAAATATACAAAAAAAAAAA
Found at i:14830009 original size:4 final size:4
Alignment explanation
Indices: 14830000--14830037 Score: 58
Period size: 4 Copynumber: 9.5 Consensus size: 4
14829990 AATTGAGTCT
* *
14830000 TTTA TTTA TTTA TTTA TTTA CTTA TTTA CTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
14830038 AGTTTTTTAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:14846205 original size:19 final size:19
Alignment explanation
Indices: 14846181--14846224 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
14846171 CTAAATTGAT
* *
14846181 CTATTTAATAATAAAAGTA
1 CTATTTAAGAATAAAAGGA
14846200 CTATTTAAGAATAAAAGGA
1 CTATTTAAGAATAAAAGGA
14846219 CTATTT
1 CTATTT
14846225 TATATCAATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.48, C:0.07, G:0.09, T:0.36
Consensus pattern (19 bp):
CTATTTAAGAATAAAAGGA
Found at i:14851870 original size:29 final size:31
Alignment explanation
Indices: 14851814--14851872 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
14851804 TCATAGGGTG
14851814 ATAGCAATATGTATATATTAGCCTCTTTTTT
1 ATAGCAATATGTATATATTAGCCTCTTTTTT
*
14851845 ATAGCAATATGTATATGTTAGCCT-TTTT
1 ATAGCAATATGTATATATTAGCCTCTTTT
14851873 GAGCTCTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 4 0.15
31 23 0.85
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47
Consensus pattern (31 bp):
ATAGCAATATGTATATATTAGCCTCTTTTTT
Found at i:14855065 original size:9 final size:9
Alignment explanation
Indices: 14854994--14855193 Score: 57
Period size: 10 Copynumber: 20.4 Consensus size: 9
14854984 GACATGTGGC
14854994 AAAATTGATA
1 AAAATT-ATA
**
14855004 AAAAAAATA
1 AAAATTATA
*
14855013 AAAATCA-A
1 AAAATTATA
14855021 CAAAAGTTATA
1 -AAAA-TTATA
14855032 AAAATTACTA
1 AAAATTA-TA
**
14855042 AATTTTATTTA
1 AAAATTA--TA
14855053 AAAATTATA
1 AAAATTATA
*
14855062 AAAATCGTAAAA
1 AAAAT--T-ATA
14855074 AAAATTATAA
1 AAAATTAT-A
*
14855084 AAAATTGTA
1 AAAATTATA
**
14855093 AATCTTAT-
1 AAAATTATA
14855101 AAAATTCAT-
1 AAAATT-ATA
14855110 AAAATTCATA
1 AAAATT-ATA
14855120 AAAATATATA
1 AAAAT-TATA
* *
14855130 TAAATATAGA
1 AAAAT-TATA
*
14855140 AAAATAATTA
1 AAAATTA-TA
* *
14855150 TAAATTTTTA
1 -AAAATTATA
*
14855160 TAAAGTTAGTAA
1 -AAAATTA-T-A
14855172 GAAAATTATA
1 -AAAATTATA
14855182 AAAA-TATA
1 AAAATTATA
14855190 AAAA
1 AAAA
14855194 AATATAAAAT
Statistics
Matches: 144, Mismatches: 30, Indels: 34
0.69 0.14 0.16
Matches are distributed among these distances:
8 13 0.09
9 45 0.31
10 56 0.39
11 16 0.11
12 14 0.10
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.32
Consensus pattern (9 bp):
AAAATTATA
Found at i:14855458 original size:21 final size:22
Alignment explanation
Indices: 14855432--14855473 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
14855422 ACAGAGGCGA
*
14855432 AACAGAAGCA-AAACCATACAG
1 AACAGAAGCAGAAACAATACAG
*
14855453 AACAGAGGCAGAAACAATACA
1 AACAGAAGCAGAAACAATACA
14855474 AAGCAAGGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.57, C:0.21, G:0.17, T:0.05
Consensus pattern (22 bp):
AACAGAAGCAGAAACAATACAG
Found at i:14856917 original size:18 final size:18
Alignment explanation
Indices: 14856894--14856937 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
14856884 TTCTAATGCC
14856894 ATTATTATTATCACT-TCT
1 ATTATTATTATCACTAT-T
*
14856912 ATTATTATTATTACTATT
1 ATTATTATTATCACTATT
14856930 ATTATTAT
1 ATTATTAT
14856938 ATATTAGTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 23 0.96
19 1 0.04
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTATTATTATCACTATT
Found at i:14856935 original size:15 final size:14
Alignment explanation
Indices: 14856896--14856937 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
14856886 CTAATGCCAT
*
14856896 TATTATTATCACTTC
1 TATTATTATTA-TTC
14856911 TATTATTATTATTAC
1 TATTATTATTATT-C
14856926 TATTATTATTAT
1 TATTATTATTAT
14856938 ATATTAGTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 2 0.08
15 23 0.92
ACGTcount: A:0.31, C:0.10, G:0.00, T:0.60
Consensus pattern (14 bp):
TATTATTATTATTC
Found at i:14857527 original size:27 final size:28
Alignment explanation
Indices: 14857489--14857545 Score: 73
Period size: 27 Copynumber: 2.0 Consensus size: 28
14857479 TTCATTATTA
14857489 TACTATATCTATTATT-TATTAGCATTT
1 TACTATATCTATTATTATATTAGCATTT
*
14857516 TACTAT-TACTATTATTAGTATTAGCGTTT
1 TACTATAT-CTATTATTA-TATTAGCATTT
14857545 T
1 T
14857546 TTATCAATAC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 1 0.04
27 14 0.54
29 11 0.42
ACGTcount: A:0.28, C:0.11, G:0.07, T:0.54
Consensus pattern (28 bp):
TACTATATCTATTATTATATTAGCATTT
Found at i:14857665 original size:28 final size:27
Alignment explanation
Indices: 14857613--14857697 Score: 104
Period size: 28 Copynumber: 3.2 Consensus size: 27
14857603 ACATGTTGTG
*
14857613 TATATTCTTAATACTATATTGTGTATA
1 TATATTCTTAATACTATATTATGTATA
*
14857640 TATATTTTTAATAACTATATTATGTATA
1 TATATTCTTAAT-ACTATATTATGTATA
* *
14857668 TAT-TTCAT-ATA-TATATCATGTATA
1 TATATTCTTAATACTATATTATGTATA
14857692 TATATT
1 TATATT
14857698 ATATTTTATG
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
24 15 0.29
25 3 0.06
26 2 0.04
27 14 0.27
28 17 0.33
ACGTcount: A:0.36, C:0.06, G:0.05, T:0.53
Consensus pattern (27 bp):
TATATTCTTAATACTATATTATGTATA
Found at i:14857671 original size:11 final size:11
Alignment explanation
Indices: 14857655--14857714 Score: 61
Period size: 11 Copynumber: 5.5 Consensus size: 11
14857645 TTTTAATAAC
14857655 TATATTATGTA
1 TATATTATGTA
*
14857666 TATATTTCATATA
1 TATA-TT-ATGTA
*
14857679 TATATCATGTA
1 TATATTATGTA
14857690 TATA-TAT-TA
1 TATATTATGTA
*
14857699 TATTTTATGTA
1 TATATTATGTA
14857710 TATAT
1 TATAT
14857715 CTTCAATATC
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
9 5 0.13
10 5 0.13
11 18 0.46
12 3 0.08
13 8 0.21
ACGTcount: A:0.37, C:0.03, G:0.05, T:0.55
Consensus pattern (11 bp):
TATATTATGTA
Found at i:14857713 original size:13 final size:13
Alignment explanation
Indices: 14857613--14857714 Score: 50
Period size: 15 Copynumber: 7.4 Consensus size: 13
14857603 ACATGTTGTG
14857613 TATATTCTTA-ATA
1 TATATT-TTATATA
14857626 CTATATTGTGTATATA
1 -TATATT-T-TATATA
14857642 TAT-TTTTA-ATA
1 TATATTTTATATA
* *
14857653 -ACTATATTATGTA
1 TA-TATTTTATATA
14857666 TATATTTCATATATA
1 TATATTT--TATATA
*
14857681 TATCATGTATATATA
1 TAT-AT-TTTATATA
*
14857696 TTATATTTTATGTA
1 -TATATTTTATATA
14857710 TATAT
1 TATAT
14857715 CTTCAATATC
Statistics
Matches: 69, Mismatches: 8, Indels: 23
0.69 0.08 0.23
Matches are distributed among these distances:
10 1 0.01
11 4 0.06
12 6 0.09
13 12 0.17
14 16 0.23
15 21 0.30
16 8 0.12
17 1 0.01
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.54
Consensus pattern (13 bp):
TATATTTTATATA
Found at i:14861278 original size:17 final size:17
Alignment explanation
Indices: 14861256--14861289 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
14861246 AACTTTTCTA
*
14861256 TATTTTTTATTATTTTT
1 TATTTTTTATCATTTTT
14861273 TATTTTTTATCATTTTT
1 TATTTTTTATCATTTTT
14861290 CACAACATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (17 bp):
TATTTTTTATCATTTTT
Found at i:14861486 original size:17 final size:18
Alignment explanation
Indices: 14861455--14861488 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
14861445 TTTATTATAA
*
14861455 TTTTTTACTATATTTTAT
1 TTTTTTACTAAATTTTAT
14861473 TTTTTTA-TAAATTTTA
1 TTTTTTACTAAATTTTA
14861489 AAAAAAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTTTACTAAATTTTAT
Found at i:14871341 original size:19 final size:19
Alignment explanation
Indices: 14871317--14871354 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
14871307 CAATACATAA
14871317 TCATTTTCGGGTTTTATAT
1 TCATTTTCGGGTTTTATAT
14871336 TCATTTTCGGGTTTTATAT
1 TCATTTTCGGGTTTTATAT
14871355 GAGCTTACGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.16, C:0.11, G:0.16, T:0.58
Consensus pattern (19 bp):
TCATTTTCGGGTTTTATAT
Found at i:14881151 original size:41 final size:41
Alignment explanation
Indices: 14881094--14881176 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
14881084 ATTGTGGGTT
*
14881094 ATACGGCTACTAGAAGAAGATACTCATGATTATTTATATGA
1 ATACGGCTACTAGAAGAAAATACTCATGATTATTTATATGA
14881135 ATACGGCTACTAGAAGAAAATACTCATGATTATTTATATGA
1 ATACGGCTACTAGAAGAAAATACTCATGATTATTTATATGA
14881176 A
1 A
14881177 GGAACCACTG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.31
Consensus pattern (41 bp):
ATACGGCTACTAGAAGAAAATACTCATGATTATTTATATGA
Found at i:14885767 original size:31 final size:29
Alignment explanation
Indices: 14885732--14885801 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 29
14885722 TTTTTTCTTT
* *
14885732 TACATAAAATTTAATTTAATGTGTAATTGTA
1 TACATAAAATTTAATTT--GGTGTAATTATA
* *
14885763 TACATGAATTTTAATTTGGTGTAATTATA
1 TACATAAAATTTAATTTGGTGTAATTATA
*
14885792 CACATAAAAT
1 TACATAAAAT
14885802 ACTAATTGTG
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
29 17 0.53
31 15 0.47
ACGTcount: A:0.41, C:0.06, G:0.10, T:0.43
Consensus pattern (29 bp):
TACATAAAATTTAATTTGGTGTAATTATA
Found at i:14889234 original size:45 final size:45
Alignment explanation
Indices: 14889183--14889287 Score: 192
Period size: 45 Copynumber: 2.3 Consensus size: 45
14889173 ATTTAACATT
14889183 TATAGAAGTGGTAATAGTCTTCACTATTACACATTCATAATGAAA
1 TATAGAAGTGGTAATAGTCTTCACTATTACACATTCATAATGAAA
14889228 TATAGAAGTGGTAATAGTCTTCACTATTACACATTCATAATGAAA
1 TATAGAAGTGGTAATAGTCTTCACTATTACACATTCATAATGAAA
*
14889273 TAAAGAAGTTGGTAA
1 TATAGAAG-TGGTAA
14889288 GACAAAACGA
Statistics
Matches: 58, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
45 52 0.90
46 6 0.10
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.32
Consensus pattern (45 bp):
TATAGAAGTGGTAATAGTCTTCACTATTACACATTCATAATGAAA
Found at i:14900733 original size:20 final size:20
Alignment explanation
Indices: 14900697--14900734 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14900687 AATTATTTTG
*
14900697 TAATTTTTATGTAATAAAAA
1 TAATTTTTATATAATAAAAA
14900717 TAATATTTTATAT-ATAAA
1 TAAT-TTTTATATAATAAA
14900735 CTCGATTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (20 bp):
TAATTTTTATATAATAAAAA
Found at i:14902180 original size:20 final size:21
Alignment explanation
Indices: 14902149--14902195 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
14902139 ATTAAAAAAC
* *
14902149 ATTTTT-ATATAATTTTTAT-
1 ATTTTTAAAATAATTTTAATG
14902168 ATTTTTAAAATAATTTTAATG
1 ATTTTTAAAATAATTTTAATG
14902189 ATTTTTA
1 ATTTTTA
14902196 TGTTTTAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 6 0.25
20 11 0.46
21 7 0.29
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (21 bp):
ATTTTTAAAATAATTTTAATG
Found at i:14905000 original size:16 final size:16
Alignment explanation
Indices: 14904979--14905011 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
14904969 CATTTGGGTA
14904979 TAGTGAAAGGTCAAAT
1 TAGTGAAAGGTCAAAT
14904995 TAGTGAAAGGTCAAAT
1 TAGTGAAAGGTCAAAT
14905011 T
1 T
14905012 CAGTTCATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.24, T:0.27
Consensus pattern (16 bp):
TAGTGAAAGGTCAAAT
Found at i:14914074 original size:35 final size:37
Alignment explanation
Indices: 14914000--14914075 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
14913990 TTAATTTTTT
*
14914000 TATTTGTAATTTCTTAATTTAATAATTTTATTACATA
1 TATTTGTAATTTCTTAATTTAAAAATTTTATTACATA
14914037 TATTT-TAATTT-TTAATTTCAAAAGATTTTA-TACTATA
1 TATTTGTAATTTCTTAATTT-AAAA-ATTTTATTAC-ATA
14914074 TA
1 TA
14914076 ATGGGTTAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
35 7 0.20
36 12 0.34
37 16 0.46
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.55
Consensus pattern (37 bp):
TATTTGTAATTTCTTAATTTAAAAATTTTATTACATA
Found at i:14914652 original size:13 final size:13
Alignment explanation
Indices: 14914634--14914658 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14914624 TGATATGTTT
14914634 ATTAATTAAAAAC
1 ATTAATTAAAAAC
14914647 ATTAATTAAAAA
1 ATTAATTAAAAA
14914659 TAAAAAAGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
ATTAATTAAAAAC
Found at i:14918682 original size:22 final size:22
Alignment explanation
Indices: 14918640--14918684 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
14918630 TTATTTTCCA
*
14918640 TTTTCATATTTTATTCACATTT
1 TTTTCATATTTTATACACATTT
14918662 TTTTCTATATTTTATAC-CATTT
1 TTTTC-ATATTTTATACACATTT
14918684 T
1 T
14918685 ATGGTCATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 11 0.52
23 10 0.48
ACGTcount: A:0.22, C:0.13, G:0.00, T:0.64
Consensus pattern (22 bp):
TTTTCATATTTTATACACATTT
Done.