Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 47 of 290
Found at i:15191442 original size:89 final size:90
Alignment explanation
Indices: 15191328--15192075 Score: 478
Period size: 89 Copynumber: 8.3 Consensus size: 90
15191318 AATCTGACCT
* * * ** * *
15191328 ACTGCAACTTCAGAGG-TATAGGACTTGTCGCCTT-AATCCGCTCCACTGCAACTTTAGGGAGAT
1 ACTGCAACTTCAG-GGAGATAAGACTTGTAGTTTTCAATCTGCTCCACTGCAACTTCAGGGAGAT
*
15191391 AGGATTAGCTATCTTCAGTCTGCTCC
65 AAGATTAGCTATCTTCAGTCTGCTCC
* * * * *
15191417 GCTGCAACTTTAGGGAGATAAGACTTGT-GGTTTCAATCTGCTCCACTGCAACTTTAGGAAGATA
1 ACTGCAACTTCAGGGAGATAAGACTTGTAGTTTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
* * * * *
15191481 AGATTTGTCATGGTAGACTTGA-TCCGAC-CT
66 AGA--T-T-A-GCTA-TCTTCAGTCTG-CTCC
* * * * * *
15191511 ACTACAACTTCAGAGG-TATAGGACTCGTCA-TTTTTAATCCGCTCCACTGCAACTTCAGGGAGA
1 ACTGCAACTTCAG-GGAGATAAGACTTGT-AGTTTTCAATCTGCTCCACTGCAACTTCAGGGAGA
* * * *
15191574 TAGGATTAGTTGTCTTCAGTTTGCTCC
64 TAAGATTAGCTATCTTCAGTCTGCTCC
* * * * * *
15191601 GCTGCAACTTTAGGAAGATAAGACTTGTAATTTT-AACCTGCTCCACTGCAACTTCAGAGAGATA
1 ACTGCAACTTCAGGGAGATAAGACTTGTAGTTTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
* * * *
15191665 AGGTTTG-T-T-TTGA-TCTGCTCT
66 AGATTAGCTATCTTCAGTCTGCTCC
* * * **
15191686 ACTGCAACTTCAGAGAGATAAGA-TATGTAATTATAGCTTCAATCTGTTCCACTGCAACTTCACA
1 ACTGCAACTTCAGGGAGATAAGACT-TGT-AGT-T---TTCAATCTGCTCCACTGCAACTTCAGG
* * * *
15191750 GAAATAAGATTCGCTATCTTTAGTCTACTCC
60 GAGATAAGATTAGCTATCTTCAGTCTGCTCC
* * * **
15191781 ACTGCAACTTCAGGGAGATAAGATTTGTA-ATTTCAA-CTTGCTCTACTGCAACTTCAGATAGAT
1 ACTGCAACTTCAGGGAGATAAGACTTGTAGTTTTCAATC-TGCTCCACTGCAACTTCAGGGAGAT
* * * *
15191844 AAGGTTTGCTATCTTC-GATTTACTCC
65 AAGATTAGCTATCTTCAG-TCTGCTCC
* * * *
15191870 GCTGTAACTTCAGGGAGATAAGA-TATGCTA-TCTTCAATCTGCTCCACTACAACTTCAGGGAGA
1 ACTGCAACTTCAGGGAGATAAGACT-TG-TAGTTTTCAATCTGCTCCACTGCAACTTCAGGGAGA
* **
15191933 TAAGACTT-G-TAACTTCAACCTGCTCC
64 TAAGA-TTAGCTATCTTCAGTCTGCTCC
* * ** * * *
15191959 ATTGCAACTTCAGAGAGATAAGGTTTATAGCTTT-AATCTGCTCCACTGCAACTTCAAGGAGATA
1 ACTGCAACTTCAGGGAGATAAGACTTGTAGTTTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
* *
15192023 AGATTCA-CCATCTTTAGTCTGCTCC
66 AGATT-AGCTATCTTCAGTCTGCTCC
* *
15192048 ACTGCAACTTTAAGGAGATAAGACTTGT
1 ACTGCAACTTCAGGGAGATAAGACTTGT
15192076 GAATTTACTG
Statistics
Matches: 509, Mismatches: 110, Indels: 80
0.73 0.16 0.11
Matches are distributed among these distances:
84 1 0.00
85 28 0.06
86 5 0.01
87 4 0.01
88 42 0.08
89 222 0.44
90 63 0.12
91 36 0.07
92 4 0.01
93 3 0.01
94 30 0.06
95 70 0.14
96 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (90 bp):
ACTGCAACTTCAGGGAGATAAGACTTGTAGTTTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
AGATTAGCTATCTTCAGTCTGCTCC
Found at i:15191601 original size:184 final size:183
Alignment explanation
Indices: 15191323--15191672 Score: 531
Period size: 184 Copynumber: 1.9 Consensus size: 183
15191313 GGTTTAATCT
* * *
15191323 GACCTACTGCAACTTCAGAGGTATAGGACTTGTCGCCTTAATCCGCTCCACTGCAACTTTAGGGA
1 GACCTACTACAACTTCAGAGGTATAGGACTCGTCGCCTTAATCCGCTCCACTGCAACTTCAGGGA
* **
15191388 GATAGGATTAGCTATCTTCAGTCTGCTCCGCTGCAACTTTAGGGAGATAAGACTTGTGGTTTCAA
66 GATAGGATTAGCTATCTTCAGTCTGCTCCGCTGCAACTTTAGGAAGATAAGACTTGTAATTTCAA
* *
15191453 TCTGCTCCACTGCAACTTTAG-GAAGATAAGATTTGTCATGGTAGACTTGATCC
131 CCTGCTCCACTGCAACTTCAGAG-AGATAAGATTTGTCATGGTAGACTTGATCC
***
15191506 GACCTACTACAACTTCAGAGGTATAGGACTCGTCATTTTTAATCCGCTCCACTGCAACTTCAGGG
1 GACCTACTACAACTTCAGAGGTATAGGACTCGTC-GCCTTAATCCGCTCCACTGCAACTTCAGGG
* * * *
15191571 AGATAGGATTAGTTGTCTTCAGTTTGCTCCGCTGCAACTTTAGGAAGATAAGACTTGTAATTTTA
65 AGATAGGATTAGCTATCTTCAGTCTGCTCCGCTGCAACTTTAGGAAGATAAGACTTGTAATTTCA
*
15191636 ACCTGCTCCACTGCAACTTCAGAGAGATAAGGTTTGT
130 ACCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGT
15191673 TTTGATCTGC
Statistics
Matches: 149, Mismatches: 16, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
183 32 0.21
184 116 0.78
185 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (183 bp):
GACCTACTACAACTTCAGAGGTATAGGACTCGTCGCCTTAATCCGCTCCACTGCAACTTCAGGGA
GATAGGATTAGCTATCTTCAGTCTGCTCCGCTGCAACTTTAGGAAGATAAGACTTGTAATTTCAA
CCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTCATGGTAGACTTGATCC
Found at i:15191915 original size:134 final size:132
Alignment explanation
Indices: 15191551--15192081 Score: 486
Period size: 134 Copynumber: 4.0 Consensus size: 132
15191541 TTTTTAATCC
* * * * * * * *
15191551 GCTCCACTGCAACTTCAGGGAGAT-AGGATTAGTTGTCTTCAGTTTGCTCCGCTGCAACTT-TAG
1 GCTCTACTGCAACTTCAGAGAGATAAGGTTTA--TATCTTCAATCTGCTCCACTGCAACTTCAAG
** * **
15191614 GAAGATAAGACTT-G-TAAT-TTTAACCTGCTCCACTGCAACTTCAGAGAGATAAGGTTTGT--T
64 G-AGATAAGA-TTCGCT-ATCTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAAT
* *
15191674 TTGATCT
126 TTCAACT
* *
15191681 GCTCTACTGCAACTTCAGAGAGATAAGATATGTAATTATAGCTTCAATCTGTTCCACTGCAACTT
1 GCTCTACTGCAACTTCAGAGAGATAAG----GT--TTATATCTTCAATCTGCTCCACTGCAACTT
* * *
15191746 CACA-GAAATAAGATTCGCTATCTTTAGTCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTA
60 CA-AGGAGATAAGATTCGCTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
15191810 ATTTCAACTT
124 ATTTCAAC-T
* * * * * * * *
15191820 GCTCTACTGCAACTTCAGATAGATAAGGTTTGCTATCTTCGATTTACTCCGCTGTAACTTCAGGG
1 GCTCTACTGCAACTTCAGAGAGATAAGGTTT-ATATCTTCAATCTGCTCCACTGCAACTTCAAGG
* * * *
15191885 AGATAAGATAT-GCTATCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTC
65 AGATAAGAT-TCGCTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAATTTC
15191949 AACCT
129 AA-CT
* * * *
15191954 GCTCCATTGCAACTTCAGAGAGATAAGGTTTATAGCTTTAATCTGCTCCACTGCAACTTCAAGGA
1 GCTCTACTGCAACTTCAGAGAGATAAGGTTTATATCTTCAATCTGCTCCACTGCAACTTCAAGGA
* * * *
15192019 GATAAGATTCACCATCTTTAGTCTGCTCCACTGCAACTTTAAGGAGATAAGACTTGTGAATTT
66 GATAAGATTCGCTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT-AATTT
15192082 ACTGATCTTG
Statistics
Matches: 325, Mismatches: 55, Indels: 38
0.78 0.13 0.09
Matches are distributed among these distances:
130 22 0.07
131 2 0.01
132 1 0.00
133 75 0.23
134 115 0.35
135 36 0.11
136 38 0.12
137 4 0.01
138 5 0.02
139 27 0.08
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (132 bp):
GCTCTACTGCAACTTCAGAGAGATAAGGTTTATATCTTCAATCTGCTCCACTGCAACTTCAAGGA
GATAAGATTCGCTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAATTTCAA
CT
Found at i:15196468 original size:39 final size:39
Alignment explanation
Indices: 15196414--15196489 Score: 143
Period size: 39 Copynumber: 1.9 Consensus size: 39
15196404 AATTTTGTAT
15196414 TCCTTCGTCGGACTATCACCCTTCTATCATCGTGTTTAC
1 TCCTTCGTCGGACTATCACCCTTCTATCATCGTGTTTAC
*
15196453 TCCTTCGTTGGACTATCACCCTTCTATCATCGTGTTT
1 TCCTTCGTCGGACTATCACCCTTCTATCATCGTGTTT
15196490 TCTCAGACCA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.14, C:0.32, G:0.13, T:0.41
Consensus pattern (39 bp):
TCCTTCGTCGGACTATCACCCTTCTATCATCGTGTTTAC
Found at i:15198308 original size:3 final size:3
Alignment explanation
Indices: 15198300--15198533 Score: 74
Period size: 3 Copynumber: 78.7 Consensus size: 3
15198290 AAAAATAGAA
* * * * *
15198300 AAT AAT AAT -AT ATT AAT AAG AAT TAT AAT GAT ATAT ATT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT
* * ** *
15198345 AACA AAT AAT AA- AA- AAT AAC AAT GGGTT AAT AA- AGAT AAT AAA AAT
1 AA-T AAT AAT AAT AAT AAT AAT AAT --AAT AAT AAT A-AT AAT AAT AAT
* * * *
15198391 AAT AGA- AGT AAA AAT AAT AAT AAT CAAT -AT AAT AAT AGT AAGG AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AA-T AAT
* * * * ** *
15198437 -AT AAT AAT AAT AGT AAT AA- AAT AAA AAC AAT GAT GGT AGT AAT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * *
15198482 AAA AAT AAA AAT AAC AAT AAT AAT AAT AAT GAG GAT ATT AAT AAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
15198529 AAT AA
1 AAT AA
15198534 AATCTAATAT
Statistics
Matches: 166, Mismatches: 48, Indels: 34
0.67 0.19 0.14
Matches are distributed among these distances:
2 17 0.10
3 136 0.82
4 12 0.07
5 1 0.01
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:15198602 original size:24 final size:23
Alignment explanation
Indices: 15198554--15198603 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 23
15198544 TTTTCTTTTA
* *
15198554 AAATAAAATATGTAAAAGGATAT
1 AAATAAAATATGTAAAAAGAGAT
15198577 AAATAAAATAATG-AAAATAGAGAT
1 AAATAAAAT-ATGTAAAA-AGAGAT
15198601 AAA
1 AAA
15198604 GCACGCACAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.66, C:0.00, G:0.12, T:0.22
Consensus pattern (23 bp):
AAATAAAATATGTAAAAAGAGAT
Found at i:15198849 original size:3 final size:3
Alignment explanation
Indices: 15198843--15198969 Score: 61
Period size: 3 Copynumber: 43.7 Consensus size: 3
15198833 TAATAAGGGA
* * * * * * *
15198843 AAT AAT AAC AAT AAT -AC AAT AAT GAT AA- AGT AGT AAT AAA AAT AAA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
15198889 AAT AAC AAT AAT AGT AA- AAT AAT AAT AAT GAT AAT AAAT AAT AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT
* *
15198934 AA- AAG AA- AAT AAT AA- AATT AACT AAT -TT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AA-T AA-T AAT AAT AAT AAT AA
15198970 AGTAGCTAAA
Statistics
Matches: 92, Mismatches: 23, Indels: 18
0.69 0.17 0.14
Matches are distributed among these distances:
2 11 0.12
3 73 0.79
4 8 0.09
ACGTcount: A:0.65, C:0.03, G:0.06, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:15198915 original size:35 final size:36
Alignment explanation
Indices: 15198858--15198948 Score: 89
Period size: 35 Copynumber: 2.6 Consensus size: 36
15198848 TAACAATAAT
* *
15198858 ACAATAAT-GATAAAGTAGTAATAAAAATAA-AAATA
1 ACAATAATAG-TAAAATAATAATAAAAATAATAAATA
**
15198893 ACAATAATAGTAAAATAATAATAATGATAATAAATA
1 ACAATAATAGTAAAATAATAATAAAAATAATAAATA
* * *
15198929 ATAGTAAAAG-AAAATAATAA
1 ACAATAATAGTAAAATAATAA
15198949 AATTAACTAA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
35 34 0.72
36 13 0.28
ACGTcount: A:0.66, C:0.02, G:0.08, T:0.24
Consensus pattern (36 bp):
ACAATAATAGTAAAATAATAATAAAAATAATAAATA
Found at i:15198926 original size:20 final size:19
Alignment explanation
Indices: 15198877--15198931 Score: 58
Period size: 20 Copynumber: 2.9 Consensus size: 19
15198867 ATAAAGTAGT
*
15198877 AATAAAAATAAA-AATAAC
1 AATAATAATAAATAATAAC
* *
15198895 AATAATAGTAAAATAATAAT
1 AATAATAAT-AAATAATAAC
*
15198915 AATGATAATAAATAATA
1 AATAATAATAAATAATA
15198932 GTAAAAGAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
18 7 0.23
19 11 0.37
20 12 0.40
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.25
Consensus pattern (19 bp):
AATAATAATAAATAATAAC
Found at i:15201289 original size:20 final size:20
Alignment explanation
Indices: 15201252--15201289 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
15201242 ACCGAGGCAT
*
15201252 AAATTTTCATCGAAATTTAA
1 AAATTTTCATCAAAATTTAA
15201272 AAATTTTCA-CAAACATTT
1 AAATTTTCATCAAA-ATTT
15201290 GTAATGTCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.45, C:0.13, G:0.03, T:0.39
Consensus pattern (20 bp):
AAATTTTCATCAAAATTTAA
Found at i:15201500 original size:13 final size:13
Alignment explanation
Indices: 15201482--15201506 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15201472 TAATATATTT
15201482 ATTAATTAAAAAC
1 ATTAATTAAAAAC
15201495 ATTAATTAAAAA
1 ATTAATTAAAAA
15201507 AACTTCAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
ATTAATTAAAAAC
Found at i:15205589 original size:19 final size:20
Alignment explanation
Indices: 15205565--15205604 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
15205555 CACATCATCA
15205565 TTTAAATAATTTTTA-AATT
1 TTTAAATAATTTTTAGAATT
**
15205584 TTTAAATTTTTTTTAGAATT
1 TTTAAATAATTTTTAGAATT
15205604 T
1 T
15205605 ATATAATCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (20 bp):
TTTAAATAATTTTTAGAATT
Found at i:15207384 original size:16 final size:16
Alignment explanation
Indices: 15207355--15207393 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 16
15207345 GCGCGACCAT
15207355 TTTTTTAATAATATATATA
1 TTTTTTAAT-AT-TAT-TA
15207374 TTTTTTAATATTATTA
1 TTTTTTAATATTATTA
15207390 TTTT
1 TTTT
15207394 ATTATATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 6 0.30
17 3 0.15
18 2 0.10
19 9 0.45
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTTTTAATATTATTA
Found at i:15207624 original size:25 final size:25
Alignment explanation
Indices: 15207583--15207646 Score: 78
Period size: 25 Copynumber: 2.5 Consensus size: 25
15207573 AAAAGAAAAA
*
15207583 AATTTATTAAGTTTAATAA--TTATTT
1 AATTTATT-ATTTTAATAATGTTA-TT
15207608 AATATTATTATTTTAATAATGTTATT
1 AAT-TTATTATTTTAATAATGTTATT
15207634 AATTTATTATTTT
1 AATTTATTATTTT
15207647 TTATACTTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
25 22 0.63
26 10 0.29
27 3 0.09
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (25 bp):
AATTTATTATTTTAATAATGTTATT
Found at i:15207735 original size:21 final size:21
Alignment explanation
Indices: 15207661--15207739 Score: 77
Period size: 21 Copynumber: 3.6 Consensus size: 21
15207651 ACTTAAAATT
*
15207661 TTTAATAATTTTGAAATTAAG
1 TTTAATAATTTTGAAATTATG
* * *
15207682 TTTCATAATTTTTTAATATTATTA
1 TTTAATAA-TTTTGAA-ATTA-TG
*
15207706 TTTGAATAATTCTGAAATTATG
1 TTT-AATAATTTTGAAATTATG
15207728 TTTAATAATTTT
1 TTTAATAATTTT
15207740 TTAATATTAT
Statistics
Matches: 45, Mismatches: 9, Indels: 8
0.73 0.15 0.13
Matches are distributed among these distances:
21 15 0.33
22 10 0.22
23 8 0.18
24 8 0.18
25 4 0.09
ACGTcount: A:0.37, C:0.03, G:0.06, T:0.54
Consensus pattern (21 bp):
TTTAATAATTTTGAAATTATG
Found at i:15207757 original size:25 final size:25
Alignment explanation
Indices: 15207686--15207780 Score: 101
Period size: 25 Copynumber: 4.0 Consensus size: 25
15207676 ATTAAGTTTC
*
15207686 ATAATTTTTTAATATTATTATTTGA
1 ATAATTTTTTAATATTATTATTTTA
* * *
15207711 ATAA-TTCTGAA-ATTA-T-GTTTA
1 ATAATTTTTTAATATTATTATTTTA
15207732 ATAATTTTTTAATATTATTATTTTA
1 ATAATTTTTTAATATTATTATTTTA
*
15207757 ATAATGTTATTAAT-TTATTATTTT
1 ATAAT-TTTTTAATATTATTATTTT
15207781 TTATGCTTAA
Statistics
Matches: 57, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
21 7 0.12
22 6 0.11
23 8 0.14
24 6 0.11
25 23 0.40
26 7 0.12
ACGTcount: A:0.36, C:0.01, G:0.04, T:0.59
Consensus pattern (25 bp):
ATAATTTTTTAATATTATTATTTTA
Found at i:15207847 original size:87 final size:88
Alignment explanation
Indices: 15207710--15207937 Score: 345
Period size: 87 Copynumber: 2.6 Consensus size: 88
15207700 TTATTATTTG
* *
15207710 AATAATTCTGAAATTATGTTTAATAATTTTTTAATATTATTATTTTAATAATGT-T-ATTAATTT
1 AATAATTTTGAAATTAAGTTTAATAATTTTTTAATATTATTATTTTAATAAT-TCTGA-TAATTT
15207773 ATTATTTTTTATGCTTAAATTTTTT
64 ATTATTTTTTATGCTTAAATTTTTT
15207798 AATAATTTTGAAATTAAGTTTAATAA-TTTTTAATATTATTATTTTAATAATTCTGATAATTTAT
1 AATAATTTTGAAATTAAGTTTAATAATTTTTTAATATTATTATTTTAATAATTCTGATAATTTAT
*
15207862 TATTTTTTATGCTTAGATTTTTT
66 TATTTTTTATGCTTAAATTTTTT
* * * * *
15207885 AATATTTTTAAAATTAAGTCTAATAATTTTTTAGTATTATTAATTTAATAATT
1 AATAATTTTGAAATTAAGTTTAATAATTTTTTAATATTATTATTTTAATAATT
15207938 TTTTATTGGA
Statistics
Matches: 129, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
86 1 0.01
87 79 0.61
88 49 0.38
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (88 bp):
AATAATTTTGAAATTAAGTTTAATAATTTTTTAATATTATTATTTTAATAATTCTGATAATTTAT
TATTTTTTATGCTTAAATTTTTT
Found at i:15207917 original size:134 final size:133
Alignment explanation
Indices: 15207594--15207853 Score: 414
Period size: 134 Copynumber: 2.0 Consensus size: 133
15207584 ATTTATTAAG
* * *
15207594 TTTAATAATTATTTAATATTATTATTTTAATAATGTTATTAATTTATTATTTTTTATACTTAAAA
1 TTTAATAATTTTTTAATATTATTATTTTAATAATGTTATTAATTAATAATTTTTTATACTTAAAA
*
15207659 TTTTTAATAATTTTGAAATTAAGTTTCATAATTTTTTAATATTATTATTTGAATAATTCTGAAAT
66 TTTTTAATAATTTTGAAATTAAGTTTAATAATTTTTTAATATTATTATTTGAATAATTCTG-AAT
*
15207724 TATG
130 TATA
* * * *
15207728 TTTAATAATTTTTTAATATTATTATTTTAATAATGTTATTAATTTATTATTTTTTATGCTTAAAT
1 TTTAATAATTTTTTAATATTATTATTTTAATAATGTTATTAATTAATAATTTTTTATACTTAAAA
*
15207793 TTTTTAATAATTTTGAAATTAAGTTTAATAA-TTTTTAATATTATTATTTTAATAATTCTGA
66 TTTTTAATAATTTTGAAATTAAGTTTAATAATTTTTTAATATTATTATTTGAATAATTCTGA
15207854 TAATTTATTA
Statistics
Matches: 121, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
132 1 0.01
133 28 0.23
134 92 0.76
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (133 bp):
TTTAATAATTTTTTAATATTATTATTTTAATAATGTTATTAATTAATAATTTTTTATACTTAAAA
TTTTTAATAATTTTGAAATTAAGTTTAATAATTTTTTAATATTATTATTTGAATAATTCTGAATT
ATA
Found at i:15211219 original size:6 final size:6
Alignment explanation
Indices: 15211210--15211242 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
15211200 CTCCTTCTCC
*
15211210 TTCTTG TTCTTG TTCTTG TTCTTT TTCTT- TTCT
1 TTCTTG TTCTTG TTCTTG TTCTTG TTCTTG TTCT
15211243 CTCTTTGCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
5 4 0.15
6 22 0.85
ACGTcount: A:0.00, C:0.18, G:0.09, T:0.73
Consensus pattern (6 bp):
TTCTTG
Found at i:15212689 original size:21 final size:20
Alignment explanation
Indices: 15212647--15212706 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 20
15212637 AACTTATTTA
* **
15212647 TATTTTAATTAATCATGTTT
1 TATTTTAATTAATCTTAATT
15212667 TAGTTTTAATTAATCTTAATT
1 TA-TTTTAATTAATCTTAATT
* *
15212688 TA-CTTAATTAAGCTTAATT
1 TATTTTAATTAATCTTAATT
15212707 ATTAATTTCG
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
19 15 0.44
20 2 0.06
21 17 0.50
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (20 bp):
TATTTTAATTAATCTTAATT
Found at i:15215708 original size:27 final size:27
Alignment explanation
Indices: 15215670--15215724 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
15215660 GAACAAGCTG
15215670 CGAGTCATGGTTATCTTCCTCCGCTTT
1 CGAGTCATGGTTATCTTCCTCCGCTTT
15215697 CGAGTCATGGTTATCTTCCTCCGCTTT
1 CGAGTCATGGTTATCTTCCTCCGCTTT
15215724 C
1 C
15215725 TTTACAAGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.11, C:0.31, G:0.18, T:0.40
Consensus pattern (27 bp):
CGAGTCATGGTTATCTTCCTCCGCTTT
Found at i:15216550 original size:75 final size:75
Alignment explanation
Indices: 15216469--15216611 Score: 180
Period size: 75 Copynumber: 1.9 Consensus size: 75
15216459 GATGGGTCGT
* * * *
15216469 AATATGGAGGAGTG-GAGCATCGAATTGATATCAAAGCGTATAGAAGATGCTCCGAGTGCTAAAG
1 AATATGGAGGAG-GAGAACATCGAATTGATATCAAAGCGTACAGAAGATGCTCCAAATGCTAAAG
15216533 AGATAGATATG
65 AGATAGATATG
* * * * * *
15216544 AATATGGAGGAGGAGAACGTTGAATTGATGTCAAAGCTTACAGAAGATTCTTCAAATGCTAAAGA
1 AATATGGAGGAGGAGAACATCGAATTGATATCAAAGCGTACAGAAGATGCTCCAAATGCTAAAGA
15216609 GAT
66 GAT
15216612 GGGTAAAGAT
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
74 1 0.02
75 56 0.98
ACGTcount: A:0.38, C:0.10, G:0.27, T:0.24
Consensus pattern (75 bp):
AATATGGAGGAGGAGAACATCGAATTGATATCAAAGCGTACAGAAGATGCTCCAAATGCTAAAGA
GATAGATATG
Found at i:15218577 original size:6 final size:6
Alignment explanation
Indices: 15218566--15218598 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
15218556 ACTATTATTA
*
15218566 TATATG TATATG TATATG TATATA TATATG TAT
1 TATATG TATATG TATATG TATATG TATATG TAT
15218599 TATTATTTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (6 bp):
TATATG
Found at i:15218625 original size:12 final size:12
Alignment explanation
Indices: 15218558--15218617 Score: 52
Period size: 12 Copynumber: 4.8 Consensus size: 12
15218548 TTCTGACTAC
15218558 TATTATTATATATG
1 TATTATTAT-T-TG
*
15218572 TA-TATGTATATG
1 TATTAT-TATTTG
*
15218584 TA-TATATATATG
1 TATTAT-TATTTG
15218596 TATTATTATTTG
1 TATTATTATTTG
15218608 TATTATTATT
1 TATTATTATT
15218618 ATTATTATCA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
12 30 0.73
13 6 0.15
14 5 0.12
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.58
Consensus pattern (12 bp):
TATTATTATTTG
Found at i:15220290 original size:3 final size:3
Alignment explanation
Indices: 15220282--15220306 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
15220272 TCAACCATAT
15220282 GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA G
15220307 CCAATATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:15225534 original size:16 final size:17
Alignment explanation
Indices: 15225501--15225539 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
15225491 AACTTAAATC
15225501 TTTTAAGATTTAGATAA
1 TTTTAAGATTTAGATAA
15225518 TTTTAA-ATTT-GAGTAA
1 TTTTAAGATTTAGA-TAA
15225534 TTTTAA
1 TTTTAA
15225540 CTTCAAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 2 0.10
16 13 0.62
17 6 0.29
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.51
Consensus pattern (17 bp):
TTTTAAGATTTAGATAA
Found at i:15226320 original size:21 final size:21
Alignment explanation
Indices: 15226294--15226339 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
15226284 AAAGTATATT
*
15226294 TTAAATATTTA-AATATAACTA
1 TTAAATATTTATAAT-TAAATA
15226315 TTAAATATTTATAATTAAATA
1 TTAAATATTTATAATTAAATA
15226336 TTAA
1 TTAA
15226340 CACATTTGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 20 0.87
22 3 0.13
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (21 bp):
TTAAATATTTATAATTAAATA
Found at i:15238326 original size:15 final size:16
Alignment explanation
Indices: 15238300--15238329 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
15238290 TCATAACAAT
15238300 TTTATCATTTTTATAG
1 TTTATCATTTTTATAG
15238316 TTTAT-ATTTTTATA
1 TTTATCATTTTTATA
15238330 ACTTTTAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.67
Consensus pattern (16 bp):
TTTATCATTTTTATAG
Found at i:15247497 original size:31 final size:31
Alignment explanation
Indices: 15247462--15247530 Score: 120
Period size: 31 Copynumber: 2.2 Consensus size: 31
15247452 GTTAACAAAC
15247462 CAATGACTTAAATAAAAACTTTTGAATAATT
1 CAATGACTTAAATAAAAACTTTTGAATAATT
* *
15247493 CAATGACTTAAATGAAAACTTTTGAATAGTT
1 CAATGACTTAAATAAAAACTTTTGAATAATT
15247524 CAATGAC
1 CAATGAC
15247531 CAAATTGTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (31 bp):
CAATGACTTAAATAAAAACTTTTGAATAATT
Found at i:15252632 original size:29 final size:29
Alignment explanation
Indices: 15252598--15252679 Score: 96
Period size: 29 Copynumber: 2.8 Consensus size: 29
15252588 AACCTAGTGA
15252598 AATTTTAGCTCGGACGAGCAACCTTGTAT
1 AATTTTAGCTCGGACGAGCAACCTTGTAT
* *
15252627 ACTTTTAGC-CTGGACTGA-CAACCTTGTGT
1 AATTTTAGCTC-GGAC-GAGCAACCTTGTAT
* *
15252656 AATTTTAGCTTGGACAAGCAACCT
1 AATTTTAGCTCGGACGAGCAACCT
15252680 AGTGTGGTGT
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
28 2 0.05
29 40 0.91
30 2 0.05
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.32
Consensus pattern (29 bp):
AATTTTAGCTCGGACGAGCAACCTTGTAT
Found at i:15252684 original size:29 final size:28
Alignment explanation
Indices: 15252588--15252684 Score: 95
Period size: 29 Copynumber: 3.4 Consensus size: 28
15252578 CTAGTAACCT
* *
15252588 AACCTAGTGAAATTTTAGCTCGGACGAGC
1 AACCTAGTGTAATTTTAGCTTGGAC-AGC
* * * * *
15252617 AACCTTGTATACTTTTAGCCTGGACTGAC
1 AACCTAGTGTAATTTTAGCTTGGACAG-C
*
15252646 AACCTTGTGTAATTTTAGCTTGGACAAGC
1 AACCTAGTGTAATTTTAGCTTGGAC-AGC
15252675 AACCTAGTGT
1 AACCTAGTGT
15252685 GGTGTAGTTT
Statistics
Matches: 54, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
28 1 0.02
29 52 0.96
30 1 0.02
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (28 bp):
AACCTAGTGTAATTTTAGCTTGGACAGC
Found at i:15254042 original size:23 final size:23
Alignment explanation
Indices: 15254009--15254073 Score: 121
Period size: 23 Copynumber: 2.8 Consensus size: 23
15253999 ATGCAGCAAA
*
15254009 AATCCAACCAAACACACCAAAAT
1 AATCCACCCAAACACACCAAAAT
15254032 AATCCACCCAAACACACCAAAAT
1 AATCCACCCAAACACACCAAAAT
15254055 AATCCACCCAAACACACCA
1 AATCCACCCAAACACACCA
15254074 GAACGGCACT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.52, C:0.40, G:0.00, T:0.08
Consensus pattern (23 bp):
AATCCACCCAAACACACCAAAAT
Found at i:15254274 original size:24 final size:24
Alignment explanation
Indices: 15254226--15254280 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
15254216 TATTCAATTT
15254226 TCATA-TTTCAATTCAATCACTTTC
1 TCATATTTTCAATTCAATCAC-TTC
*
15254250 TCATATTTTCCATTCAAATCA-TTC
1 TCATATTTTCAATTC-AATCACTTC
15254274 TCA-ATTT
1 TCATATTT
15254281 AATCACAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 4 0.14
24 11 0.39
25 8 0.29
26 5 0.18
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.47
Consensus pattern (24 bp):
TCATATTTTCAATTCAATCACTTC
Found at i:15255079 original size:16 final size:16
Alignment explanation
Indices: 15255060--15255090 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15255050 TTAGTCTCTA
*
15255060 TTTCTTTTCTTCTTTG
1 TTTCTTTTATTCTTTG
15255076 TTTCTTTTATTCTTT
1 TTTCTTTTATTCTTT
15255091 TATTTATTTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.03, C:0.16, G:0.03, T:0.77
Consensus pattern (16 bp):
TTTCTTTTATTCTTTG
Found at i:15260609 original size:28 final size:27
Alignment explanation
Indices: 15260573--15260629 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 27
15260563 CATAACCATT
15260573 TTTTTCTTTCTTCTTC-CATTTTCTTTTC
1 TTTTTCTTTCTTCTTCACA--TTCTTTTC
*
15260601 TTTTTCTTTTTTCTTCACATTCTTTTC
1 TTTTTCTTTCTTCTTCACATTCTTTTC
15260628 TT
1 TT
15260630 GTGTCTGGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 10 0.37
28 15 0.56
29 2 0.07
ACGTcount: A:0.05, C:0.23, G:0.00, T:0.72
Consensus pattern (27 bp):
TTTTTCTTTCTTCTTCACATTCTTTTC
Found at i:15260612 original size:18 final size:18
Alignment explanation
Indices: 15260572--15260615 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
15260562 GCATAACCAT
15260572 TTTTTTC-TTTCTTCTTC
1 TTTTTTCTTTTCTTCTTC
** *
15260589 CATTTTCTTTTCTTTTTC
1 TTTTTTCTTTTCTTCTTC
15260607 TTTTTTCTT
1 TTTTTTCTT
15260616 CACATTCTTT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTTTTCTTTTCTTCTTC
Found at i:15265535 original size:26 final size:26
Alignment explanation
Indices: 15265505--15265581 Score: 101
Period size: 26 Copynumber: 3.2 Consensus size: 26
15265495 TGAAATTCCC
15265505 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
15265531 ATCATGGAACATTTACCT-A---A-T
1 ATCATGGAACATTTACCTAACCCATT
**
15265552 ATCATAAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
15265578 ATCA
1 ATCA
15265582 ATTTGTATTA
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
21 17 0.39
22 2 0.05
25 2 0.05
26 23 0.52
ACGTcount: A:0.39, C:0.25, G:0.05, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:15265556 original size:21 final size:22
Alignment explanation
Indices: 15265505--15265571 Score: 73
Period size: 21 Copynumber: 2.9 Consensus size: 22
15265495 TGAAATTCCC
15265505 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCT-A---ATT
15265531 ATCATGGAACATTTACCTAA-T
1 ATCATGGAACATTTACCTAATT
**
15265552 ATCATAAAACATTTACCTAA
1 ATCATGGAACATTTACCTAA
15265572 CCCATTATCA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
21 19 0.49
22 1 0.03
25 1 0.03
26 18 0.46
ACGTcount: A:0.40, C:0.22, G:0.06, T:0.31
Consensus pattern (22 bp):
ATCATGGAACATTTACCTAATT
Found at i:15270564 original size:18 final size:20
Alignment explanation
Indices: 15270529--15270569 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
15270519 CTAACTTGAA
*
15270529 TTTAATGTTAAAATTATA-T
1 TTTAACGTTAAAATTATAGT
15270548 TTTAACGTTAAAA-TATAGT
1 TTTAACGTTAAAATTATAGT
15270567 TTT
1 TTT
15270570 GAACTCCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.39, C:0.02, G:0.07, T:0.51
Consensus pattern (20 bp):
TTTAACGTTAAAATTATAGT
Found at i:15280351 original size:15 final size:16
Alignment explanation
Indices: 15280321--15280358 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
15280311 TTAAAGTTAA
15280321 AAATAATAATTAATTAT
1 AAAT-ATAATTAATTAT
15280338 AAATATAA-TAATTAT
1 AAATATAATTAATTAT
15280353 AAATAT
1 AAATAT
15280359 GTTCAATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 13 0.62
16 4 0.19
17 4 0.19
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
AAATATAATTAATTAT
Found at i:15281697 original size:7 final size:7
Alignment explanation
Indices: 15281687--15281716 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
15281677 ATTATTTTTA
15281687 ATTTAAT
1 ATTTAAT
15281694 ATTTAAT
1 ATTTAAT
15281701 ATTTAAT
1 ATTTAAT
15281708 ATTTAAT
1 ATTTAAT
15281715 AT
1 AT
15281717 AGTTGTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
ATTTAAT
Found at i:15291902 original size:22 final size:22
Alignment explanation
Indices: 15291875--15291916 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
15291865 TTAATCATGT
*
15291875 AAATA-TATATAATTTAATTATA
1 AAATATTAT-TAAATTAATTATA
15291897 AAATATTATTAAATTAATTA
1 AAATATTATTAAATTAATTA
15291917 ATTATAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
AAATATTATTAAATTAATTATA
Found at i:15291934 original size:22 final size:22
Alignment explanation
Indices: 15291874--15291934 Score: 54
Period size: 26 Copynumber: 2.6 Consensus size: 22
15291864 TTTAATCATG
15291874 TAAATATATA-TAATTTAATTA
1 TAAATATATATTAATTTAATTA
15291895 TAAA-ATATTATTAAATTAATTAATTA
1 TAAATATA-TATT-AA-T--TTAATTA
15291921 TAAATATCATATTA
1 TAAATAT-ATATTA
15291935 TGAATTAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
20 3 0.09
21 6 0.19
22 1 0.03
23 2 0.06
24 1 0.03
26 12 0.38
27 6 0.19
28 1 0.03
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (22 bp):
TAAATATATATTAATTTAATTA
Found at i:15292120 original size:20 final size:20
Alignment explanation
Indices: 15292064--15292126 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 20
15292054 ATTATTTATC
* *
15292064 ATTATTATTATTATTCTATCAA
1 ATTATAATTATTA-T-TATTAA
15292086 ATTATAATT-TATATTATTAA
1 ATTATAATTAT-TATTATTAA
*
15292106 ATTATGATTATTATTATTAA
1 ATTATAATTATTATTATTAA
15292126 A
1 A
15292127 AATAAATTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
20 23 0.64
21 3 0.08
22 10 0.28
ACGTcount: A:0.41, C:0.03, G:0.02, T:0.54
Consensus pattern (20 bp):
ATTATAATTATTATTATTAA
Found at i:15299784 original size:43 final size:42
Alignment explanation
Indices: 15299627--15299785 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 42
15299617 TATGTGTTAT
* * * *
15299627 CGTGTAAGATCACGTCTGGGACGTTGGCATCGACTTATGATTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATC-AATTTTGA-TTA
* * * * *
15299671 CGTGTAAGACCATGTTTGGGATATTGGCATC-GTATTTGATTT
1 CGTGTAAGACCACGTCTGGGACATTGGCATCAAT-TTTGATTA
* *
15299713 CGTATAAGACC-CTGTCTGGGACAATGGCATCAATGTTTGATTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATCAAT-TTTGATTA
*
15299756 CATGTAAGACCACGTCTGGGA-AGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACA-TTGGCAT
15299786 TGTATGTGCT
Statistics
Matches: 91, Mismatches: 19, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
42 29 0.32
43 35 0.38
44 27 0.30
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCAATTTTGATTA
Found at i:15302391 original size:61 final size:61
Alignment explanation
Indices: 15302294--15302420 Score: 186
Period size: 61 Copynumber: 2.1 Consensus size: 61
15302284 TGAGAAATTG
* *
15302294 ACACGGCCTGGACTTCCGTACACGGGTAGACTACACGCCCGTGTACT-TTCAGCAGACTCTA
1 ACACGGCCTGGACTTCCGTACACGGGTAGACCACACGCCCGTG-ACTATTCAACAGACTCTA
* *
15302355 ACACGGCCTGGACCTT-CTTACACGGGTAGACCACACGCCCGTGGCTATTCAACAGACTCTA
1 ACACGGCCTGGA-CTTCCGTACACGGGTAGACCACACGCCCGTGACTATTCAACAGACTCTA
15302416 ACACG
1 ACACG
15302421 ATTTGAAACA
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
60 2 0.03
61 55 0.92
62 3 0.05
ACGTcount: A:0.24, C:0.34, G:0.22, T:0.20
Consensus pattern (61 bp):
ACACGGCCTGGACTTCCGTACACGGGTAGACCACACGCCCGTGACTATTCAACAGACTCTA
Found at i:15310056 original size:6 final size:6
Alignment explanation
Indices: 15310045--15310085 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
15310035 TATTTTACTA
* *
15310045 TTATTT TTATTT TTATTT TTATTT TTGTTT CTA-TT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
15310086 CAAATTCCAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 4 0.13
6 26 0.87
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.80
Consensus pattern (6 bp):
TTATTT
Found at i:15316907 original size:26 final size:26
Alignment explanation
Indices: 15316878--15316932 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
15316868 TAATGGTTCA
15316878 ATAAAAGGGCGAATTTGGTATTTAGC
1 ATAAAAGGGCGAATTTGGTATTTAGC
15316904 ATAAAAGGGCGAATTTGGTATTTAGC
1 ATAAAAGGGCGAATTTGGTATTTAGC
15316930 ATA
1 ATA
15316933 TTATATTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.36, C:0.07, G:0.25, T:0.31
Consensus pattern (26 bp):
ATAAAAGGGCGAATTTGGTATTTAGC
Found at i:15317969 original size:22 final size:22
Alignment explanation
Indices: 15317915--15317969 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
15317905 GAACAGTACC
* * *
15317915 ACACGTCCGTGTGGCTAATTTA
1 ACACGCCCGTGCGGCTAATATA
*
15317937 ACATGCCCGTGCGGCTAATATA
1 ACACGCCCGTGCGGCTAATATA
*
15317959 ACACGCTCGTG
1 ACACGCCCGTG
15317970 TCCTCAACCT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (22 bp):
ACACGCCCGTGCGGCTAATATA
Found at i:15320690 original size:342 final size:342
Alignment explanation
Indices: 15320065--15320747 Score: 1366
Period size: 342 Copynumber: 2.0 Consensus size: 342
15320055 GTCATTACAG
15320065 TATATTGGCACATAAACAAGTATAAATGAAATATTATCCATCTAAATATAACTTTAATGGGTCCA
1 TATATTGGCACATAAACAAGTATAAATGAAATATTATCCATCTAAATATAACTTTAATGGGTCCA
15320130 CAGTACTTTACAAGTGTAATTAAAACAAATCGGGATTAGATCCTAAAGCTTAGTAAATTTTTTGT
66 CAGTACTTTACAAGTGTAATTAAAACAAATCGGGATTAGATCCTAAAGCTTAGTAAATTTTTTGT
15320195 TAAATTTTAAATTTTCTTCTTTTGAACAGTACCACACGCCCGTGTGGCTAATATAACACGCCCGT
131 TAAATTTTAAATTTTCTTCTTTTGAACAGTACCACACGCCCGTGTGGCTAATATAACACGCCCGT
15320260 GTCCTTAACCCGTGTGCAACACTGACTTTTAAACACGGCCATGACACACGTCCGTGTGACCTGCC
196 GTCCTTAACCCGTGTGCAACACTGACTTTTAAACACGGCCATGACACACGTCCGTGTGACCTGCC
15320325 CATGTACTAAATGACTTTATGACACGGCCGTGGCAACCAAGGCACACGTCCGTGTGACAAACTAT
261 CATGTACTAAATGACTTTATGACACGGCCGTGGCAACCAAGGCACACGTCCGTGTGACAAACTAT
15320390 TCGAACTCAAAATGAAA
326 TCGAACTCAAAATGAAA
15320407 TATATTGGCACATAAACAAGTATAAATGAAATATTATCCATCTAAATATAACTTTAATGGGTCCA
1 TATATTGGCACATAAACAAGTATAAATGAAATATTATCCATCTAAATATAACTTTAATGGGTCCA
15320472 CAGTACTTTACAAGTGTAATTAAAACAAATCGGGATTAGATCCTAAAGCTTAGTAAATTTTTTGT
66 CAGTACTTTACAAGTGTAATTAAAACAAATCGGGATTAGATCCTAAAGCTTAGTAAATTTTTTGT
15320537 TAAATTTTAAATTTTCTTCTTTTGAACAGTACCACACGCCCGTGTGGCTAATATAACACGCCCGT
131 TAAATTTTAAATTTTCTTCTTTTGAACAGTACCACACGCCCGTGTGGCTAATATAACACGCCCGT
15320602 GTCCTTAACCCGTGTGCAACACTGACTTTTAAACACGGCCATGACACACGTCCGTGTGACCTGCC
196 GTCCTTAACCCGTGTGCAACACTGACTTTTAAACACGGCCATGACACACGTCCGTGTGACCTGCC
15320667 CATGTACTAAATGACTTTATGACACGGCCGTGGCAACCAAGGCACACGTCCGTGTGACAAACTAT
261 CATGTACTAAATGACTTTATGACACGGCCGTGGCAACCAAGGCACACGTCCGTGTGACAAACTAT
15320732 TCGAACTCAAAATGAA
326 TCGAACTCAAAATGAA
15320748 CCTTGTATTT
Statistics
Matches: 341, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
342 341 1.00
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (342 bp):
TATATTGGCACATAAACAAGTATAAATGAAATATTATCCATCTAAATATAACTTTAATGGGTCCA
CAGTACTTTACAAGTGTAATTAAAACAAATCGGGATTAGATCCTAAAGCTTAGTAAATTTTTTGT
TAAATTTTAAATTTTCTTCTTTTGAACAGTACCACACGCCCGTGTGGCTAATATAACACGCCCGT
GTCCTTAACCCGTGTGCAACACTGACTTTTAAACACGGCCATGACACACGTCCGTGTGACCTGCC
CATGTACTAAATGACTTTATGACACGGCCGTGGCAACCAAGGCACACGTCCGTGTGACAAACTAT
TCGAACTCAAAATGAAA
Found at i:15321524 original size:18 final size:18
Alignment explanation
Indices: 15321503--15321562 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
15321493 AATTGGTTAA
*
15321503 TCAGTAATATTCATTTAT
1 TCAGTAATAATCATTTAT
*
15321521 TCAGT-ATCAGTCATTTAT
1 TCAGTAAT-AATCATTTAT
* * *
15321539 TCTGTAACAATCAATTAT
1 TCAGTAATAATCATTTAT
15321557 TCAGTA
1 TCAGTA
15321563 GCATACAGTC
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
17 2 0.06
18 31 0.91
19 1 0.03
ACGTcount: A:0.33, C:0.15, G:0.08, T:0.43
Consensus pattern (18 bp):
TCAGTAATAATCATTTAT
Found at i:15321710 original size:6 final size:6
Alignment explanation
Indices: 15321694--15321726 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
15321684 CACCATAAGG
*
15321694 GTAACA ATAACA GTAACA GTAACA GTAACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTA
15321727 GCGGTACACA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.52, C:0.15, G:0.15, T:0.18
Consensus pattern (6 bp):
GTAACA
Found at i:15322466 original size:3 final size:3
Alignment explanation
Indices: 15322458--15322488 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
15322448 TTTGTTTTAT
15322458 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
15322489 CAACTTAGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:15324279 original size:15 final size:15
Alignment explanation
Indices: 15324259--15324290 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
15324249 TTGTGGATGA
15324259 TGATATTGAATTGTT
1 TGATATTGAATTGTT
15324274 TGATATTGAATTGTT
1 TGATATTGAATTGTT
15324289 TG
1 TG
15324291 CAAATTGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.00, G:0.22, T:0.53
Consensus pattern (15 bp):
TGATATTGAATTGTT
Found at i:15331694 original size:47 final size:47
Alignment explanation
Indices: 15331623--15332074 Score: 751
Period size: 47 Copynumber: 9.6 Consensus size: 47
15331613 CCCTTCGGGA
* * * * * *
15331623 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15331670 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15331717 CTTATCACATATATACACTTTCACATTCATCGCATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15331764 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15331811 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15331858 CTTATCACATATATACACTTTCACATTCATCATATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15331905 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15331952 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15332001 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15332048 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
15332075 TATTCAAATA
Statistics
Matches: 382, Mismatches: 21, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 337 0.88
49 45 0.12
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:15333923 original size:16 final size:16
Alignment explanation
Indices: 15333902--15333935 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
15333892 AAAACATTAT
15333902 TAGCATGCATGCTATC
1 TAGCATGCATGCTATC
15333918 TAGCATGCATGCTATC
1 TAGCATGCATGCTATC
15333934 TA
1 TA
15333936 CATACAACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (16 bp):
TAGCATGCATGCTATC
Found at i:15344936 original size:59 final size:59
Alignment explanation
Indices: 15344845--15344964 Score: 222
Period size: 60 Copynumber: 2.0 Consensus size: 59
15344835 AAGTTATGTA
15344845 ATACTAAAGAAGGTATTAATTGGGTGTAAAAAACTGAAGAAAAATACATAAAGAAGTCT
1 ATACTAAAGAAGGTATTAATTGGGTGTAAAAAACTGAAGAAAAATACATAAAGAAGTCT
*
15344904 ATACTAAAGAAGGTATTAAATTGGGTGTAAAAAATTGAAGAAAAATACATAAAGAAGTCT
1 ATACTAAAGAAGGTATT-AATTGGGTGTAAAAAACTGAAGAAAAATACATAAAGAAGTCT
15344964 A
1 A
15344965 GTTCTTTCGG
Statistics
Matches: 59, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
59 17 0.29
60 42 0.71
ACGTcount: A:0.52, C:0.06, G:0.18, T:0.24
Consensus pattern (59 bp):
ATACTAAAGAAGGTATTAATTGGGTGTAAAAAACTGAAGAAAAATACATAAAGAAGTCT
Found at i:15345857 original size:28 final size:28
Alignment explanation
Indices: 15345817--15345872 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
15345807 TTTGTTTACA
15345817 TGTAAATAAGTCATTTTTCCTGTAAAAT
1 TGTAAATAAGTCATTTTTCCTGTAAAAT
15345845 TGTAAATAAGTCATTTTTCCTGTAAAAT
1 TGTAAATAAGTCATTTTTCCTGTAAAAT
15345873 GACTTACCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.43
Consensus pattern (28 bp):
TGTAAATAAGTCATTTTTCCTGTAAAAT
Found at i:15346108 original size:22 final size:22
Alignment explanation
Indices: 15346083--15346124 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
15346073 TAGTCATATA
15346083 ATAAATTATTAATATAATAACT
1 ATAAATTATTAATATAATAACT
* * *
15346105 ATAATTTATTATTTTAATAA
1 ATAAATTATTAATATAATAA
15346125 ATTATTTAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAACT
Found at i:15347449 original size:30 final size:31
Alignment explanation
Indices: 15347413--15347479 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
15347403 GTTTGAATTT
15347413 AGTCACTCAAC-TT-TCAAAAAATAACAAATC
1 AGTCACT-AACGTTCTCAAAAAATAACAAATC
* *
15347443 AGTCACTAACGTTCTCAAAAAGTGACAAATC
1 AGTCACTAACGTTCTCAAAAAATAACAAATC
15347474 AGTCAC
1 AGTCAC
15347480 CCATTAACAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
29 3 0.09
30 9 0.27
31 21 0.64
ACGTcount: A:0.45, C:0.24, G:0.09, T:0.22
Consensus pattern (31 bp):
AGTCACTAACGTTCTCAAAAAATAACAAATC
Found at i:15348262 original size:18 final size:19
Alignment explanation
Indices: 15348235--15348272 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
15348225 AAATCTTACA
15348235 ACAAAGTGAAATG-TAAAAT
1 ACAAAGTGAAA-GCTAAAAT
15348254 ACAAA-TGAAAGCTAAAAT
1 ACAAAGTGAAAGCTAAAAT
15348272 A
1 A
15348273 GGAATCACGG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 1 0.06
18 12 0.67
19 5 0.28
ACGTcount: A:0.61, C:0.08, G:0.13, T:0.18
Consensus pattern (19 bp):
ACAAAGTGAAAGCTAAAAT
Found at i:15348323 original size:18 final size:19
Alignment explanation
Indices: 15348296--15348333 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
15348286 GCATCTCCAT
15348296 TTTTTCTTTCTTCTTCTTC
1 TTTTTCTTTCTTCTTCTTC
15348315 TTTTT-TTTCTTCTTCTTC
1 TTTTTCTTTCTTCTTCTTC
15348333 T
1 T
15348334 ATTGCCTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 14 0.74
19 5 0.26
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTTCTTTCTTCTTCTTC
Found at i:15358194 original size:43 final size:43
Alignment explanation
Indices: 15358130--15358276 Score: 158
Period size: 43 Copynumber: 3.4 Consensus size: 43
15358120 ATCAAGATGT
*
15358130 GATTACATGTAAGA-CACTGTGTGGGACAGTGGCATTGTATTGC
1 GATTACATGTAAGACCA-TGTGTGGGACAGTGGCATCGTATTGC
* *
15358173 GATTACATGTAAGACCATGTGTGGGACATTGGCATCGTTAAT-C
1 GATTACATGTAAGACCATGTGTGGGACAGTGGCATCG-TATTGC
* * * *
15358216 GACTT-CGTGTAAGACCGTGTGTGAGACAGTGGCATCG-ATATGT
1 GA-TTACATGTAAGACCATGTGTGGGACAGTGGCATCGTAT-TGC
*
15358259 GATAACATGTAAGACCAT
1 GATTACATGTAAGACCAT
15358277 ATCTAGGATA
Statistics
Matches: 86, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
43 76 0.88
44 7 0.08
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTGTGGGACAGTGGCATCGTATTGC
Found at i:15361059 original size:2 final size:2
Alignment explanation
Indices: 15361052--15361096 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
15361042 TACAATATTT
15361052 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
15361094 CA C
1 CA C
15361097 TCTCTCTCTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.51, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:15361124 original size:2 final size:2
Alignment explanation
Indices: 15361119--15361143 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
15361109 TCTCTCTCTC
15361119 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
15361144 GTTTTCTTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15363879 original size:31 final size:31
Alignment explanation
Indices: 15363800--15363880 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
15363790 GGTCATTTAG
* * *
15363800 TTAAAAAAGTTACAATTT-AGTCATTAAACTA
1 TTAAAAAATTTTC-ATTTAAGTCACTAAACTA
* *
15363831 TTCAAAAGTTTTCATTTAAGTCACTAAACTA
1 TTAAAAAATTTTCATTTAAGTCACTAAACTA
15363862 TTTAAAAAATTTT-ATTTAA
1 -TTAAAAAATTTTCATTTAA
15363881 ATTACTGGGC
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
30 4 0.10
31 27 0.66
32 10 0.24
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (31 bp):
TTAAAAAATTTTCATTTAAGTCACTAAACTA
Found at i:15372062 original size:25 final size:25
Alignment explanation
Indices: 15372017--15372094 Score: 84
Period size: 25 Copynumber: 3.1 Consensus size: 25
15372007 CAACTTGCAA
* *
15372017 GAGCAACCCGTTATTTAGCTCTTAT
1 GAGCATCCCGTTATTTGGCTCTTAT
* * * *
15372042 GGGCATCCCGTTATATGGCTCTCAC
1 GAGCATCCCGTTATTTGGCTCTTAT
* *
15372067 GAGCTTCCCGATATTTGGCTCTTAT
1 GAGCATCCCGTTATTTGGCTCTTAT
15372092 GAG
1 GAG
15372095 TTTCTTGATT
Statistics
Matches: 41, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (25 bp):
GAGCATCCCGTTATTTGGCTCTTAT
Found at i:15372184 original size:25 final size:25
Alignment explanation
Indices: 15372047--15372186 Score: 83
Period size: 25 Copynumber: 5.6 Consensus size: 25
15372037 CTTATGGGCA
*
15372047 TCCCGTTATATGGCTC-TCACGAGCT
1 TCCCGTTATATGGCTCGT-AAGAGCT
* * * * *
15372072 TCCCGATATTTGGCTCTTATGAGTT
1 TCCCGTTATATGGCTCGTAAGAGCT
** * *
15372097 TCTTGATTA-ATGGCTCCCT-TGAGCT
1 TCCCG-TTATATGGCT-CGTAAGAGCT
*
15372122 TCCCGTT-TATGGCTCGTATGAGCT
1 TCCCGTTATATGGCTCGTAAGAGCT
**
15372146 TCCCAATA-ATTGGCTCGTAAGAGCT
1 TCCCGTTATA-TGGCTCGTAAGAGCT
*
15372171 TCTCGTTATATGGCTC
1 TCCCGTTATATGGCTC
15372187 ACATGGTCAA
Statistics
Matches: 88, Mismatches: 19, Indels: 16
0.72 0.15 0.13
Matches are distributed among these distances:
23 2 0.02
24 20 0.23
25 60 0.68
26 6 0.07
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (25 bp):
TCCCGTTATATGGCTCGTAAGAGCT
Found at i:15372184 original size:74 final size:75
Alignment explanation
Indices: 15372047--15372186 Score: 178
Period size: 74 Copynumber: 1.9 Consensus size: 75
15372037 CTTATGGGCA
* * * * * *
15372047 TCCCGTTATATGGCTCTCACGAGCTTCCCGATATTTGGCTCTTATGAGTTTCTTGATTAATGGCT
1 TCCCGTTATATGGCTCTCACGAGCTTCCCAATAATTGGCTCGTAAGAGCTTCTCGATTAATGGCT
15372112 CCCTTGAGCT
66 CCCTTGAGCT
*
15372122 TCCCGTT-TATGGCTCGT-ATGAGCTTCCCAATAATTGGCTCGTAAGAGCTTCTCG-TTATATGG
1 TCCCGTTATATGGCTC-TCACGAGCTTCCCAATAATTGGCTCGTAAGAGCTTCTCGATTA-ATGG
15372184 CTC
64 CTC
15372187 ACATGGTCAA
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
73 3 0.05
74 45 0.80
75 8 0.14
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (75 bp):
TCCCGTTATATGGCTCTCACGAGCTTCCCAATAATTGGCTCGTAAGAGCTTCTCGATTAATGGCT
CCCTTGAGCT
Found at i:15386914 original size:17 final size:17
Alignment explanation
Indices: 15386894--15386928 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
15386884 AATTTTAATT
**
15386894 ATAATAAAGTAAATAAA
1 ATAATAAAACAAATAAA
15386911 ATAATAAAACAAATAAA
1 ATAATAAAACAAATAAA
15386928 A
1 A
15386929 GGAAAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.20
Consensus pattern (17 bp):
ATAATAAAACAAATAAA
Found at i:15392921 original size:488 final size:488
Alignment explanation
Indices: 15391998--15392976 Score: 1609
Period size: 488 Copynumber: 2.0 Consensus size: 488
15391988 TCTGCCAAGG
*
15391998 TAACTCTGTGTTAACTCTCACTAAGTTCTTTTGAACTTAGTGTTATGTTTATGATTATGTTTCAG
1 TAACTCTATGTTAACTCTCACTAAGTTCTTTTGAACTTAGTGTTATGTTTATGATTATGTTTCAG
* *
15392063 GAAGTATAGTATGAGTTTGCGCCAAGAGGGACGACGCCAAAACTATGCCAATGAGGCGACAAATT
66 GAAGTATAGTACGAGTTTGCGCCAAGAGGGACGACGCCAAAACTATGCCAAGGAGGCGACAAATT
* *
15392128 GGGTTACTATACATATAATGGAAAAGTGGCGTATTGTAGGACTTTACCTTAAAAGTCAATTTTTA
131 GGGTTACTATACATACAATGAAAAAGTGGCGTATTGTAGGACTTTACCTTAAAAGTCAATTTTTA
*
15392193 GTAAATGTTTGTATTTTAATGAATTGTAATTGGTCCGATGTAATATTTTATTTCTAAAATACTTT
196 GTAAATGTTTGTATTGTAATGAATTGTAATTGGTCCGATGTAATATTTTATTTCTAAAATACTTT
*
15392258 CTATTGTTTCTTTAATATTAAGTTTTTAAATGAAATAATAATGAAAAATGTTTTAAGTATAGAAT
261 CTATTGTGTCTTTAATATTAAGTTTTTAAATGAAATAATAATGAAAAATGTTTTAAGTATAGAAT
* * * *
15392323 GTCTGTTAACTGTTTTGAAACTTTGTTATATATTGTTTGTGTAACACCCAAGATCCAAACTTGAT
326 GTCTATCAACTATTTTGAAACTTTGTTATATATTGTTTGTATAACACCCAAGATCCAAACTTGAT
* * *
15392388 GAATCGGGTCGAATTGAGGGCGTTACAAAGACTACCTCATATGAAGAATACACAAAAGCTCAATT
391 GAATCGGGTCGAATTAAGGGCGTCACAAAGACTACCTCATATGAAGAATACACAAAAGCTCAACT
* * * *
15392453 AGACTAATAAGTAGGAGAGCCTTTTCAAACTCA
456 AGACCAACAAGCAAGAGAGCCTTTTCAAACTCA
* *
15392486 TAACTCTATGTTAACTCTCACTAAGTTCTTTTGAACTTAGTGTTATGTTTTTGTTTATGTTTCAG
1 TAACTCTATGTTAACTCTCACTAAGTTCTTTTGAACTTAGTGTTATGTTTATGATTATGTTTCAG
* *
15392551 GAAGTATAGTACGAGTTTGCGCTAAGAGGGACGACGCCAAGACTATGCCAAGGAGGCGACAAATT
66 GAAGTATAGTACGAGTTTGCGCCAAGAGGGACGACGCCAAAACTATGCCAAGGAGGCGACAAATT
* * *
15392616 GGGTTATTATACATACAATGAAAAAGTGGCGTATTGTAGGACTTTACCTTAAGAGTCAGTTTTTA
131 GGGTTACTATACATACAATGAAAAAGTGGCGTATTGTAGGACTTTACCTTAAAAGTCAATTTTTA
*
15392681 GTAAATGTTTGTATTGTAATGAATTGTAATTGGTCTGATGTAATATTTTATTTCTAAAATACTTT
196 GTAAATGTTTGTATTGTAATGAATTGTAATTGGTCCGATGTAATATTTTATTTCTAAAATACTTT
*
15392746 CTATTGTGTCTTTGATATTAAGTTTTTAAATGAAATAATAATGAAAAATGTTTTAAGTATAGAAT
261 CTATTGTGTCTTTAATATTAAGTTTTTAAATGAAATAATAATGAAAAATGTTTTAAGTATAGAAT
* * *
15392811 GTCTATCAACTATTTTGAAATTTTGTTATATATTGTTTGTATAACACCCGAGATCCGAACTTGAT
326 GTCTATCAACTATTTTGAAACTTTGTTATATATTGTTTGTATAACACCCAAGATCCAAACTTGAT
* * * ** *
15392876 GAATCGGGTC-AGATTAAGGGTGTCATAAAGACTACCTCTTATGAAGAATACATGAAAGCTTAAC
391 GAATCGGGTCGA-ATTAAGGGCGTCACAAAGACTACCTCATATGAAGAATACACAAAAGCTCAAC
*
15392940 TAGACCAACAAGCAAGAGAGCTTTTTCAAACTCA
455 TAGACCAACAAGCAAGAGAGCCTTTTCAAACTCA
15392974 TAA
1 TAA
15392977 ACCTTCTTTT
Statistics
Matches: 453, Mismatches: 37, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
487 1 0.00
488 452 1.00
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (488 bp):
TAACTCTATGTTAACTCTCACTAAGTTCTTTTGAACTTAGTGTTATGTTTATGATTATGTTTCAG
GAAGTATAGTACGAGTTTGCGCCAAGAGGGACGACGCCAAAACTATGCCAAGGAGGCGACAAATT
GGGTTACTATACATACAATGAAAAAGTGGCGTATTGTAGGACTTTACCTTAAAAGTCAATTTTTA
GTAAATGTTTGTATTGTAATGAATTGTAATTGGTCCGATGTAATATTTTATTTCTAAAATACTTT
CTATTGTGTCTTTAATATTAAGTTTTTAAATGAAATAATAATGAAAAATGTTTTAAGTATAGAAT
GTCTATCAACTATTTTGAAACTTTGTTATATATTGTTTGTATAACACCCAAGATCCAAACTTGAT
GAATCGGGTCGAATTAAGGGCGTCACAAAGACTACCTCATATGAAGAATACACAAAAGCTCAACT
AGACCAACAAGCAAGAGAGCCTTTTCAAACTCA
Found at i:15394470 original size:49 final size:49
Alignment explanation
Indices: 15394398--15394542 Score: 218
Period size: 49 Copynumber: 3.0 Consensus size: 49
15394388 TTCAAGTGAC
* * *
15394398 AAGTGACAAGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGT
1 AAGTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGT
*
15394447 AAGTGATATGTGATTTCGTGTAAGACCATAGCTGGGCTATGGCATCGGT
1 AAGTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGT
* * * *
15394496 ATGTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 AAGTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCG
15394543 AGAAAACGAA
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 88 1.00
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.30
Consensus pattern (49 bp):
AAGTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGT
Found at i:15397749 original size:52 final size:49
Alignment explanation
Indices: 15397664--15398028 Score: 422
Period size: 46 Copynumber: 7.6 Consensus size: 49
15397654 TTTGAGTACT
* *
15397664 TCTGATCAAGTG---ATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCAGCTACACTTA
* * *
15397710 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCAGCTACACTTA
* *
15397762 TCTGATCAAGTG---ATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCAGCTACACTTA
15397808 TCTGATCAAGTGAC---AAAGTGATAAGTGATAGCTTCAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCAGCTACACTTA
*
15397854 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCAGCTACACTTA
*
15397906 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTC-GCT-TACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCAGCTACACTTA
* *
15397956 TCTGATCAAGAGAC---AAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCAGCTACACTTA
*
15398002 TCTGATCAAGAGAC---AAAGTGATAAGTG
1 TCTGATCAAGTGACAATAAAGTGATAAGTG
15398029 GCTACACTTA
Statistics
Matches: 289, Mismatches: 14, Indels: 32
0.86 0.04 0.10
Matches are distributed among these distances:
44 20 0.07
45 3 0.01
46 131 0.45
48 1 0.00
49 2 0.01
50 19 0.07
51 3 0.01
52 110 0.38
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (49 bp):
TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCAGCTACACTTA
Found at i:15397784 original size:98 final size:96
Alignment explanation
Indices: 15397664--15398028 Score: 481
Period size: 98 Copynumber: 3.7 Consensus size: 96
15397654 TTTGAGTACT
* *
15397664 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGT-
*
15397729 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
65 GAAAGTGATAAGTGATAGCTTC-GCTATACTTA
* *
15397762 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC-----
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
*
15397822 AAAGTGATAAGTGATAGCTTCAGCTACACTTA
66 AAAGTGATAAGTGATAGCTTC-GCTATACTTA
*
15397854 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 TCTGATCAAGTG---A-T--AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
15397919 CAAGTGAAAAGTGATAAGTGATAGCTTCGCT-TACTTA
60 CAAGTG-AAAGTGATAAGTGATAGCTTCGCTATACTTA
* * * *
15397956 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGAC-AAGT
15398021 GATAAGTG
65 GA-AAGTG
15398029 GCTACACTTA
Statistics
Matches: 239, Mismatches: 14, Indels: 29
0.85 0.05 0.10
Matches are distributed among these distances:
92 41 0.17
95 1 0.00
96 45 0.19
97 10 0.04
98 101 0.42
99 1 0.00
102 16 0.07
103 3 0.01
104 21 0.09
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (96 bp):
TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
AAAGTGATAAGTGATAGCTTCGCTATACTTA
Found at i:15398036 original size:37 final size:37
Alignment explanation
Indices: 15397992--15398137 Score: 233
Period size: 37 Copynumber: 4.0 Consensus size: 37
15397982 GATAGCTTTA
*
15397992 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
15398029 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
* *
15398066 GCTACACTTATGTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
15398103 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
15398138 ATCATACGTA
Statistics
Matches: 102, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 87 0.85
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:15398065 original size:148 final size:149
Alignment explanation
Indices: 15397664--15398017 Score: 449
Period size: 144 Copynumber: 2.4 Consensus size: 149
15397654 TTTGAGTACT
* * * * *
15397664 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
* * * *
15397729 GAAAGTGATAAGTAATAGCTTC-G---GCTATACTTATC---TGATCAAGTGATAAAGTGATAAG
66 GAAAGTGATAACT-ATAGCTTCAGCAAACTAAACTGATCAAGTGA-CAAGTGATAAAGTGATAAG
15397787 TGATAGCTTCGGCTATACTTA
129 TGATAGCTTCGGCTATACTTA
* *
15397808 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
* * * * *
15397873 GAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA-AAAGTGATAAG
66 GAAAGTGATAACT-ATAGCTTCAGC-AAACTAAACTGATCAAGTGACAAGTGATAAAGTGATAAG
15397937 TGATAGCTTC-GCT-TACTTA
129 TGATAGCTTCGGCTATACTTA
*
15397956 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAA
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAA
15398018 AGTGATAAGT
Statistics
Matches: 190, Mismatches: 12, Indels: 12
0.89 0.06 0.06
Matches are distributed among these distances:
144 83 0.44
145 1 0.01
148 65 0.34
149 10 0.05
150 21 0.11
151 7 0.04
152 3 0.02
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (149 bp):
TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
GAAAGTGATAACTATAGCTTCAGCAAACTAAACTGATCAAGTGACAAGTGATAAAGTGATAAGTG
ATAGCTTCGGCTATACTTA
Found at i:15399453 original size:49 final size:49
Alignment explanation
Indices: 15399392--15399535 Score: 225
Period size: 49 Copynumber: 2.9 Consensus size: 49
15399382 ATGTGAACAT
*
15399392 GTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGA-TATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* *
15399442 GTGATATGTGATTTCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* * *
15399491 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCG
15399536 AGAAAACGAA
Statistics
Matches: 88, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
49 84 0.95
50 4 0.05
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.32
Consensus pattern (49 bp):
GTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
Found at i:15402743 original size:52 final size:49
Alignment explanation
Indices: 15402658--15403024 Score: 440
Period size: 46 Copynumber: 7.6 Consensus size: 49
15402648 TTTGAGTACT
* **
15402658 TCTGATCAAGTG---ATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
15402704 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
15402756 TCTGATCAAGTG---ATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
15402802 TCTGATCAAGTGAC---AAAGTGATAAGTGATAGCTTCAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
15402848 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
15402900 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
* **
15402952 TCTGATCAAGAGAC---AAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
15402998 TCTGATCAAGAGAC---AAAGTGATAAGTG
1 TCTGATCAAGTGACAATAAAGTGATAAGTG
15403025 GCTACACTTA
Statistics
Matches: 292, Mismatches: 15, Indels: 28
0.87 0.04 0.08
Matches are distributed among these distances:
46 155 0.53
48 1 0.00
49 2 0.01
50 1 0.00
52 133 0.46
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (49 bp):
TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
Found at i:15402778 original size:98 final size:97
Alignment explanation
Indices: 15402658--15403024 Score: 501
Period size: 98 Copynumber: 3.7 Consensus size: 97
15402648 TTTGAGTACT
* *
15402658 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGT-
*
15402723 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
65 GAAAGTGATAAGTGATAGCTTCGGCTATACTTA
* *
15402756 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC-----
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* *
15402816 AAAGTGATAAGTGATAGCTTCAGCTACACTTA
66 AAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
15402848 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 TCTGATCAAGTG---A-T--AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
15402913 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
60 CAAGTG-AAAGTGATAAGTGATAGCTTCGGCTATACTTA
* * * *
15402952 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGAC-AAGT
15403017 GATAAGTG
65 GA-AAGTG
15403025 GCTACACTTA
Statistics
Matches: 240, Mismatches: 15, Indels: 27
0.85 0.05 0.10
Matches are distributed among these distances:
92 41 0.17
95 1 0.00
96 1 0.00
98 145 0.60
99 10 0.04
101 1 0.00
104 41 0.17
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (97 bp):
TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
AAAGTGATAAGTGATAGCTTCGGCTATACTTA
Found at i:15403006 original size:196 final size:196
Alignment explanation
Indices: 15402672--15403024 Score: 607
Period size: 196 Copynumber: 1.8 Consensus size: 196
15402662 ATCAAGTGAT
* * *
15402672 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
* * * *
15402737 ATAGCTTCGGCTATACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
*
15402802 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
131 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
15402867 G
196 G
* *
15402868 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
*
15402933 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
66 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
15402998 TCTGATCAAGAGACAAAGTGATAAGTG
131 TCTGATCAAGAGACAAAGTGATAAGTG
15403025 GCTACACTTA
Statistics
Matches: 146, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
196 146 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (196 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
G
Found at i:15403032 original size:37 final size:37
Alignment explanation
Indices: 15402988--15403133 Score: 224
Period size: 37 Copynumber: 4.0 Consensus size: 37
15402978 GATAGCTTTA
*
15402988 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
15403025 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
* * *
15403062 GCTACACTTATGTGATCAAGAAACAAAATGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
15403099 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
15403134 ATCATACGTA
Statistics
Matches: 100, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
35 10 0.10
36 4 0.04
37 86 0.86
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:15403061 original size:150 final size:149
Alignment explanation
Indices: 15402658--15403013 Score: 467
Period size: 150 Copynumber: 2.4 Consensus size: 149
15402648 TTTGAGTACT
* * * * *
15402658 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
* * * *
15402723 GAAAGTGATAAGTAATAGCTTC-G---GCTATACTTATC---TGATCAAGTGATAAAGTGATAAG
66 GAAAGTGATAACT-ATAGCTTCAGCAAACTAAACTGATCAAGTGA-CAAGTGATAAAGTGATAAG
15402781 TGATAGCTTCGGCTATACTTA
129 TGATAGCTTCGGCTATACTTA
* *
15402802 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
* * * * *
15402867 GAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA-AAAGTGATAAG
66 GAAAGTGATAACT-ATAGCTTCAGC-AAACTAAACTGATCAAGTGACAAGTGATAAAGTGATAAG
15402931 TGATAGCTTCGGCTATACTTA
129 TGATAGCTTCGGCTATACTTA
*
15402952 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAA
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAA
15403014 AGTGATAAGT
Statistics
Matches: 192, Mismatches: 12, Indels: 10
0.90 0.06 0.05
Matches are distributed among these distances:
144 83 0.43
145 1 0.01
149 7 0.04
150 91 0.47
151 7 0.04
152 3 0.02
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.29
Consensus pattern (149 bp):
TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
GAAAGTGATAACTATAGCTTCAGCAAACTAAACTGATCAAGTGACAAGTGATAAAGTGATAAGTG
ATAGCTTCGGCTATACTTA
Found at i:15403077 original size:150 final size:143
Alignment explanation
Indices: 15402658--15403029 Score: 382
Period size: 144 Copynumber: 2.6 Consensus size: 143
15402648 TTTGAGTACT
* * * * *
15402658 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGAC-----
* * * * * * *
15402723 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTG---A-T--AAAGTGATAAGT
61 GAAAGTGATAAGT--GAGCTACGACTACACTGATCAGAACAAGTGACAAGTGAAAAGTGATAAGT
15402782 GATAGCTTCGGCTATACTTA
124 GATAGCTTCGGCTATACTTA
* *
15402802 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGAC-----
* * * * *
15402867 GAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGT
61 GAAAGTGATAAGTG--AGCTACGACTACACTGATCAGAACAAGTGACAAGTGAAAAGTGATAAGT
15402932 GATAGCTTCGGCTATACTTA
124 GATAGCTTCGGCTATACTTA
*
15402952 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC-AAAG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACGAAAG
15403016 TGATAAGTG-GCTAC
66 TGATAAGTGAGCTAC
15403030 ACTTATCTGA
Statistics
Matches: 211, Mismatches: 9, Indels: 19
0.88 0.04 0.08
Matches are distributed among these distances:
141 4 0.02
144 116 0.55
147 1 0.00
148 1 0.00
150 89 0.42
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (143 bp):
TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACGAAAG
TGATAAGTGAGCTACGACTACACTGATCAGAACAAGTGACAAGTGAAAAGTGATAAGTGATAGCT
TCGGCTATACTTA
Found at i:15403993 original size:17 final size:17
Alignment explanation
Indices: 15403960--15403993 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
15403950 TAAAGTTTCA
**
15403960 TGTCATTTTTATTTAAT
1 TGTCATTTTTAACTAAT
15403977 TGTCATTTTTAACTAAT
1 TGTCATTTTTAACTAAT
15403994 GTGGTAATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.26, C:0.09, G:0.06, T:0.59
Consensus pattern (17 bp):
TGTCATTTTTAACTAAT
Found at i:15405837 original size:3 final size:3
Alignment explanation
Indices: 15405829--15405853 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
15405819 TACGCAAAAC
15405829 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
15405854 CAAAATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:15410991 original size:19 final size:20
Alignment explanation
Indices: 15410949--15410993 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
15410939 GAAAAATGAT
* * *
15410949 TTCTAGAAATTGATTTATTT
1 TTCTGGAAATTGATTTACTC
15410969 TTCTGGAAA-TGATTTACTC
1 TTCTGGAAATTGATTTACTC
15410988 TTCTGG
1 TTCTGG
15410994 TGTTTCAATG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.24, C:0.11, G:0.16, T:0.49
Consensus pattern (20 bp):
TTCTGGAAATTGATTTACTC
Found at i:15415231 original size:19 final size:19
Alignment explanation
Indices: 15415185--15415232 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
15415175 GTATATATTT
*
15415185 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGAAGA
*
15415203 TAAATCTTATTTAGGAAGA
1 TAAATTTTATTTAGGAAGA
15415222 TAAATTTTATT
1 TAAATTTTATT
15415233 CAGATTCTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.46
Consensus pattern (19 bp):
TAAATTTTATTTAGGAAGA
Found at i:15417847 original size:24 final size:24
Alignment explanation
Indices: 15417820--15417970 Score: 239
Period size: 24 Copynumber: 6.2 Consensus size: 24
15417810 AAAGGCAATG
*
15417820 CTTTTAATAACTGGGGCAAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
15417844 CTTTTAATAACTGGGGTATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* *
15417868 CTTTTAATAACTGAGGCATAATCC
1 CTTTTAATAACTGGGGCATAAGCC
15417892 CTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
15417916 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
15417940 CTTTTTTAATAACTGGGGCATAAGCC
1 C--TTTTAATAACTGGGGCATAAGCC
15417966 CTTTT
1 CTTTT
15417971 GCACTTCCTC
Statistics
Matches: 116, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
24 93 0.80
26 23 0.20
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.32
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:15418034 original size:11 final size:11
Alignment explanation
Indices: 15418018--15418075 Score: 61
Period size: 11 Copynumber: 5.6 Consensus size: 11
15418008 ATTTATGAAT
15418018 ATATCATGTGC
1 ATATCATGTGC
*
15418029 ATATCA--TAC
1 ATATCATGTGC
15418038 ATATCATGTGC
1 ATATCATGTGC
*
15418049 ATATCA--TAC
1 ATATCATGTGC
*
15418058 ATGTCATGTGC
1 ATATCATGTGC
15418069 ATATCAT
1 ATATCAT
15418076 ACATACCATG
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
9 15 0.41
11 22 0.59
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (11 bp):
ATATCATGTGC
Found at i:15418043 original size:20 final size:20
Alignment explanation
Indices: 15418018--15418086 Score: 120
Period size: 20 Copynumber: 3.5 Consensus size: 20
15418008 ATTTATGAAT
15418018 ATATCATGTGCATATCATAC
1 ATATCATGTGCATATCATAC
15418038 ATATCATGTGCATATCATAC
1 ATATCATGTGCATATCATAC
*
15418058 ATGTCATGTGCATATCATAC
1 ATATCATGTGCATATCATAC
*
15418078 ATACCATGT
1 ATATCATGT
15418087 TTATCAAAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
ATATCATGTGCATATCATAC
Found at i:15426133 original size:24 final size:24
Alignment explanation
Indices: 15426082--15426204 Score: 149
Period size: 24 Copynumber: 5.0 Consensus size: 24
15426072 ACTTTATCAT
*
15426082 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
15426107 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
15426131 ATAACTGGGGCATAAGCCTTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
15426155 ATAACTGGGGCATAAGCCCTTTTTTTA
1 ATAACTGGGGCATAAGCCC---TTTTA
*
15426182 ATAACTGGAGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
15426205 GCACTTCCTC
Statistics
Matches: 86, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
24 52 0.60
25 12 0.14
27 22 0.26
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:15426172 original size:48 final size:49
Alignment explanation
Indices: 15426082--15426205 Score: 153
Period size: 51 Copynumber: 2.5 Consensus size: 49
15426072 ACTTTATCAT
* *
15426082 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCC-TTTTA
1 ATAACTGG-GGCATAAGCCT-TTTTGATAACTGGGGCAAAAGCCCTTTTTA
*
15426131 ATAACTGGGGCATAAGCCTTTTTGATAACTGGGGCATAAGCCCTTTTTTTA
1 ATAACTGGGGCATAAGCCTTTTTGATAACTGGGGCAAAAGCCC--TTTTTA
* *
15426182 ATAACTGGAGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCTTTTTG
15426206 CACTTCCTCC
Statistics
Matches: 66, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
48 26 0.39
49 13 0.20
51 27 0.41
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.31
Consensus pattern (49 bp):
ATAACTGGGGCATAAGCCTTTTTGATAACTGGGGCAAAAGCCCTTTTTA
Found at i:15426279 original size:20 final size:20
Alignment explanation
Indices: 15426254--15426320 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
15426244 TTATGAATAC
*
15426254 ATCATGTGTATATCATACAT
1 ATCATGTGCATATCATACAT
15426274 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
15426294 GTTATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
15426314 ACCATGT
1 ATCATGT
15426321 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:15432029 original size:68 final size:64
Alignment explanation
Indices: 15431822--15432074 Score: 194
Period size: 68 Copynumber: 3.8 Consensus size: 64
15431812 TATAATTTTG
* * *
15431822 GCTCTCTTGTACACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTA-TCTCGT
1 GCTCTCTTGTACACATGGTGTACAC-TAGTACCACCCATGCGACCTAGCTACA-TATATTCTCGT
15431884 A
64 A
* * * ** *
15431885 GCTCTCTTGT-CTACATGGTGTCCTTCACCTGGAACCATGCATGCGACATAGCTACATATA-TCT
1 GCTCTCTTGTAC-ACATGGTG---TACA-CTAGTACCACCCATGCGACCTAGCTACATATATTCT
15431948 CGTA
61 CGTA
*
15431952 GCTCTCTTGT-CTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCT
1 GCTCTCTTGTAC-ACATGGTGTACAC-TAGTACCACCCATGCGACCTAGCTACAT-AT-AT-TCT
15432016 CGTA
61 CGTA
* * * * ** *
15432020 GCTCTCTTGTACACATGATGTGCACTCAGCATCATACATGTGACCTAGCTACATA
1 GCTCTCTTGTACACATGGTGTACACT-AGTACCACCCATGCGACCTAGCTACATA
15432075 CCATCTGTAT
Statistics
Matches: 154, Mismatches: 22, Indels: 24
0.77 0.11 0.12
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 25 0.16
65 2 0.01
66 20 0.13
67 33 0.21
68 53 0.34
69 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (64 bp):
GCTCTCTTGTACACATGGTGTACACTAGTACCACCCATGCGACCTAGCTACATATATTCTCGTA
Found at i:15432573 original size:30 final size:30
Alignment explanation
Indices: 15432539--15432599 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
15432529 TCCTTAACTC
15432539 AAACTTTTGCAAAATTACAATTTTACCCCT
1 AAACTTTTGCAAAATTACAATTTTACCCCT
* * * *
15432569 AAACTTTTGCATATTTACACTTTTTCCCCT
1 AAACTTTTGCAAAATTACAATTTTACCCCT
15432599 A
1 A
15432600 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.25, G:0.03, T:0.41
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTACCCCT
Found at i:15435998 original size:19 final size:19
Alignment explanation
Indices: 15435970--15436028 Score: 72
Period size: 19 Copynumber: 3.3 Consensus size: 19
15435960 ATAAAAATAT
15435970 AAAA-TATAAAAATTCAAA
1 AAAATTATAAAAATTCAAA
15435988 AAAATTATAAAAA-TCATAA
1 AAAATTATAAAAATTCA-AA
*
15436007 AAAATTAT-TAAATT-AAA
1 AAAATTATAAAAATTCAAA
15436024 AAAAT
1 AAAAT
15436029 CAAAACTTCT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
17 7 0.19
18 11 0.30
19 19 0.51
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.27
Consensus pattern (19 bp):
AAAATTATAAAAATTCAAA
Found at i:15435999 original size:9 final size:9
Alignment explanation
Indices: 15435960--15436028 Score: 56
Period size: 10 Copynumber: 7.9 Consensus size: 9
15435950 ATCCTGTCAA
15435960 ATAAAAA-T
1 ATAAAAATT
15435968 AT-AAAA-T
1 ATAAAAATT
15435975 ATAAAAATT
1 ATAAAAATT
*
15435984 CAAAAAAATT
1 -ATAAAAATT
*
15435994 ATAAAAATC
1 ATAAAAATT
15436003 ATAAAAAATT
1 AT-AAAAATT
*
15436013 AT-TAAATT
1 ATAAAAATT
*
15436021 AAAAAAAT
1 ATAAAAAT
15436029 CAAAACTTCT
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
7 7 0.14
8 12 0.24
9 14 0.29
10 16 0.33
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (9 bp):
ATAAAAATT
Found at i:15443080 original size:30 final size:31
Alignment explanation
Indices: 15443028--15443086 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 31
15443018 GTTTTCAATT
* *
15443028 TGTTTTATTTTATTTATGATTTA-TCCCTGA
1 TGTTTTATTTTAGTTATAATTTAGTCCCTGA
* *
15443058 TGTTTTGTTTTAGTTCTAATTTAGTCCCT
1 TGTTTTATTTTAGTTATAATTTAGTCCCT
15443087 ACAGTATCTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.17, C:0.12, G:0.12, T:0.59
Consensus pattern (31 bp):
TGTTTTATTTTAGTTATAATTTAGTCCCTGA
Found at i:15443352 original size:34 final size:30
Alignment explanation
Indices: 15443315--15443417 Score: 107
Period size: 32 Copynumber: 3.2 Consensus size: 30
15443305 AACCTTACTT
15443315 TTATATTATATAAATTATTTTATATATGTATTA
1 TTATATTATAT--ATTATTTTATATAT-TATTA
* *
15443348 TTTATATTATCTATTATTTTTCATAAATTATTA
1 -TTATATTATATATTA-TTTT-ATATATTATTA
* *
15443381 TTATTTTACATCATTATTTTATATATTATTA
1 TTATATTATAT-ATTATTTTATATATTATTA
15443412 TTATAT
1 TTATAT
15443418 CTTTACTTGT
Statistics
Matches: 59, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
31 15 0.25
32 16 0.27
33 13 0.22
34 15 0.25
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.60
Consensus pattern (30 bp):
TTATATTATATATTATTTTATATATTATTA
Found at i:15443415 original size:13 final size:13
Alignment explanation
Indices: 15443318--15443446 Score: 76
Period size: 13 Copynumber: 9.9 Consensus size: 13
15443308 CTTACTTTTA
*
15443318 TATTA-TATAAAT
1 TATTATTATATAT
15443330 TATT-TTATATAT
1 TATTATTATATAT
15443342 GTATTATT-TATAT
1 -TATTATTATATAT
*
15443355 TATCTATTAT-TTT
1 TAT-TATTATATAT
*
15443368 TCATAAATTAT-TAT
1 T-AT-TATTATATAT
*
15443382 TATT-TTACATCAT
1 TATTATTATAT-AT
15443395 TATT-TTATATAT
1 TATTATTATATAT
*
15443407 TATTATTATATCTT
1 TATTATTATAT-AT
*
15443421 TACTTGTTATATAT
1 TA-TTATTATATAT
15443435 TAATTATT-TATA
1 T-ATTATTATATA
15443447 CACATTGTCT
Statistics
Matches: 93, Mismatches: 12, Indels: 23
0.73 0.09 0.18
Matches are distributed among these distances:
11 3 0.03
12 20 0.22
13 39 0.42
14 22 0.24
15 9 0.10
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.60
Consensus pattern (13 bp):
TATTATTATATAT
Found at i:15455605 original size:119 final size:119
Alignment explanation
Indices: 15455394--15455885 Score: 833
Period size: 119 Copynumber: 4.1 Consensus size: 119
15455384 TAAGCCATAG
15455394 CATAGCAGATTTGACTCTCAGACGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTATACTG
1 CATAGCAGATTTGACTCTCAGACGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTATACTG
* * * *
15455459 AAACAGATCCAAGGTGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGA
66 AAGCAAATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGA
*
15455513 CATAGCAGATTTGACTCTCAGACGTTCTCAGATATAGCAGATTTAACCTTCAGATGTTTATACTG
1 CATAGCAGATTTGACTCTCAGACGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTATACTG
15455578 AAGCAAATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGA
66 AAGCAAATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGA
* * * *
15455632 CATAGCAAATTTGACTCTCAGATGTTCTCAGATATAACAGATCTAACCTTCAGATGTTTAGACTG
1 CATAGCAGATTTGACTCTCAGACGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTATACTG
* * *
15455697 AAGCAGATCCAAGATGATTTGGTATTCTTGTG-TTACAAGGAACACATCGAGGA
66 AAGCAAATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGA
* *
15455750 CATAGCAGATTTGACTCTCAGATGTTCTCAAATATAGCAGATCTAACCTTCAGATGTTTATACTG
1 CATAGCAGATTTGACTCTCAGACGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTATACTG
*
15455815 AAGCAAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGAAACAAATCGAGGA
66 AAGCAA-ATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGA
15455870 CATAGCAGATTTGACT
1 CATAGCAGATTTGACT
15455886 TTCAAATGTT
Statistics
Matches: 350, Mismatches: 21, Indels: 3
0.94 0.06 0.01
Matches are distributed among these distances:
118 85 0.24
119 230 0.66
120 35 0.10
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.30
Consensus pattern (119 bp):
CATAGCAGATTTGACTCTCAGACGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTATACTG
AAGCAAATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGA
Found at i:15457946 original size:13 final size:13
Alignment explanation
Indices: 15457859--15457977 Score: 72
Period size: 13 Copynumber: 9.1 Consensus size: 13
15457849 ATTATATAAA
15457859 ATTATT-TTATAT
1 ATTATTATTATAT
15457871 ATGTATTATT-TAT
1 AT-TATTATTATAT
15457884 ATTATCTATTAT-T
1 ATTAT-TATTATAT
* *
15457897 TTTCATAAATTAT-T
1 ATT-AT-TATTATAT
*
15457911 ATTATT-TTACAT
1 ATTATTATTATAT
15457923 CATTATT-TTATAT
1 -ATTATTATTATAT
15457936 ATTATTATTATAT
1 ATTATTATTATAT
* *
15457949 CTTTACTTGTTATAT
1 -ATTA-TTATTATAT
15457964 ATTAATTATT-TAT
1 ATT-ATTATTATAT
15457977 A
1 A
15457978 CACATTGTCT
Statistics
Matches: 85, Mismatches: 11, Indels: 21
0.73 0.09 0.18
Matches are distributed among these distances:
11 3 0.04
12 12 0.14
13 39 0.46
14 22 0.26
15 9 0.11
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.61
Consensus pattern (13 bp):
ATTATTATTATAT
Found at i:15461134 original size:48 final size:48
Alignment explanation
Indices: 15461074--15461170 Score: 178
Period size: 48 Copynumber: 2.0 Consensus size: 48
15461064 ATAGTGTATT
15461074 GGTTCTTCACTTTTGGTTTACTTGACCCATCAGTACAAT-TAACTTCGG
1 GGTTCTTCACTTTTGGTTTACTTGACCCATCAGTAC-ATGTAACTTCGG
15461122 GGTTCTTCACTTTTGGTTTACTTGACCCATCAGTACATGTAACTTCGG
1 GGTTCTTCACTTTTGGTTTACTTGACCCATCAGTACATGTAACTTCGG
15461170 G
1 G
15461171 CTTGGTCCAA
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
47 2 0.04
48 46 0.96
ACGTcount: A:0.20, C:0.23, G:0.19, T:0.39
Consensus pattern (48 bp):
GGTTCTTCACTTTTGGTTTACTTGACCCATCAGTACATGTAACTTCGG
Found at i:15461196 original size:15 final size:15
Alignment explanation
Indices: 15461176--15461205 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
15461166 TCGGGCTTGG
15461176 TCCAACCTTCCTCAA
1 TCCAACCTTCCTCAA
15461191 TCCAACCTTCCTCAA
1 TCCAACCTTCCTCAA
15461206 CTACTTCCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.47, G:0.00, T:0.27
Consensus pattern (15 bp):
TCCAACCTTCCTCAA
Found at i:15464521 original size:12 final size:12
Alignment explanation
Indices: 15464504--15464528 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15464494 ATTAATGTAA
15464504 AATTATTTTGTT
1 AATTATTTTGTT
15464516 AATTATTTTGTT
1 AATTATTTTGTT
15464528 A
1 A
15464529 GTAATTTATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (12 bp):
AATTATTTTGTT
Found at i:15464557 original size:65 final size:66
Alignment explanation
Indices: 15464477--15464609 Score: 200
Period size: 65 Copynumber: 2.0 Consensus size: 66
15464467 TTAGTGTTTT
* *
15464477 GTGTTTTGTAATTTTTTATTAATGTAAAATTATTTTGTTA-A-TTATTTTGTTAGTAATTTATG-
1 GTGTTTTGTAATTTTTTAGTAATGTAAAA-TATTTT-TTATAGTTATTTTGTTAGCAATTTATGA
15464539 TTA
64 TTA
*
15464542 GTGTTTTGTGATTTTTTAGTAATGTAAAATATTTTTTATAGTTATTTTGTTAGCAATTTATGATT
1 GTGTTTTGTAATTTTTTAGTAATGTAAAATATTTTTTATAGTTATTTTGTTAGCAATTTATGATT
15464607 A
66 A
15464608 GT
1 GT
15464610 TTATAAATTG
Statistics
Matches: 62, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
63 3 0.05
64 7 0.11
65 47 0.76
66 5 0.08
ACGTcount: A:0.27, C:0.01, G:0.14, T:0.58
Consensus pattern (66 bp):
GTGTTTTGTAATTTTTTAGTAATGTAAAATATTTTTTATAGTTATTTTGTTAGCAATTTATGATT
A
Found at i:15464642 original size:88 final size:91
Alignment explanation
Indices: 15464542--15464733 Score: 246
Period size: 98 Copynumber: 2.1 Consensus size: 91
15464532 ATTTATGTTA
* *
15464542 GTGTTTTGTGATTTTTTAGTAATGTAAA-ATATTT-T-TTATAGTTATTTTGTTAGCAATTTATG
1 GTGTTTCGTGATTTATTAGTAATGTAAATATATTTATGTTATAGTTATTTTGTTAGCAATTTATG
*
15464604 ATTAGTTTATAAATTGTTGGTGTTTT
66 ATTAGTTTATAAATTGTTAGTGTTTT
* * *
15464630 GTGTTTCGTGATTTATTAGTAATGTAAATTCTTTTTGAAAAAATGTTATAGTTATTTTGTTAGTA
1 GTGTTTCGTGATTTATTAGTAATGTAAA-TATATTT------ATGTTATAGTTATTTTGTTAGCA
15464695 ATTTATGATTAGTTTATAAATTGTTAGTGTTTT
59 ATTTATGATTAGTTTATAAATTGTTAGTGTTTT
15464728 GTGTTT
1 GTGTTT
15464734 TGTTGTAATA
Statistics
Matches: 88, Mismatches: 6, Indels: 10
0.85 0.06 0.10
Matches are distributed among these distances:
88 26 0.30
90 4 0.05
97 1 0.01
98 57 0.65
ACGTcount: A:0.26, C:0.02, G:0.17, T:0.55
Consensus pattern (91 bp):
GTGTTTCGTGATTTATTAGTAATGTAAATATATTTATGTTATAGTTATTTTGTTAGCAATTTATG
ATTAGTTTATAAATTGTTAGTGTTTT
Found at i:15466398 original size:21 final size:22
Alignment explanation
Indices: 15466366--15466419 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 22
15466356 ATTATTTTAT
* *
15466366 TATTAT-TATATTT-TTACTTG
1 TATTATATATATTTATTAATTA
15466386 TATTATATATATTTATTAATTA
1 TATTATATATATTTATTAATTA
15466408 T-TTATATATATT
1 TATTATATATATT
15466420 GTTTTTACAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 6 0.20
21 18 0.60
22 6 0.20
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (22 bp):
TATTATATATATTTATTAATTA
Found at i:15470543 original size:14 final size:14
Alignment explanation
Indices: 15470524--15470550 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15470514 AAGATATTCT
15470524 TTTTCTAAATAAAA
1 TTTTCTAAATAAAA
15470538 TTTTCTAAATAAA
1 TTTTCTAAATAAA
15470551 GTTGAACCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.44
Consensus pattern (14 bp):
TTTTCTAAATAAAA
Found at i:15470593 original size:14 final size:16
Alignment explanation
Indices: 15470574--15470610 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
15470564 CGATATCCTT
15470574 TTTGCAT-TCAT-GCA
1 TTTGCATCTCATAGCA
15470588 TTTGCATCTCATAGCA
1 TTTGCATCTCATAGCA
15470604 TTT-CATC
1 TTTGCATC
15470611 ACATCGTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 8 0.38
16 6 0.29
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.43
Consensus pattern (16 bp):
TTTGCATCTCATAGCA
Found at i:15470610 original size:15 final size:15
Alignment explanation
Indices: 15470574--15470623 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
15470564 CGATATCCTT
15470574 TTTGCAT-TCATGCA
1 TTTGCATCTCATGCA
15470588 TTTGCATCTCATAGCA
1 TTTGCATCTCAT-GCA
* *
15470604 TTT-CATCACAT-CG
1 TTTGCATCTCATGCA
15470617 TTTGCAT
1 TTTGCAT
15470624 TCAAAGTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 4 0.13
14 10 0.32
15 11 0.35
16 6 0.19
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.42
Consensus pattern (15 bp):
TTTGCATCTCATGCA
Found at i:15479015 original size:206 final size:205
Alignment explanation
Indices: 15478601--15479302 Score: 1052
Period size: 204 Copynumber: 3.4 Consensus size: 205
15478591 TAGGCCACAG
* * * *
15478601 CATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATTCAGGATGGTTTGGTATCCTTGTA
1 CATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGTACCCTTGTG
15478666 CTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCT
66 CTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCT
* * * * **
15478731 AAGATGATTTGTCATCTCTGAATTGTCAGAGAATAAATCGAAGTCTGGCATCTCCACTTCAATGG
131 AAGATGATTTGGCATCTCTGTATTGTCAGAGAATGAATCGAAGTCTGGCATCTTCACTTTGAT-G
*
15478796 AA-AGTAGATA
195 AAGAGCAGATA
* * * * * * * *
15478806 CATAGCAGATCTGACCTTTAGACGATTA-GATTGAAGCAAGATCCAAGATGATTTGGCATCCTTG
1 CATAGCAGATCTCACCTTCAGATGTTTATG-CTGAAGC-AGATCCAAGATGGTTTGGTACCCTTG
* *
15478870 TGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAAT
64 TGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAAT
15478935 CTAAGATGATTTGGCATCTCTGTATTGTCAGAGAATGAATCGAAGTCTGGCATCTTCACTTTGAT
129 CTAAGATGATTTGGCATCTCTGTATTGTCAGAGAATGAATCGAAGTCTGGCATCTTCACTTTGAT
*
15479000 GAAGAGCATATA
194 GAAGAGCAGATA
* *
15479012 CATAGCAGATCTCGCCTTCGGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGTACCCTTGTG
1 CATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGTACCCTTGTG
*
15479077 CTTACAAGGAAC-AATCGAAGACATAGCAGATTTGGCTTTCACGTGTTTAC-ACTGAAGCAAATC
66 CTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGA-TGAAGCAAATC
* * *
15479140 TAAGATGATTTGGCATCTCTGTATTGTTAGAGAACGAATCGAAGTCTGGCTTCTTCACTTTGATG
130 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAATGAATCGAAGTCTGGCATCTTCACTTTGATG
*
15479205 GAGAGCAGATA
195 AAGAGCAGATA
* *
15479216 CATAGCAGATCTCACCTTCAGATGTTTATGCCGAAGCAAATCCAAGATGGTTTGGTACCCTTGTG
1 CATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGTACCCTTGTG
*
15479281 CTTACAATGAACAAATCGAAGA
66 CTTACAAGGAACAAATCGAAGA
15479303 AACAGATTTG
Statistics
Matches: 448, Mismatches: 43, Indels: 12
0.89 0.09 0.02
Matches are distributed among these distances:
203 1 0.00
204 191 0.43
205 78 0.17
206 177 0.40
207 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29
Consensus pattern (205 bp):
CATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGTACCCTTGTG
CTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCT
AAGATGATTTGGCATCTCTGTATTGTCAGAGAATGAATCGAAGTCTGGCATCTTCACTTTGATGA
AGAGCAGATA
Found at i:15482211 original size:55 final size:52
Alignment explanation
Indices: 15482072--15482222 Score: 176
Period size: 55 Copynumber: 2.8 Consensus size: 52
15482062 TAAATTGTAC
* *
15482072 AGCACTAAGTGTGCGATTCGATTATGTTGCACTAAGTGTGCGAAAGAATATG
1 AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAAGAATATG
* ** * **
15482124 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAATCTAACTATG
1 A-GCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAA-AGAA-TATG
* *
15482179 TAGCACTAAGGGTGCGATTTGATTACGTGGCACTAAGTGTGCGA
1 -AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGA
15482223 GTTGAGTGAA
Statistics
Matches: 81, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
52 1 0.01
53 37 0.46
54 2 0.02
55 40 0.49
56 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (52 bp):
AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAAGAATATG
Found at i:15482227 original size:27 final size:26
Alignment explanation
Indices: 15482073--15482227 Score: 132
Period size: 27 Copynumber: 5.7 Consensus size: 26
15482063 AAATTGTACA
* *
15482073 GCACTAAGTGTGCGATTCGATTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTG
** *
15482100 GCACTAAGTGTGCGAAAGAATATGAT-
1 GCACTAAGTGTGCGATTGACTATG-TG
* *
15482126 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTG
* *
15482153 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCG-AT-TGACTATGTG
* * *
15482181 GCACTAAGGGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTG
15482208 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGA-TTGA
15482228 GTGAATAGCA
Statistics
Matches: 104, Mismatches: 19, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
26 20 0.19
27 64 0.62
28 20 0.19
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTG
Found at i:15490295 original size:28 final size:27
Alignment explanation
Indices: 15490228--15490297 Score: 86
Period size: 28 Copynumber: 2.6 Consensus size: 27
15490218 GGAATATGAT
* *
15490228 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTAACCATGCA
* *
15490255 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TAACCATGCA
*
15490283 GCACTAAGGGTGCGA
1 GCACTAAGTGTGCGA
15490298 TTTGATTACG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 17 0.46
28 20 0.54
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTAACCATGCA
Found at i:15490313 original size:55 final size:53
Alignment explanation
Indices: 15490173--15490324 Score: 178
Period size: 55 Copynumber: 2.8 Consensus size: 53
15490163 TAAATTGTAC
* * *
15490173 AGCACTAAGTGTGCGATTCGATTATGTTGCACTAAGTGTGCGAAAGGAATATG
1 AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAACGAATATG
* ** * * *
15490226 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAATCTAACTATG
1 A-GCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAACGAA-TATG
* *
15490281 TAGCACTAAGGGTGCGATTTGATTACGTGGCACTAAGTGTGCGA
1 -AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGA
15490325 GTTGAGTGAA
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
53 1 0.01
54 39 0.48
55 40 0.49
56 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.27
Consensus pattern (53 bp):
AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAACGAATATG
Found at i:15490329 original size:27 final size:27
Alignment explanation
Indices: 15490174--15490329 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
15490164 AAATTGTACA
* *
15490174 GCACTAAGTGTGCG-ATTCGATTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
** *
15490201 GCACTAAGTGTGCGAAAGGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
15490228 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* *
15490255 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * * *
15490283 GCACTAAGGGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
15490310 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
15490330 GTGAATAGCA
Statistics
Matches: 105, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
27 82 0.78
28 23 0.22
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:15492536 original size:21 final size:22
Alignment explanation
Indices: 15492499--15492557 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
15492489 TCATTATTTT
15492499 ATTATTATTAT-TATATTT-TTA
1 ATTA-TATTATATATATTTATTA
* *
15492520 CTTGTATTATATATATTTATTA
1 ATTATATTATATATATTTATTA
15492542 ATTAT-TTATATATATT
1 ATTATATTATATATATT
15492558 GTTTTTACAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 6 0.19
21 20 0.62
22 6 0.19
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.63
Consensus pattern (22 bp):
ATTATATTATATATATTTATTA
Found at i:15492667 original size:30 final size:29
Alignment explanation
Indices: 15492627--15492701 Score: 80
Period size: 30 Copynumber: 2.6 Consensus size: 29
15492617 TATATTTAAA
*
15492627 TTATATTTTATTATATAACATTTATTATATT
1 TTAT-TTTTATTATATAACACTTATTAT-TT
* **
15492658 TTATTTTTATTCTATATTACTTATTATTT
1 TTATTTTTATTATATAACACTTATTATTT
*
15492687 TTCTTTTT-TTATATA
1 TTATTTTTATTATATA
15492702 TGTTATGTAT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
28 6 0.16
29 9 0.24
30 19 0.50
31 4 0.11
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (29 bp):
TTATTTTTATTATATAACACTTATTATTT
Found at i:15492766 original size:12 final size:12
Alignment explanation
Indices: 15492713--15492768 Score: 51
Period size: 12 Copynumber: 4.3 Consensus size: 12
15492703 GTTATGTATA
15492713 TCATATATATTA-
1 TCAT-TATATTAT
15492725 TCTATTATATTAT
1 TC-ATTATATTAT
*
15492738 TTATGTTTATATTAT
1 TCA---TTATATTAT
15492753 TCATTATATTAT
1 TCATTATATTAT
15492765 TCAT
1 TCAT
15492769 AATTTTAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
12 23 0.62
13 3 0.08
15 11 0.30
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.59
Consensus pattern (12 bp):
TCATTATATTAT
Done.