Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 48 of 290
Found at i:15494183 original size:98 final size:97
Alignment explanation
Indices: 15493997--15494186 Score: 303
Period size: 98 Copynumber: 1.9 Consensus size: 97
15493987 TTCTTTTTTT
* *
15493997 AAAAAATGTTATAGTTATTTTGTTAGTAATTTATGATTAGTTTATAAATTGTTAGTATTTAGTTT
1 AAAAAATGTTATAGTTATTTTGTTAGTAATTTATGATTAGTTTATAAATTGTTAGTATTTAATGT
15494062 AGGGTTTTGTGATTTTTTATAATGTAATTTAA
66 AGGGTTTTGTGATTTTTTATAATGTAATTTAA
*
15494094 AAAAAAT-TTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAAT
1 AAAAAATGTTATAGTTATTTTGTTAGTAATTTATGATTA-GTT-TATAAATTGTTAGTATTTAAT
*
15494158 GTAGTGTTTTGTGA-TTTTTATTAATGTAA
64 GTAGGGTTTTGTGATTTTTTA-TAATGTAA
15494187 ATTTTTTATA
Statistics
Matches: 86, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
96 31 0.36
97 16 0.19
98 39 0.45
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (97 bp):
AAAAAATGTTATAGTTATTTTGTTAGTAATTTATGATTAGTTTATAAATTGTTAGTATTTAATGT
AGGGTTTTGTGATTTTTTATAATGTAATTTAA
Found at i:15498677 original size:30 final size:31
Alignment explanation
Indices: 15498601--15498708 Score: 173
Period size: 31 Copynumber: 3.5 Consensus size: 31
15498591 ACAAATGACA
15498601 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
**
15498632 AGTGAAAAGTGGTAGCTTTTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
* *
15498663 AGTGAAAA-TGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
15498693 AGTGAAAAGTGGTAGC
1 AGTGAAAAGTGGTAGC
15498709 GAAAAGTGGT
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
30 27 0.38
31 44 0.62
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
Found at i:15498714 original size:13 final size:13
Alignment explanation
Indices: 15498696--15498721 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15498686 CCTGATCAGT
15498696 GAAAAGTGGTAGC
1 GAAAAGTGGTAGC
15498709 GAAAAGTGGTAGC
1 GAAAAGTGGTAGC
15498722 TCCGGCTACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.38, T:0.15
Consensus pattern (13 bp):
GAAAAGTGGTAGC
Found at i:15498728 original size:44 final size:43
Alignment explanation
Indices: 15498666--15498752 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 43
15498656 CCTGATCAGT
*
15498666 GAAAATGGTAGCTCCGGCTACCTGATCAGTGAAAAGTGGTAGC
1 GAAAATGGTAGCTCCGGCTACCTGATCAGTGAAAAATGGTAGC
15498709 GAAAAGTGGTAGCTCCGGCTACCTGATCAGTGAAAAATGGTAGC
1 GAAAA-TGGTAGCTCCGGCTACCTGATCAGTGAAAAATGGTAGC
15498753 TCCGGCTACC
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
43 5 0.12
44 37 0.88
ACGTcount: A:0.31, C:0.18, G:0.30, T:0.21
Consensus pattern (43 bp):
GAAAATGGTAGCTCCGGCTACCTGATCAGTGAAAAATGGTAGC
Found at i:15498779 original size:75 final size:74
Alignment explanation
Indices: 15498635--15498783 Score: 253
Period size: 75 Copynumber: 2.0 Consensus size: 74
15498625 CCTGATCAGT
***
15498635 GAAAAGTGGTAGCTTTTGCTACCTGATCAGTGAAAATGGTAGCTCCGGCTACCTGATCAGTGAAA
1 GAAAAGTGGTAGCTCCGGCTACCTGATCAGTGAAAATGGTAGCTCCGGCTACCTGATCAGTGAAA
15498700 AGTGGTAGC
66 AGTGGTAGC
15498709 GAAAAGTGGTAGCTCCGGCTACCTGATCAGTGAAAAATGGTAGCTCCGGCTACCTGATCAGTGAA
1 GAAAAGTGGTAGCTCCGGCTACCTGATCAGTG-AAAATGGTAGCTCCGGCTACCTGATCAGTGAA
*
15498774 TAGTGGTAGC
65 AAGTGGTAGC
15498784 TTCAGCTACA
Statistics
Matches: 70, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
74 29 0.41
75 41 0.59
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (74 bp):
GAAAAGTGGTAGCTCCGGCTACCTGATCAGTGAAAATGGTAGCTCCGGCTACCTGATCAGTGAAA
AGTGGTAGC
Found at i:15498792 original size:31 final size:31
Alignment explanation
Indices: 15498709--15498784 Score: 134
Period size: 31 Copynumber: 2.5 Consensus size: 31
15498699 AAGTGGTAGC
15498709 GAAAAGTGGTAGCTCCGGCTACCTGATCAGT
1 GAAAAGTGGTAGCTCCGGCTACCTGATCAGT
*
15498740 GAAAAATGGTAGCTCCGGCTACCTGATCAGT
1 GAAAAGTGGTAGCTCCGGCTACCTGATCAGT
*
15498771 GAATAGTGGTAGCT
1 GAAAAGTGGTAGCT
15498785 TCAGCTACAA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (31 bp):
GAAAAGTGGTAGCTCCGGCTACCTGATCAGT
Found at i:15498886 original size:46 final size:46
Alignment explanation
Indices: 15498819--15498939 Score: 163
Period size: 46 Copynumber: 2.6 Consensus size: 46
15498809 GTGATTTCCT
* * *
15498819 TATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTAT-G
1 TATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGAT-TCG
*
15498865 TATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATTCG
1 TATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATTCG
* * *
15498911 TGTAAGACCATAGCTGGGCTATGGCATCA
1 TATAAGACCATATCTGGGATATGGCATCA
15498940 TTATGTGAAG
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
45 1 0.01
46 66 0.99
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (46 bp):
TATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATTCG
Found at i:15500855 original size:13 final size:14
Alignment explanation
Indices: 15500839--15500867 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
15500829 TTATAAATAT
15500839 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
15500852 TTATAATGGTTTAA
1 TTATAATGGTTTAA
15500866 TT
1 TT
15500868 CATCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:15501313 original size:21 final size:21
Alignment explanation
Indices: 15501287--15501340 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
15501277 GATGTTGCAG
15501287 CGAGGGAGGCAGCAGCAACAA
1 CGAGGGAGGCAGCAGCAACAA
15501308 CGAGGGAGGCAGCAGCAACAA
1 CGAGGGAGGCAGCAGCAACAA
15501329 CGAGGGAGGCAG
1 CGAGGGAGGCAG
15501341 AGGCAGCAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.35, C:0.22, G:0.43, T:0.00
Consensus pattern (21 bp):
CGAGGGAGGCAGCAGCAACAA
Found at i:15501642 original size:31 final size:31
Alignment explanation
Indices: 15501606--15501671 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
15501596 TTTATTTTTT
15501606 ATGCTACATTTGTTGTTTTTGGTTGGATTCA
1 ATGCTACATTTGTTGTTTTTGGTTGGATTCA
* * *
15501637 ATGCTATATTTGTTGTTTTTTGTTGGATTTA
1 ATGCTACATTTGTTGTTTTTGGTTGGATTCA
15501668 ATGC
1 ATGC
15501672 AGGAAGGGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.17, C:0.08, G:0.21, T:0.55
Consensus pattern (31 bp):
ATGCTACATTTGTTGTTTTTGGTTGGATTCA
Found at i:15516034 original size:131 final size:130
Alignment explanation
Indices: 15515845--15516090 Score: 350
Period size: 131 Copynumber: 1.9 Consensus size: 130
15515835 AAATTTTATT
* * *
15515845 AAAACGAAGGTAATACTCGGTGCTTGGCAATTCGGGAATCGTGCCCCATCGTGTTGGGTTGCGAT
1 AAAACGAAGGTAATACTCGATGCTTGCCAATTCGGGAATCGTGCCCCATCGTGCTGGGTTGCGAT
* * * *
15515910 TT-CTCGTTTGTTCAAAATAATCAAATATTCGTTTGGAATTTCACTCATGTCTTTAAAAATTCTT
66 TTCCT-GTTTATTCAAAATAATCAAATATTCCTCTAGAATTTCACTCATGTCTTTAAAAATTCTT
15515974 C
130 C
** * * *
15515975 AAAACGAAGGTAATGTTCGATGTTTGCCCATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCGA
1 AAAACGAAGGTAATACTCGATGCTTGCCAATTC-GGGAATCGTGCCCCATCGTGCTGGGTTGCGA
*
15516040 TTTCCTGTTTATTCAAAATAATCGAATATTCCTCTAGAATTTCACTCATGT
65 TTTCCTGTTTATTCAAAATAATCAAATATTCCTCTAGAATTTCACTCATGT
15516091 TCTCTGAATT
Statistics
Matches: 101, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
130 27 0.27
131 72 0.71
132 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (130 bp):
AAAACGAAGGTAATACTCGATGCTTGCCAATTCGGGAATCGTGCCCCATCGTGCTGGGTTGCGAT
TTCCTGTTTATTCAAAATAATCAAATATTCCTCTAGAATTTCACTCATGTCTTTAAAAATTCTTC
Found at i:15517036 original size:15 final size:15
Alignment explanation
Indices: 15517016--15517069 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
15517006 AATTAGAAAA
15517016 TTTATTTTTTTATAT
1 TTTATTTTTTTATAT
* * *
15517031 TTTATTTTACCTGA-AA
1 TTTATTTT--TTTATAT
15517047 TTTATTTTTTTATAT
1 TTTATTTTTTTATAT
15517062 TTTATTTT
1 TTTATTTT
15517070 ACATGCGTAA
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
14 2 0.07
15 17 0.57
16 9 0.30
17 2 0.07
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.72
Consensus pattern (15 bp):
TTTATTTTTTTATAT
Found at i:15517048 original size:31 final size:31
Alignment explanation
Indices: 15517013--15517071 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
15517003 TTAAATTAGA
15517013 AAATTTATTTTTTTATATTTTATTTTACCTG
1 AAATTTATTTTTTTATATTTTATTTTACCTG
15517044 AAATTTATTTTTTTATATTTTATTTTAC
1 AAATTTATTTTTTTATATTTTATTTTAC
15517072 ATGCGTAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.66
Consensus pattern (31 bp):
AAATTTATTTTTTTATATTTTATTTTACCTG
Found at i:15519444 original size:132 final size:132
Alignment explanation
Indices: 15519192--15519446 Score: 332
Period size: 132 Copynumber: 1.9 Consensus size: 132
15519182 TCTCGCTTTG
* * * * * *
15519192 GAAAACGTGAATGAAATTCCAAAGGGATATTCGATTATTTTGCACAAACGAGAAATTACAACCCA
1 GAAAACATGAACGAAATTCCAAAGAGACATCCGATTATTTTGCACAAACAAGAAATTACAACCCA
* * * * * *
15519257 GCACGATAGGGCACGATTCCCCGAATTGCCGAACGTCGAATATTTCCTTCTTTTTAAATTTTTTT
66 GCACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATGTCCTCCGTTTTAAATTTTTTT
15519322 TA
131 TA
* ** * *
15519324 GAAAACATGAACGAAATTCTAAAGAGACATCCGATTATTTTGGGCAAACAAGAAATTGCAACCTA
1 GAAAACATGAACGAAATTCCAAAGAGACATCCGATTATTTTGCACAAACAAGAAATTACAACCCA
*
15519389 GCACGATAGGGCACGATTCCCCGAATTGCTAAACATCGAACATCGT-CTCCGTTTTAAA
66 GCACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACAT-GTCCTCCGTTTTAAA
15519447 GAATTTTTAA
Statistics
Matches: 104, Mismatches: 18, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
132 103 0.99
133 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (132 bp):
GAAAACATGAACGAAATTCCAAAGAGACATCCGATTATTTTGCACAAACAAGAAATTACAACCCA
GCACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATGTCCTCCGTTTTAAATTTTTTT
TA
Found at i:15519741 original size:3 final size:3
Alignment explanation
Indices: 15519733--15519767 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
15519723 ACAAACAATG
15519733 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
15519768 GCAATGATAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:15520405 original size:3 final size:3
Alignment explanation
Indices: 15520397--15520421 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
15520387 ATATATTAGG
15520397 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
15520422 GTAAAATCGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:15521382 original size:26 final size:26
Alignment explanation
Indices: 15521336--15521407 Score: 117
Period size: 26 Copynumber: 2.7 Consensus size: 26
15521326 AAAAAAAAAA
*
15521336 AACTTTCCTTTTTTTTATTCCATTACC
1 AACTTTCC-CTTTTTTATTCCATTACC
15521363 AACTTTCCCTTTTTTATTCCATTACC
1 AACTTTCCCTTTTTTATTCCATTACC
15521389 AACTTTCCCCTTTTTTATT
1 AACTTT-CCCTTTTTTATT
15521408 TTTTATTTTA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
26 23 0.53
27 20 0.47
ACGTcount: A:0.18, C:0.28, G:0.00, T:0.54
Consensus pattern (26 bp):
AACTTTCCCTTTTTTATTCCATTACC
Found at i:15522889 original size:22 final size:25
Alignment explanation
Indices: 15522846--15522890 Score: 69
Period size: 22 Copynumber: 1.9 Consensus size: 25
15522836 TTTTAGAAAT
15522846 TTTTTTATTCTTTAGAATTTTTAAC
1 TTTTTTATTCTTTAGAATTTTTAAC
15522871 TTTTTT-TT-TTTA-AATTTTTA
1 TTTTTTATTCTTTAGAATTTTTA
15522891 TAATTTTTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 8 0.40
23 4 0.20
24 2 0.10
25 6 0.30
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.71
Consensus pattern (25 bp):
TTTTTTATTCTTTAGAATTTTTAAC
Found at i:15523137 original size:30 final size:30
Alignment explanation
Indices: 15523038--15523137 Score: 83
Period size: 32 Copynumber: 3.2 Consensus size: 30
15523028 GAAGTTTACA
* * *
15523038 ATTTAATTTAACTATAACTAAAAATTCGAATT
1 ATTTAATTCAA-T-TAACTTAAAATTTGAATT
* * * * *
15523070 ACTTATTTGAATTAACTTAAAAAAATTGAATA
1 ATTTAATTCAATTAACTT--AAAATTTGAATT
15523102 ATTTAATTCAATTAACTTAAAATTTGAATT
1 ATTTAATTCAATTAACTTAAAATTTGAATT
*
15523132 TTTTAA
1 ATTTAA
15523138 AAAAAATTAA
Statistics
Matches: 53, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
30 20 0.38
31 1 0.02
32 32 0.60
ACGTcount: A:0.46, C:0.07, G:0.04, T:0.43
Consensus pattern (30 bp):
ATTTAATTCAATTAACTTAAAATTTGAATT
Found at i:15524228 original size:21 final size:21
Alignment explanation
Indices: 15524182--15524230 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
15524172 ATCATTAATT
** *
15524182 CTAATTTCATTGTTATAATAT
1 CTAATTTCACCGTTATAATAA
*
15524203 TTAATTTCACCGTTATAATAA
1 CTAATTTCACCGTTATAATAA
15524224 CTAATTT
1 CTAATTT
15524231 TACCATTGTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.35, C:0.12, G:0.04, T:0.49
Consensus pattern (21 bp):
CTAATTTCACCGTTATAATAA
Found at i:15524241 original size:24 final size:24
Alignment explanation
Indices: 15524189--15524242 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 24
15524179 ATTCTAATTT
**
15524189 CATTGTTATAATATTTAATTTCAC
1 CATTGTTATAATAACTAATTTCAC
*
15524213 C---GTTATAATAACTAATTTTAC
1 CATTGTTATAATAACTAATTTCAC
15524234 CATTGTTAT
1 CATTGTTAT
15524243 TATTTTTGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 6
0.73 0.09 0.18
Matches are distributed among these distances:
21 18 0.75
24 6 0.25
ACGTcount: A:0.33, C:0.13, G:0.06, T:0.48
Consensus pattern (24 bp):
CATTGTTATAATAACTAATTTCAC
Found at i:15524504 original size:23 final size:23
Alignment explanation
Indices: 15524469--15524522 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 23
15524459 TATATAATAA
* *
15524469 ATATATATTTTTTATTTTTAATT
1 ATATATATATTTTAATTTTAATT
*
15524492 ATATTTATATTTTAATTTTAATT
1 ATATATATATTTTAATTTTAATT
*
15524515 TTA-ATATA
1 ATATATATA
15524523 ATCAATTTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 4 0.15
23 22 0.85
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (23 bp):
ATATATATATTTTAATTTTAATT
Found at i:15524583 original size:40 final size:40
Alignment explanation
Indices: 15524539--15524616 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
15524529 TTTTATTATT
15524539 TATTTTCAATTTGTGTATTGTTTTAAGAATTGTTTTAATA
1 TATTTTCAATTTGTGTATTGTTTTAAGAATTGTTTTAATA
** * * * *
15524579 TATTTTTTATTTGTTTCTTGTTTTAATATTTGTTTTAA
1 TATTTTCAATTTGTGTATTGTTTTAAGAATTGTTTTAA
15524617 ATGTATTTGA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.23, C:0.03, G:0.10, T:0.64
Consensus pattern (40 bp):
TATTTTCAATTTGTGTATTGTTTTAAGAATTGTTTTAATA
Found at i:15527593 original size:131 final size:131
Alignment explanation
Indices: 15527298--15527660 Score: 340
Period size: 131 Copynumber: 2.8 Consensus size: 131
15527288 TTGCCTCACC
* * * * * *
15527298 TTAGAAAATACGAGTGAAATTCCGAAGGGATCTTCGATTGTTTTGAGCAAAAGAGAAAGCGCAAC
1 TTAGAAAATACGAGTAAAATTCTGAAGGGATATTCGATTGTTTTGAGCAAACGAGAAATCACAAC
* * * ** * *
15527363 CCAGCACGATAGGGC-TCGATTCTCAAATCGCCAAACATCGAATATCGCCTCCGTTTTGCAAGGT
66 CCAGCACGATAGGGCAT-GATCCCCGAATTACCAAACACCGAATATCGCCTCCGTTTTGAAAGGT
15527427 TT
130 TT
* * * * * * *
15527429 TTA-ATAAACATGAATGAAAA-CCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCACA
1 TTAGA-AAATACGAGT-AAAATTCTGAAGGGATATTCGATTGTTTTGAGCAAACGAGAAATCACA
* * * *
15527492 ACCCAGCACGATAGGGCATGATCCCCGAATTATCAAACACCGAGTATTGCCTTCGTTTT-AAAGG
64 ACCCAGCACGATAGGGCATGATCCCCGAATTACCAAACACCGAATATCGCCTCCGTTTTGAAAGG
15527556 ATTT
129 -TTT
* * * *
15527560 TTAGAAGATACGAGTAAAATTTTGAAGGGATATTCGATTATTTTGAGCAAAC-ACGAAATTACAA
1 TTAGAAAATACGAGTAAAATTCTGAAGGGATATTCGATTGTTTTGAGCAAACGA-GAAATCACAA
* * * * *
15527624 CCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAA
65 CCCAGCACGATAGGGCATGA-TCCCCGAATTACCAAA
15527661 TATCAAATCT
Statistics
Matches: 183, Mismatches: 41, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
130 10 0.05
131 155 0.85
132 18 0.10
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.25
Consensus pattern (131 bp):
TTAGAAAATACGAGTAAAATTCTGAAGGGATATTCGATTGTTTTGAGCAAACGAGAAATCACAAC
CCAGCACGATAGGGCATGATCCCCGAATTACCAAACACCGAATATCGCCTCCGTTTTGAAAGGTT
T
Found at i:15530336 original size:15 final size:15
Alignment explanation
Indices: 15530296--15530337 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
15530286 TTTATTGGAC
*
15530296 TGTTAATGTATTTTT
1 TGTTTATGTATTTTT
15530311 TGTTTAT-TATTTTT
1 TGTTTATGTATTTTT
15530325 TAGTTT-TGTATTT
1 T-GTTTATGTATTT
15530338 ATACGGGCCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
14 9 0.38
15 15 0.62
ACGTcount: A:0.17, C:0.00, G:0.12, T:0.71
Consensus pattern (15 bp):
TGTTTATGTATTTTT
Found at i:15530692 original size:44 final size:44
Alignment explanation
Indices: 15530607--15531079 Score: 576
Period size: 44 Copynumber: 11.0 Consensus size: 44
15530597 AAGGTTCGTC
* * *
15530607 ATCTTCGATTTGCTCTCTGTCAATCACAGAGACGCCAAATCTG-T
1 ATCTTTGATCTGCTCTCTGCCAAT-ACAGAGACGCCAAATCTGCT
15530651 CATCTTTGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCT
1 -ATCTTTGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCT
* *
15530696 ATCTTTGATCTGCTCTCCGCCAATACAGAGATGCCAAATCTGCT
1 ATCTTTGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCT
15530740 ATCTTTGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCT
1 ATCTTTGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCT
* *
15530784 ATCTTTGATCTGCTCTCTGCCAATACAGAGACGCCAGATTTGCT
1 ATCTTTGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCT
*
15530828 ATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCT
1 ATCTTTGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCT
*
15530872 ATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAA--T-CT
1 ATCTTTGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCT
* *
15530913 A-C--T-A--TGC-CTCTGCCAATATAGAGATGCCAAATCTGCT
1 ATCTTTGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCT
* * * * * * *
15530950 ATCTTCGATCTG-TACCCCGCTAATACAAAGATGTCAAATCTGCT
1 ATCTTTGATCTGCT-CTCTGCCAATACAGAGACGCCAAATCTGCT
* * * *
15530994 ATCTTCGATCTGCCCTCTGCCAGTACAGAGATGCCCAAATCTGCT
1 ATCTTTGATCTGCTCTCTGCCAATACAGAGACG-CCAAATCTGCT
* * * * *
15531039 ATC-TTCATCTACTCTCCGCTAATACAGAGATGCCAAATCTG
1 ATCTTTGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTG
15531080 TAGGATTTGC
Statistics
Matches: 378, Mismatches: 36, Indels: 30
0.85 0.08 0.07
Matches are distributed among these distances:
34 22 0.06
35 3 0.01
36 1 0.00
37 4 0.01
38 1 0.00
40 1 0.00
41 4 0.01
42 1 0.00
43 11 0.03
44 295 0.78
45 35 0.09
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.29
Consensus pattern (44 bp):
ATCTTTGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCT
Found at i:15530929 original size:34 final size:34
Alignment explanation
Indices: 15530886--15530951 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
15530876 TCGATCTGCT
15530886 CTCTGCCAATACAGAGACGCCAAATCTACTATGC
1 CTCTGCCAATACAGAGACGCCAAATCTACTATGC
* * *
15530920 CTCTGCCAATATAGAGATGCCAAATCTGCTAT
1 CTCTGCCAATACAGAGACGCCAAATCTACTAT
15530952 CTTCGATCTG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.24
Consensus pattern (34 bp):
CTCTGCCAATACAGAGACGCCAAATCTACTATGC
Found at i:15531065 original size:166 final size:166
Alignment explanation
Indices: 15530754--15531078 Score: 456
Period size: 166 Copynumber: 2.0 Consensus size: 166
15530744 TTGATCTGCT
* * * *
15530754 CTCTGCCAATACAGAGACGCCAAATCTGCTATCTTTGATCTGCTCTCTGCCAATACAGAGACGCC
1 CTCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCCCCGCCAATACAAAGACGCC
* * * *
15530819 AGATTTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTG
66 AAATCTGCTATCTTCGATCTGCCCTCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTA
*
15530884 CTCTCTGCCAATACAGAGACGCCAAATCTACTATGC
131 CTCTCCGCCAATACAGAGACGCCAAATCTACTATGC
* * * * *
15530920 CTCTGCCAATATAGAGATGCCAAATCTGCTATCTTCGATCTG-TACCCCGCTAATACAAAGATGT
1 CTCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCT-CCCCGCCAATACAAAGACGC
* *
15530984 CAAATCTGCTATCTTCGATCTGCCCTCTGCCAGTACAGAGATGCCCAAATCTGCTATCTTC-ATC
65 CAAATCTGCTATCTTCGATCTGCCCTCTGCCAATACAGAGACG-CCAAATCTGCTATCTTCGATC
* *
15531048 TACTCTCCGCTAATACAGAGATGCCAAATCT
129 TACTCTCCGCCAATACAGAGACGCCAAATCT
15531079 GTAGGATTTG
Statistics
Matches: 139, Mismatches: 18, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
165 1 0.01
166 121 0.87
167 17 0.12
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (166 bp):
CTCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCCCCGCCAATACAAAGACGCC
AAATCTGCTATCTTCGATCTGCCCTCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTA
CTCTCCGCCAATACAGAGACGCCAAATCTACTATGC
Found at i:15533632 original size:29 final size:29
Alignment explanation
Indices: 15533590--15533647 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
15533580 TTTACTAGTG
15533590 AATGGATAATGATCTTCGTTTGGGGATAC
1 AATGGATAATGATCTTCGTTTGGGGATAC
15533619 AATGGATAATGATCTTCGTTTGGGGATAC
1 AATGGATAATGATCTTCGTTTGGGGATAC
15533648 TAAGACGGCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.10, G:0.28, T:0.34
Consensus pattern (29 bp):
AATGGATAATGATCTTCGTTTGGGGATAC
Found at i:15537804 original size:26 final size:26
Alignment explanation
Indices: 15537768--15537819 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15537758 GTGACTCCTG
15537768 CACATTGGGCGTATGTGTCATACCAT
1 CACATTGGGCGTATGTGTCATACCAT
*
15537794 CACATTGGGCGTTTGTGTCATACCAT
1 CACATTGGGCGTATGTGTCATACCAT
15537820 TTGGGATACG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.33
Consensus pattern (26 bp):
CACATTGGGCGTATGTGTCATACCAT
Found at i:15545200 original size:11 final size:12
Alignment explanation
Indices: 15545184--15545225 Score: 50
Period size: 13 Copynumber: 3.4 Consensus size: 12
15545174 CCTTCTTTGC
15545184 TTTGTA-TTGTT
1 TTTGTATTTGTT
*
15545195 TTTGTATTCTCTT
1 TTTGTATT-TGTT
15545208 TTTCGTATTTGTT
1 TTT-GTATTTGTT
15545221 TTTGT
1 TTTGT
15545226 TGCCTTTGTC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
11 6 0.23
12 3 0.12
13 12 0.46
14 5 0.19
ACGTcount: A:0.07, C:0.07, G:0.14, T:0.71
Consensus pattern (12 bp):
TTTGTATTTGTT
Found at i:15545624 original size:15 final size:15
Alignment explanation
Indices: 15545604--15545637 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
15545594 ACTGTTAATA
15545604 TATTTTTT-GTTTAT
1 TATTTTTTGGTTTAT
*
15545618 TATTTTTTGGTTTTT
1 TATTTTTTGGTTTAT
15545633 TATTT
1 TATTT
15545638 ATATAGGCCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.12, C:0.00, G:0.09, T:0.79
Consensus pattern (15 bp):
TATTTTTTGGTTTAT
Found at i:15545817 original size:29 final size:30
Alignment explanation
Indices: 15545776--15545837 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 30
15545766 GTATTTATAG
*
15545776 TATTTTCTCATATTATA-ATCATGTTTAAAA
1 TATTTTATCATATTATATAT-ATGTTTAAAA
* *
15545806 TATTTTAT-ATATTTTATATTTGTTTAAAA
1 TATTTTATCATATTATATATATGTTTAAAA
15545835 TAT
1 TAT
15545838 ATTTGTATCA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 19 0.68
30 9 0.32
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.56
Consensus pattern (30 bp):
TATTTTATCATATTATATATATGTTTAAAA
Found at i:15547032 original size:13 final size:12
Alignment explanation
Indices: 15547009--15547049 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
15546999 TCTAGTAGGA
15547009 TTTTAGTTAATT
1 TTTTAGTTAATT
15547021 TTTTAGGTTAA-T
1 TTTTA-GTTAATT
15547033 TTTTAG-TATATT
1 TTTTAGTTA-ATT
15547045 TTTTA
1 TTTTA
15547050 AGAATTTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 2 0.08
11 2 0.08
12 17 0.65
13 5 0.19
ACGTcount: A:0.24, C:0.00, G:0.10, T:0.66
Consensus pattern (12 bp):
TTTTAGTTAATT
Found at i:15552717 original size:19 final size:19
Alignment explanation
Indices: 15552693--15552733 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
15552683 TGGTGTGCAG
15552693 GTACGGGCGCTGTGCTGAC
1 GTACGGGCGCTGTGCTGAC
* *
15552712 GTACGGGGGCTGTGCTGGC
1 GTACGGGCGCTGTGCTGAC
15552731 GTA
1 GTA
15552734 GGCGTGGCTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.10, C:0.22, G:0.46, T:0.22
Consensus pattern (19 bp):
GTACGGGCGCTGTGCTGAC
Found at i:15554566 original size:17 final size:17
Alignment explanation
Indices: 15554544--15554576 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
15554534 GATATGATAC
15554544 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
15554561 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
15554577 AATTCGAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:15554577 original size:18 final size:17
Alignment explanation
Indices: 15554544--15554577 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
15554534 GATATGATAC
*
15554544 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
15554561 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
15554578 ATTCGAGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:15554900 original size:19 final size:19
Alignment explanation
Indices: 15554870--15554960 Score: 125
Period size: 19 Copynumber: 4.9 Consensus size: 19
15554860 AATCATATCT
* *
15554870 TCTAATATTGCATATTATA
1 TCTAAGATTGCATATCATA
*
15554889 TCTAAGACTGCA-ATCATA
1 TCTAAGATTGCATATCATA
15554907 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
15554924 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
15554943 TCTAATATTGCATATCAT
1 TCTAAGATTGCATATCAT
15554961 TGAAGATTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
17 16 0.25
18 14 0.22
19 34 0.53
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:15554939 original size:14 final size:15
Alignment explanation
Indices: 15554902--15554939 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
15554892 AAGACTGCAA
15554902 TCATATCTAAGATTG
1 TCATATCTAAGATTG
15554917 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
15554934 -CATATC
1 TCATATC
15554940 ATATCTAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.29
17 15 0.71
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:15555426 original size:44 final size:45
Alignment explanation
Indices: 15555335--15555492 Score: 228
Period size: 45 Copynumber: 3.5 Consensus size: 45
15555325 TCTGCTTCAG
* * *
15555335 GTCTAATACAGAGACGCCAAATTTGTTATCTTCTATCTACTCCCC
1 GTCTAATACAGAGACGCCAAATCTGTTATCTTCAATCTGCTCCCC
*
15555380 GTCTAATACAGAGACGCCAAATCTGCT-TCTTCAATCTGCTCCCC
1 GTCTAATACAGAGACGCCAAATCTGTTATCTTCAATCTGCTCCCC
* * * *
15555424 GTCTAATACAGAGATGCCAAATCTGTTATCTCCGATTTGCTCCCC
1 GTCTAATACAGAGACGCCAAATCTGTTATCTTCAATCTGCTCCCC
*
15555469 GTCTAATACAGAGATGCCAAATCT
1 GTCTAATACAGAGACGCCAAATCT
15555493 ATCATCTTGG
Statistics
Matches: 103, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
44 40 0.39
45 63 0.61
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (45 bp):
GTCTAATACAGAGACGCCAAATCTGTTATCTTCAATCTGCTCCCC
Found at i:15555652 original size:78 final size:78
Alignment explanation
Indices: 15555523--15555739 Score: 364
Period size: 78 Copynumber: 2.8 Consensus size: 78
15555513 ATGTAAACAC
*
15555523 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCTCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
15555588 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* *
15555601 ATGAAGGTCAGATCTGATGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
15555666 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* **
15555679 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGT-TGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCT-AATACAGAGATGCCAAATC
15555740 TATTTCTTCG
Statistics
Matches: 130, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
77 1 0.01
78 129 0.99
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:15556037 original size:77 final size:78
Alignment explanation
Indices: 15555818--15556103 Score: 439
Period size: 78 Copynumber: 3.7 Consensus size: 78
15555808 ACGTGAAAGC
*
15555818 CAAATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTG
1 CAAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTG
15555883 CTTCAATGAAGGT
66 CTTCAATGAAGGT
* * *
15555896 CCAATCTGTTATGTCTTCGATCTTCTCCCCGTCTAATACAGAGATGCCAAATTATCTTGGATCTG
1 CAAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTG
15555961 CTTCAATGAAGGT
66 CTTCAATGAAGGT
* * *
15555974 CAAATCTGTTGTATCTTC-ATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATCTTGGATCTG
1 CAAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTG
15556038 CTTCAATGAAGGT
66 CTTCAATGAAGGT
* * * * * **
15556051 CAGATCTGCTATGTCTTCGATCTGCTCTCCATCAAATATGGAGATGCCAAATC
1 CAAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
15556104 TGTTTCTTTG
Statistics
Matches: 187, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
77 70 0.37
78 117 0.63
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (78 bp):
CAAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTG
CTTCAATGAAGGT
Found at i:15556196 original size:364 final size:363
Alignment explanation
Indices: 15555523--15556253 Score: 1207
Period size: 364 Copynumber: 2.0 Consensus size: 363
15555513 ATGTAAACAC
*
15555523 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCTCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
* * *
15555588 TGGATCTGCTTCAATGAAGGTCAGATCTGATGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGA
66 TGGATCTGCTTCAATGAAGGTCAAATCTGATGTATCTTCGATCTGCTCCCCGTCTAATACAAAGA
*
15555653 TGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCG
131 TGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCA
** * *
15555718 TTGAATATGGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGATAGTACAGAGATACCAAATC
196 TCAAATATGGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAGTACAAAGATACCAAATC
15555783 ATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCCC
261 ATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCCC
*
15555848 GTCTAA-TACAGAGATGCCAAATCATCTTGGATCTGCTTCA
326 GTC-AACTA-AG-GATGCCAAATCATCTTGGATCTACTTCA
* * *
15555888 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTTCTCCCCGTCTAATACAGAGATGCCAAATTATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
15555952 TTGGATCTGCTTCAATGAAGGTCAAATCTGTTGTATCTTC-ATCTGCTCCCCGTCTAATACAAAG
65 TTGGATCTGCTTCAATGAAGGTCAAATCTGATGTATCTTCGATCTGCTCCCCGTCTAATACAAAG
15556016 ATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCC
130 ATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCC
* * * *
15556081 ATCAAATATGGAGATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACATTACAAAGATGCCAAAT
195 ATCAAATATGGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAGTACAAAGATACCAAAT
* *
15556146 CATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTTCTATGTCTTCGATCTGCTCCT
260 CATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCC
*
15556211 TGTCAACGTAAGGATGCCAAATCATCTTGGATCTACTTCA
325 CGTCAAC-TAAGGATGCCAAATCATCTTGGATCTACTTCA
15556251 ATG
1 ATG
15556254 TGAAAACATC
Statistics
Matches: 342, Mismatches: 21, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
363 32 0.09
364 212 0.62
365 96 0.28
366 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.33
Consensus pattern (363 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCAATGAAGGTCAAATCTGATGTATCTTCGATCTGCTCCCCGTCTAATACAAAGA
TGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCA
TCAAATATGGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAGTACAAAGATACCAAATC
ATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCCC
GTCAACTAAGGATGCCAAATCATCTTGGATCTACTTCA
Found at i:15562838 original size:41 final size:41
Alignment explanation
Indices: 15562766--15562847 Score: 110
Period size: 41 Copynumber: 2.0 Consensus size: 41
15562756 TAACATAAGC
* **
15562766 CTTGTGACCCTGAATCCTCAAGCAATGCAGTAAAGTCGTAT
1 CTTGTAACCCTGAATCCTCAAGCAACACAGTAAAGTCGTAT
** *
15562807 CTTGTAACCCTGAATCCTCGGGCAACACAGTAAATTCGTAT
1 CTTGTAACCCTGAATCCTCAAGCAACACAGTAAAGTCGTAT
15562848 ACTCCTCTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (41 bp):
CTTGTAACCCTGAATCCTCAAGCAACACAGTAAAGTCGTAT
Found at i:15564447 original size:17 final size:17
Alignment explanation
Indices: 15564425--15564457 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
15564415 GATATGATAC
15564425 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
15564442 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
15564458 AATTCGGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:15564458 original size:18 final size:17
Alignment explanation
Indices: 15564425--15564458 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
15564415 GATATGATAC
*
15564425 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
15564442 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
15564459 ATTCGGGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:15564829 original size:17 final size:19
Alignment explanation
Indices: 15564751--15564822 Score: 114
Period size: 17 Copynumber: 3.9 Consensus size: 19
15564741 AATCATATCT
*
15564751 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
15564770 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
15564788 TCTAAGATTGC--ATCATA
1 TCTAAGATTGCATATCATA
15564805 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
15564823 TGAAGATAAT
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
17 17 0.34
18 17 0.34
19 16 0.32
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:15565617 original size:19 final size:19
Alignment explanation
Indices: 15565572--15565610 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
15565562 AATAATTTAC
15565572 AAGAAATTTTTTAAATTTT
1 AAGAAATTTTTTAAATTTT
15565591 AAGAAATTTTTTAAATTTT
1 AAGAAATTTTTTAAATTTT
15565610 A
1 A
15565611 CGCAATTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (19 bp):
AAGAAATTTTTTAAATTTT
Found at i:15565696 original size:19 final size:19
Alignment explanation
Indices: 15565674--15565710 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
15565664 AGGAATGATA
*
15565674 TATATAGTAAAATATATAC
1 TATATAATAAAATATATAC
*
15565693 TATATAATAAAATTTATA
1 TATATAATAAAATATATA
15565711 AATAAAATGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (19 bp):
TATATAATAAAATATATAC
Found at i:15565731 original size:21 final size:20
Alignment explanation
Indices: 15565707--15565761 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 20
15565697 TAATAAAATT
*
15565707 TATAAATAAAATGTATAATAA
1 TATAAATAAAATGAATAAT-A
15565728 TATAAATAATATAATGAATAATA
1 TATAAAT-A-A-AATGAATAATA
15565751 TATAAATAAAA
1 TATAAATAAAA
15565762 ATAATATATA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
20 2 0.07
21 8 0.27
22 2 0.07
23 9 0.30
24 9 0.30
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.33
Consensus pattern (20 bp):
TATAAATAAAATGAATAATA
Found at i:15565765 original size:24 final size:25
Alignment explanation
Indices: 15565708--15565766 Score: 70
Period size: 24 Copynumber: 2.4 Consensus size: 25
15565698 AATAAAATTT
*
15565708 ATAAATAA-AATGTATAATAATATAA
1 ATAAA-AATAATGAATAATAATATAA
*
15565733 AT-AATATAATGAATAAT-ATATAA
1 ATAAAAATAATGAATAATAATATAA
15565756 ATAAAAATAAT
1 ATAAAAATAAT
15565767 ATATACACTA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
23 9 0.31
24 18 0.62
25 2 0.07
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.32
Consensus pattern (25 bp):
ATAAAAATAATGAATAATAATATAA
Found at i:15567455 original size:44 final size:44
Alignment explanation
Indices: 15567394--15567842 Score: 503
Period size: 44 Copynumber: 10.2 Consensus size: 44
15567384 CAAATGTCAG
* *
15567394 ATCTGCTATCTTCGATCTGCTCTCTGTCAATACAGAAAAGCCAA
1 ATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAAACGCCAA
* * * * *
15567438 ATCTGCTATCTTTGATCTGCTCTCTGTCAATATAGAGACGTCAA
1 ATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAAACGCCAA
*
15567482 ATCTGCTATCTTCGATCTGCTCACTGACAATACA-AAGACGCCAA
1 ATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAA-ACGCCAA
* * * * *
15567526 ATCTGTTATCTTCAATCTGCTCTCTGACAATATAGAGACACCAA
1 ATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAAACGCCAA
* * *
15567570 ATCTGTTATCTTCAATCCGCTCTCTGACAATACA-AAGACGCCAA
1 ATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAA-ACGCCAA
* *
15567614 ATCTGCTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAAACGCCAA
* * * *
15567658 ATTTGTTATCTTCGGTCTGCTCTCTGACAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAAACGCCAA
* * * * *
15567702 ATCTG-TCAT-TTTGATTTGCTCTTTGTCAATACAGAGACGCCAA
1 ATCTGCT-ATCTTCGATCTGCTCTCTGACAATACAGAAACGCCAA
* * * *
15567745 ATCTG-TCATCTTCGATCTGCTCTCTGTCAATACAGAGACACGAA
1 ATCTGCT-ATCTTCGATCTGCTCTCTGACAATACAGAAACGCCAA
* * * * *
15567789 ATCTGTTATCTTCAATCTGCTCTTTGACAATATAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAAACGCCAA
15567833 ATCTGCTATC
1 ATCTGCTATC
15567843 GGTGATCTAT
Statistics
Matches: 350, Mismatches: 48, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
43 41 0.12
44 306 0.87
45 3 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.31
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAAACGCCAA
Found at i:15567557 original size:132 final size:132
Alignment explanation
Indices: 15567394--15567842 Score: 582
Period size: 132 Copynumber: 3.4 Consensus size: 132
15567384 CAAATGTCAG
* * *
15567394 ATCTGCTATCTTCGATCTGCTCTCTGTCAATACAGAAAAGCCAAATCTGCTATCTTTGATCTGCT
1 ATCTGTTATCTTCAATCTGCTCTCTGACAATACAGAAAAGCCAAATCTGCTATCTTTGATCTGCT
* * * * *
15567459 CTCTGTCAATATAGAGACGTCAAATCTGCTATCTTCGATCTGCTCACTGACAATACAAAGACGCC
66 CTCTGTCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCC
15567524 AA
131 AA
* * * ** *
15567526 ATCTGTTATCTTCAATCTGCTCTCTGACAATATAGAGACA-CCAAATCTGTTATCTTCAATCCGC
1 ATCTGTTATCTTCAATCTGCTCTCTGACAATACAGA-AAAGCCAAATCTGCTATCTTTGATCTGC
* *
15567590 TCTCTGACAATACAAAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGTCAATACAGAGACGC
65 TCTCTGTCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGTCAATACAGAGACGC
15567655 CAA
130 CAA
* ** * * *
15567658 ATTTGTTATCTTCGGTCTGCTCTCTGACAATACAGAGACGCCAAATCTG-TCAT-TTTGATTTGC
1 ATCTGTTATCTTCAATCTGCTCTCTGACAATACAGAAAAGCCAAATCTGCT-ATCTTTGATCTGC
* *
15567721 TCTTTGTCAATACAGAGACGCCAAATCTG-TCATCTTCGATCTGCTCTCTGTCAATACAGAGACA
65 TCTCTGTCAATACAGAGACGCCAAATCTGCT-ATCTTCGATCTGCTCTCTGTCAATACAGAGACG
*
15567785 CGAA
129 CCAA
* * * *
15567789 ATCTGTTATCTTCAATCTGCTCTTTGACAATATAGAGACGCCAAATCTGCTATC
1 ATCTGTTATCTTCAATCTGCTCTCTGACAATACAGAAAAGCCAAATCTGCTATC
15567843 GGTGATCTAT
Statistics
Matches: 274, Mismatches: 37, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
130 1 0.00
131 114 0.42
132 157 0.57
133 2 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.31
Consensus pattern (132 bp):
ATCTGTTATCTTCAATCTGCTCTCTGACAATACAGAAAAGCCAAATCTGCTATCTTTGATCTGCT
CTCTGTCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCC
AA
Found at i:15567850 original size:88 final size:88
Alignment explanation
Indices: 15567394--15567842 Score: 596
Period size: 88 Copynumber: 5.1 Consensus size: 88
15567384 CAAATGTCAG
* * * * *
15567394 ATCTGCTATCTTCGATCTGCTCTCTGTCAATACAGAAAAGCCAAATCTGCTATCTTTGATCTGCT
1 ATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCT
*
15567459 CTCTGTCAATATAGAGACGTCAA
66 CTCTGTCAATATAGAGACGCCAA
* * *
15567482 ATCTGCTATCTTCGATCTGCTCACTGACAATACAAAGACGCCAAATCTGTTATCTTCAATCTGCT
1 ATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCT
* *
15567547 CTCTGACAATATAGAGACACCAA
66 CTCTGTCAATATAGAGACGCCAA
* * * * *
15567570 ATCTGTTATCTTCAATCCGCTCTCTGACAATACAAAGACGCCAAATCTGCTATCTTCGATCTGCT
1 ATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCT
*
15567635 CTCTGTCAATACAGAGACGCCAA
66 CTCTGTCAATATAGAGACGCCAA
* * * * * *
15567658 ATTTGTTATCTTCGGTCTGCTCTCTGACAATACAGAGACGCCAAATCTGTCAT-TTTGATTTGCT
1 ATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCT
* *
15567722 CTTTGTCAATACAGAGACGCCAA
66 CTCTGTCAATATAGAGACGCCAA
* * * *
15567745 ATCTG-TCATCTTCGATCTGCTCTCTGTCAATACAGAGACACGAAATCTGTTATCTTCAATCTGC
1 ATCTGCT-ATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGTTATCTTCGATCTGC
* *
15567809 TCTTTGACAATATAGAGACGCCAA
65 TCTCTGTCAATATAGAGACGCCAA
15567833 ATCTGCTATC
1 ATCTGCTATC
15567843 GGTGATCTAT
Statistics
Matches: 317, Mismatches: 41, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
86 1 0.00
87 76 0.24
88 239 0.75
89 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.31
Consensus pattern (88 bp):
ATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCT
CTCTGTCAATATAGAGACGCCAA
Found at i:15579748 original size:19 final size:19
Alignment explanation
Indices: 15579703--15579741 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
15579693 AATAATTTAC
15579703 AAGAAATTTTTTAAATTTT
1 AAGAAATTTTTTAAATTTT
15579722 AAGAAATTTTTTAAATTTT
1 AAGAAATTTTTTAAATTTT
15579741 A
1 A
15579742 CGCAATTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (19 bp):
AAGAAATTTTTTAAATTTT
Found at i:15579826 original size:19 final size:19
Alignment explanation
Indices: 15579804--15579902 Score: 62
Period size: 19 Copynumber: 5.0 Consensus size: 19
15579794 AAGGAATGAT
*
15579804 ATATATAGTAAAATATATA
1 ATATATAATAAAATATATA
*
15579823 ATATATAATAAAATTTATA
1 ATATATAATAAAATATATA
* *
15579842 A-ATAAAATGTATAATAATATAA
1 ATATATAA--TAAAAT-ATAT-A
15579864 ATAATATAATGAATAATATATA
1 AT-ATATAAT-AA-AATATATA
15579886 A-ATA-AA-AATAATATATA
1 ATATATAATAA-AATATATA
15579903 CATTATTTTT
Statistics
Matches: 65, Mismatches: 7, Indels: 18
0.72 0.08 0.20
Matches are distributed among these distances:
17 11 0.17
18 5 0.08
19 20 0.31
20 8 0.12
21 3 0.05
22 5 0.08
23 5 0.08
24 8 0.12
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (19 bp):
ATATATAATAAAATATATA
Found at i:15579862 original size:21 final size:20
Alignment explanation
Indices: 15579815--15579892 Score: 70
Period size: 19 Copynumber: 3.8 Consensus size: 20
15579805 TATATAGTAA
*
15579815 AATATATAATATATAAT-AA-
1 AATATATAA-ATAAAATGAAT
* *
15579834 AATTTATAAATAAAATGTAT
1 AATATATAAATAAAATGAAT
15579854 AATAATATAAATAATATAATGAAT
1 AAT-ATATAAAT-A-A-AATGAAT
15579878 AATATATAAATAAAA
1 AATATATAAATAAAA
15579893 ATAATATATA
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
18 6 0.12
19 9 0.19
20 5 0.10
21 8 0.17
22 2 0.04
23 9 0.19
24 9 0.19
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.35
Consensus pattern (20 bp):
AATATATAAATAAAATGAAT
Found at i:15579870 original size:51 final size:49
Alignment explanation
Indices: 15579753--15579896 Score: 125
Period size: 51 Copynumber: 2.9 Consensus size: 49
15579743 GCAATTAATG
* **
15579753 AATAATA-AAATAATATATAATTTATAATAAAATAAAAATGTAAGGAAT
1 AATAATATAAATAATATATAATATATAATAAAATAAAAATAAAAGGAAT
* * * *
15579801 GATATATATAGTAA-AATATATAATATATAATAAAATTTATAAATAAAATGTAT
1 AATA-ATATA--AATAATATATAATATATAATAAAA--TAAAAATAAAAGGAAT
15579854 AATAATATAAATAATATAATGAATA-AT-ATATAAATAAAAATAA
1 AATAATATAAATAATAT-AT-AATATATAATA-AAATAAAAATAA
15579897 TATATACATT
Statistics
Matches: 77, Mismatches: 9, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
48 3 0.04
49 3 0.04
50 11 0.14
51 28 0.36
52 14 0.18
53 18 0.23
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (49 bp):
AATAATATAAATAATATATAATATATAATAAAATAAAAATAAAAGGAAT
Found at i:15579896 original size:24 final size:25
Alignment explanation
Indices: 15579839--15579897 Score: 70
Period size: 24 Copynumber: 2.4 Consensus size: 25
15579829 AATAAAATTT
*
15579839 ATAAATAA-AATGTATAATAATATAA
1 ATAAA-AATAATGAATAATAATATAA
*
15579864 AT-AATATAATGAATAAT-ATATAA
1 ATAAAAATAATGAATAATAATATAA
15579887 ATAAAAATAAT
1 ATAAAAATAAT
15579898 ATATACATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
23 9 0.31
24 18 0.62
25 2 0.07
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.32
Consensus pattern (25 bp):
ATAAAAATAATGAATAATAATATAA
Found at i:15585765 original size:15 final size:15
Alignment explanation
Indices: 15585747--15585794 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
15585737 ACAACAACAT
15585747 AGGAAGATTTGGGTG
1 AGGAAGATTTGGGTG
* *
15585762 AGGAAGA-AT--AT-
1 AGGAAGATTTGGGTG
15585773 AGGAAGATTTGGGTG
1 AGGAAGATTTGGGTG
15585788 AGGAAGA
1 AGGAAGA
15585795 ATCAAACATA
Statistics
Matches: 25, Mismatches: 4, Indels: 8
0.68 0.11 0.22
Matches are distributed among these distances:
11 7 0.28
12 2 0.08
14 2 0.08
15 14 0.56
ACGTcount: A:0.38, C:0.00, G:0.42, T:0.21
Consensus pattern (15 bp):
AGGAAGATTTGGGTG
Found at i:15585781 original size:26 final size:26
Alignment explanation
Indices: 15585745--15585796 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
15585735 AGACAACAAC
15585745 ATAGGAAGATTTGGGTGAGGAAGAAT
1 ATAGGAAGATTTGGGTGAGGAAGAAT
15585771 ATAGGAAGATTTGGGTGAGGAAGAAT
1 ATAGGAAGATTTGGGTGAGGAAGAAT
15585797 CAAACATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.00, G:0.38, T:0.23
Consensus pattern (26 bp):
ATAGGAAGATTTGGGTGAGGAAGAAT
Found at i:15589344 original size:20 final size:20
Alignment explanation
Indices: 15589315--15589366 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
15589305 AATTAAATTC
15589315 TAAAAGATAAATACAA-ATAAA
1 TAAAA-ATAAATA-AAGATAAA
*
15589336 TAAAAATAATTAAAGATAAA
1 TAAAAATAAATAAAGATAAA
*
15589356 TGAAAATAAAT
1 TAAAAATAAAT
15589367 CCTAAAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 2 0.07
20 20 0.74
21 5 0.19
ACGTcount: A:0.69, C:0.02, G:0.06, T:0.23
Consensus pattern (20 bp):
TAAAAATAAATAAAGATAAA
Found at i:15608577 original size:3 final size:3
Alignment explanation
Indices: 15608571--15608602 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
15608561 AATGTAATTG
15608571 TAA TAA TAA TAA TAA TAA TAA TAA TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
15608603 ATAAGGTAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:15608950 original size:3 final size:3
Alignment explanation
Indices: 15608942--15608967 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
15608932 AGCAAAGATA
15608942 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
15608968 ATGTGCAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:15614765 original size:34 final size:34
Alignment explanation
Indices: 15614722--15614789 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
15614712 AACTCCATAA
15614722 GAAAATTCATTTTATAAACTCATTTTCATATTTT
1 GAAAATTCATTTTATAAACTCATTTTCATATTTT
15614756 GAAAATTCATTTTATAAACTCATTTTCATATTTT
1 GAAAATTCATTTTATAAACTCATTTTCATATTTT
15614790 CTCATAGTGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.12, G:0.03, T:0.50
Consensus pattern (34 bp):
GAAAATTCATTTTATAAACTCATTTTCATATTTT
Found at i:15617815 original size:30 final size:30
Alignment explanation
Indices: 15617781--15617841 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
15617771 AAGCACAAAT
*
15617781 ATAATAACCATATATAAATAATA-ATGTAAA
1 ATAATAACAATATA-AAATAATATATGTAAA
* *
15617811 ATAATAATAATATAAAATAATATATTTAAA
1 ATAATAACAATATAAAATAATATATGTAAA
15617841 A
1 A
15617842 CGTAAGATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 8 0.30
30 19 0.70
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (30 bp):
ATAATAACAATATAAAATAATATATGTAAA
Found at i:15617818 original size:16 final size:16
Alignment explanation
Indices: 15617797--15617832 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
15617787 ACCATATATA
*
15617797 AATAATAATGTAAAAT
1 AATAATAATATAAAAT
15617813 AATAATAATATAAAAT
1 AATAATAATATAAAAT
15617829 AATA
1 AATA
15617833 TATTTAAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (16 bp):
AATAATAATATAAAAT
Found at i:15632235 original size:59 final size:59
Alignment explanation
Indices: 15632143--15632263 Score: 233
Period size: 59 Copynumber: 2.1 Consensus size: 59
15632133 GGTTTCTCGT
*
15632143 CATGACGTCGAGCTTTATCTCGTCGGGATGTCACTTACTGTTTTGTCTGAAATGCGAGG
1 CATGACGTCGAGCTTTATCTCATCGGGATGTCACTTACTGTTTTGTCTGAAATGCGAGG
15632202 CATGACGTCGAGCTTTATCTCATCGGGATGTCACTTACTGTTTTGTCTGAAATGCGAGG
1 CATGACGTCGAGCTTTATCTCATCGGGATGTCACTTACTGTTTTGTCTGAAATGCGAGG
15632261 CAT
1 CAT
15632264 ACTCCACAAA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.20, C:0.21, G:0.26, T:0.34
Consensus pattern (59 bp):
CATGACGTCGAGCTTTATCTCATCGGGATGTCACTTACTGTTTTGTCTGAAATGCGAGG
Found at i:15637013 original size:39 final size:39
Alignment explanation
Indices: 15636959--15637036 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
15636949 TTAAATGCGA
*
15636959 GACATACTTCACATGTATATAGAGAGAGAAATATCTAAC
1 GACATACTCCACATGTATATAGAGAGAGAAATATCTAAC
*
15636998 GACATACTCCACATGTATATAGAGAGATAAATATCTAAC
1 GACATACTCCACATGTATATAGAGAGAGAAATATCTAAC
15637037 TTGACTTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.44, C:0.17, G:0.14, T:0.26
Consensus pattern (39 bp):
GACATACTCCACATGTATATAGAGAGAGAAATATCTAAC
Found at i:15639367 original size:20 final size:20
Alignment explanation
Indices: 15639342--15639379 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
15639332 TTTTATTGCT
*
15639342 AAATTTTATTATTGGGTTGA
1 AAATTTTAGTATTGGGTTGA
15639362 AAATTTTAGTATTGGGTT
1 AAATTTTAGTATTGGGTT
15639380 TTATTGCTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (20 bp):
AAATTTTAGTATTGGGTTGA
Found at i:15639673 original size:20 final size:20
Alignment explanation
Indices: 15639648--15639687 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
15639638 AATCAACTTA
15639648 ATATTTTCTACATTAAGTGT
1 ATATTTTCTACATTAAGTGT
15639668 ATATTTTCTACATTAAGTGT
1 ATATTTTCTACATTAAGTGT
15639688 TTTAACACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.50
Consensus pattern (20 bp):
ATATTTTCTACATTAAGTGT
Found at i:15640656 original size:3 final size:3
Alignment explanation
Indices: 15640638--15640709 Score: 126
Period size: 3 Copynumber: 24.0 Consensus size: 3
15640628 AAGAAAGATG
* *
15640638 ATA ATA ATG ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
15640686 ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA
15640710 GGGGGCAAGC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 67 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:15642244 original size:528 final size:531
Alignment explanation
Indices: 15641198--15642258 Score: 1765
Period size: 528 Copynumber: 2.0 Consensus size: 531
15641188 AACACTGGCC
*
15641198 AAAACGGCACCGTTCAGTCCTATCTATATAAATCAATTTTTTTATTTCAAAAACTTCATTCTACT
1 AAAACGGCACCGTTCAGTCCTATCTATATAAATCAATTTTTTTATGT-AAAAACTTCATTCTACT
*
15641263 TAGGTTATTAAAAAAAACTTTAAAACCCTATATTTTTCTCTCAGCCTTTCTCTTAGTCTAGCCTT
65 TAGGTTATTAAAAAAAACTTTAAAACCCTATATTTTTCTCTCAGCCTCTCTCTTAGTCTAGCCTT
* *
15641328 TGAGCCGTCGTGGGCCACTGTGGTGGCCACCGGTCACCAGCAACGGCAGTCGCTGCCTCTGGTGG
130 TGAGCAGTCGTGGGCCACTGTGGTGGCCACCGGTCACCAGCAACGGCAGTCGCTACCTCTGGTGG
*
15641393 TCGGAATCCAAAAAATCCCTTTTTAGCCTCGTTTTAACCCTTTTTTAACTTTTTAAAACCTTTTT
195 TCGAAATCCAAAAAATCCCTTTTTAGCCTCGTTTTAACCCTTTTTTAACTTTTTAAAACCTTTTT
*
15641458 CACCCTGATTTGAAGTAAAAATGAAGAAAAATCAAAAAATGTTTAAGAAATCTTTCGGTTTCTCC
260 CACCCTGATTTGAAGTAAAAATGAAGAAAAATCAAAAAATGTTTAAGAAACCTTTCGGTTTCTCC
*
15641523 TCCTCCAAAGATACTATCTGTAATAACCCAAAATTCACGGGCATCGAAAAAGTACAATATCGGGC
325 TCCTCCAAAGATACTATCTGTAATAACCCAAAATTCACGAGCATCGAAAAAGTACAATATCGGGC
** *
15641588 CTCTGTCTTAGTAAACCGAGTTCGTAAATAATTATTAGGAATAATTGTAAGTCTAGTAGTATGTT
390 CTCCATCTTAGTAAACCAAGTTCGTAAATAATTATTAGGAATAATTGTAAGTCTAGTAGTATGTT
15641653 TAATTAGGCTTTAATTAAGTGAAATTAGCTCAATTTAGAGAAAATAGTAAAAAGGACTAAATTGA
455 TAATTAGGCTTTAATTAAGTGAAATTAGCTCAATTTAGAGAAAATAGTAAAAAGGACTAAATTGA
15641718 ATAAGGGGTAAA
520 ATAAGGGGTAAA
* * *
15641730 AAAACGGCACCGTTCAGTCTTGTCTCTATAAATCAATTTTTTT-TGT-AAAACTTCATTCTACTT
1 AAAACGGCACCGTTCAGTCCTATCTATATAAATCAATTTTTTTATGTAAAAACTTCATTCTACTT
* * *
15641793 AGGTTTTTAAAAAAAACTTTAAAACCTTATATTTTTCTCTCAGCCTCTCTCTTAGTCTGGCCTTT
66 AGGTTATTAAAAAAAACTTTAAAACCCTATATTTTTCTCTCAGCCTCTCTCTTAGTCTAGCCTTT
** * * *
15641858 GAGCAGTC-TGGGCCACTGTGGTGGCCATTGGTCACCAGCGACGGCAGTCGTTACCTCTGTTGG-
131 GAGCAGTCGTGGGCCACTGTGGTGGCCACCGGTCACCAGCAACGGCAGTCGCTACCTCTGGTGGT
15641921 CTGAAATCCAAAAAATACCCTTTTTAGCCTCGTTTTAACCCTTTTTTAACTTTTTAAAA-CTTTT
196 C-GAAATCCAAAAAAT-CCCTTTTTAGCCTCGTTTTAACCCTTTTTTAACTTTTTAAAACCTTTT
* *
15641985 TCACCCTGATTTGAAGTAAAAATGATGAAAAATCAGAAAATGTTTAAGAAACCTTTCGGTTTCTC
259 TCACCCTGATTTGAAGTAAAAATGAAGAAAAATCAAAAAATGTTTAAGAAACCTTTCGGTTTCTC
* * * *
15642050 CTCCTCCAACGATACTATCTGTAATGACCCAAAATTTACGAGTATCGAAAAAGTACAATATCGGG
324 CTCCTCCAAAGATACTATCTGTAATAACCCAAAATTCACGAGCATCGAAAAAGTACAATATCGGG
* *
15642115 CCTCCATCTTAGTAAACCAAGTTCGTAAATAATTATTAGGAATAATTGTGAGTCTAGTAGTGTGT
389 CCTCCATCTTAGTAAACCAAGTTCGTAAATAATTATTAGGAATAATTGTAAGTCTAGTAGTATGT
* *
15642180 TTAATTTA-GCTTTAATTAAGTGAAATTAGTTCAATTTAGAGAAAATAGTAAAAATGACTAAATT
454 TTAA-TTAGGCTTTAATTAAGTGAAATTAGCTCAATTTAGAGAAAATAGTAAAAAGGACTAAATT
15642244 GAATAAGGGGTAAA
518 GAATAAGGGGTAAA
15642258 A
1 A
15642259 GTTGAATTAT
Statistics
Matches: 495, Mismatches: 31, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
527 1 0.00
528 322 0.65
529 130 0.26
531 2 0.00
532 40 0.08
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (531 bp):
AAAACGGCACCGTTCAGTCCTATCTATATAAATCAATTTTTTTATGTAAAAACTTCATTCTACTT
AGGTTATTAAAAAAAACTTTAAAACCCTATATTTTTCTCTCAGCCTCTCTCTTAGTCTAGCCTTT
GAGCAGTCGTGGGCCACTGTGGTGGCCACCGGTCACCAGCAACGGCAGTCGCTACCTCTGGTGGT
CGAAATCCAAAAAATCCCTTTTTAGCCTCGTTTTAACCCTTTTTTAACTTTTTAAAACCTTTTTC
ACCCTGATTTGAAGTAAAAATGAAGAAAAATCAAAAAATGTTTAAGAAACCTTTCGGTTTCTCCT
CCTCCAAAGATACTATCTGTAATAACCCAAAATTCACGAGCATCGAAAAAGTACAATATCGGGCC
TCCATCTTAGTAAACCAAGTTCGTAAATAATTATTAGGAATAATTGTAAGTCTAGTAGTATGTTT
AATTAGGCTTTAATTAAGTGAAATTAGCTCAATTTAGAGAAAATAGTAAAAAGGACTAAATTGAA
TAAGGGGTAAA
Found at i:15642561 original size:29 final size:30
Alignment explanation
Indices: 15642527--15642585 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
15642517 ACTTATTTAC
* *
15642527 TTTTTATT-AAAGTAAATAGATATTTATTA
1 TTTTTATTAAAAGTAAAAAGATAGTTATTA
*
15642556 TTTTTATTAAAATTAAAAAGATAGTTATTA
1 TTTTTATTAAAAGTAAAAAGATAGTTATTA
15642586 ATTAAATAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 8 0.31
30 18 0.69
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (30 bp):
TTTTTATTAAAAGTAAAAAGATAGTTATTA
Found at i:15643250 original size:20 final size:20
Alignment explanation
Indices: 15643225--15643270 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
15643215 GAACAGAAAT
15643225 AAAGTATAAATTGAGTTAGA
1 AAAGTATAAATTGAGTTAGA
15643245 AAAGTATAAATTGAGTTAGA
1 AAAGTATAAATTGAGTTAGA
15643265 AAAGTA
1 AAAGTA
15643271 AATGAGTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.52, C:0.00, G:0.20, T:0.28
Consensus pattern (20 bp):
AAAGTATAAATTGAGTTAGA
Found at i:15643300 original size:17 final size:18
Alignment explanation
Indices: 15643278--15643313 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
15643268 GTAAATGAGT
15643278 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
15643295 AATTAGGGTATAAATTGG
1 AATTAGGATATAAATTGG
15643313 A
1 A
15643314 TAGAAATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:15655594 original size:44 final size:44
Alignment explanation
Indices: 15655546--15656137 Score: 189
Period size: 44 Copynumber: 12.9 Consensus size: 44
15655536 TGCAGGAACT
*
15655546 GTAGTTTCAATCTACTCCACTGGAACTTCAGGGAGATAAGATTC
1 GTAGTTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTC
* * * *
15655590 GTAGTTTCGATCTGCTCCACTGCTACTTCAGGGAGATAAGATTT
1 GTAGTTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTC
* * ** * * * *
15655634 TTAGTTGTAGCTTGAATTTGTTCCACTGCAATTTTAGGAAAATAAGACTTGC
1 GTAGTT-T--C---AATCTACTCCACTGCAACTTCAGGGAGATAAGA-TT-C
* * * *
15655686 TATGTTAGATTT-AATTCGAC-CCACTGCAACTTCAAAGG-TATAAGATTT
1 ---G-TAG-TTTCAA-TCTACTCCACTGCAACTTC-AGGGAGATAAGATTC
* * * ** *
15655734 GTCGCTTCAATCTGCTCCACTGCAACTTCAGTTAGATAAGATTT
1 GTAGTTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTC
* * * *
15655778 GTAGCTTCAATCTGCTTCA-TAGCAACTTCAGGGAGATAAGATTT
1 GTAGTTTCAATCTACTCCACT-GCAACTTCAGGGAGATAAGATTC
* * * * * * * *
15655822 GTAACTTT-AATTTGCTCCACTGTAACTTCAAGTAGGTAATATTTGTAAC
1 GT-AGTTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGA--T-T--C
* * *
15655871 TTGTAGCTTT-AATTTATTCCACTGCAACTTCAGGGAAATAAGACTTGC
1 --GTAG-TTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGA-TT-C
* * * * * *
15655919 TATGGTAGATTT-AATCCGAC-CTACTGCTACTTCAGAGG-TATAGGATTT
1 ----GTAG-TTTCAAT-CTACTCCACTGCAACTTCAG-GGAGATAAGATTC
* * * * * * *
15655967 ATTGCTTCAATCTGCTCCACTGCAGCTTCAGCGAGATAAGATTT
1 GTAGTTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTC
* * * * *
15656011 GTAGCTTT-AATCTGCTCTACTGCAACTTTAAGGAGATAAGATTT
1 GTAG-TTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTC
* * * * * *
15656055 GTAGCTTGAATCTGCTCCACTACAACTTCAAGGAGATAAGATTT
1 GTAGTTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTC
* * * *
15656099 GTAGCTTT-AATATGCTCCACTGCAACTTTAAGGAGATAA
1 GTAG-TTTCAATCTACTCCACTGCAACTTCAGGGAGATAA
15656138 AATTTGTTAT
Statistics
Matches: 413, Mismatches: 96, Indels: 78
0.70 0.16 0.13
Matches are distributed among these distances:
43 14 0.03
44 261 0.63
45 10 0.02
46 1 0.00
47 2 0.00
48 1 0.00
49 5 0.01
50 75 0.18
51 38 0.09
56 4 0.01
57 2 0.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (44 bp):
GTAGTTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTC
Found at i:15655820 original size:88 final size:89
Alignment explanation
Indices: 15655706--15656126 Score: 354
Period size: 88 Copynumber: 4.6 Consensus size: 89
15655696 TTAATTCGAC
* * * *
15655706 CCACTGCAACTTCAAAGG-TATAAGATTTGTCGCTTCAATCTGCTCCACTGCAACTTCAGTTA-G
1 CCACTGCAACTTC-AGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAG-TAGG
15655769 -ATAAGATTTGTAGCTTCAATCTGCT
64 TATAAGATTTGTAGCTTCAATCTGCT
* * * *
15655794 TCA-TAGCAACTTCAGGGAGATAAGATTTGTAACTTTAATTTGCTCCACTGTAACTTCAAGTAGG
1 CCACT-GCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCAACTTC-AGTAGG
* * * * **
15655858 TAATATTTGTAACTTGTAGCTTTAATTTATT
64 T-ATA--AG--ATTTGTAGCTTCAATCTGCT
* * * * *
15655889 CCACTGCAACTTCAGGGAAATAAGACTTGCTATGGTAGATTTAATCCGAC-CTACTGCTACTTCA
1 CCACTGCAACTTCAGGGAGATAAGA--T--T-T-GTAGCTTTAATCTG-CTCCACTGCAACTTCA
* * *
15655953 G-AGGTATAGGATTTATTGCTTCAATCTGCT
59 GTAGGTATAAGATTTGTAGCTTCAATCTGCT
* * * * *
15655983 CCACTGCAGCTTCAGCGAGATAAGATTTGTAGCTTTAATCTGCTCTACTGCAACTTTA--AGGAG
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGTAGG-T
*
15656046 ATAAGATTTGTAGCTTGAATCTGCT
65 ATAAGATTTGTAGCTTCAATCTGCT
* * *
15656071 CCACTACAACTTCAAGGAGATAAGATTTGTAGCTTTAATATGCTCCACTGCAACTT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCAACTT
15656127 TAAGGAGATA
Statistics
Matches: 264, Mismatches: 49, Indels: 40
0.75 0.14 0.11
Matches are distributed among these distances:
87 8 0.03
88 140 0.53
89 4 0.02
90 1 0.00
91 3 0.01
92 1 0.00
93 1 0.00
94 35 0.13
95 36 0.14
96 2 0.01
97 1 0.00
98 3 0.01
99 5 0.02
100 3 0.01
101 20 0.08
102 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (89 bp):
CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGTAGGTA
TAAGATTTGTAGCTTCAATCTGCT
Found at i:15655960 original size:233 final size:232
Alignment explanation
Indices: 15655545--15656101 Score: 699
Period size: 233 Copynumber: 2.4 Consensus size: 232
15655535 GTGCAGGAAC
* * * * * * *
15655545 TGTAGTTTCAATCTACTCCACTGGAACTTCAGGGAGATAAGATTCGT-AGTTTCGATCTGCTCCA
1 TGTAGCTTCAATCTGCTCTAC-GCAACTTCAGGGAGATAAGATTTGTAACTTT-AATCTGCTCCA
* * * * * *
15655609 CTGCT-ACTTCAGGGAGATAAGATTT-TTAGTTGTAGCTTGAATTTGTTCCACTGCAATTTTAGG
64 CTG-TAACTTCAAGGAGATAAGATTTGTAACTTGTAGCTTGAATTTATTCCACTGCAACTTCAGG
* * *
15655672 AAAATAAGACTTGCTATGTTAGATTTAATTCGACCCACTGCAACTTCAAAGGTATAAGATTTGTC
128 AAAATAAGACTTGCTATGGTAGATTTAATCCGACCCACTGCAACTTCAAAGGTATAAGATTTATC
**
15655737 GCTTCAATCTGCTCCACTGCAACTTCAGTTAGATAAGATT
193 GCTTCAATCTGCTCCACTGCAACTTCAGCGAGATAAGATT
*
15655777 TGTAGCTTCAATCTGCTTCATA-GCAACTTCAGGGAGATAAGATTTGTAACTTTAATTTGCTCCA
1 TGTAGCTTCAATCTGC-TC-TACGCAACTTCAGGGAGATAAGATTTGTAACTTTAATCTGCTCCA
* * * * *
15655841 CTGTAACTTCAAGTAGGTAATATTTGTAACTTGTAGCTTTAATTTATTCCACTGCAACTTCAGGG
64 CTGTAACTTCAAGGAGATAAGATTTGTAACTTGTAGCTTGAATTTATTCCACTGCAACTTCAGGA
* * * * *
15655906 AAATAAGACTTGCTATGGTAGATTTAATCCGACCTACTGCTACTTCAGAGGTATAGGATTTATTG
129 AAATAAGACTTGCTATGGTAGATTTAATCCGACCCACTGCAACTTCAAAGGTATAAGATTTATCG
*
15655971 CTTCAATCTGCTCCACTGCAGCTTCAGCGAGATAAGATT
194 CTTCAATCTGCTCCACTGCAACTTCAGCGAGATAAGATT
* * * * *
15656010 TGTAGCTTTAATCTGCTCTACTGCAACTTTAAGGAGATAAGATTTGTAGCTTGAATCTGCTCCAC
1 TGTAGCTTCAATCTGCTCTAC-GCAACTTCAGGGAGATAAGATTTGTAACTTTAATCTGCTCCAC
**
15656075 TACAACTTCAAGGAGATAAGATTTGTA
65 TGTAACTTCAAGGAGATAAGATTTGTA
15656102 GCTTTAATAT
Statistics
Matches: 277, Mismatches: 41, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
231 3 0.01
232 67 0.24
233 206 0.74
234 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (232 bp):
TGTAGCTTCAATCTGCTCTACGCAACTTCAGGGAGATAAGATTTGTAACTTTAATCTGCTCCACT
GTAACTTCAAGGAGATAAGATTTGTAACTTGTAGCTTGAATTTATTCCACTGCAACTTCAGGAAA
ATAAGACTTGCTATGGTAGATTTAATCCGACCCACTGCAACTTCAAAGGTATAAGATTTATCGCT
TCAATCTGCTCCACTGCAACTTCAGCGAGATAAGATT
Found at i:15656127 original size:88 final size:88
Alignment explanation
Indices: 15655970--15656144 Score: 280
Period size: 88 Copynumber: 2.0 Consensus size: 88
15655960 AGGATTTATT
* * * *
15655970 GCTTCAATCTGCTCCACTGCAGCTTCAGCGAGATAAGATTTGTAGCTTTAATCTGCTCTACTGCA
1 GCTTCAATCTGCTCCACTACAACTTCAGCGAGATAAGATTTGTAGCTTTAATATGCTCCACTGCA
*
15656035 ACTTTAAGGAGATAAGATTTGTA
66 ACTTTAAGGAGATAAAATTTGTA
*
15656058 GCTTGAATCTGCTCCACTACAACTTCAAG-GAGATAAGATTTGTAGCTTTAATATGCTCCACTGC
1 GCTTCAATCTGCTCCACTACAACTTC-AGCGAGATAAGATTTGTAGCTTTAATATGCTCCACTGC
15656122 AACTTTAAGGAGATAAAATTTGT
65 AACTTTAAGGAGATAAAATTTGT
15656145 TATATCAAAT
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
88 78 0.98
89 2 0.03
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (88 bp):
GCTTCAATCTGCTCCACTACAACTTCAGCGAGATAAGATTTGTAGCTTTAATATGCTCCACTGCA
ACTTTAAGGAGATAAAATTTGTA
Found at i:15656143 original size:44 final size:44
Alignment explanation
Indices: 15655970--15656144 Score: 253
Period size: 44 Copynumber: 4.0 Consensus size: 44
15655960 AGGATTTATT
* * *
15655970 GCTTCAATCTGCTCCACTGCAGC-TTCAGCGAGATAAGATTTGTA
1 GCTTTAATCTGCTCCACTGCAACTTTAAG-GAGATAAGATTTGTA
*
15656014 GCTTTAATCTGCTCTACTGCAACTTTAAGGAGATAAGATTTGTA
1 GCTTTAATCTGCTCCACTGCAACTTTAAGGAGATAAGATTTGTA
* * *
15656058 GCTTGAATCTGCTCCACTACAACTTCAAGGAGATAAGATTTGTA
1 GCTTTAATCTGCTCCACTGCAACTTTAAGGAGATAAGATTTGTA
* *
15656102 GCTTTAATATGCTCCACTGCAACTTTAAGGAGATAAAATTTGT
1 GCTTTAATCTGCTCCACTGCAACTTTAAGGAGATAAGATTTGT
15656145 TATATCAAAT
Statistics
Matches: 117, Mismatches: 13, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
44 113 0.97
45 4 0.03
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (44 bp):
GCTTTAATCTGCTCCACTGCAACTTTAAGGAGATAAGATTTGTA
Found at i:15664080 original size:55 final size:55
Alignment explanation
Indices: 15664002--15664145 Score: 182
Period size: 55 Copynumber: 2.6 Consensus size: 55
15663992 TATGAAGGGC
* *
15664002 CACGCCCGTGTTGTTTTGGCAGGTTCGCCCACGGTTTCTTGGCACGGGCATGTCG
1 CACGCCCGTGTTGTTTTGGCAGGTTCGCCCACGGTTTCTAGGCACGCGCATGTCG
* ** * * **
15664057 CACGCTCGTGTTAATTTGACAGGTTCAG-CCACGATTTCTAGGCACGCGTGTGTCG
1 CACGCCCGTGTTGTTTTGGCAGGTTC-GCCCACGGTTTCTAGGCACGCGCATGTCG
*
15664112 CACGCCCGTATTGTTTTGGCAGGTTCGCCCACGG
1 CACGCCCGTGTTGTTTTGGCAGGTTCGCCCACGG
15664146 CTATGTTGCA
Statistics
Matches: 72, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
54 1 0.01
55 70 0.97
56 1 0.01
ACGTcount: A:0.13, C:0.28, G:0.30, T:0.28
Consensus pattern (55 bp):
CACGCCCGTGTTGTTTTGGCAGGTTCGCCCACGGTTTCTAGGCACGCGCATGTCG
Found at i:15667799 original size:13 final size:13
Alignment explanation
Indices: 15667783--15667813 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
15667773 TTTAATTAAA
15667783 TTAGTTAATTAGT
1 TTAGTTAATTAGT
*
15667796 TTAGATAATTAGT
1 TTAGTTAATTAGT
15667809 TTAGT
1 TTAGT
15667814 AAACAAACCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:15668133 original size:21 final size:21
Alignment explanation
Indices: 15668082--15668133 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
15668072 TACTTTAGCC
15668082 ATTTATTTTTCTTGAAATTTTA
1 ATTTATTTTTCTT-AAATTTTA
* *
15668104 TTTTA-TTTTCTT-ATTTATTA
1 ATTTATTTTTCTTAAATT-TTA
15668124 ATTTATTTTT
1 ATTTATTTTT
15668134 TCTTTCTCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
19 3 0.12
20 7 0.28
21 11 0.44
22 4 0.16
ACGTcount: A:0.23, C:0.04, G:0.02, T:0.71
Consensus pattern (21 bp):
ATTTATTTTTCTTAAATTTTA
Found at i:15669715 original size:20 final size:20
Alignment explanation
Indices: 15669690--15669731 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
15669680 AAACAAGTAA
15669690 GTACGAATTATGAACCTCGT
1 GTACGAATTATGAACCTCGT
15669710 GTACGAATTATGAACCTCGT
1 GTACGAATTATGAACCTCGT
15669730 GT
1 GT
15669732 GCCATATCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (20 bp):
GTACGAATTATGAACCTCGT
Found at i:15673167 original size:6 final size:6
Alignment explanation
Indices: 15673156--15673246 Score: 89
Period size: 6 Copynumber: 15.3 Consensus size: 6
15673146 AATCCTCCTA
* *
15673156 TTTTAT TTTTAT TTTTA- -TTTAT TCTTAT TCTTAT TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
* * * *
15673202 TTATT-T ATTTTAT TCTTAT TTTTCT TTTGAT TTTTAT TTTCAT TT
1 TT-TTAT -TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT
15673247 CAATTTTCTT
Statistics
Matches: 71, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
4 4 0.06
6 62 0.87
7 5 0.07
ACGTcount: A:0.16, C:0.05, G:0.01, T:0.77
Consensus pattern (6 bp):
TTTTAT
Found at i:15673193 original size:28 final size:25
Alignment explanation
Indices: 15673154--15673224 Score: 106
Period size: 28 Copynumber: 2.7 Consensus size: 25
15673144 CGAATCCTCC
15673154 TATTTTATTTTTATTTTTATTTATTCT
1 TATTTTATTTTTATTTTTATTTA-T-T
15673181 TATTCTTATTTTTATTTTTATTTATT
1 TATT-TTATTTTTATTTTTATTTATT
*
15673207 TATTTTATTCTTATTTTT
1 TATTTTATTTTTATTTTT
15673225 CTTTTGATTT
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
25 13 0.31
26 5 0.12
27 5 0.12
28 19 0.45
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.77
Consensus pattern (25 bp):
TATTTTATTTTTATTTTTATTTATT
Found at i:15673235 original size:37 final size:34
Alignment explanation
Indices: 15673154--15673241 Score: 115
Period size: 37 Copynumber: 2.5 Consensus size: 34
15673144 CGAATCCTCC
15673154 TATTTTATTTTTA-TTTTTATTTATTCTTATTCT
1 TATTTTATTTTTATTTTTTATTTATTCTTATTCT
*
15673187 TATTTTTATTTTTATTTATTTATTTTATTCTTATTTT
1 TA-TTTTATTTTTATTT-TTTA-TTTATTCTTATTCT
*
15673224 TCTTTTGATTTTTATTTT
1 TATTTT-ATTTTTATTTT
15673242 CATTTCAATT
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
33 2 0.04
34 11 0.23
35 2 0.04
36 9 0.19
37 24 0.50
ACGTcount: A:0.17, C:0.05, G:0.01, T:0.77
Consensus pattern (34 bp):
TATTTTATTTTTATTTTTTATTTATTCTTATTCT
Found at i:15676156 original size:13 final size:13
Alignment explanation
Indices: 15676135--15676167 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
15676125 TTTACTTAAA
*
15676135 TTAGTTAATTAGT
1 TTAGATAATTAGT
15676148 TTAGATAATTAGT
1 TTAGATAATTAGT
15676161 TTA-ATAA
1 TTAGATAA
15676168 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:15676879 original size:12 final size:13
Alignment explanation
Indices: 15676854--15676882 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
15676844 AGGGAAAAAG
15676854 AAAAATTAGTAAT
1 AAAAATTAGTAAT
15676867 AAAAATTAG-AAT
1 AAAAATTAGTAAT
15676879 AAAA
1 AAAA
15676883 TTAACTTGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (13 bp):
AAAAATTAGTAAT
Found at i:15682239 original size:23 final size:23
Alignment explanation
Indices: 15682209--15682267 Score: 91
Period size: 23 Copynumber: 2.6 Consensus size: 23
15682199 TGTCCCGAGT
*
15682209 ACACGGGCGTGTGCCCTGCCTCC
1 ACACGGGCGTGTGCCCTACCTCC
15682232 ACACGGGCGTGTGCCCTACCTCC
1 ACACGGGCGTGTGCCCTACCTCC
* *
15682255 AAACGGGCATGTG
1 ACACGGGCGTGTG
15682268 AGGCTTAAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.15, C:0.37, G:0.31, T:0.17
Consensus pattern (23 bp):
ACACGGGCGTGTGCCCTACCTCC
Found at i:15682640 original size:25 final size:25
Alignment explanation
Indices: 15682612--15682662 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
15682602 GATCATATCG
15682612 AGATTGGATCTATTCTACTTCATCT
1 AGATTGGATCTATTCTACTTCATCT
*
15682637 AGATTGGATCTATTCTGCTTCATCT
1 AGATTGGATCTATTCTACTTCATCT
15682662 A
1 A
15682663 ACTTCAACTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.20, G:0.14, T:0.43
Consensus pattern (25 bp):
AGATTGGATCTATTCTACTTCATCT
Found at i:15690094 original size:43 final size:43
Alignment explanation
Indices: 15690015--15690172 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 43
15690005 TAATGTCATA
* * * * *
15690015 TCCCAGATATGGTTTTACATGTTATCACATA-TCGATGCCACTG
1 TCCCAGACATGGTCTTACATGTAATCACA-ACACGATGCCAATG
* *
15690058 TCCCAGACAGGGTCTTATATGTAATCA-ATTA-ACGATGCCAATG
1 TCCCAGACATGGTCTTACATGTAATCACA--ACACGATGCCAATG
* ** *
15690101 TCCTAGACATGGTCTTACGCGTAATCACAACACAATGCCAATG
1 TCCCAGACATGGTCTTACATGTAATCACAACACGATGCCAATG
15690144 TCCCAGACATGGTCTTACATGTAATCACA
1 TCCCAGACATGGTCTTACATGTAATCACA
15690173 TCTCAATAAC
Statistics
Matches: 96, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
42 2 0.02
43 93 0.97
44 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.28
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGTAATCACAACACGATGCCAATG
Found at i:15690720 original size:29 final size:29
Alignment explanation
Indices: 15690656--15690721 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
15690646 TTTTCATTTA
* *
15690656 TTTCACAATTTAACCCCTCAATTTACACT
1 TTTCTCAATTTAACCCCTCAATATACACT
* * *
15690685 TTTCTCAATTTAATCCCT-AATATGCATT
1 TTTCTCAATTTAACCCCTCAATATACACT
15690713 TTTACTCAA
1 TTT-CTCAA
15690722 AATCACTTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 10 0.32
29 21 0.68
ACGTcount: A:0.30, C:0.26, G:0.02, T:0.42
Consensus pattern (29 bp):
TTTCTCAATTTAACCCCTCAATATACACT
Found at i:15712869 original size:43 final size:43
Alignment explanation
Indices: 15712821--15712990 Score: 175
Period size: 43 Copynumber: 4.0 Consensus size: 43
15712811 GTTACAGAGA
15712821 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* * *
15712864 TGTGATTACGTGTAAGACGATGTCTGGGACATTGGCATCGTTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TAT
* * * * * **
15712908 T-TGATTTCGTGTAAGACCCTGTCTAGGACAGTGGCA-TCAAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* * **
15712949 ATGTGATAACATGTAAGACCATATCTGGGTTA-TGGCATTGTA
1 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTA
15712991 CAAGCTTTAT
Statistics
Matches: 102, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
41 2 0.02
42 6 0.06
43 90 0.88
44 4 0.04
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.34
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
Found at i:15715617 original size:6 final size:6
Alignment explanation
Indices: 15715606--15715664 Score: 64
Period size: 6 Copynumber: 9.8 Consensus size: 6
15715596 AAGAAAGATA
* * * * *
15715606 AATAAC AATAAC AACAAC AACAAC AATAAC AATAAT AATAAT AATAAT
1 AATAAC AATAAC AATAAC AATAAC AATAAC AATAAC AATAAC AATAAC
*
15715654 AATAAT AATAA
1 AATAAC AATAA
15715665 TAGGGGCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 50 1.00
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.20
Consensus pattern (6 bp):
AATAAC
Found at i:15715627 original size:9 final size:9
Alignment explanation
Indices: 15715609--15715643 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
15715599 AAAGATAAAT
15715609 AACAATAAC
1 AACAATAAC
*
15715618 AACAACAAC
1 AACAATAAC
15715627 AACAATAAC
1 AACAATAAC
*
15715636 AATAATAA
1 AACAATAA
15715644 TAATAATAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.69, C:0.20, G:0.00, T:0.11
Consensus pattern (9 bp):
AACAATAAC
Found at i:15715642 original size:3 final size:3
Alignment explanation
Indices: 15715630--15715666 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
15715620 CAACAACAAC
*
15715630 AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
15715667 GGGGCAACAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:15716397 original size:21 final size:21
Alignment explanation
Indices: 15716371--15716421 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
15716361 TCCAAAAAAT
*
15716371 ACCCTTTTTAGCCTCGTTTTA
1 ACCCTTTTTAACCTCGTTTTA
**
15716392 ACCCTTTTTAACCTTTTTTTA
1 ACCCTTTTTAACCTCGTTTTA
*
15716413 AACCTTTTT
1 ACCCTTTTT
15716422 CACCCTGATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.18, C:0.25, G:0.04, T:0.53
Consensus pattern (21 bp):
ACCCTTTTTAACCTCGTTTTA
Found at i:15716402 original size:10 final size:10
Alignment explanation
Indices: 15716371--15716427 Score: 51
Period size: 10 Copynumber: 5.5 Consensus size: 10
15716361 TCCAAAAAAT
15716371 ACCCTTTTTA
1 ACCCTTTTTA
* *
15716381 GCCTCGTTTTA
1 ACC-CTTTTTA
15716392 ACCCTTTTTA
1 ACCCTTTTTA
*
15716402 ACCTTTTTTTA
1 ACC-CTTTTTA
* *
15716413 AACCTTTTTC
1 ACCCTTTTTA
15716423 ACCCT
1 ACCCT
15716428 GATTTGAAGT
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
10 20 0.56
11 16 0.44
ACGTcount: A:0.18, C:0.30, G:0.04, T:0.49
Consensus pattern (10 bp):
ACCCTTTTTA
Found at i:15716611 original size:38 final size:38
Alignment explanation
Indices: 15716560--15716636 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
15716550 CGGGGCAGGT
15716560 AAGAAGAGATTCTTTTAATTTTATTTTTGCAAAAACAA
1 AAGAAGAGATTCTTTTAATTTTATTTTTGCAAAAACAA
15716598 AAGAAGAGATTCTTTTAATTTTATTTTTGCAAAAACAA
1 AAGAAGAGATTCTTTTAATTTTATTTTTGCAAAAACAA
15716636 A
1 A
15716637 GTAGATAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.43, C:0.08, G:0.10, T:0.39
Consensus pattern (38 bp):
AAGAAGAGATTCTTTTAATTTTATTTTTGCAAAAACAA
Found at i:15717341 original size:17 final size:16
Alignment explanation
Indices: 15717303--15717332 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15717293 AAGATATTAG
15717303 AAAATA-ATTTGAAAA
1 AAAATATATTTGAAAA
15717318 AAAATATATTTGAAA
1 AAAATATATTTGAAA
15717333 TATAAATATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (16 bp):
AAAATATATTTGAAAA
Found at i:15720723 original size:46 final size:46
Alignment explanation
Indices: 15720656--15720746 Score: 182
Period size: 46 Copynumber: 2.0 Consensus size: 46
15720646 CTAGGAGTTA
15720656 CAATTTCTCTCAATTGAACAAAGAAAAAACAATTAAAATTCTATCT
1 CAATTTCTCTCAATTGAACAAAGAAAAAACAATTAAAATTCTATCT
15720702 CAATTTCTCTCAATTGAACAAAGAAAAAACAATTAAAATTCTATC
1 CAATTTCTCTCAATTGAACAAAGAAAAAACAATTAAAATTCTATC
15720747 CTAATAAAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.48, C:0.18, G:0.04, T:0.30
Consensus pattern (46 bp):
CAATTTCTCTCAATTGAACAAAGAAAAAACAATTAAAATTCTATCT
Found at i:15729411 original size:16 final size:16
Alignment explanation
Indices: 15729392--15729431 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 16
15729382 CATGATCCTA
*
15729392 TTGAAACACGAGAATT
1 TTGAAACACGAAAATT
15729408 TTGAAAACACGAAAATT
1 TTG-AAACACGAAAATT
15729425 TTGAAAC
1 TTGAAAC
15729432 TTGAAAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 7 0.32
17 15 0.68
ACGTcount: A:0.47, C:0.12, G:0.15, T:0.25
Consensus pattern (16 bp):
TTGAAACACGAAAATT
Found at i:15729437 original size:16 final size:17
Alignment explanation
Indices: 15729395--15729556 Score: 73
Period size: 18 Copynumber: 9.1 Consensus size: 17
15729385 GATCCTATTG
*
15729395 AAACACGAGAATTTTGA
1 AAACACGAAAATTTTGA
15729412 AAACACGAAAATTTTG-
1 AAACACGAAAATTTTGA
** *
15729428 AAACTTGAAAATATTTTTTTA
1 AAACACG-AAA-A--TTTTGA
* * *
15729449 AAACCCGAGAGATTGTGA
1 AAACACGA-AAATTTTGA
*
15729467 AAACACAAAAATTCTTGA
1 AAACACGAAAATT-TTGA
*
15729485 AAAC-CTGAGAATCTTTG-
1 AAACAC-GAAAAT-TTTGA
**
15729502 AAAC-CTGAGAAA-TTAAA
1 AAACAC-GA-AAATTTTGA
*
15729519 AAAAACGAAAATTTTTGA
1 AAACACGAAAA-TTTTGA
15729537 AAACACGAAAATTTTTGA
1 AAACACGAAAA-TTTTGA
15729555 AA
1 AA
15729557 CCCGAATTTT
Statistics
Matches: 109, Mismatches: 22, Indels: 27
0.69 0.14 0.17
Matches are distributed among these distances:
16 10 0.09
17 36 0.33
18 50 0.46
19 1 0.01
20 6 0.06
21 6 0.06
ACGTcount: A:0.49, C:0.12, G:0.13, T:0.27
Consensus pattern (17 bp):
AAACACGAAAATTTTGA
Found at i:15730753 original size:27 final size:28
Alignment explanation
Indices: 15730714--15730766 Score: 67
Period size: 26 Copynumber: 1.9 Consensus size: 28
15730704 CTTAGATTGC
15730714 AGAATGTTCCTTTTTTG-TTTTTTTGCTGG
1 AGAATGTTCC--TTTTGCTTTTTTTGCTGG
15730743 AGAAT-TT-CTTTTGCTTTTTTTGCT
1 AGAATGTTCCTTTTGCTTTTTTTGCT
15730767 CTTCACCGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
25 5 0.22
26 10 0.43
27 1 0.04
28 2 0.09
29 5 0.22
ACGTcount: A:0.11, C:0.11, G:0.17, T:0.60
Consensus pattern (28 bp):
AGAATGTTCCTTTTGCTTTTTTTGCTGG
Found at i:15731063 original size:29 final size:29
Alignment explanation
Indices: 15731031--15731145 Score: 115
Period size: 30 Copynumber: 3.9 Consensus size: 29
15731021 GTAATTTTTA
*
15731031 GAAAATTTAGGGTCAAAATGCAATTTAAG
1 GAAAATTTAGGGTCAAAATGAAATTTAAG
* * * *
15731060 GAAAGTTTAGGGGTCGAATTGAAATTTAAA
1 GAAAATTTA-GGGTCAAAATGAAATTTAAG
* *
15731090 GAAATTTTAGGGTTAAAATGAAATTT-AG
1 GAAAATTTAGGGTCAAAATGAAATTTAAG
* *
15731118 GAAAATTTTAAGGGTTAAAATGTAATTT
1 GAAAA-TTT-AGGGTCAAAATGAAATTT
15731146 TTTTTATTTT
Statistics
Matches: 71, Mismatches: 12, Indels: 5
0.81 0.14 0.06
Matches are distributed among these distances:
28 5 0.07
29 25 0.35
30 41 0.58
ACGTcount: A:0.43, C:0.03, G:0.22, T:0.33
Consensus pattern (29 bp):
GAAAATTTAGGGTCAAAATGAAATTTAAG
Found at i:15731145 original size:59 final size:59
Alignment explanation
Indices: 15731015--15731145 Score: 138
Period size: 59 Copynumber: 2.2 Consensus size: 59
15731005 CTTCTAGAGC
* ** * *
15731015 CAAAGTGTAATTTTTAGAAAATTTAGGGTCAAAATGCAATTTAAGGAAAGTTTAGGGGT
1 CAAAATGTAATTTAAAGAAAATTTAGGGTCAAAATGAAATTTAAGGAAAGTTTAAGGGT
* * * * * *
15731074 CGAATTGAAATTTAAAGAAATTTTAGGGTTAAAATGAAATTT-AGGAAAATTTTAAGGGT
1 CAAAATGTAATTTAAAGAAAATTTAGGGTCAAAATGAAATTTAAGG-AAAGTTTAAGGGT
*
15731133 TAAAATGTAATTT
1 CAAAATGTAATTT
15731146 TTTTTATTTT
Statistics
Matches: 57, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
58 3 0.05
59 54 0.95
ACGTcount: A:0.42, C:0.03, G:0.21, T:0.34
Consensus pattern (59 bp):
CAAAATGTAATTTAAAGAAAATTTAGGGTCAAAATGAAATTTAAGGAAAGTTTAAGGGT
Found at i:15734831 original size:79 final size:77
Alignment explanation
Indices: 15734698--15735136 Score: 546
Period size: 78 Copynumber: 5.6 Consensus size: 77
15734688 TGATATTTTT
*
15734698 ATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCT
1 ATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCT
15734761 GAGGTATTTTCA
66 GAGGTATTTTCA
* * * *
15734773 ACTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCACGGGTTACACG
1 ATTTCTGTTTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACG
*
15734838 CCGAGGTACTTTTCA
64 CTGAGGTA-TTTTCA
*
15734853 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGATG-CTCAGGTCACACGC
1 ATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA-GCCTCAGGTCACACGC
*
15734917 TGAGGTACTTTTTA
65 TGAGGTA-TTTTCA
* * * **
15734931 ATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGGCTCAATTCACACGCT
1 ATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCT
15734996 GAGGTATTTTCA
66 GAGGTATTTTCA
* * *
15735008 ATTTCCGTTTTTCAAAAAAAAAAATCAACTCATATTACGAGAGGTGAGTTAAGCCTCAGGTCACA
1 ATTTCTGTTTTTC----AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACA
* *
15735073 TGCTAAGGTATTTTCA
62 CGCTGAGGTATTTTCA
* * * *
15735089 ATTTTTTGCTTTTTC--AAAGATCAACTCATAATCCGAGAGGTGAGTTGA
1 A-TTTCTG-TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
15735137 ACTTCGGGTC
Statistics
Matches: 320, Mismatches: 31, Indels: 24
0.85 0.08 0.06
Matches are distributed among these distances:
75 12 0.04
77 45 0.14
78 124 0.39
79 54 0.17
80 17 0.05
81 58 0.18
82 4 0.01
83 6 0.02
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33
Consensus pattern (77 bp):
ATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCT
GAGGTATTTTCA
Found at i:15735171 original size:235 final size:234
Alignment explanation
Indices: 15734711--15735171 Score: 599
Period size: 235 Copynumber: 2.0 Consensus size: 234
15734701 TCTGTTTTTC
**
15734711 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTTTCAACT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACACGCTGAGGTATTTTCAACT
* * * * * *
15734776 TCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCACGGGTTACACGCCG
66 TCCGTTTTTCAAAAAAAAATCAACTCATATTACGAGAGGTGAGTTAAGCCACAGGTCACACGCCA
* * *
15734841 AGGTACTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGATGCTC
131 AGGTACTTTTCAATTTCTGTCTTTC-AAAAAATCAACTCATAATCCGAGAGGTGAGTTGATACTC
* * *
15734906 AGGTCACACGCTGAGGTACTTTTTAATTTTTGTCTTTCAA
195 AGGTCACACGCCGAGCTACTTTTCAATTTTTGTCTTTCAA
* * *
15734946 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGGCTCAATTCACACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACACGCTGAGGTATTTTCAACT
* *
15735011 TCCGTTTTTCAAAAAAAAAAATCAACTCATATTACGAGAGGTGAGTTAAGCCTCAGGTCACATGC
66 TCCGTTTTTC--AAAAAAAAATCAACTCATATTACGAGAGGTGAGTTAAGCCACAGGTCACACGC
* * * *
15735076 TAAGGTA-TTTTCAATTTTTTGCTTTTTC-AAAGATCAACTCATAATCCGAGAGGTGAGTTGA-A
129 CAAGGTACTTTTCAA-TTTCTG-TCTTTCAAAAAATCAACTCATAATCCGAGAGGTGAGTTGATA
* *
15735138 CTTCGGGTCGCATC-CCGAGCTA-TTTTCAATTTTT
192 C-TCAGGTCACA-CGCCGAGCTACTTTTCAATTTTT
15735172 TTTCAATAAA
Statistics
Matches: 195, Mismatches: 25, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
235 81 0.42
236 51 0.26
237 58 0.30
238 5 0.03
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (234 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACACGCTGAGGTATTTTCAACT
TCCGTTTTTCAAAAAAAAATCAACTCATATTACGAGAGGTGAGTTAAGCCACAGGTCACACGCCA
AGGTACTTTTCAATTTCTGTCTTTCAAAAAATCAACTCATAATCCGAGAGGTGAGTTGATACTCA
GGTCACACGCCGAGCTACTTTTCAATTTTTGTCTTTCAA
Found at i:15735406 original size:30 final size:30
Alignment explanation
Indices: 15735365--15735480 Score: 128
Period size: 30 Copynumber: 3.9 Consensus size: 30
15735355 GAAAAATAAA
*
15735365 AAATTGCATTTTGACCCCTAAACTTTTCTT
1 AAATTTCATTTTGACCCCTAAACTTTTCTT
* *
15735395 AAATTTTATTTTGACCCTTAAAC-TTTCTTT
1 AAATTTCATTTTGACCCCTAAACTTTTC-TT
* * * *
15735425 AAATTTCATTTTAACACCTAAGCTTTCCTT
1 AAATTTCATTTTGACCCCTAAACTTTTCTT
* *
15735455 AAATTACATTTTGA-CCCTAAATTTTT
1 AAATTTCATTTTGACCCCTAAACTTTT
15735481 TGAAAATTAC
Statistics
Matches: 69, Mismatches: 15, Indels: 5
0.78 0.17 0.06
Matches are distributed among these distances:
29 12 0.17
30 54 0.78
31 3 0.04
ACGTcount: A:0.29, C:0.20, G:0.04, T:0.47
Consensus pattern (30 bp):
AAATTTCATTTTGACCCCTAAACTTTTCTT
Found at i:15735510 original size:29 final size:29
Alignment explanation
Indices: 15735455--15735511 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
15735445 AGCTTTCCTT
* * **
15735455 AAATTACATTTTGACCCTAAATTTTTTGA
1 AAATTACACTTTGACCCCAAAAGTTTTGA
*
15735484 AAATTACACTTTGGCCCCAAAAGTTTTG
1 AAATTACACTTTGACCCCAAAAGTTTTG
15735512 CTGCATTTGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.39
Consensus pattern (29 bp):
AAATTACACTTTGACCCCAAAAGTTTTGA
Found at i:15744595 original size:18 final size:18
Alignment explanation
Indices: 15744512--15744607 Score: 83
Period size: 18 Copynumber: 5.4 Consensus size: 18
15744502 ACCCAAGAGA
*
15744512 TTTTGAAAACACAAAAAT
1 TTTTGAAAACACGAAAAT
* *
15744530 TCTTGAAAAC-CTGAGAAT
1 TTTTGAAAACAC-GAAAAT
*
15744548 TTTTG-AAACTCGAGAAA-
1 TTTTGAAAACACGA-AAAT
** *
15744565 -TTAAAAAAAACGAAAAT
1 TTTTGAAAACACGAAAAT
15744582 TTTTGAAAACACGAAAAT
1 TTTTGAAAACACGAAAAT
15744600 TTTTGAAA
1 TTTTGAAA
15744608 CCCGAATTTT
Statistics
Matches: 60, Mismatches: 12, Indels: 12
0.71 0.14 0.14
Matches are distributed among these distances:
16 5 0.08
17 13 0.22
18 42 0.70
ACGTcount: A:0.50, C:0.10, G:0.11, T:0.28
Consensus pattern (18 bp):
TTTTGAAAACACGAAAAT
Found at i:15746188 original size:30 final size:31
Alignment explanation
Indices: 15746087--15746203 Score: 118
Period size: 30 Copynumber: 3.9 Consensus size: 31
15746077 TGTAATTTTT
* *
15746087 AGAAAATTTA-GGGTCAAAATGCAA-TTTAA
1 AGAAAGTTTAGGGGTCAAAATGAAATTTTAA
* ** * *
15746116 AGAAAGTTAAGGGGTTGAAGTGGAA-TTTAA
1 AGAAAGTTTAGGGGTCAAAATGAAATTTTAA
*
15746146 AGAAAG-TTAGGGGTCAAAATGAAATTTTAG
1 AGAAAGTTTAGGGGTCAAAATGAAATTTTAA
*
15746176 A-AAAGTTTAGGGGTCAAAATGTAATTTT
1 AGAAAGTTTAGGGGTCAAAATGAAATTTT
15746204 TTATTTTTCA
Statistics
Matches: 72, Mismatches: 13, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
29 25 0.35
30 47 0.65
ACGTcount: A:0.43, C:0.03, G:0.25, T:0.29
Consensus pattern (31 bp):
AGAAAGTTTAGGGGTCAAAATGAAATTTTAA
Found at i:15746226 original size:6 final size:6
Alignment explanation
Indices: 15746217--15746246 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
15746207 TTTTTCAAAA
15746217 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
15746247 TTGAAATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
ATTTTT
Found at i:15752794 original size:14 final size:14
Alignment explanation
Indices: 15752771--15752804 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
15752761 TTTTGATACT
15752771 AAAT-TTAATTATA
1 AAATATTAATTATA
15752784 AAATATTAATTATA
1 AAATATTAATTATA
15752798 AAATATT
1 AAATATT
15752805 TTTAAATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
AAATATTAATTATA
Found at i:15753826 original size:18 final size:20
Alignment explanation
Indices: 15753804--15753857 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 20
15753794 ATAAAATTAT
15753804 TAAAAATTATTT-AAATCCA
1 TAAAAATTATTTAAAATCCA
*
15753823 -AAAATTTATTTAAAATCCA
1 TAAAAATTATTTAAAATCCA
*
15753842 TAAAAA-CATTTAAAAT
1 TAAAAATTATTTAAAAT
15753858 TACCAAATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 10 0.33
19 16 0.53
20 4 0.13
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (20 bp):
TAAAAATTATTTAAAATCCA
Found at i:15753887 original size:17 final size:18
Alignment explanation
Indices: 15753852--15753891 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
15753842 TAAAAACATT
*
15753852 TAAAATTACCAAATTTTA
1 TAAAATTACCAAATATTA
*
15753870 TAAAATTA-GAAATATTA
1 TAAAATTACCAAATATTA
15753887 TAAAA
1 TAAAA
15753892 ACTTACAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (18 bp):
TAAAATTACCAAATATTA
Found at i:15755411 original size:32 final size:33
Alignment explanation
Indices: 15755370--15755434 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
15755360 GTAATTCATC
15755370 GTCATTA-TTTTTAATTAAATCAGTCAAAATTA
1 GTCATTATTTTTTAATTAAATCAGTCAAAATTA
15755402 GTCATTATTTTTTAATTAAATCAGTCAAAATTA
1 GTCATTATTTTTTAATTAAATCAGTCAAAATTA
15755435 AGGTTTTTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 7 0.22
33 25 0.78
ACGTcount: A:0.40, C:0.09, G:0.06, T:0.45
Consensus pattern (33 bp):
GTCATTATTTTTTAATTAAATCAGTCAAAATTA
Found at i:15780591 original size:25 final size:25
Alignment explanation
Indices: 15780539--15780592 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
15780529 GGGATAGGAC
* * *
15780539 ATGATATGATATGTTATGATTCGTT
1 ATGATATGATAAGATATGATTCGGT
*
15780564 ATGATATGATAAGATATGATTTGGT
1 ATGATATGATAAGATATGATTCGGT
15780589 ATGA
1 ATGA
15780593 AATCTGATAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.33, C:0.02, G:0.22, T:0.43
Consensus pattern (25 bp):
ATGATATGATAAGATATGATTCGGT
Done.