Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 49 of 290
Found at i:15782771 original size:31 final size:28
Alignment explanation
Indices: 15782731--15782788 Score: 80
Period size: 31 Copynumber: 2.0 Consensus size: 28
15782721 CTGATTTTAG
15782731 AAAATCATAAAATTATAATTACAAAAAATA
1 AAAATCATAAAATTATAA-TA-AAAAAATA
*
15782761 AAAATACATAAAGTTATAATAAAAAAAT
1 AAAAT-CATAAAATTATAATAAAAAAAT
15782789 CAAGGTTTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 7 0.27
30 7 0.27
31 12 0.46
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.26
Consensus pattern (28 bp):
AAAATCATAAAATTATAATAAAAAAATA
Found at i:15787527 original size:20 final size:20
Alignment explanation
Indices: 15787485--15787529 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
15787475 TTTACAACTT
* *
15787485 TTTTATTAGTTGTTTATACA
1 TTTTATTAGTTGATCATACA
15787505 TTTTATTAGTTTGATCATA-A
1 TTTTATTAG-TTGATCATACA
15787525 TTTTA
1 TTTTA
15787530 AATTTTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.27, C:0.04, G:0.09, T:0.60
Consensus pattern (20 bp):
TTTTATTAGTTGATCATACA
Found at i:15808867 original size:21 final size:18
Alignment explanation
Indices: 15808843--15808891 Score: 57
Period size: 17 Copynumber: 2.7 Consensus size: 18
15808833 AGTATTTGTG
15808843 ATTATTTTGTTTCAATAAAT
1 ATTATTTTGTTT-AA-AAAT
15808863 AATTA-TTT-TTTAAAAAT
1 -ATTATTTTGTTTAAAAAT
15808880 ATTATTTTGTTT
1 ATTATTTTGTTT
15808892 TGATATGTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
16 4 0.15
17 7 0.27
18 5 0.19
19 3 0.12
20 3 0.12
21 4 0.15
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (18 bp):
ATTATTTTGTTTAAAAAT
Found at i:15809005 original size:36 final size:32
Alignment explanation
Indices: 15808945--15809011 Score: 80
Period size: 36 Copynumber: 2.0 Consensus size: 32
15808935 TTCATGCCCA
* *
15808945 AAAAATAATTATAAAAAATGAATATTGATATT
1 AAAAATAATTATAAAAAATCAATATGGATATT
15808977 AAAAATAAATATATAAAAAATTTCAATATGGATAT
1 AAAAAT-AAT-TATAAAAAA--TCAATATGGATAT
15809012 AGTAAATTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 6 0.21
33 3 0.10
34 9 0.31
36 11 0.38
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.33
Consensus pattern (32 bp):
AAAAATAATTATAAAAAATCAATATGGATATT
Found at i:15809444 original size:4 final size:4
Alignment explanation
Indices: 15809435--15809460 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
15809425 TAATATGTAC
15809435 AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AA
15809461 TAATAACCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:15810655 original size:24 final size:24
Alignment explanation
Indices: 15810615--15810664 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
15810605 TAATTAGGTC
15810615 TTTTTATTTTATAACTT-TATAATT
1 TTTTTATTTTATAACTTGTAT-ATT
*
15810639 TTTTTA-TTTATTTACTTGTATATT
1 TTTTTATTTTA-TAACTTGTATATT
15810663 TT
1 TT
15810665 AAGCAACTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
23 4 0.17
24 16 0.70
25 3 0.13
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.70
Consensus pattern (24 bp):
TTTTTATTTTATAACTTGTATATT
Found at i:15810979 original size:2 final size:2
Alignment explanation
Indices: 15810972--15811000 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
15810962 TACGTTTTCT
15810972 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
15811001 TTGCTTTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15811184 original size:37 final size:37
Alignment explanation
Indices: 15811134--15811208 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
15811124 CATATATTTC
15811134 CTTAAATCCATGTGTTTTAACATATATTTTTGCTATT
1 CTTAAATCCATGTGTTTTAACATATATTTTTGCTATT
15811171 CTTAAATCCATGTGTTTTAACATATATTTTTGCTATT
1 CTTAAATCCATGTGTTTTAACATATATTTTTGCTATT
15811208 C
1 C
15811209 AAATATGCTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.27, C:0.15, G:0.08, T:0.51
Consensus pattern (37 bp):
CTTAAATCCATGTGTTTTAACATATATTTTTGCTATT
Found at i:15812160 original size:131 final size:131
Alignment explanation
Indices: 15811984--15812325 Score: 386
Period size: 131 Copynumber: 2.6 Consensus size: 131
15811974 TAAAAATTCT
*
15811984 TTAAAACGAAGGCGATATTCGAT-TCATGGCAATTCGTGGAATCGTGCCCTAACGTGTTGGGTTG
1 TTAAAACGAAGGCGATATTCGATAT-TTGGCAATTCG-GGAATCGTGCCCTAACGTGTTGGGTTG
* * * * * *
15812048 CAATTTCTCGTTTGCTTAAAGTAATCGAAGGTCCCTTTAGAATTTCACCCATGTCTTTTAAA-AG
64 CAATTTCTCGTTTGCTTAAAATAATCAAAGATCCCTTCAAAATTTCACCCATGTCTTCTAAAGA-
*
15812112 TCCC
128 TCCA
* * *
15812116 TT-AAACGAAGGCGATATTTGATATTTGGCGACTCGCGGAATCGTGCCCTAACGTGTTGGGTTGC
1 TTAAAACGAAGGCGATATTCGATATTTGGCAATTCG-GGAATCGTGCCCTAACGTGTTGGGTTGC
* * * *
15812180 AATTTAGT-GTTCGCTTAAAATAATCAAATATCCCTTCAAAATTTCACTCATGTCTTCTAAAGAT
65 AATTT-CTCGTTTGCTTAAAATAATCAAAGATCCCTTCAAAATTTCACCCATGTCTTCTAAAGAT
15812244 CCA
129 CCA
** ** * * * * **
15812247 TTAAAACGAAGGTAATATTCGGCATTTGGCAATTTGGGAATCATGCCCTATCGTGCTGGGTTGTG
1 TTAAAACGAAGGCGATATTCGATATTTGGCAATTCGGGAATCGTGCCCTAACGTGTTGGGTTGCA
15812312 ATTTCTCGTTTGCT
66 ATTTCTCGTTTGCT
15812326 CAACAAAATC
Statistics
Matches: 174, Mismatches: 31, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
130 1 0.01
131 143 0.82
132 30 0.17
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (131 bp):
TTAAAACGAAGGCGATATTCGATATTTGGCAATTCGGGAATCGTGCCCTAACGTGTTGGGTTGCA
ATTTCTCGTTTGCTTAAAATAATCAAAGATCCCTTCAAAATTTCACCCATGTCTTCTAAAGATCC
A
Found at i:15816446 original size:44 final size:44
Alignment explanation
Indices: 15816383--15816492 Score: 202
Period size: 44 Copynumber: 2.5 Consensus size: 44
15816373 CTGATCACAT
15816383 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCAC
* *
15816427 TTATCACTTGTCATTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCAC
15816471 TTATCACTTGTCACTGATCAGA
1 TTATCACTTGTCACTGATCAGA
15816493 AGTACTCAAA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 63 1.00
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.32
Consensus pattern (44 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCAC
Found at i:15824143 original size:51 final size:51
Alignment explanation
Indices: 15824072--15824232 Score: 295
Period size: 51 Copynumber: 3.2 Consensus size: 51
15824062 CTGATCACAT
*
15824072 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
1 TTATCACTTGTCATTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
15824123 TTATCACTTGTCATTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
1 TTATCACTTGTCATTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
*
15824174 TTATCACTTGTCATTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCATTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
*
15824225 TTGTCACT
1 TTATCACT
15824233 GATCAAAAGT
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
51 107 1.00
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (51 bp):
TTATCACTTGTCATTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
Found at i:15827093 original size:9 final size:9
Alignment explanation
Indices: 15827059--15827096 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
15827049 CCATCCTTAT
*
15827059 AAAATATTA
1 AAAATAATA
15827068 AAAATAATTA
1 AAAATAA-TA
15827078 AAAATAATA
1 AAAATAATA
15827087 AAAATAATA
1 AAAATAATA
15827096 A
1 A
15827097 TATAAGGGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
9 18 0.67
10 9 0.33
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (9 bp):
AAAATAATA
Found at i:15827239 original size:32 final size:31
Alignment explanation
Indices: 15827197--15827262 Score: 105
Period size: 32 Copynumber: 2.1 Consensus size: 31
15827187 TTACGTACCT
15827197 GAAAAAAAAACAGAATTAAAAGCTTTGATATG
1 GAAAAAAAAACAGAATTAAAAGCTTTGAT-TG
* *
15827229 GAAAATAAAACAGAATTAAAAGGTTTGATTG
1 GAAAAAAAAACAGAATTAAAAGCTTTGATTG
15827260 GAA
1 GAA
15827263 TTTTGAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 5 0.16
32 27 0.84
ACGTcount: A:0.55, C:0.05, G:0.18, T:0.23
Consensus pattern (31 bp):
GAAAAAAAAACAGAATTAAAAGCTTTGATTG
Found at i:15828001 original size:10 final size:10
Alignment explanation
Indices: 15827982--15828031 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
15827972 TTAAATTCTA
15827982 AAAGATAAAT
1 AAAGATAAAT
15827992 ACAA-ATAAAT
1 A-AAGATAAAT
*
15828002 AAAGATAATT
1 AAAGATAAAT
15828012 AAAGATAAAT
1 AAAGATAAAT
15828022 GAAA-ATAAAT
1 -AAAGATAAAT
15828032 CCTAAAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:15828081 original size:14 final size:13
Alignment explanation
Indices: 15828045--15828082 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
15828035 AAAATTAAAT
15828045 CTAAATAATTATC
1 CTAAATAATTATC
*
15828058 CTTAATAATTATC
1 CTAAATAATTATC
15828071 CTAATATAATTA
1 CTAA-ATAATTA
15828083 AACATTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.42
Consensus pattern (13 bp):
CTAAATAATTATC
Found at i:15830995 original size:3 final size:3
Alignment explanation
Indices: 15830981--15831251 Score: 248
Period size: 3 Copynumber: 91.3 Consensus size: 3
15830971 AATTAAAAAG
* * * *
15830981 ATA ATG ATA ATA ATA ATA ATA ATA ACA ACA ACA ATA ATA ATAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA
* * * *
15831027 ATA ATA ATA GTA A-A AAA ATA ATA ATA GTA ATA ATA ATA ATG ATA ATAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A
* * * *
15831075 ATA ATA ATA GTA A-A A-A ATA ATA GTA ATA ATA ATG ATA ATA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
15831121 AAA ATA AAA ATA ATA ATA GTA ATA ATA ATA ATA GTA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
15831169 ATA CTA GTA ATA ATA ATA ATG ATA ATAA ATA GTA ATA GTA A-A A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA
* * * *
15831213 ATA ATA ATA GTA A-A AAA ATA ATA CTA GTA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
15831252 AAAAATTAAT
Statistics
Matches: 219, Mismatches: 42, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
2 12 0.05
3 198 0.90
4 9 0.04
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:15832876 original size:21 final size:21
Alignment explanation
Indices: 15832850--15832904 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
15832840 TTAGGGTCAT
15832850 AAATAATTAATTAAAGTATTA
1 AAATAATTAATTAAAGTATTA
*
15832871 AAATAATATAA-TAAGGTATTA
1 AAATAAT-TAATTAAAGTATTA
**
15832892 TTAT-ATTAATTAA
1 AAATAATTAATTAA
15832905 TCTAAATTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 3 0.10
20 5 0.17
21 18 0.62
22 3 0.10
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (21 bp):
AAATAATTAATTAAAGTATTA
Found at i:15836447 original size:25 final size:24
Alignment explanation
Indices: 15836417--15836463 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
15836407 AATCATTTTT
*
15836417 TCATTTTGGCCCTTATATTTTTAGG
1 TCATTTTGGCCCTCA-ATTTTTAGG
15836442 TCATTTTGGCCCTCAATTTTTA
1 TCATTTTGGCCCTCAATTTTTA
15836464 AAATTTACAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.17, C:0.19, G:0.13, T:0.51
Consensus pattern (24 bp):
TCATTTTGGCCCTCAATTTTTAGG
Found at i:15837355 original size:40 final size:40
Alignment explanation
Indices: 15837300--15837446 Score: 177
Period size: 40 Copynumber: 3.7 Consensus size: 40
15837290 TTTGGATAAA
*
15837300 AAAAACGCCGCTATAGATCGAGCATTAGCGGTGCTTTTTG
1 AAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
* * *
15837340 AAAAACGCCGCTATAGATTGAGCATTAGTGGCGTTTTTTG
1 AAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
*** * * * * *
15837380 AAAAATATCGGTATAAATCGAGAATTAGCAGCACTTTTTG
1 AAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
*
15837420 AAAAACGCCACTATAGATCGAGCATTA
1 AAAAACGCCGCTATAGATCGAGCATTA
15837447 AAAATTAAGC
Statistics
Matches: 85, Mismatches: 22, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
40 85 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (40 bp):
AAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
Found at i:15837651 original size:99 final size:99
Alignment explanation
Indices: 15837478--15837663 Score: 255
Period size: 99 Copynumber: 1.9 Consensus size: 99
15837468 GTTTTATGCT
*** * *
15837478 GAGCTTTAGTGGCATTAGCGGTGCTTTTTGAAAAACGCCACTATAGATCGAGTATTAGCTACACT
1 GAGCTTTAGTGGCATTAGCGACACTTTTTGAAAAACACCACTATAGATCGAGTATTAGCGACACT
* * *
15837543 TTTTGAAAAACGCTGCAAAAAATTTCAGTAAGAC
66 TTATCAAAAACGCCGCAAAAAATTTCAGTAAGAC
* * * * *
15837577 GAGCTTTTGTGGCATTAGCGACACTTTTTGAAAAACACCGCTATAGATTGAGTTTTAGCGGCACT
1 GAGCTTTAGTGGCATTAGCGACACTTTTTGAAAAACACCACTATAGATCGAGTATTAGCGACACT
15837642 TTATCAAAAACGCCGCAAAAAA
66 TTATCAAAAACGCCGCAAAAAA
15837664 CATGTTATCT
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
99 74 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (99 bp):
GAGCTTTAGTGGCATTAGCGACACTTTTTGAAAAACACCACTATAGATCGAGTATTAGCGACACT
TTATCAAAAACGCCGCAAAAAATTTCAGTAAGAC
Found at i:15837982 original size:14 final size:14
Alignment explanation
Indices: 15837960--15838146 Score: 121
Period size: 14 Copynumber: 13.2 Consensus size: 14
15837950 TTGATTATCA
*
15837960 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
15837974 TTATGGTTTAGGGT
1 TTATGGTTTAGGGT
* *
15837988 ATATAGTTTAGGGT
1 TTATGGTTTAGGGT
15838002 TTATGGTTTAGGGT
1 TTATGGTTTAGGGT
* * *
15838016 ATATAGTTTAGGAT
1 TTATGGTTTAGGGT
*
15838030 TTAAGGTTTAGGAGT
1 TTATGGTTTAGG-GT
*
15838045 TACTAT--TTTAAGGT
1 T--TATGGTTTAGGGT
* * *
15838059 TTATGGATTATGGA
1 TTATGGTTTAGGGT
*
15838073 TTATGGTTTATGGT
1 TTATGGTTTAGGGT
* *
15838087 TTA-AGTGTTGGGGT
1 TTATGGT-TTAGGGT
*
15838101 TTAAGGTTTATGGGT
1 TTATGGTTTA-GGGT
** *
15838116 TTGGGGTTAAGGG-
1 TTATGGTTTAGGGT
*
15838129 TTAGGTGTTTAGGGT
1 TTATG-GTTTAGGGT
15838144 TTA
1 TTA
15838147 AGGGTTATGC
Statistics
Matches: 134, Mismatches: 29, Indels: 19
0.74 0.16 0.10
Matches are distributed among these distances:
12 3 0.02
13 6 0.04
14 100 0.75
15 23 0.17
17 2 0.01
ACGTcount: A:0.21, C:0.01, G:0.32, T:0.46
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:15837992 original size:28 final size:28
Alignment explanation
Indices: 15837961--15838064 Score: 147
Period size: 28 Copynumber: 3.7 Consensus size: 28
15837951 TGATTATCAT
15837961 TATAGTTTAGGGTTTATGGTTTAGGGTA
1 TATAGTTTAGGGTTTATGGTTTAGGGTA
15837989 TATAGTTTAGGGTTTATGGTTTAGGGTA
1 TATAGTTTAGGGTTTATGGTTTAGGGTA
* *
15838017 TATAGTTTAGGATTTAAGGTTTAGGAGT-
1 TATAGTTTAGGGTTTATGGTTTAGG-GTA
* *
15838045 TACTATTTTAAGGTTTATGG
1 TA-TAGTTTAGGGTTTATGG
15838065 ATTATGGATT
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
28 53 0.78
29 15 0.22
ACGTcount: A:0.24, C:0.01, G:0.29, T:0.46
Consensus pattern (28 bp):
TATAGTTTAGGGTTTATGGTTTAGGGTA
Found at i:15838108 original size:7 final size:7
Alignment explanation
Indices: 15837960--15838089 Score: 77
Period size: 7 Copynumber: 18.4 Consensus size: 7
15837950 TTGATTATCA
*
15837960 TTATAGT
1 TTATGGT
*
15837967 TTAGGGT
1 TTATGGT
15837974 TTATGGT
1 TTATGGT
*
15837981 TTAGGGT
1 TTATGGT
* *
15837988 ATATAGT
1 TTATGGT
*
15837995 TTAGGGT
1 TTATGGT
15838002 TTATGGT
1 TTATGGT
*
15838009 TTAGGGT
1 TTATGGT
* *
15838016 ATATAGT
1 TTATGGT
15838023 TTA-GGAT
1 TTATGG-T
*
15838030 TTAAGGT
1 TTATGGT
*
15838037 TTAGGAGT
1 TTATG-GT
15838045 TACTAT--T
1 T--TATGGT
*
15838052 TTAAGGT
1 TTATGGT
*
15838059 TTATGGA
1 TTATGGT
*
15838066 TTATGGA
1 TTATGGT
15838073 TTATGGT
1 TTATGGT
15838080 TTATGGT
1 TTATGGT
15838087 TTA
1 TTA
15838090 AGTGTTGGGG
Statistics
Matches: 93, Mismatches: 23, Indels: 14
0.72 0.18 0.11
Matches are distributed among these distances:
5 2 0.02
6 1 0.01
7 83 0.89
8 5 0.05
10 2 0.02
ACGTcount: A:0.24, C:0.01, G:0.28, T:0.48
Consensus pattern (7 bp):
TTATGGT
Found at i:15838145 original size:57 final size:57
Alignment explanation
Indices: 15838078--15838203 Score: 144
Period size: 57 Copynumber: 2.2 Consensus size: 57
15838068 ATGGATTATG
* * * * * ** * * *
15838078 GTTTATGGTTTAAGTGTTGGGGTTTAAGGTTTATGGGTTTGGGGTTAAGGGTTAGGT
1 GTTTAGGGTTTAAGGGTTAGGCTTTAAGATTTACAGGTTAGGGGATAAGGGTTAGGA
* *
15838135 GTTTAGGGTTTAAGGGTTATGCTTTATGATTTACAGGTTAGGGGATAAGGGTTAGGA
1 GTTTAGGGTTTAAGGGTTAGGCTTTAAGATTTACAGGTTAGGGGATAAGGGTTAGGA
15838192 GTTTAGGGTTTA
1 GTTTAGGGTTTA
15838204 GATTAATTAG
Statistics
Matches: 57, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.20, C:0.02, G:0.37, T:0.41
Consensus pattern (57 bp):
GTTTAGGGTTTAAGGGTTAGGCTTTAAGATTTACAGGTTAGGGGATAAGGGTTAGGA
Found at i:15839226 original size:113 final size:110
Alignment explanation
Indices: 15838951--15839237 Score: 308
Period size: 112 Copynumber: 2.5 Consensus size: 110
15838941 TAAATATTTA
* * * * *
15838951 GCAAAAA-TCATTTTGTTTTAATAAAAACGGCGCCATTCTATTGGATTTCTTAGTGACGTTTTTG
1 GCAAAAAGTTATTTTGTTTTAATCAAAACGGCGCC-TTTTTTTGGATTT-TTAGTGGCGTTTTTG
* *
15839015 GTGAAACACCGCAATATGTGGGCTTTAGCGGTGCTAGTGAAAAACAC
64 GTAAAACACCGCAATAGGTGGGCTTTAGCGGTGCTAGTGAAAAACAC
* * * * *
15839062 GTAAAAAGTTATTCTGTTTTAATCAAAATGACGCCGTTTTATTT-GATTTTTTAGTGGCTTTTTT
1 GCAAAAAGTTATTTTGTTTTAATCAAAACGGCGCC-TTTT-TTTGGA-TTTTTAGTGGCGTTTTT
* * * *
15839126 GTTAAAACGCCGTAATAGGTCGGGCTTTAGCGGTGCTAGGTGAAAAACGCC
63 GGTAAAACACCGCAATAGGT-GGGCTTTAGCGGTGCTA-GTGAAAAAC-AC
* * *
15839177 GCAAAATGTTATTTTGTTTTAATCAAAACGGCGCCTTTTTGTAGGTTTTTTAGTGGCGTTT
1 GCAAAAAGTTATTTTGTTTTAATCAAAACGGCGCCTTTTT-TTGGATTTTTAGTGGCGTTT
15839238 ATCCAATAAA
Statistics
Matches: 143, Mismatches: 25, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
111 6 0.04
112 54 0.38
113 23 0.16
114 28 0.20
115 32 0.22
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.37
Consensus pattern (110 bp):
GCAAAAAGTTATTTTGTTTTAATCAAAACGGCGCCTTTTTTTGGATTTTTAGTGGCGTTTTTGGT
AAAACACCGCAATAGGTGGGCTTTAGCGGTGCTAGTGAAAAACAC
Found at i:15839270 original size:115 final size:113
Alignment explanation
Indices: 15839026--15839296 Score: 280
Period size: 115 Copynumber: 2.4 Consensus size: 113
15839016 TGAAACACCG
* *
15839026 CAATATGTGGGCTTTAGCGGTGCTAGTGAAAAAC-ACGTAAAAAGTTATTCTGTTTTAATCAAAA
1 CAATATGTGGGCTTTAGCGGTGCTAGTGAAAAACGCCGCAAAAAGTTATTCTGTTTTAATCAAAA
* * * * *** *
15839090 TGACGCCGTTTTATTTGATTTTTTAGTGGCTTTTTTGTTAAAACGCCG
66 CGACGCCGTTTTATTAGATTTTTTAGTGGCGTTTATCCAAAAACGCCA
* * * *
15839138 TAATAGGTCGGGCTTTAGCGGTGCTAGGTGAAAAACGCCGCAAAATGTTATTTTGTTTTAATCAA
1 CAATATGT-GGGCTTTAGCGGTGCTA-GTGAAAAACGCCGCAAAAAGTTATTCTGTTTTAATCAA
* *
15839203 AACGGCGCC-TTTT-TGTAGGTTTTTTAGTGGCGTTTATCCAATAAACGCCA
64 AACGACGCCGTTTTAT-TAGATTTTTTAGTGGCGTTTATCCAA-AAACGCCA
* * *
15839253 CAATATGTAGGGATTTAGCAGCGCTAGTGGATAAAA-GCCGCAAA
1 CAATATGT-GGGCTTTAGCGGTGCTAGT-GA-AAAACGCCGCAAA
15839297 GGTTGATTTC
Statistics
Matches: 130, Mismatches: 22, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
112 6 0.05
113 18 0.14
114 34 0.26
115 68 0.52
116 4 0.03
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (113 bp):
CAATATGTGGGCTTTAGCGGTGCTAGTGAAAAACGCCGCAAAAAGTTATTCTGTTTTAATCAAAA
CGACGCCGTTTTATTAGATTTTTTAGTGGCGTTTATCCAAAAACGCCA
Found at i:15841040 original size:16 final size:16
Alignment explanation
Indices: 15841020--15841091 Score: 99
Period size: 16 Copynumber: 4.5 Consensus size: 16
15841010 CGTTTAGTTG
*
15841020 GCTGTAATGGAATAGG
1 GCTGTAATGGAATAGA
*
15841036 GCTGTAATTGAATAGA
1 GCTGTAATGGAATAGA
*
15841052 GCTGTAATTGAATAGA
1 GCTGTAATGGAATAGA
* *
15841068 GCTATAATGGAAAAGA
1 GCTGTAATGGAATAGA
15841084 GCTGTAAT
1 GCTGTAAT
15841092 AAGTAATTCA
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.38, C:0.07, G:0.28, T:0.28
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:15848546 original size:42 final size:43
Alignment explanation
Indices: 15848478--15848708 Score: 267
Period size: 42 Copynumber: 5.4 Consensus size: 43
15848468 AATATTTTTT
* * **
15848478 TAAAGGTCATGTTCTTTAGCGACGTTTGTGAGAAAAGCGCTGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGAGAAAAGCGCCAC
* *
15848521 TAAAGGTC-TGTTCTATAGTGGCGTTTGTG-GAAAAAGTGCCAC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGAG-AAAAGCGCCAC
*
15848563 TAAAGGTC-TGTTCTATAGCGGCGTTTGT-ATGAAAAGCGCCAT
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGA-GAAAAGCGCCAC
* * * *
15848605 TAAAGGTCATGTTCTTTAGCGGCGTCTCT-AGAAAAAGTGCCAC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGAG-AAAAGCGCCAC
** *
15848648 TAAAGGTCATGTTCTATAGCGGCGTTTGTGA-AAAAAAGCCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGAGAAAAGCGCCAC
15848690 TAAAGGTCATGTTCTATAG
1 TAAAGGTCATGTTCTATAG
15848709 TGGTGTTTTA
Statistics
Matches: 162, Mismatches: 20, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
41 1 0.01
42 98 0.60
43 62 0.38
44 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (43 bp):
TAAAGGTCATGTTCTATAGCGGCGTTTGTGAGAAAAGCGCCAC
Found at i:15848646 original size:85 final size:85
Alignment explanation
Indices: 15848478--15848708 Score: 297
Period size: 85 Copynumber: 2.7 Consensus size: 85
15848468 AATATTTTTT
* * ** *
15848478 TAAAGGTCATGTTCTTTAGCGACGTTTGTGAGAAAAGCGCTGCTAAAGGTCTGTTCTATAGTGGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGAGAAAAGCGCCACTAAAGGTCTGTTCTATAGCGGC
* * *
15848543 GTTTGTGGAAAAAGTGCCAC
66 GTCTCTAGAAAAAGTGCCAC
* *
15848563 TAAAGGTC-TGTTCTATAGCGGCGTTTGT-ATGAAAAGCGCCATTAAAGGTCATGTTCTTTAGCG
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGA-GAAAAGCGCCACTAAAGGTC-TGTTCTATAGCG
15848626 GCGTCTCTAGAAAAAGTGCCAC
64 GCGTCTCTAGAAAAAGTGCCAC
** *
15848648 TAAAGGTCATGTTCTATAGCGGCGTTTGTGA-AAAAAAGCCGCTAAAGGTCATGTTCTATAG
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGAGAAAAGCGCCACTAAAGGTC-TGTTCTATAG
15848709 TGGTGTTTTA
Statistics
Matches: 127, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
83 1 0.01
84 35 0.28
85 70 0.55
86 20 0.16
87 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (85 bp):
TAAAGGTCATGTTCTATAGCGGCGTTTGTGAGAAAAGCGCCACTAAAGGTCTGTTCTATAGCGGC
GTCTCTAGAAAAAGTGCCAC
Found at i:15848932 original size:12 final size:12
Alignment explanation
Indices: 15848915--15848947 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
15848905 CGGCCCGCAC
15848915 ATATTAATTTTT
1 ATATTAATTTTT
15848927 ATATT-ATTTTT
1 ATATTAATTTTT
15848938 ATA-TAATTTT
1 ATATTAATTTT
15848948 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:15849117 original size:30 final size:30
Alignment explanation
Indices: 15849072--15849130 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
15849062 ATTAATAAGC
*
15849072 AAATGTCTCTAAAATAATAAAAAAATTAAA
1 AAATATCTCTAAAATAATAAAAAAATTAAA
* *
15849102 AAATATCTTTAAAATAATAACAAAATTAA
1 AAATATCTCTAAAATAATAAAAAAATTAA
15849131 TAATAAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.63, C:0.07, G:0.02, T:0.29
Consensus pattern (30 bp):
AAATATCTCTAAAATAATAAAAAAATTAAA
Found at i:15849182 original size:14 final size:14
Alignment explanation
Indices: 15849163--15849192 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
15849153 TATACACTAA
15849163 TAGCAACAAAATAG
1 TAGCAACAAAATAG
*
15849177 TAGCAACATAATAG
1 TAGCAACAAAATAG
15849191 TA
1 TA
15849193 AAATGGTAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.53, C:0.13, G:0.13, T:0.20
Consensus pattern (14 bp):
TAGCAACAAAATAG
Found at i:15854926 original size:6 final size:6
Alignment explanation
Indices: 15854915--15854952 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
15854905 AGCCTAAACC
* *
15854915 TTTTGT TTTTGT TTTTGT TGTTG- TTTTGT TGTTGT TTT
1 TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTT
15854953 GTTATCATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
5 4 0.15
6 23 0.85
ACGTcount: A:0.00, C:0.00, G:0.21, T:0.79
Consensus pattern (6 bp):
TTTTGT
Found at i:15854941 original size:11 final size:11
Alignment explanation
Indices: 15854915--15854955 Score: 64
Period size: 11 Copynumber: 3.6 Consensus size: 11
15854905 AGCCTAAACC
*
15854915 TTTTGTTTTTG
1 TTTTGTTGTTG
15854926 TTTTTGTTGTTG
1 -TTTTGTTGTTG
15854938 TTTTGTTGTTG
1 TTTTGTTGTTG
15854949 TTTTGTT
1 TTTTGTT
15854956 ATCATTTTGC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
11 18 0.64
12 10 0.36
ACGTcount: A:0.00, C:0.00, G:0.22, T:0.78
Consensus pattern (11 bp):
TTTTGTTGTTG
Found at i:15854963 original size:22 final size:22
Alignment explanation
Indices: 15854915--15854991 Score: 64
Period size: 22 Copynumber: 3.5 Consensus size: 22
15854905 AGCCTAAACC
* * *
15854915 TTTTGTTTTTGTTTTTGTTGTTG
1 TTTTGTTGTTG-TTTTGTTATTA
*
15854938 TTTTGTTGTTGTTTTGTTATCA
1 TTTTGTTGTTGTTTTGTTATTA
* * * * *
15854960 TTTTGCTATTATATTGCTATTA
1 TTTTGTTGTTGTTTTGTTATTA
15854982 TTTTGTTGTT
1 TTTTGTTGTT
15854992 ATCGTTTGGA
Statistics
Matches: 42, Mismatches: 12, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
22 32 0.76
23 10 0.24
ACGTcount: A:0.09, C:0.04, G:0.17, T:0.70
Consensus pattern (22 bp):
TTTTGTTGTTGTTTTGTTATTA
Found at i:15854993 original size:11 final size:11
Alignment explanation
Indices: 15854927--15854993 Score: 53
Period size: 11 Copynumber: 6.1 Consensus size: 11
15854917 TTGTTTTTGT
* *
15854927 TTTTGTTGTTG
1 TTTTGTTATTA
* *
15854938 TTTTGTTGTTG
1 TTTTGTTATTA
*
15854949 TTTTGTTATCA
1 TTTTGTTATTA
*
15854960 TTTTGCTATTA
1 TTTTGTTATTA
* *
15854971 TATTGCTATTA
1 TTTTGTTATTA
*
15854982 TTTTGTTGTTA
1 TTTTGTTATTA
15854993 T
1 T
15854994 CGTTTGGATA
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 47 1.00
ACGTcount: A:0.12, C:0.04, G:0.16, T:0.67
Consensus pattern (11 bp):
TTTTGTTATTA
Found at i:15864167 original size:89 final size:89
Alignment explanation
Indices: 15864014--15864301 Score: 402
Period size: 89 Copynumber: 3.3 Consensus size: 89
15864004 CTGCAACTAC
* * * * * *
15864014 TCCACTGCAACTTCAGAGAGATAAGAAT-TGCAAATTACAGCCTGTTACCCTACCACTTAAGGGG
1 TCCACTGCAACTTCAGGGAGACAAG-ATCTGCAATTTTCAGCCTGTTACCCTACTACTTAGGGGG
15864078 TTAAGGCTTGCTTTCTTTGATTTGT
65 TTAAGGCTTGCTTTCTTTGATTTGT
15864103 TCCACTGCAACTTCAGGGAGACAAGATCTGCAATTTTCAGCCTGTTACCCTACTACTTAGGGGGT
1 TCCACTGCAACTTCAGGGAGACAAGATCTGCAATTTTCAGCCTGTTACCCTACTACTTAGGGGGT
*
15864168 TAAGGCTTACTTTCTTTGATTTGT
66 TAAGGCTTGCTTTCTTTGATTTGT
* * * *
15864192 TCCACTGCAACTTCAAGGAGACAAGATCCGCAATCTTCAGCTTGTTA-CCTACTACTTAGGGGGT
1 TCCACTGCAACTTCAGGGAGACAAGATCTGCAATTTTCAGCCTGTTACCCTACTACTTAGGGGGT
* * *
15864256 TAAGGCTTGC-TTCTTCGATCTGC
66 TAAGGCTTGCTTTCTTTGATTTGT
* *
15864279 TCCACTGCAACTTTATGGAGACA
1 TCCACTGCAACTTCAGGGAGACA
15864302 TGGTTCATGT
Statistics
Matches: 181, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
87 31 0.17
88 28 0.15
89 122 0.67
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.32
Consensus pattern (89 bp):
TCCACTGCAACTTCAGGGAGACAAGATCTGCAATTTTCAGCCTGTTACCCTACTACTTAGGGGGT
TAAGGCTTGCTTTCTTTGATTTGT
Found at i:15864486 original size:89 final size:90
Alignment explanation
Indices: 15864013--15864486 Score: 357
Period size: 89 Copynumber: 5.3 Consensus size: 90
15864003 ACTGCAACTA
* ** * * *
15864013 CTCCACTGCAACTTC-AGAGAGATAAGAAT-TGCA-AATTACAGCCTGTTACCCTACCACTTAAG
1 CTCCACTGCAACTTCAAG-GAGACAAG-ATCTGCATGCTTTCAGCCTGTTACCCTACTACTTAGG
* *
15864075 GGGTTAAGGCTTGCTTTCTTTGATTTG
64 GGGTTAAGGCTTACTGTCTTTGATTTG
* *
15864102 TTCCACTGCAACTTCAGGGAGACAAGATCTGCAAT--TTTCAGCCTGTTACCCTACTACTTAGGG
1 CTCCACTGCAACTTCAAGGAGACAAGATCTGC-ATGCTTTCAGCCTGTTACCCTACTACTTAGGG
*
15864165 GGTTAAGGCTTACTTTCTTTGATTTG
65 GGTTAAGGCTTACTGTCTTTGATTTG
* * *
15864191 TTCCACTGCAACTTCAAGGAGACAAGATCCGCAAT-C-TTCAGCTTGTTA-CCTACTACTTAGGG
1 CTCCACTGCAACTTCAAGGAGACAAGATCTGC-ATGCTTTCAGCCTGTTACCCTACTACTTAGGG
* * *
15864253 GGTTAAGGCTTGCT-TCTTCGATCTG
65 GGTTAAGGCTTACTGTCTTTGATTTG
* * * * * * *** *
15864278 CTCCACTGCAACTTTATGGAGACATGGT-T-CATGTATTTTATATTGCTCTA--CTACAACTTTA
1 CTCCACTGCAACTTCAAGGAGACAAGATCTGCATG-CTTTCAGCCTG-T-TACCCTACTAC-TTA
* * * * * * ** **
15864339 GAGAGATAAGGATT-GTGACTCCGATCCG
62 GGGGGTTAAGGCTTACTGTCTTTGATTTG
* * * * *
15864367 ATCTACTGTAACTTCAAGGAGATAAGATCTGC-TGCTTTCGGCCTGTTACCCTACTACTTAGGGG
1 CTCCACTGCAACTTCAAGGAGACAAGATCTGCATGCTTTCAGCCTGTTACCCTACTACTTAGGGG
* *
15864431 GCTAAGGCTCACTGTCTTTGATTTG
66 GTTAAGGCTTACTGTCTTTGATTTG
**
15864456 CTCCACTGCAACTTCAAGGAGGTAAGATCTG
1 CTCCACTGCAACTTCAAGGAGACAAGATCTG
15864487 TGAATTCACT
Statistics
Matches: 306, Mismatches: 62, Indels: 34
0.76 0.15 0.08
Matches are distributed among these distances:
84 2 0.01
85 1 0.00
87 40 0.13
88 50 0.16
89 207 0.68
90 5 0.02
91 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.32
Consensus pattern (90 bp):
CTCCACTGCAACTTCAAGGAGACAAGATCTGCATGCTTTCAGCCTGTTACCCTACTACTTAGGGG
GTTAAGGCTTACTGTCTTTGATTTG
Found at i:15879414 original size:38 final size:38
Alignment explanation
Indices: 15879363--15879438 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
15879353 AGGAGCCCAA
15879363 CAAGCAAGTGCCATCAGTGTCTCAAAGGAAACGATCTT
1 CAAGCAAGTGCCATCAGTGTCTCAAAGGAAACGATCTT
15879401 CAAGCAAGTGCCATCAGTGTCTCAAAGGAAACGATCTT
1 CAAGCAAGTGCCATCAGTGTCTCAAAGGAAACGATCTT
15879439 TACTTTGTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.21
Consensus pattern (38 bp):
CAAGCAAGTGCCATCAGTGTCTCAAAGGAAACGATCTT
Found at i:15881893 original size:3 final size:3
Alignment explanation
Indices: 15881885--15881912 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
15881875 AACAAATCCA
15881885 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
15881913 GACAAATCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:15884713 original size:16 final size:16
Alignment explanation
Indices: 15884680--15884709 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15884670 CATGTGCCTT
15884680 TTTTTTAAATTATTTA
1 TTTTTTAAATTATTTA
15884696 TTTTTTAAA-TATTT
1 TTTTTTAAATTATTT
15884710 TATTATATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTTTTAAATTATTTA
Found at i:15886903 original size:22 final size:22
Alignment explanation
Indices: 15886878--15886919 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
15886868 AGAACGAAAT
*
15886878 ATTTTTACTTATTTTTATAAGA
1 ATTTTTACTCATTTTTATAAGA
15886900 ATTTTTACTCATTTTTATAA
1 ATTTTTACTCATTTTTATAA
15886920 TTTTAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.60
Consensus pattern (22 bp):
ATTTTTACTCATTTTTATAAGA
Found at i:15889701 original size:36 final size:36
Alignment explanation
Indices: 15889648--15889943 Score: 152
Period size: 36 Copynumber: 8.5 Consensus size: 36
15889638 TCATTAACTC
* * *
15889648 TCAG-AACAATTATTTATTCAGTAATAGTCAGTTAT
1 TCAGTAACAATCAATTATTCAGTAATAATCAGTTAT
* * * *
15889683 TCGGTAACAATCAATTATTTAATAATAACCAGTTAT
1 TCAGTAACAATCAATTATTCAGTAATAATCAGTTAT
* * * *
15889719 TTAGTATCGATC-A--ATT--G-----ATCGGTTAT
1 TCAGTAACAATCAATTATTCAGTAATAATCAGTTAT
* * *
15889745 CCAGTAACAGTCAATTATTCAGTAA-AATCAGATAT
1 TCAGTAACAATCAATTATTCAGTAATAATCAGTTAT
* ** *
15889780 TCAGTAACAATTAAGTTATTCAGTAGCAGTCA-TTCAT
1 TCAGTAACAATCAA-TTATTCAGTAATAATCAGTT-AT
* * *
15889817 TCAGTGACAATCAATTATTCAGTAATGATCAATTAT
1 TCAGTAACAATCAATTATTCAGTAATAATCAGTTAT
* * * * * *
15889853 TCAGTAATATTCAGTTATTCAGTAACAGTCTA-ATAT
1 TCAGTAACAATCAATTATTCAGTAATAATC-AGTTAT
* * * * * *
15889889 CCAGTAACAATCAATTATCCGGTAACAGTCAATTAT
1 TCAGTAACAATCAATTATTCAGTAATAATCAGTTAT
* *
15889925 TCAGTAATAATCAGTTATT
1 TCAGTAACAATCAATTATT
15889944 TTATACCTTT
Statistics
Matches: 193, Mismatches: 52, Indels: 31
0.70 0.19 0.11
Matches are distributed among these distances:
26 14 0.07
27 1 0.01
29 3 0.02
31 1 0.01
33 3 0.02
35 23 0.12
36 127 0.66
37 21 0.11
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.36
Consensus pattern (36 bp):
TCAGTAACAATCAATTATTCAGTAATAATCAGTTAT
Found at i:15889767 original size:18 final size:18
Alignment explanation
Indices: 15889741--15889931 Score: 167
Period size: 18 Copynumber: 10.6 Consensus size: 18
15889731 AATTGATCGG
*
15889741 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
*
15889759 TTATTCAGTAA-AATCAGA
1 TTATTCAGTAACAGTCA-A
* *
15889777 -TATTCAGTAACAATTAA
1 TTATTCAGTAACAGTCAA
*
15889794 GTTATTCAGTAGCAGTC-A
1 -TTATTCAGTAACAGTCAA
* *
15889812 TTCATTCAGTGACAATCAA
1 TT-ATTCAGTAACAGTCAA
*
15889831 TTATTCAGTAA-TGATCAA
1 TTATTCAGTAACAG-TCAA
* * *
15889849 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAGTCAA
15889867 TTATTCAGTAACAGTCTAA
1 TTATTCAGTAACAGTC-AA
* *
15889886 -TATCCAGTAACAATCAA
1 TTATTCAGTAACAGTCAA
* *
15889903 TTATCCGGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
15889921 TTATTCAGTAA
1 TTATTCAGTAA
15889932 TAATCAGTTA
Statistics
Matches: 139, Mismatches: 24, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
17 19 0.14
18 104 0.75
19 16 0.12
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAA
Found at i:15889819 original size:54 final size:53
Alignment explanation
Indices: 15889741--15889937 Score: 209
Period size: 54 Copynumber: 3.7 Consensus size: 53
15889731 AATTGATCGG
*
15889741 TTATCCAGTAACAGTCAATTATTCAGTAA-AATCAGATATTCAGTAACAATTAA
1 TTATCCAGTAACAGTCAATTATTCAGTAACAATCA-ATATTCAGTAACAATCAA
* * * **
15889794 GTTATTCAGTAGCAGTC-ATTCATTCAGTGACAATCAATTATTCAGTAATGATCAA
1 -TTATCCAGTAACAGTCAATT-ATTCAGTAACAATCAA-TATTCAGTAACAATCAA
* * * * * *
15889849 TTATTCAGTAATATTCAGTTATTCAGTAACAGTCTAATATCCAGTAACAATCAA
1 TTATCCAGTAACAGTCAATTATTCAGTAACAATC-AATATTCAGTAACAATCAA
* *
15889903 TTATCCGGTAACAGTCAATTATTCAGTAATAATCA
1 TTATCCAGTAACAGTCAATTATTCAGTAACAATCA
15889938 GTTATTTTAT
Statistics
Matches: 116, Mismatches: 22, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
53 4 0.03
54 89 0.77
55 23 0.20
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (53 bp):
TTATCCAGTAACAGTCAATTATTCAGTAACAATCAATATTCAGTAACAATCAA
Found at i:15889872 original size:72 final size:71
Alignment explanation
Indices: 15889742--15889943 Score: 237
Period size: 72 Copynumber: 2.8 Consensus size: 71
15889732 ATTGATCGGT
* * * *
15889742 TATCCAGTAACAGTCAATTATTCAGTAAAATCAGA-TATTCAGTAACAATTAAGTTATTCAGTAG
1 TATCCAGTAACAATCAATTATTCAGTAAAATCA-ATTATTCAGTAA-TATTCAGTTATTCAGTAA
*
15889806 CAGTC-AT
64 CAGTCTAA
* * *
15889813 TCATTCAGTGACAATCAATTATTCAGTAATGATCAATTATTCAGTAATATTCAGTTATTCAGTAA
1 T-ATCCAGTAACAATCAATTATTCAGTAA-AATCAATTATTCAGTAATATTCAGTTATTCAGTAA
15889878 CAGTCTAA
64 CAGTCTAA
* * * *
15889886 TATCCAGTAACAATCAATTATCCGGTAACAGTCAATTATTCAGTAATAATCAGTTATT
1 TATCCAGTAACAATCAATTATTCAGTAA-AATCAATTATTCAGTAATATTCAGTTATT
15889944 TTATACCTTT
Statistics
Matches: 111, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
71 1 0.01
72 94 0.85
73 16 0.14
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (71 bp):
TATCCAGTAACAATCAATTATTCAGTAAAATCAATTATTCAGTAATATTCAGTTATTCAGTAACA
GTCTAA
Found at i:15892397 original size:47 final size:47
Alignment explanation
Indices: 15892328--15892444 Score: 164
Period size: 47 Copynumber: 2.5 Consensus size: 47
15892318 GCGTTACAGT
* * * * *
15892328 AACAGTAGCAGTACGGTACACAGAGTACCTCATCGGAACAAATCTGG
1 AACAGTAACAGTACGGTACACAGAGTACCTCACCGAAACAAATCCGA
*
15892375 AACAGTAACAATACGGTACACAGAGTACCTCACCGAAACAAATCCGA
1 AACAGTAACAGTACGGTACACAGAGTACCTCACCGAAACAAATCCGA
15892422 AACAGTAACAGTAACGGTA-ACAG
1 AACAGTAACAGT-ACGGTACACAG
15892445 TAACAATATC
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
47 56 0.90
48 6 0.10
ACGTcount: A:0.42, C:0.24, G:0.20, T:0.15
Consensus pattern (47 bp):
AACAGTAACAGTACGGTACACAGAGTACCTCACCGAAACAAATCCGA
Found at i:15892490 original size:12 final size:12
Alignment explanation
Indices: 15892473--15892497 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15892463 AGTACCGAAT
15892473 CGGTAACAGTAA
1 CGGTAACAGTAA
15892485 CGGTAACAGTAA
1 CGGTAACAGTAA
15892497 C
1 C
15892498 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:15894060 original size:20 final size:18
Alignment explanation
Indices: 15894026--15894070 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 18
15894016 AAACTTTGAA
15894026 TTTTCCCTTTCTTCTTTC
1 TTTTCCCTTTCTTCTTTC
15894044 TTTTCTCCTTTCTTTCTTTC
1 TTTTC-CCTTTC-TTCTTTC
15894064 -TTTCCCT
1 TTTTCCCT
15894071 GCTTTTCGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.32
19 10 0.40
20 7 0.28
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTCCCTTTCTTCTTTC
Found at i:15895014 original size:29 final size:29
Alignment explanation
Indices: 15894972--15895029 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
15894962 ATACCTTAAG
*
15894972 TGGATGTATTTAGGATTAGGGTAAACTTA
1 TGGATATATTTAGGATTAGGGTAAACTTA
*
15895001 TGGATATATTTAGGATTAGGGTGAACTTA
1 TGGATATATTTAGGATTAGGGTAAACTTA
15895030 CTCATATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.31, C:0.03, G:0.28, T:0.38
Consensus pattern (29 bp):
TGGATATATTTAGGATTAGGGTAAACTTA
Found at i:15895036 original size:29 final size:29
Alignment explanation
Indices: 15894978--15895037 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
15894968 TAAGTGGATG
*
15894978 TATTTAGGATTAGGGTAAACTTATGGATA
1 TATTTAGGATTAGGGTAAACTTATGCATA
*
15895007 TATTTAGGATTAGGGTGAACTTACT-CATA
1 TATTTAGGATTAGGGTAAACTTA-TGCATA
15895036 TA
1 TA
15895038 ATTATTAGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 27 0.96
30 1 0.04
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.38
Consensus pattern (29 bp):
TATTTAGGATTAGGGTAAACTTATGCATA
Found at i:15895142 original size:20 final size:21
Alignment explanation
Indices: 15895108--15895161 Score: 60
Period size: 19 Copynumber: 2.7 Consensus size: 21
15895098 AATTATAAAT
*
15895108 AAATGAATA-TTTATTTTTTTA
1 AAAT-AATATTTTATTTTATTA
*
15895129 ACATAA-ATTTTA-TTTATTA
1 AAATAATATTTTATTTTATTA
15895148 AAATAATATTTTAT
1 AAATAATATTTTAT
15895162 AAATAAAACA
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
19 12 0.44
20 12 0.44
21 3 0.11
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (21 bp):
AAATAATATTTTATTTTATTA
Found at i:15898437 original size:48 final size:49
Alignment explanation
Indices: 15898383--15898700 Score: 289
Period size: 48 Copynumber: 6.6 Consensus size: 49
15898373 GTGAATTGTA
* * * *
15898383 GATGCCATGTTCCAAACATGGTCTTACACTAGCT-TACGTGTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATATCGAGGCC
* * * * ** **
15898431 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCT-CGTCTTAATACC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATATCGAGGCC
* * *
15898479 GATGCCATGTCCCAGACATGGTCTTACAATGGCTCT-CATAAT-GTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACAT-ATCGAGGCC
* * *
15898527 GATGTCATGTCCCAGACATGGTCTTACACTAG-TGC-ACATATCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCT-CTACATATCGAGGCC
* *
15898575 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAACATC-A--CC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-AC-ATATCGAGGCC
* * * * *
15898623 GATGCCATGTTCCAAACATGGTCTTACACTAACTCT-TATAAT-GTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACAT-ATCGAGGCC
15898671 GATGCCATGTCCCAGACATGGTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
15898701 GGCACACATA
Statistics
Matches: 224, Mismatches: 33, Indels: 26
0.79 0.12 0.09
Matches are distributed among these distances:
45 1 0.00
46 2 0.01
47 3 0.01
48 208 0.93
49 3 0.01
50 3 0.01
51 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATATCGAGGCC
Found at i:15898547 original size:96 final size:94
Alignment explanation
Indices: 15898427--15898703 Score: 342
Period size: 96 Copynumber: 2.9 Consensus size: 94
15898417 TACGTGTCGA
*
15898427 GGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCGTCTTAATACCGATGCCATGTCCC
1 GGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTC-T-TTAATGCCGATGCCATGTCCC
* * **
15898492 AGACATGGTCTTACAATGGCTCTCATAATGT
64 AGACATGGTCTTACACTGGCTCTCACAACAT
* * * * *
15898523 GGCCGATGTCATGTCCCAGACATGGTCTTACACTAG-TGCACATATCAATGCCGATGCCATGTCC
1 GGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCT-CTC-T-TTAATGCCGATGCCATGTCC
15898587 CAGACATGGTCTTACACTGGCTCTCACAACAT
63 CAGACATGGTCTTACACTGGCTCTCACAACAT
** * *
15898619 CACCGATGCCATGTTCCAAACATGGTCTTACACTAACTCT-TATAATGTGGCCGATGCCATGTCC
1 GGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCTTTAA--T-GCCGATGCCATGTCC
15898683 CAGACATGGTCTTACACTGGC
63 CAGACATGGTCTTACACTGGC
15898704 ACACATATCA
Statistics
Matches: 155, Mismatches: 21, Indels: 10
0.83 0.11 0.05
Matches are distributed among these distances:
93 2 0.01
94 1 0.01
95 2 0.01
96 149 0.96
97 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (94 bp):
GGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCTTTAATGCCGATGCCATGTCCCAG
ACATGGTCTTACACTGGCTCTCACAACAT
Found at i:15898648 original size:144 final size:144
Alignment explanation
Indices: 15898383--15898713 Score: 425
Period size: 144 Copynumber: 2.3 Consensus size: 144
15898373 GTGAATTGTA
* * * * * * *
15898383 GATGCCATGTTCCAAACATGGTCTTACACTAGCTTACGTGTCGAGGCCGATGCCATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCGATGCCATGTCCCAAAC
* * * **
15898448 ATGGTCTTACACTAGCTCTCGTCTTAATACCGATGCCATGTCCCAGACATGGTCTTACAATGGCT
66 ATGGTCTTACACTAGCTCTCGACTAAATACCGATGCCATGTCCCAAACATGGTCTTACAATAACT
15898513 CTCATAATGTGGCC
131 CTCATAATGTGGCC
* * *
15898527 GATGTCATGTCCCAGACATGGTCTTACACTAG-TGCACATATCAATGCCGATGCCATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCT-CACATATCAAGGCCGATGCCATGTCCCAAA
* * *
15898591 CATGGTCTTACACTGGCTCTC-AC-AACATCACCGATGCCATGTTCCAAACATGGTCTTACACTA
65 CATGGTCTTACACTAGCTCTCGACTAA-AT-ACCGATGCCATGTCCCAAACATGGTCTTACAATA
*
15898654 ACTCTTATAATGTGGCC
128 ACTCTCATAATGTGGCC
* *
15898671 GATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCA
15898714 CCCAAATGTC
Statistics
Matches: 161, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
142 1 0.01
143 4 0.02
144 156 0.97
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (144 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCGATGCCATGTCCCAAAC
ATGGTCTTACACTAGCTCTCGACTAAATACCGATGCCATGTCCCAAACATGGTCTTACAATAACT
CTCATAATGTGGCC
Found at i:15905016 original size:17 final size:18
Alignment explanation
Indices: 15904992--15905066 Score: 75
Period size: 20 Copynumber: 4.1 Consensus size: 18
15904982 TCATTTTTTC
15904992 TTAT-TTTATTATT-TTA
1 TTATATTTATTATTATTA
15905008 TTATATTTATTTTATTATTA
1 TTATATTTA--TTATTATTA
*
15905028 TTAGTATATTATTATTCTTA
1 TTA-TAT-TTATTATTATTA
*
15905048 TTA-ATGTATTATTATTA
1 TTATATTTATTATTATTA
15905065 TT
1 TT
15905067 TTCTACTTTA
Statistics
Matches: 50, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
16 4 0.08
17 16 0.32
18 2 0.04
19 5 0.10
20 17 0.34
21 3 0.06
22 3 0.06
ACGTcount: A:0.29, C:0.01, G:0.03, T:0.67
Consensus pattern (18 bp):
TTATATTTATTATTATTA
Found at i:15905083 original size:3 final size:3
Alignment explanation
Indices: 15904877--15905066 Score: 105
Period size: 3 Copynumber: 64.7 Consensus size: 3
15904867 AATTTTAATT
* * *
15904877 TTA TTA TTA TTA CTA TTA TTA TTA CTA TTA CTT- TTA TAA TTTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA -TTA TTA
* * * * *
15904923 TTG TTA TTG TTA CTA TT- TCTA TTA TTG TT- TTT TTA TTA TT- TATA
1 TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA T-TA
* * * * *
15904967 TTA TTG TTG TTG TTA TCA TT- TT- TTC TTA TT- TTA TTA TT- TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
15905011 -TA TTTA TT- TTA TTA TTA TTA GTA -TA TTA TTA TTC TTA TTAA TGTA
1 TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A T-TA
15905056 TTA TTA TTA TT
1 TTA TTA TTA TT
15905067 TTCTACTTTA
Statistics
Matches: 148, Mismatches: 22, Indels: 34
0.73 0.11 0.17
Matches are distributed among these distances:
2 20 0.14
3 115 0.78
4 12 0.08
5 1 0.01
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:15905188 original size:17 final size:16
Alignment explanation
Indices: 15905166--15905202 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
15905156 TATTATTACC
15905166 TATTACCCTTTTATTAT
1 TATTACCCTTTTATT-T
*
15905183 TATTACCTTTTTATTT
1 TATTACCCTTTTATTT
15905199 TATT
1 TATT
15905203 TTACTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.22, C:0.14, G:0.00, T:0.65
Consensus pattern (16 bp):
TATTACCCTTTTATTT
Found at i:15907851 original size:46 final size:46
Alignment explanation
Indices: 15907704--15907852 Score: 165
Period size: 46 Copynumber: 3.2 Consensus size: 46
15907694 AGATCAAATT
** * * *
15907704 GATTGAAGAAGCCACAAAATCCTATACTCCTGAGTTGCAGTGGGATG
1 GATTGAAGAAGATAC-AAATCCTATACCCCTAAATTGCAGTGGGATG
* * * *
15907751 GATTGAAGAAGGTACAAATCCTTTACCCCTAAATTGCAAT-GGAAG
1 GATTGAAGAAGATACAAATCCTATACCCCTAAATTGCAGTGGGATG
* *
15907796 GAATTGAAGAAGATACGAATCCTATACCCCTAACTTGCAGTGGGATG
1 G-ATTGAAGAAGATACAAATCCTATACCCCTAAATTGCAGTGGGATG
*
15907843 GATGGAAGAA
1 GATTGAAGAA
15907853 ACCAAATTTT
Statistics
Matches: 85, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
45 5 0.06
46 62 0.73
47 18 0.21
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (46 bp):
GATTGAAGAAGATACAAATCCTATACCCCTAAATTGCAGTGGGATG
Found at i:15908370 original size:45 final size:43
Alignment explanation
Indices: 15908247--15908375 Score: 150
Period size: 44 Copynumber: 2.9 Consensus size: 43
15908237 TCATCATGGC
* *
15908247 GAATCTTATCTCCCTGAAGTTGTAGTAGAGTAGATTGAAGCCA
1 GAATCTTATCTCCCTGAAGTTGTAGTAGAGTAGATTAAAGACA
* * *
15908290 CAAGTCTTATCTCCCTGAAGTTGCAGCAGAGTAGATTAAAGACA
1 GAA-TCTTATCTCCCTGAAGTTGTAGTAGAGTAGATTAAAGACA
* * * *
15908334 GTGAATCTTATTTCCCTGAAGTTGTAATGGAATAGATTAAAG
1 --GAATCTTATCTCCCTGAAGTTGTAGTAGAGTAGATTAAAG
15908376 CTACAAACTA
Statistics
Matches: 71, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
43 2 0.03
44 36 0.51
45 31 0.44
46 2 0.03
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.30
Consensus pattern (43 bp):
GAATCTTATCTCCCTGAAGTTGTAGTAGAGTAGATTAAAGACA
Found at i:15908527 original size:185 final size:185
Alignment explanation
Indices: 15908251--15908931 Score: 839
Period size: 185 Copynumber: 3.7 Consensus size: 185
15908241 CATGGCGAAT
* * * * *
15908251 CTTATCTCCCTGAAGTTGTAGTAGAGTAGATTGAAGCCACA-AGTCTTATCTCCCTGAAGTTGCA
1 CTTATCTCCCTAAAGTTGTAGTGGAGCAGGTTGAA--CATAGA-TCTTATCTCCCTGAAGTTGCA
* * * * * * * *
15908315 GCAGAGTAGATTAAAGACAGTGAATCTTATTTCCCTGAAGTTGTAATGGAATAGATTAAAGCTAC
63 ACGGAGTAGATCAAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAAAAGATTAAAGCTAC
* * * *
15908380 AAACTATGGCCAATCTTATCTCCTTGTAGTTGCAGTGGAGTAGATTGAAGCCATTAAC
128 AAACCATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCCATTAAC
* * * *
15908438 CTTCTCTCCCTGAAGTTGTAGTGGAGCAGGTTGAATATAGGTCTTATCTCCCTGAAGTTGCAACG
1 CTTATCTCCCTAAAGTTGTAGTGGAGCAGGTTGAACATAGATCTTATCTCCCTGAAGTTGCAACG
* *
15908503 GAGCAGA-CTAAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAAAAGATTAAAACTACAA
66 GAGTAGATC-AAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAAAAGATTAAAGCTACAA
* * * *
15908567 ACCATGGCGAATCTTATCTCCCTGAAGTTACAATGGAGCAGATTGAAGCC-TCTAAC
130 ACCATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCCAT-TAAC
* * * * **
15908623 CTTATTTCCCTAAAGTTGCAGTGGAACAGGTTGAACATAGATCTTATCTCCCTGAAGTTGTAGTG
1 CTTATCTCCCTAAAGTTGTAGTGGAGCAGGTTGAACATAGATCTTATCTCCCTGAAGTTGCAACG
* *
15908688 GAGTAGATCAAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTACAAA
66 GAGTAGATCAAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAAAAGATTAAAGCTACAAA
* *
15908753 CCATGGCAAATCTTATCTCCCTCAAGTTGCAGTGGAGTAGATTGAAGCCACTAAC
131 CCATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCCATTAAC
* * *** *
15908808 CTTATCTCCCTAAAGTTGTAGTGGAGTAGGTTGAATATAGATCTTATCTTTTTGAAGTTGCAATG
1 CTTATCTCCCTAAAGTTGTAGTGGAGCAGGTTGAACATAGATCTTATCTCCCTGAAGTTGCAACG
* ** * * *
15908873 GAGTAGATCGAAGATAGTAAATCTTATTTCCCT-AGCGTTGCAGTGGAACAGATTGAAGC
66 GAGTAGATCAAAGATAGCGAATCTTATTTCCCTGA-AGTTGCAGTGGAAAAGATTAAAGC
15908932 CACCATCCTT
Statistics
Matches: 430, Mismatches: 58, Indels: 14
0.86 0.12 0.03
Matches are distributed among these distances:
184 2 0.00
185 396 0.92
186 1 0.00
187 31 0.07
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (185 bp):
CTTATCTCCCTAAAGTTGTAGTGGAGCAGGTTGAACATAGATCTTATCTCCCTGAAGTTGCAACG
GAGTAGATCAAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAAAAGATTAAAGCTACAAA
CCATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCCATTAAC
Found at i:15908548 original size:87 final size:86
Alignment explanation
Indices: 15908444--15908929 Score: 278
Period size: 87 Copynumber: 5.3 Consensus size: 86
15908434 TAACCTTCTC
* * * *
15908444 TCCCTGAAGTTGTAGTGGAGCAGGTTGAATATAGGTCTTATCTCCCTGAAGTTGCAACGGAGCAG
1 TCCCTGAAGTTGCAGTGGAACAGATTGAATATAGGTCTTATCTCCCTGAAGTTGCAATGGAGCAG
15908509 ACTAAAGATAGCGAATCTTATT
66 A-TAAAGATAGCGAATCTTATT
* * *
15908531 TCCCTGAAGTTGCAGTGGAAAAGATTAAAACTACAAACCATGGCGAATCTTATCTCCCTGAAGTT
1 TCCCTGAAGTTGCAGTGGAACAGATT-GAA-T-------ATAG-G--TCTTATCTCCCTGAAGTT
* * * * *
15908596 ACAATGGAGCAGATTGAAGCCT--CTAACCTTATT
54 GCAATGGAGCAGA-TAAAG-ATAGCGAATCTTATT
* * * * * * *
15908629 TCCCTAAAGTTGCAGTGGAACAGGTTGAACATAGATCTTATCTCCCTGAAGTTGTAGTGGAGTAG
1 TCCCTGAAGTTGCAGTGGAACAGATTGAATATAGGTCTTATCTCCCTGAAGTTGCAATGGAGCAG
15908694 ATCAAAGATAGCGAATCTTATT
66 AT-AAAGATAGCGAATCTTATT
* *
15908716 TCCCTGAAGTTGCAGTGGAACAGATTGAAGCTACAAACCATGGCAAATCTTATCTCCCTCAAGTT
1 TCCCTGAAGTTGCAGTGGAACAGATTGAA--T----A-TA-GG----TCTTATCTCCCTGAAGTT
* * * ** * * *
15908781 GCAGTGGAGTAGATTGAAGCCA-CTAACCTTATC
54 GCAATGGAGCAGA-TAAAGATAGCGAATCTTATT
* * ** * * *** *
15908814 TCCCTAAAGTTGTAGTGGAGTAGGTTGAATATAGATCTTATCTTTTTGAAGTTGCAATGGAGTAG
1 TCCCTGAAGTTGCAGTGGAACAGATTGAATATAGGTCTTATCTCCCTGAAGTTGCAATGGAGCAG
* **
15908879 ATCGAAGATAGTAAATCTTATT
66 AT-AAAGATAGCGAATCTTATT
*
15908901 TCCCT-AGCGTTGCAGTGGAACAGATTGAA
1 TCCCTGA-AGTTGCAGTGGAACAGATTGAA
15908930 GCCACCATCC
Statistics
Matches: 303, Mismatches: 64, Indels: 64
0.70 0.15 0.15
Matches are distributed among these distances:
85 3 0.01
86 62 0.20
87 87 0.29
88 2 0.01
89 4 0.01
90 1 0.00
91 1 0.00
92 1 0.00
93 1 0.00
94 1 0.00
95 1 0.00
96 4 0.01
97 3 0.01
98 64 0.21
99 66 0.22
100 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (86 bp):
TCCCTGAAGTTGCAGTGGAACAGATTGAATATAGGTCTTATCTCCCTGAAGTTGCAATGGAGCAG
ATAAAGATAGCGAATCTTATT
Found at i:15910400 original size:28 final size:29
Alignment explanation
Indices: 15910286--15910403 Score: 106
Period size: 28 Copynumber: 4.2 Consensus size: 29
15910276 CATTTCTTAA
* *
15910286 ATTATTA-TACTATTTTATTATTAAAATTA
1 ATTATTATTACTA-TTTATTATTATAATTT
* *
15910315 ATTAATT-TTA-TTTTTATTATTA-ATTTT
1 ATT-ATTATTACTATTTATTATTATAATTT
* *
15910342 ATTATTATTACTATTTATTATTATTA-CT
1 ATTATTATTACTATTTATTATTATAATTT
15910370 ATTATTATTACTA-TTACTT-TTATAATTT
1 ATTATTATTACTATTTA-TTATTATAATTT
15910398 ATTATT
1 ATTATT
15910404 GTTATTGTTA
Statistics
Matches: 73, Mismatches: 9, Indels: 15
0.75 0.09 0.15
Matches are distributed among these distances:
26 3 0.04
27 17 0.23
28 44 0.60
29 4 0.05
30 5 0.07
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (29 bp):
ATTATTATTACTATTTATTATTATAATTT
Found at i:15910524 original size:25 final size:25
Alignment explanation
Indices: 15910321--15910524 Score: 79
Period size: 25 Copynumber: 8.1 Consensus size: 25
15910311 ATTAATTAAT
*
15910321 TTTATTTTTATTATTAATTTTAT-TA
1 TTTA-TTTTATTATTATTTTTATATA
* * *
15910346 -TTATTACTATTTATTATTATTA-CTA
1 TTTATT-TTA-TTATTATTTTTATATA
* *
15910371 -TTATTATTACTATTACTTTTATA-A
1 TTTATT-TTATTATTATTTTTATATA
* *
15910395 TTTA--TTATTGTTATTGTTACTAT-
1 TTTATTTTATTATTATTTTTA-TATA
* *
15910418 TTCTATTATTGTT-TTATTATTAT-TA
1 TT-TATT-TTATTATTATTTTTATATA
* * * *
15910443 TTTATATTATTGTTGTTGTTATCATTA
1 TTTATTTTATTATTATTTTTAT-A-TA
*
15910470 TTCCTTATTTTATTATTATTTTTTTATA
1 -T--TTATTTTATTATTATTTTTATATA
15910498 TTTATTTTATTATTATTTTCTAT-TA
1 TTTATTTTATTATTATTTT-TATATA
15910523 TT
1 TT
15910525 GTTAATATTA
Statistics
Matches: 135, Mismatches: 24, Indels: 40
0.68 0.12 0.20
Matches are distributed among these distances:
22 11 0.08
23 10 0.07
24 29 0.21
25 48 0.36
26 10 0.07
27 7 0.05
28 3 0.02
29 1 0.01
30 16 0.12
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.67
Consensus pattern (25 bp):
TTTATTTTATTATTATTTTTATATA
Found at i:15910590 original size:3 final size:3
Alignment explanation
Indices: 15910286--15910573 Score: 152
Period size: 3 Copynumber: 96.0 Consensus size: 3
15910276 CATTTCTTAA
* ** *
15910286 ATT ATT A-T ACT ATT -TT ATT ATT AAA ATT AATT AATT -TT ATT TTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT -ATT ATT ATT ATT
* *
15910330 ATT ATT AATT -TT ATT ATT ATT ACT ATTT ATT ATT ATT ACT ATT ATT
1 ATT ATT -ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT
* * * * *
15910376 ATT ACT ATT ACTT -TT ATA ATTT ATT ATT GTT ATT GTT ACT ATT -TCT
1 ATT ATT ATT A-TT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT AT-T
* * * * *
15910422 ATT ATT GTT -TT ATT ATT ATT ATT -TAT ATT ATT GTT GTT GTT ATC
1 ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT
* *
15910466 ATT ATT CCTT ATT -TT ATT ATT ATT -TT TTT A-T ATTT ATT -TT ATT
1 ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT
* * * * * *
15910509 ATT ATT TTCT ATT ATT GTT AAT ATT AGT A-T ATT ATT ATT ATG CTT
1 ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
15910554 ATT AATGT ATT ATT ATT ATT
1 ATT -AT-T ATT ATT ATT ATT
15910574 TTCTACTTTA
Statistics
Matches: 220, Mismatches: 40, Indels: 50
0.71 0.13 0.16
Matches are distributed among these distances:
2 24 0.11
3 167 0.76
4 28 0.13
5 1 0.00
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:15911273 original size:23 final size:22
Alignment explanation
Indices: 15911231--15911273 Score: 52
Period size: 22 Copynumber: 1.9 Consensus size: 22
15911221 CCGAATATCC
*
15911231 TTTTAAAATCAAGATGCAAGAG
1 TTTTAAAATCAAGAAGCAAGAG
15911253 TTTTAAAGATCAA-AAGACAAG
1 TTTTAAA-ATCAAGAAG-CAAG
15911274 CTTATTCTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.49, C:0.09, G:0.16, T:0.26
Consensus pattern (22 bp):
TTTTAAAATCAAGAAGCAAGAG
Found at i:15912909 original size:27 final size:27
Alignment explanation
Indices: 15912879--15913025 Score: 82
Period size: 27 Copynumber: 5.5 Consensus size: 27
15912869 ATACTTTAGT
*
15912879 TTACTAAAATACCCTTAGTTTGTAAAA
1 TTACCAAAATACCCTTAGTTTGTAAAA
** * *
15912906 TTACTGAAATA-CCTTCGACTTGTAAAA
1 TTACCAAAATACCCTTAG-TTTGTAAAA
** *** *
15912933 TTACCAAAGCACCCCCGGTTTATAAAA
1 TTACCAAAATACCCTTAGTTTGTAAAA
* * * *
15912960 TTACCGAAATA-CCTTCGATTATAAAA
1 TTACCAAAATACCCTTAGTTTGTAAAA
** * * *
15912986 TTACTGAAATGCCCTCAATTTGTAAAA
1 TTACCAAAATACCCTTAGTTTGTAAAA
*
15913013 TTACCAAAGTACC
1 TTACCAAAATACC
15913026 TTCGATTTAC
Statistics
Matches: 87, Mismatches: 30, Indels: 6
0.71 0.24 0.05
Matches are distributed among these distances:
26 25 0.29
27 59 0.68
28 3 0.03
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (27 bp):
TTACCAAAATACCCTTAGTTTGTAAAA
Found at i:15913014 original size:53 final size:53
Alignment explanation
Indices: 15912879--15913032 Score: 166
Period size: 53 Copynumber: 2.9 Consensus size: 53
15912869 ATACTTTAGT
* * * *
15912879 TTACTAAAATACCCTTAGTTTGTAAAATTACTGAAATACCTTCGACTTGTAAAA
1 TTACTAAAATGCCCTCAGTTTGTAAAATTACCGAAATACCTTCGA-TTATAAAA
* *** * * *
15912933 TTACCAAAGCACCCCCGGTTTATAAAATTACCGAAATACCTTCGATTATAAAA
1 TTACTAAAATGCCCTCAGTTTGTAAAATTACCGAAATACCTTCGATTATAAAA
* *
15912986 TTACTGAAATGCCCTCAATTTGTAAAATTACC-AAAGTACCTTCGATT
1 TTACTAAAATGCCCTCAGTTTGTAAAATTACCGAAA-TACCTTCGATT
15913033 TACAGAATTA
Statistics
Matches: 81, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
52 3 0.04
53 41 0.51
54 37 0.46
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.32
Consensus pattern (53 bp):
TTACTAAAATGCCCTCAGTTTGTAAAATTACCGAAATACCTTCGATTATAAAA
Found at i:15913033 original size:27 final size:26
Alignment explanation
Indices: 15912897--15913295 Score: 117
Period size: 27 Copynumber: 14.8 Consensus size: 26
15912887 ATACCCTTAG
*
15912897 TTTGTAAAATTACTGAAATACCTTCGA
1 TTTGTAAAATTAC-CAAATACCTTCGA
* * ** *
15912924 CTTGTAAAATTACCAAAGCACCCCCGG
1 TTTGTAAAATTACCAAA-TACCTTCGA
*
15912951 TTTATAAAATTACCGAAATACCTTCGA
1 TTTGTAAAATTACC-AAATACCTTCGA
* * * * *
15912978 -TTATAAAATTACTGAAATGCCCTCAA
1 TTTGTAAAATTAC-CAAATACCTTCGA
15913004 TTTGTAAAATTACCAAAGTACCTTCGA
1 TTTGTAAAATTACCAAA-TACCTTCGA
** * **** *
15913031 TTTACAGAATTATCGTTTTACCCTCGA
1 TTTGTAAAATTA-CCAAATACCTTCGA
* * ** *
15913058 TTTATAGAATTACCATTTTACCCTCGA
1 TTTGTAAAATTACCA-AATACCTTCGA
* * **
15913085 TTTATAGAATTACCATTTTACCTTCGA
1 TTTGTAAAATTACCA-AATACCTTCGA
* * **** *
15913112 TTTATAGAATTATCGTTTTACCCTCGA
1 TTTGTAAAATTA-CCAAATACCTTCGA
** ****
15913139 TTTACAAAATTATCGTTTTACCCTT-GA
1 TTTGTAAAATTA-CCAAATA-CCTTCGA
**
15913166 TTTAAAAAATTACCAAAATACCCTT-GA
1 TTTGTAAAATTACC-AAATA-CCTTCGA
* * *
15913193 TTTGTAAAATTACTAAAATACC-CCTGG
1 TTTGTAAAATTAC-CAAATACCTTC-GA
15913220 TTTGTAAAATTACCAAAATACC-TCTGA
1 TTTGTAAAATTACC-AAATACCTTC-GA
* * *
15913247 TTTGTGAAATTATCGAAATA-CTCTCAA
1 TTTGTAAAATTA-CCAAATACCT-TCGA
*
15913274 TTTGTAAAATTATCGAAATACC
1 TTTGTAAAATTA-CCAAATACC
15913296 CCTGTAGGGT
Statistics
Matches: 298, Mismatches: 56, Indels: 35
0.77 0.14 0.09
Matches are distributed among these distances:
26 32 0.11
27 254 0.85
28 12 0.04
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (26 bp):
TTTGTAAAATTACCAAATACCTTCGA
Found at i:15913070 original size:54 final size:54
Alignment explanation
Indices: 15912997--15913195 Score: 209
Period size: 54 Copynumber: 3.7 Consensus size: 54
15912987 TACTGAAATG
* * * *
15912997 CCCTCAATTTGTAAAATTACCAAAGTACCTTCGATTTACAGAATTATCGTTTTA
1 CCCTCGATTTATAAAATTACCAAATTACCCTCGATTTACAGAATTATCGTTTTA
* ** * * *
15913051 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCAAATTACCCTCGATTTACAGAATTATCGTTTTA
* * * *** *
15913105 CCTTCGATTTATAGAATTATCGTTTTACCCTCGATTTACAAAATTATCGTTTTA
1 CCCTCGATTTATAAAATTACCAAATTACCCTCGATTTACAGAATTATCGTTTTA
* * * *
15913159 CCCTTGATTTAAAAAATTACCAAAATACCCTTGATTT
1 CCCTCGATTTATAAAATTACCAAATTACCCTCGATTT
15913196 GTAAAATTAC
Statistics
Matches: 118, Mismatches: 27, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 118 1.00
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.40
Consensus pattern (54 bp):
CCCTCGATTTATAAAATTACCAAATTACCCTCGATTTACAGAATTATCGTTTTA
Found at i:15913195 original size:81 final size:81
Alignment explanation
Indices: 15913009--15913204 Score: 250
Period size: 81 Copynumber: 2.4 Consensus size: 81
15912999 CTCAATTTGT
* * * *
15913009 AAAATTACCAAAGTACCTTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAGAATTACCAT
1 AAAATTACCAAAATACCTTCGATTTATAGAATTATCGTTTTACCCTCGATTTACAAAATTACCAT
*
15913074 TTTACCCTCGATTTAT
66 TTTACCCTCGATTTAA
* *** * *
15913090 AGAATTACCATTTTACCTTCGATTTATAGAATTATCGTTTTACCCTCGATTTACAAAATTATCGT
1 AAAATTACCAAAATACCTTCGATTTATAGAATTATCGTTTTACCCTCGATTTACAAAATTACCAT
*
15913155 TTTACCCTTGATTTAA
66 TTTACCCTCGATTTAA
* *
15913171 AAAATTACCAAAATACCCTT-GATTTGTAAAATTA
1 AAAATTACCAAAATA-CCTTCGATTTATAGAATTA
15913205 CTAAAATACC
Statistics
Matches: 97, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
81 93 0.96
82 4 0.04
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.39
Consensus pattern (81 bp):
AAAATTACCAAAATACCTTCGATTTATAGAATTATCGTTTTACCCTCGATTTACAAAATTACCAT
TTTACCCTCGATTTAA
Found at i:15913202 original size:54 final size:54
Alignment explanation
Indices: 15912951--15913261 Score: 170
Period size: 54 Copynumber: 5.8 Consensus size: 54
15912941 GCACCCCCGG
* *** * **
15912951 TTTATAAAATTACCGAAATA-CCTTCGA-TTATAAAATTA-CTGAAATGCCCTCAA
1 TTTATAAAATTACCAAAATACCCTT-GATTTATAAAATTATC-GTTTTACCCTTGA
* * * * *
15913004 TTTGTAAAATTACCAAAGTA-CCTTCGATTTACAGAATTATCGTTTTACCCTCGA
1 TTTATAAAATTACCAAAATACCCTT-GATTTATAAAATTATCGTTTTACCCTTGA
* *** * * * *
15913058 TTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTA-CCTTCGA
1 TTTATAAAATTACCAAAATACCCTTGATTTATAAAATTATCGTTTTACCCTT-GA
* * **** * *
15913112 TTTATAGAATTATCGTTTTACCCTCGATTTACAAAATTATCGTTTTACCCTTGA
1 TTTATAAAATTACCAAAATACCCTTGATTTATAAAATTATCGTTTTACCCTTGA
* * ** * *
15913166 TTTAAAAAATTACCAAAATACCCTTGATTTGTAAAATTA-C-TAAAATACCCCTGG
1 TTTATAAAATTACCAAAATACCCTTGATTTATAAAATTATCGT--TTTACCCTTGA
* * *
15913220 TTTGTAAAATTACCAAAATA-CCTCTGATTTGTGAAATTATCG
1 TTTATAAAATTACCAAAATACCCT-TGATTTATAAAATTATCG
15913262 AAATACTCTC
Statistics
Matches: 205, Mismatches: 43, Indels: 17
0.77 0.16 0.06
Matches are distributed among these distances:
52 1 0.00
53 31 0.15
54 164 0.80
55 9 0.04
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.38
Consensus pattern (54 bp):
TTTATAAAATTACCAAAATACCCTTGATTTATAAAATTATCGTTTTACCCTTGA
Found at i:15913278 original size:54 final size:54
Alignment explanation
Indices: 15913171--15913296 Score: 141
Period size: 54 Copynumber: 2.3 Consensus size: 54
15913161 CTTGATTTAA
**
15913171 AAAATTACCAAAATACCCTTGATTTGTAAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCTTGATTTGTAAAATTACTAAAATACCCCTAATTTGT
* * *
15913225 AAAATTACCAAAATA-CCTCTGATTTGTGAAATTA-TCGAAATA-CTCTCAATTTGT
1 AAAATTACCAAAATACCCT-TGATTTGTAAAATTACT-AAAATACCCCT-AATTTGT
* *
15913279 AAAATTATCGAAATACCC
1 AAAATTACCAAAATACCC
15913297 CTGTAGGGTA
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
53 7 0.11
54 52 0.85
55 2 0.03
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (54 bp):
AAAATTACCAAAATACCCTTGATTTGTAAAATTACTAAAATACCCCTAATTTGT
Found at i:15913311 original size:27 final size:27
Alignment explanation
Indices: 15913281--15913476 Score: 248
Period size: 27 Copynumber: 7.3 Consensus size: 27
15913271 CAATTTGTAA
* *
15913281 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
**
15913308 AATTACCGAAATACCAATGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
15913335 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
**
15913362 AATTATTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
15913389 AATTACTGAAATACCTTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * **
15913416 AAATACTGAAATACCCCCGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
15913443 AATTACCGAGATACCCTTATGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
15913470 AATTACC
1 AATTACC
15913477 ATTTTGCCCC
Statistics
Matches: 148, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 148 1.00
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:15913312 original size:54 final size:54
Alignment explanation
Indices: 15913254--15913458 Score: 170
Period size: 54 Copynumber: 3.8 Consensus size: 54
15913244 TGATTTGTGA
* *
15913254 AATTATCGAAATACTCTCAAT-T-TGTAAAATTATCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATAC-C-CAATGTAGGTAAAATTACCGAAATACCCCTGTAGGGTAG
* * *
15913308 AATTACCGAAATA-CCAATGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCAATGTA-GGTAAAATTACCGAAATACCCCTGTAGGGTAG
* * * * **
15913362 AATTATTGAAATACCC-TTGTAGGGTAGAATTACTGAAATACCTTTGTAGGGTAG
1 AATTATCGAAATACCCAATGTA-GGTAAAATTACCGAAATACCCCTGTAGGGTAG
* ** * *
15913416 AAATA-CTGAAATACCC-CCGTAGGGTAGAATTACCGAGATACCC
1 AATTATC-GAAATACCCAATGTA-GGTAAAATTACCGAAATACCC
15913459 TTATGGGGTA
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
51 4 0.03
52 2 0.02
54 121 0.94
55 2 0.02
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (54 bp):
AATTATCGAAATACCCAATGTAGGTAAAATTACCGAAATACCCCTGTAGGGTAG
Found at i:15913750 original size:24 final size:25
Alignment explanation
Indices: 15913679--15913748 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
15913669 AGGAAGTGCT
* * *
15913679 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
15913704 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
15913729 AAAAGGGCTTTGCCCAAGTT
1 AAAAGGGCTTTGCCCCAGTT
15913749 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:15913761 original size:24 final size:25
Alignment explanation
Indices: 15913679--15913761 Score: 75
Period size: 25 Copynumber: 3.4 Consensus size: 25
15913669 AGGAAGTGCT
* * *
15913679 AAAAG-GGCTATGCCCCAGTTTACC
1 AAAAGAGGCTTTGCCCAAGTTTATC
*
15913703 GAAAAG-GGCTTTGCCCCAGTTTATC
1 -AAAAGAGGCTTTGCCCAAGTTTATC
*
15913728 AAAA-AGGGCTTTGCCCAAG-TTATT
1 AAAAGA-GGCTTTGCCCAAGTTTATC
15913752 AAAAGAGGCT
1 AAAAGAGGCT
15913762 AGGCCTCGAG
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
24 16 0.31
25 35 0.69
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCAAGTTTATC
Found at i:15914004 original size:30 final size:30
Alignment explanation
Indices: 15913970--15914052 Score: 123
Period size: 31 Copynumber: 2.7 Consensus size: 30
15913960 CGCTTACAGT
15913970 AAAGGCTTCGGCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCAGTGATATGATTTATGA
*
15914000 AAAGGCTTCGACCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCC-AGTGATATGATTTATGA
*
15914031 AAAGGTTTCGGCCCAGT-ATATG
1 AAAGGCTTCGG-CCAGTGATATG
15914053 TCGAGACTGA
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
30 17 0.35
31 29 0.60
32 2 0.04
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.30
Consensus pattern (30 bp):
AAAGGCTTCGGCCAGTGATATGATTTATGA
Found at i:15915993 original size:17 final size:18
Alignment explanation
Indices: 15915961--15915994 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15915951 TACATAATTA
*
15915961 TTTTCAATAATAATAAAT
1 TTTTCAAAAATAATAAAT
15915979 TTTTCAAAAAT-ATAAA
1 TTTTCAAAAATAATAAA
15915995 AATTATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (18 bp):
TTTTCAAAAATAATAAAT
Found at i:15916861 original size:36 final size:36
Alignment explanation
Indices: 15916748--15916861 Score: 129
Period size: 37 Copynumber: 3.0 Consensus size: 36
15916738 TTAATACCAT
*
15916748 TATAATTATAATTATTTAATATTAATATAAAATTAA
1 TATAATTATATTTATTTAATATTAATATAAAATTAA
* * *
15916784 TATTAATTATTTTATTTTATTTAATGTTAATGTTAATATTAA
1 TA-TAATTA---TA-TTTATTTAATATTAAT-ATAAAATTAA
*
15916826 TATAATTATATTTATTTAATAATAATATAAAATTAA
1 TATAATTATATTTATTTAATATTAATATAAAATTAA
15916862 ATTTTATTAT
Statistics
Matches: 64, Mismatches: 8, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
36 10 0.16
37 20 0.31
38 2 0.03
40 2 0.03
41 20 0.31
42 10 0.16
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (36 bp):
TATAATTATATTTATTTAATATTAATATAAAATTAA
Found at i:15916889 original size:24 final size:23
Alignment explanation
Indices: 15916858--15916927 Score: 65
Period size: 24 Copynumber: 3.0 Consensus size: 23
15916848 TAATATAAAA
*
15916858 TTAA-ATTTTATTATTATAATTT
1 TTAATATTTTATTATTATTATTT
15916880 TTAA-ATATTTATT-TATATGTATTT
1 TTAATAT-TTTATTAT-TAT-TATTT
*
15916904 TTAATTTTTTATATATTATTATTT
1 TTAATATTTTAT-TATTATTATTT
15916928 CTTATCAACA
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
22 7 0.17
23 9 0.22
24 18 0.45
25 5 0.12
26 1 0.03
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (23 bp):
TTAATATTTTATTATTATTATTT
Found at i:15920555 original size:30 final size:30
Alignment explanation
Indices: 15920519--15920576 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
15920509 TAGAGAGAAT
*
15920519 TAAAATAAAATTATATATTTTTAAGAAAAC
1 TAAAATAAAAGTATATATTTTTAAGAAAAC
15920549 TAAAATAAAAGTATATATTTTTAAGAAA
1 TAAAATAAAAGTATATATTTTTAAGAAA
15920577 GTTAAGATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (30 bp):
TAAAATAAAAGTATATATTTTTAAGAAAAC
Found at i:15922817 original size:15 final size:16
Alignment explanation
Indices: 15922770--15922820 Score: 68
Period size: 17 Copynumber: 3.2 Consensus size: 16
15922760 TAAAAAGCAT
*
15922770 TTTTGAGATAAAAATA
1 TTTTGAAATAAAAATA
15922786 CTTTTGAAATAAAAATA
1 -TTTTGAAATAAAAATA
*
15922803 TTTTTAAAT-AAAATA
1 TTTTGAAATAAAAATA
15922818 TTT
1 TTT
15922821 AAAAAAATGT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.28
16 8 0.25
17 15 0.47
ACGTcount: A:0.49, C:0.02, G:0.06, T:0.43
Consensus pattern (16 bp):
TTTTGAAATAAAAATA
Found at i:15925437 original size:28 final size:28
Alignment explanation
Indices: 15925390--15925443 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
15925380 TCTAATAAAA
* * *
15925390 TAAATTTAATAATATTAAAAATTAAACC
1 TAAATTTAAAAATATGAAAAAATAAACC
*
15925418 TAAATTTAAAAATCTGAAAAAATAAA
1 TAAATTTAAAAATATGAAAAAATAAA
15925444 GTGACTAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.61, C:0.06, G:0.02, T:0.31
Consensus pattern (28 bp):
TAAATTTAAAAATATGAAAAAATAAACC
Found at i:15929801 original size:14 final size:14
Alignment explanation
Indices: 15929782--15929810 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
15929772 TGGTGAGTCT
15929782 CTTGAGGCTCTTGG
1 CTTGAGGCTCTTGG
15929796 CTTGAGGCTCTTGG
1 CTTGAGGCTCTTGG
15929810 C
1 C
15929811 AATAGTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.24, G:0.34, T:0.34
Consensus pattern (14 bp):
CTTGAGGCTCTTGG
Found at i:15933380 original size:19 final size:19
Alignment explanation
Indices: 15933356--15933394 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
15933346 TAGAGTAATT
15933356 AAACATTGACAATAAGAAC
1 AAACATTGACAATAAGAAC
15933375 AAACATTGACAATAAGAAC
1 AAACATTGACAATAAGAAC
15933394 A
1 A
15933395 TGTCGAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.59, C:0.15, G:0.10, T:0.15
Consensus pattern (19 bp):
AAACATTGACAATAAGAAC
Found at i:15936255 original size:44 final size:44
Alignment explanation
Indices: 15936192--15936280 Score: 151
Period size: 44 Copynumber: 2.0 Consensus size: 44
15936182 AAAATGTTAT
15936192 ATCCATTAAAAAAATAGTCAATCATAGACCGCCACATCATATAA
1 ATCCATTAAAAAAATAGTCAATCATAGACCGCCACATCATATAA
** *
15936236 ATCCATTAAAAAAATAGTCAATCATAGAGTGCCACATCATGTAA
1 ATCCATTAAAAAAATAGTCAATCATAGACCGCCACATCATATAA
15936280 A
1 A
15936281 CATTTAAAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.47, C:0.20, G:0.09, T:0.24
Consensus pattern (44 bp):
ATCCATTAAAAAAATAGTCAATCATAGACCGCCACATCATATAA
Found at i:15948257 original size:21 final size:21
Alignment explanation
Indices: 15948232--15948280 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
15948222 TACAAGGATC
15948232 ACATGCCCGTGTGG-CCAAGGG
1 ACATGCCCGTGTGGTCCAA-GG
*
15948253 ACATGCCCGTGTGGTCCAATG
1 ACATGCCCGTGTGGTCCAAGG
15948274 ACATGCC
1 ACATGCC
15948281 TGTGCTTCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (21 bp):
ACATGCCCGTGTGGTCCAAGG
Found at i:15949596 original size:42 final size:41
Alignment explanation
Indices: 15949550--15949655 Score: 142
Period size: 42 Copynumber: 2.5 Consensus size: 41
15949540 TAAGGGTTAC
*
15949550 TGAGACTATGTGTAAGACCATATCTAG-GATATGACATCTATA
1 TGAGACT-TGTGTAAGACCATATCT-GTGATATGACATCGATA
*
15949592 TGAGACTTTGTGTAAGACCATATCTGTGATATGGCATCGATA
1 TGAGAC-TTGTGTAAGACCATATCTGTGATATGACATCGATA
*
15949634 TGAGACTTCATGTAAGACCATA
1 TGAGACTT-GTGTAAGACCATA
15949656 GCTGGGGTAT
Statistics
Matches: 58, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
41 3 0.05
42 54 0.93
43 1 0.02
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (41 bp):
TGAGACTTGTGTAAGACCATATCTGTGATATGACATCGATA
Found at i:15949689 original size:43 final size:42
Alignment explanation
Indices: 15949560--15949713 Score: 130
Period size: 42 Copynumber: 3.6 Consensus size: 42
15949550 TGAGACTATG
* * * * * ***
15949560 TGTAAGACCATATCTAGGATATGACATCTATATGAGACTTTG
1 TGTAAGACCATAGCTGGGATATGGCATCGATACGAGACTCCA
* * * *
15949602 TGTAAGACCATATCTGTGATATGGCATCGATATGAGACTTCA
1 TGTAAGACCATAGCTGGGATATGGCATCGATACGAGACTCCA
* *
15949644 TGTAAGACCATAGCTGGGGTATTGGCATTGATACGAGA-TCCCA
1 TGTAAGACCATAGCTGGGATA-TGGCATCGATACGAGACT-CCA
* * *
15949687 TGTAAGACCATATCTAGGATACGGCAT
1 TGTAAGACCATAGCTGGGATATGGCAT
15949714 TGGTATGGTA
Statistics
Matches: 94, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
42 60 0.64
43 34 0.36
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATAGCTGGGATATGGCATCGATACGAGACTCCA
Found at i:15951696 original size:3 final size:3
Alignment explanation
Indices: 15951688--15951765 Score: 70
Period size: 3 Copynumber: 26.0 Consensus size: 3
15951678 TTAGATTTTC
* * * *
15951688 TAT TAT TAT TAT TAT TAT TAT TAT TGT TGT TGT TGT TACT TA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT
* *
15951733 TAT TAT TTT TAT TAT TAT TGT TACT TA- TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT
15951766 CTTTTGCATC
Statistics
Matches: 65, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
2 4 0.06
3 55 0.85
4 6 0.09
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:15951734 original size:30 final size:30
Alignment explanation
Indices: 15951700--15951765 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
15951690 TTATTATTAT
* * *
15951700 TATTATTATTATTGTTGTTGTTGTTACTTA
1 TATTATTATTATTATTATTATTGTTACTTA
*
15951730 TATTATTATTTTTATTATTATTGTTACTTA
1 TATTATTATTATTATTATTATTGTTACTTA
15951760 TATTAT
1 TATTAT
15951766 CTTTTGCATC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.24, C:0.03, G:0.08, T:0.65
Consensus pattern (30 bp):
TATTATTATTATTATTATTATTGTTACTTA
Found at i:15958227 original size:24 final size:25
Alignment explanation
Indices: 15958177--15958227 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
15958167 ATTTATTTTT
*
15958177 TTATTTTAAGATGTTTTATTATGTG
1 TTATTTTAAGATATTTTATTATGTG
15958202 TTATTTTAA-ATATTTTA-TATGATG
1 TTATTTTAAGATATTTTATTATG-TG
15958226 TT
1 TT
15958228 TACGTTGGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 4 0.17
24 11 0.46
25 9 0.38
ACGTcount: A:0.27, C:0.00, G:0.12, T:0.61
Consensus pattern (25 bp):
TTATTTTAAGATATTTTATTATGTG
Found at i:15971902 original size:44 final size:44
Alignment explanation
Indices: 15971814--15971965 Score: 223
Period size: 44 Copynumber: 3.4 Consensus size: 44
15971804 AAAACAGAAA
* *
15971814 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGAT
1 TGAGCCATGTAAGTCCATATT--ATATATGGCATTGGAGACAGGAT
*
15971860 TGAGCCATATAAGTCCATATTATATATGGCATTGGAGACAGGAT
1 TGAGCCATGTAAGTCCATATTATATATGGCATTGGAGACAGGAT
*
15971904 TGAGCCATGTAAGTCCATATTATATATGGCATTGGAGACAGGAA
1 TGAGCCATGTAAGTCCATATTATATATGGCATTGGAGACAGGAT
* **
15971948 TAATTCATGTAAGTCCAT
1 TGAGCCATGTAAGTCCAT
15971966 GTCAAAGACA
Statistics
Matches: 98, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
44 78 0.80
46 20 0.20
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.30
Consensus pattern (44 bp):
TGAGCCATGTAAGTCCATATTATATATGGCATTGGAGACAGGAT
Found at i:15971980 original size:90 final size:89
Alignment explanation
Indices: 15971814--15971984 Score: 209
Period size: 88 Copynumber: 1.9 Consensus size: 89
15971804 AAAACAGAAA
* * *
15971814 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGATTGAGCCATATAAGTCCATA
1 TGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGGAATAAGCCATATAAGTCCATA
* * *
15971879 TTATATATGGCATTGGAGACAGGAT
65 TAAGACATGGCATTGGAGACAGGAT
* ** * *
15971904 TGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGGAATAATTCATGTAAGTCCATGT
1 TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAATAAGCCATATAAGTCCATAT
15971968 CAAAGACATGGCATTGG
66 --AAGACATGGCATTGG
15971985 CAGGATATTG
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
88 35 0.51
90 33 0.49
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (89 bp):
TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAATAAGCCATATAAGTCCATAT
AAGACATGGCATTGGAGACAGGAT
Found at i:15974377 original size:44 final size:44
Alignment explanation
Indices: 15974309--15974619 Score: 288
Period size: 44 Copynumber: 7.0 Consensus size: 44
15974299 CCAAGGTGAA
* **
15974309 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCCACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAG
15974353 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAG
* * * * *
15974397 TCTTATCTCCCTGAAATTACAGTGGAGTAGACT-ATAGATTACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGA-AG-TTACAAG
* ** * * *
15974442 TCTTATCTCCTTGAAGTTGCAGTGGAATATATAGAAGTTACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAG
* * * * *
15974486 ACTAATATCCCTGAAGTTGCAGTGGAGTAGATAGAAGTTACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAG
* * * * *
15974530 T-TGTATTTTCATGAAGTTGCAGTGGAGCA-AGTTGAAATTAGCGTA-
1 TCT-TATCTCCCTGAAGTTGCAGTGGAGCAGA-TTGAAGTTA-C-AAG
* * * *
15974575 TCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAG
15974619 T
1 T
15974620 TACAAGTACT
Statistics
Matches: 219, Mismatches: 38, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
43 4 0.02
44 146 0.67
45 65 0.30
46 4 0.02
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.31
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAG
Found at i:15974464 original size:89 final size:88
Alignment explanation
Indices: 15974329--15974558 Score: 239
Period size: 89 Copynumber: 2.6 Consensus size: 88
15974319 CTGAAGTTGT
* * ** * *
15974329 AGTGGAGCAGATTGAAGCCACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAC
1 AGTGGAGTAGATAGAAGTTACAAGTCTTATCTCCATGAAGTTGCAGTGGAGCAGATAGAAGTTAC
** * *
15974394 AAGTCTTATCTCCCTGAAATTAC
66 AAAACTAATATCCCTGAAATTAC
* * * ** *
15974417 AGTGGAGTAGACTA-TAGATTACAAATCTTATCTCCTTGAAGTTGCAGTGGAATATATAGAAGTT
1 AGTGGAGTAGA-TAGAAG-TTACAAGTCTTATCTCCATGAAGTTGCAGTGGAGCAGATAGAAGTT
* *
15974481 ACAAAACTAATATCCCTGAAGTTGC
64 ACAAAACTAATATCCCTGAAATTAC
* *
15974506 AGTGGAGTAGATAGAAGTTACAAGT-TGTATTTTCATGAAGTTGCAGTGGAGCA
1 AGTGGAGTAGATAGAAGTTACAAGTCT-TATCTCCATGAAGTTGCAGTGGAGCA
15974559 AGTTGAAATT
Statistics
Matches: 114, Mismatches: 24, Indels: 8
0.78 0.16 0.05
Matches are distributed among these distances:
87 1 0.01
88 42 0.37
89 71 0.62
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (88 bp):
AGTGGAGTAGATAGAAGTTACAAGTCTTATCTCCATGAAGTTGCAGTGGAGCAGATAGAAGTTAC
AAAACTAATATCCCTGAAATTAC
Found at i:15974617 original size:133 final size:133
Alignment explanation
Indices: 15974307--15974617 Score: 333
Period size: 133 Copynumber: 2.3 Consensus size: 133
15974297 CACCAAGGTG
* * * * ** * *
15974307 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCCACAAGTCTTATCTCCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAAACTAATATCCCTGAAGTTG
* * * *
15974372 CAGTGGAGCAGATTGAAGTTACAAGTCTTATCTCCCTGAAATTACAGTGGAGTAGACTATAGATT
66 CAGTGGAGCAGATAGAAGTTACAAGTCTTATCTCCATGAAATTACAGTGGAGCAGACTATAAATT
15974437 ACA
131 ACA
* * * *
15974440 AATCTTATCTCCTTGAAGTTGCAGTGGAATATA-TAGAAGTTACAAAACTAATATCCCTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTA-AAGCTACAAAACTAATATCCCTGAAGTT
* * * * * *
15974504 GCAGTGGAGTAGATAGAAGTTACAAGT-TGTATTTTCATGAAGTTGCAGTGGAGCA-AGT-TGAA
65 GCAGTGGAGCAGATAGAAGTTACAAGTCT-TATCTCCATGAAATTACAGTGGAGCAGACTAT-AA
*
15974566 ATTAGCG
128 ATTA-CA
* *
15974573 TATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAA
15974618 GTTACAAGTA
Statistics
Matches: 144, Mismatches: 29, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
131 1 0.01
132 9 0.06
133 132 0.92
134 2 0.01
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (133 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAAACTAATATCCCTGAAGTTG
CAGTGGAGCAGATAGAAGTTACAAGTCTTATCTCCATGAAATTACAGTGGAGCAGACTATAAATT
ACA
Found at i:15976381 original size:6 final size:6
Alignment explanation
Indices: 15976360--15976403 Score: 52
Period size: 6 Copynumber: 7.0 Consensus size: 6
15976350 GAAGCAGGGG
* *
15976360 AGAAAA AGAGAAA AGAAAA AGAGAA AGAAAA ATAAAA GAGAAAA
1 AGAAAA AGA-AAA AGAAAA AGAAAA AGAAAA AGAAAA -AGAAAA
15976404 TTAGGGTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
6 21 0.66
7 11 0.34
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.02
Consensus pattern (6 bp):
AGAAAA
Found at i:15976386 original size:12 final size:13
Alignment explanation
Indices: 15976360--15976391 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
15976350 GAAGCAGGGG
15976360 AGAAAAAGAGAAA
1 AGAAAAAGAGAAA
15976373 AGAAAAAGAG-AA
1 AGAAAAAGAGAAA
15976385 AGAAAAA
1 AGAAAAA
15976392 TAAAAGAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 9 0.47
13 10 0.53
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (13 bp):
AGAAAAAGAGAAA
Found at i:15976401 original size:13 final size:12
Alignment explanation
Indices: 15976360--15976403 Score: 52
Period size: 13 Copynumber: 3.5 Consensus size: 12
15976350 GAAGCAGGGG
15976360 AGAAAAAGAGAAA
1 AGAAAAAGA-AAA
*
15976373 AGAAAAAGAGAA
1 AGAAAAAGAAAA
*
15976385 AGAAAAATAAAA
1 AGAAAAAGAAAA
15976397 GAGAAAA
1 -AGAAAA
15976404 TTAGGGTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
12 12 0.44
13 15 0.56
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.02
Consensus pattern (12 bp):
AGAAAAAGAAAA
Found at i:15977448 original size:45 final size:45
Alignment explanation
Indices: 15977359--15977501 Score: 157
Period size: 45 Copynumber: 3.2 Consensus size: 45
15977349 TTTTGCCGAC
* * * *
15977359 TTACTGA-TCAGGCAC-TTATGTGCCGACTACTATTACTGTTACTG
1 TTACTGATTCA-GCACTTTGTGTGTCGAATACTGTTACTGTTACTG
15977403 TTACTGATTC-GACACTTTGTGTGTCGAATACTGTTACTGTTACTG
1 TTACTGATTCAG-CACTTTGTGTGTCGAATACTGTTACTGTTACTG
* * * * * *
15977448 TTACAGATTCAGTACTTTGTTTGTTGAATACTGTTATTGTTACTA
1 TTACTGATTCAGCACTTTGTGTGTCGAATACTGTTACTGTTACTG
15977493 TTACTGATT
1 TTACTGATT
15977502 ACTGTTTAGG
Statistics
Matches: 84, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
43 1 0.01
44 10 0.12
45 72 0.86
46 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.43
Consensus pattern (45 bp):
TTACTGATTCAGCACTTTGTGTGTCGAATACTGTTACTGTTACTG
Found at i:15978970 original size:24 final size:24
Alignment explanation
Indices: 15978933--15979005 Score: 110
Period size: 24 Copynumber: 3.0 Consensus size: 24
15978923 GGTAAGACAT
*
15978933 TTTCCACAGCTCCTCTCTTCATCC
1 TTTCCACAGCTCCTCTCTTCACCC
* *
15978957 TTTCCACTGTTCCTCTCTTCACCC
1 TTTCCACAGCTCCTCTCTTCACCC
*
15978981 TTTCCACAGCTCCTCTATTCACCC
1 TTTCCACAGCTCCTCTCTTCACCC
15979005 T
1 T
15979006 ATCGATTGCA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.12, C:0.45, G:0.04, T:0.38
Consensus pattern (24 bp):
TTTCCACAGCTCCTCTCTTCACCC
Found at i:15979807 original size:8 final size:8
Alignment explanation
Indices: 15979794--15979818 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
15979784 AATGCCGTTC
15979794 CTGTTGTT
1 CTGTTGTT
15979802 CTGTTGTT
1 CTGTTGTT
15979810 CTGTTGTT
1 CTGTTGTT
15979818 C
1 C
15979819 CTGGTAATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.16, G:0.24, T:0.60
Consensus pattern (8 bp):
CTGTTGTT
Found at i:15984157 original size:34 final size:35
Alignment explanation
Indices: 15984099--15984165 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
15984089 CAAACACCAG
* * *
15984099 AAAATATTTTCCTGTAAGTCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
15984134 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
15984166 TATTTTACTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:15990900 original size:19 final size:19
Alignment explanation
Indices: 15990878--15990914 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
15990868 ATCACTATCA
15990878 CCCAACGTAATCAAATTTG
1 CCCAACGTAATCAAATTTG
*
15990897 CCCACCGTAATCAAATTT
1 CCCAACGTAATCAAATTT
15990915 ATTATTAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.35, C:0.30, G:0.08, T:0.27
Consensus pattern (19 bp):
CCCAACGTAATCAAATTTG
Found at i:15996060 original size:22 final size:22
Alignment explanation
Indices: 15996003--15996064 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
15995993 CTCCGATTAT
*
15996003 TAGCACATTAGTGCTCTCCGTT
1 TAGCACATTAGTGCTCTCCGTA
* * **
15996025 TAACACATTCGTGCTCTTTGTA
1 TAGCACATTAGTGCTCTCCGTA
*
15996047 TAGCACTTTAGTGCTCTC
1 TAGCACATTAGTGCTCTC
15996065 TGTTCAATAG
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.19, C:0.26, G:0.16, T:0.39
Consensus pattern (22 bp):
TAGCACATTAGTGCTCTCCGTA
Found at i:16002248 original size:34 final size:35
Alignment explanation
Indices: 16002204--16002270 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
16002194 CAGTAAAATA
*
16002204 TTTTCCGTAAAATGATTT-CGGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
* *
16002238 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTT
16002271 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.31, C:0.09, G:0.15, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
Found at i:16006176 original size:7 final size:7
Alignment explanation
Indices: 16006164--16006201 Score: 76
Period size: 7 Copynumber: 5.4 Consensus size: 7
16006154 GAGACACTGT
16006164 TCATCAC
1 TCATCAC
16006171 TCATCAC
1 TCATCAC
16006178 TCATCAC
1 TCATCAC
16006185 TCATCAC
1 TCATCAC
16006192 TCATCAC
1 TCATCAC
16006199 TCA
1 TCA
16006202 AACAGTAGGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.29, C:0.42, G:0.00, T:0.29
Consensus pattern (7 bp):
TCATCAC
Found at i:16007884 original size:16 final size:15
Alignment explanation
Indices: 16007858--16007892 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
16007848 TGATGTGAAT
16007858 AATATAAAATATTAA
1 AATATAAAATATTAA
*
16007873 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
16007889 AATA
1 AATA
16007893 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:16008064 original size:20 final size:20
Alignment explanation
Indices: 16008007--16008113 Score: 63
Period size: 22 Copynumber: 5.0 Consensus size: 20
16007997 AATACTACAT
16008007 AAATATGTACAT-ATATAAA
1 AAATATGTACATAATATAAA
** *
16008026 AAATAAATACGTGATAATATTAA
1 AAATATGTAC---ATAATATAAA
16008049 AAATATGTACATAATATAGTGTAA
1 AAATATGTACATAATATA----AA
**
16008073 AAATACATACATAATATAATTA
1 AAATATGTACATAATATAA--A
* *
16008095 AAATATATACATAAGATAA
1 AAATATGTACATAATATAA
16008114 CATGTAAAAA
Statistics
Matches: 68, Mismatches: 10, Indels: 17
0.72 0.11 0.18
Matches are distributed among these distances:
19 8 0.12
20 8 0.12
22 20 0.29
23 14 0.21
24 18 0.26
ACGTcount: A:0.57, C:0.06, G:0.07, T:0.31
Consensus pattern (20 bp):
AAATATGTACATAATATAAA
Found at i:16008073 original size:24 final size:23
Alignment explanation
Indices: 16008044--16008234 Score: 115
Period size: 24 Copynumber: 8.1 Consensus size: 23
16008034 ACGTGATAAT
*
16008044 ATTAAAAATATGTACATAATATA
1 ATTAAAAATATATACATAATATA
* *
16008067 GTGTAAAAATACATACATAATATA
1 AT-TAAAAATATATACATAATATA
*
16008091 ATT-AAAATATATACATAAGATAA
1 ATTAAAAATATATACATAATAT-A
* *
16008114 CATGTAAAAA-AAATATATAATATA
1 -AT-TAAAAATATATACATAATATA
* *
16008138 GTATTAAAGATATATACATAAAATA
1 --ATTAAAAATATATACATAATATA
* *
16008163 A-TATAATATATATACGTAATATAGA
1 ATTA-AAAATATATACATAATAT--A
* * *
16008188 ATT-TAGA-ATATACCTAATAT-
1 ATTAAAAATATATACATAATATA
*
16008208 ATTAAAAGAATATATATATAATATA
1 ATT-AAA-AATATATACATAATATA
16008233 AT
1 AT
16008235 ATTAAGAAAT
Statistics
Matches: 128, Mismatches: 24, Indels: 30
0.70 0.13 0.16
Matches are distributed among these distances:
20 3 0.02
22 19 0.15
23 32 0.25
24 41 0.32
25 28 0.22
26 5 0.04
ACGTcount: A:0.56, C:0.05, G:0.06, T:0.34
Consensus pattern (23 bp):
ATTAAAAATATATACATAATATA
Found at i:16008108 original size:46 final size:48
Alignment explanation
Indices: 16008068--16008163 Score: 131
Period size: 50 Copynumber: 2.0 Consensus size: 48
16008058 CATAATATAG
*
16008068 TGTAAAAATACATACATAATATA-ATTAAAATATATACATAAGATAACA
1 TGTAAAAA-AAATACATAATATAGATTAAAATATATACATAAGATAACA
* *
16008116 TGTAAAAAAAATATATAATATAGTATTAAAGATATATACATAAAATAA
1 TGTAAAAAAAATACATAATATAG-ATTAAA-ATATATACATAAGATAA
16008164 TATAATATAT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
47 12 0.29
48 8 0.19
49 6 0.14
50 16 0.38
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.30
Consensus pattern (48 bp):
TGTAAAAAAAATACATAATATAGATTAAAATATATACATAAGATAACA
Found at i:16008154 original size:50 final size:48
Alignment explanation
Indices: 16008024--16008163 Score: 144
Period size: 47 Copynumber: 2.9 Consensus size: 48
16008014 TACATATATA
* * * * *
16008024 AAAAATAAATACGTGATA-ATATTAAAAATATGTACATAATAT-AGTGT
1 AAAAATAAATACATAATATATATT-AAAATATATACATAAAATAAATGT
* *
16008071 AAAAATACATACATAATATA-ATTAAAATATATACATAAGATAACATGT
1 AAAAATAAATACATAATATATATTAAAATATATACATAAAATAA-ATGT
*
16008119 AAAAA-AAATATATAATATAGTATTAAAGATATATACATAAAATAA
1 AAAAATAAATACATAATATA-TATTAAA-ATATATACATAAAATAA
16008164 TATAATATAT
Statistics
Matches: 78, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
46 16 0.21
47 31 0.40
48 9 0.12
49 6 0.08
50 16 0.21
ACGTcount: A:0.59, C:0.05, G:0.06, T:0.30
Consensus pattern (48 bp):
AAAAATAAATACATAATATATATTAAAATATATACATAAAATAAATGT
Found at i:16008821 original size:30 final size:30
Alignment explanation
Indices: 16008731--16008829 Score: 171
Period size: 30 Copynumber: 3.3 Consensus size: 30
16008721 TAGGTACAAG
16008731 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* * *
16008761 AGGTAGTAGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
16008791 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
16008821 TGGTGGTGG
1 TGGTGGTGG
16008830 CAAAGGCTAG
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 63 1.00
ACGTcount: A:0.18, C:0.06, G:0.49, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:16009660 original size:87 final size:86
Alignment explanation
Indices: 16009483--16009780 Score: 271
Period size: 87 Copynumber: 3.4 Consensus size: 86
16009473 GTGATCCTGA
* * * **
16009483 GCTCAACTCATTTCTCGCAATATGAATTGACTCTTTAAAACTAGACATT-AAAAACAGAAATTGA
1 GCTCAACTCACTTCTCGCAATATGAGTTGA-T-TTTAAAAC-AGAAATTGAAAAACAGATTTTGA
* * *
16009547 AAATAGCTCAGCACGTGAGCCAAG
63 AAATACCTCAGCACGTGACCCGAG
*
16009571 GCTCAACTCACTTCTCGCAATATGAGTTGATGTTTAAAACA-AAATTTGTAAAACAGATTTTGAA
1 GCTCAACTCACTTCTCGCAATATGAGTTGAT-TTTAAAACAGAAA-TTGAAAAACAGATTTTGAA
* * *
16009635 AATACCTCGGTATGTGACCCGAG
64 AATACCTCAGCACGTGACCCGAG
* ** * * * *
16009658 GCTCAACTCATTTCTCATAATATAAGTTGATTCTTGAAAAGCATAAATTGAAAAAAACATTAATT
1 GCTCAACTCACTTCTCGCAATATGAGTTGATT-TT-AAAA-CAGAAATTGAAAAACAGATT--TT
* * *
16009723 GAAAATACATCAG--CGTGCCCCGAA
61 GAAAATACCTCAGCACGTGACCCGAG
*
16009747 GCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTT
16009781 TTTGAAAAAC
Statistics
Matches: 172, Mismatches: 30, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
85 2 0.01
86 4 0.02
87 68 0.40
88 34 0.20
89 48 0.28
90 3 0.02
91 13 0.08
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.29
Consensus pattern (86 bp):
GCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAGAAATTGAAAAACAGATTTTGAAAA
TACCTCAGCACGTGACCCGAG
Found at i:16009835 original size:77 final size:76
Alignment explanation
Indices: 16009710--16010336 Score: 642
Period size: 77 Copynumber: 8.2 Consensus size: 76
16009700 ATAAATTGAA
** * * * *
16009710 AAAAACATTAATTGAAAATACATCAGC--GTGCCCCGAAGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
16009773 TTGATTTTTTTG
66 TTGA-TTTTTTG
*
16009785 AAAAACATAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
16009850 TTGATTTTTTG
66 TTGATTTTTTG
** * * *
16009861 ATGAACAGAAATT-AAAACTACCTCAACGTGT--CCTGAGGCTCAACTCACCTCTCGCAACATGA
1 AAAAACAGAAATTGAAAAC-ACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
16009923 GTTGATTTTTTTG
65 GTTGA-TTTTTTG
*
16009936 AAAAACAGAAGTTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
16010001 TTGATTTTTTTG
66 TTGA-TTTTTTG
* * * * *
16010013 ACAAACAGAAATTGAAAAATACCTCAGCGTGTAAGCCAAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGAAATTG-AAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
16010078 GTTGATTTTTTG
65 GTTGATTTTTTG
* **
16010090 AAAAATAGAAATTGAAAACACCTCAGCAAGT-----GAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
16010150 TTGA-TTTTTG
66 TTGATTTTTTG
* * * ** *
16010160 AAAAACATAAATTGAGCAGAAATTGAAAATACCTCAACG-G-GTCTTGAGGTTCAACTCACCTCT
1 ------A-AAA---A-CAGAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCT
16010223 CGCAATATGAGTTGATTTTTTG
55 CGCAATATGAGTTGATTTTTTG
** * * * ** *
16010245 ---ATGATAAATTGAAAATACCTCA--ATGTGACTTGAGGTTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
16010305 TTGATTTTTTG
66 TTGATTTTTTG
16010316 AATTAAAACAGAAATTGAAAA
1 -A--AAAACAGAAATTGAAAA
16010337 TAAAAATGGA
Statistics
Matches: 477, Mismatches: 42, Indels: 64
0.82 0.07 0.11
Matches are distributed among these distances:
70 7 0.01
71 94 0.20
74 34 0.07
75 58 0.12
76 48 0.10
77 126 0.26
78 51 0.11
80 2 0.00
81 19 0.04
84 32 0.07
85 6 0.01
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (76 bp):
AAAAACAGAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTG
Found at i:16009934 original size:151 final size:150
Alignment explanation
Indices: 16009719--16010338 Score: 706
Period size: 151 Copynumber: 4.1 Consensus size: 150
16009709 AAAAAACATT
* * * * *
16009719 AATTGAAAATACATCAGCGTGCCCCGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 AATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT
* *
16009784 GAAAAACATAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
65 GAAAAACAGAAATTGAAAACACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
16009849 GTTGATTTTTTGATGAACAGA
130 GTTGATTTTTTGATGAACAGA
*
16009870 AATT-AAAACTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTT
1 AATTGAAAA-TACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
* *
16009934 TGAAAAACAGAAGTTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
64 TGAAAAACAGAAATTGAAAACACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
**
16009999 AGTTGATTTTTTTGACAAACAGA
129 AGTTGA-TTTTTTGATGAACAGA
* *
16010022 AATTGAAAAATACCTCAGCGTGTAAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AATTG-AAAATACCTCAACGTGT---CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* *
16010086 TTTGAAAAATAGAAATTGAAAACACCTCAGCAAGT-----GAGGCTCAACTCACCTCTCGCAATA
62 TTTGAAAAACAGAAATTGAAAACACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATA
* *
16010146 TGAGTTGATTTTTGAAAAACATAAATTGAGCAGA
127 TGAGTTGATTTTT--------T-GA-TGAACAGA
* * *
16010180 AATTGAAAATACCTCAACGGGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
1 AATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
** * * ** *
16010245 ---ATGATAAATTGAAAATACCTCA--ATGTGACTTGAGGTTCAACTCACCTCTCGCAATATGAG
66 AAAAACAGAAATTGAAAACACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
*
16010305 TTGATTTTTTGAATTAAAACAGA
131 TTGATTTTTTG-A-T-GAACAGA
16010328 AATTGAAAATA
1 AATTGAAAATA
16010339 AAAATGGAAA
Statistics
Matches: 409, Mismatches: 35, Indels: 53
0.82 0.07 0.11
Matches are distributed among these distances:
147 4 0.01
148 21 0.05
149 33 0.08
150 7 0.02
151 122 0.30
152 36 0.09
153 12 0.03
154 39 0.10
155 106 0.26
156 3 0.01
157 16 0.04
158 10 0.02
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (150 bp):
AATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
AAAAACAGAAATTGAAAACACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTGATGAACAGA
Found at i:16010214 original size:155 final size:154
Alignment explanation
Indices: 16009719--16010407 Score: 584
Period size: 151 Copynumber: 4.4 Consensus size: 154
16009709 AAAAAACATT
* * * ** *
16009719 AATTGAAAATACATCAGCGTGCCCCGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
* * **
16009784 GAAAAACATAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
66 GAAAAATAGAAATTGAAAACACCTCAGCAAGT-----GAGGCTCAACTCACCTCTCGCAATATGA
16009849 GTTGATTTTTTG---------A-TGAACAGA
126 GTTGA-TTTTTGAAAAACAAAATTG-ACAGA
* *
16009870 AATT-AAAACTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTT
1 AATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * **
16009934 TGAAAAACAGAAGTTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
65 TGAAAAATAGAAATTGAAAACACCTCAGCAAGT-----GAGGCTCAACTCACCTCTCGCAATATG
***
16009999 AGTTGATTTTT--TTGAC--AA---ACAGA
125 AGTTGATTTTTGAAAAACAAAATTGACAGA
* **
16010022 AATTGAAAAATACCTCAGCGTGTAAGC-CAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
1 AATTG-AAAATACCTCAACGTGT---CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
16010085 TTTTGAAAAATAGAAATTGAAAACACCTCAGCAAGTGAGGCTCAACTCACCTCTCGCAATATGAG
62 TTTTGAAAAATAGAAATTGAAAACACCTCAGCAAGTGAGGCTCAACTCACCTCTCGCAATATGAG
16010150 TTGATTTTTGAAAAACATAAATTGAGCAGA
127 TTGATTTTTGAAAAACA-AAATTGA-CAGA
* *
16010180 AATTGAAAATACCTCAACGGGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT
1 AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
** * * ** *
16010244 G-ATGAT--AAATTGAAAATACCTCAATGTGACTTGAGGTTCAACTCACCTCTCGCAATATGAGT
66 GAAAAATAGAAATTGAAAACACCTC-A-G-CAAGTGAGGCTCAACTCACCTCTCGCAATATGAGT
* *
16010306 TGATTTTTTGAATTAAAACAGAAATTGAAAATAAA
128 TGA-TTTTTG-A--AAAACA-AAATTG---ACAGA
* * * * *
16010341 AATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTT
1 AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
16010404 GAAA
66 GAAA
16010408 CACATAAATT
Statistics
Matches: 465, Mismatches: 39, Indels: 58
0.83 0.07 0.10
Matches are distributed among these distances:
149 38 0.08
150 9 0.02
151 124 0.27
152 24 0.05
153 13 0.03
154 45 0.10
155 104 0.22
156 7 0.02
157 17 0.04
158 9 0.02
159 50 0.11
160 8 0.02
161 16 0.03
162 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (154 bp):
AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
GAAAAATAGAAATTGAAAACACCTCAGCAAGTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTGAAAAACAAAATTGACAGA
Found at i:16010553 original size:75 final size:74
Alignment explanation
Indices: 16010427--16010745 Score: 360
Period size: 77 Copynumber: 4.3 Consensus size: 74
16010417 TAAAAAAAAA
* * ** *
16010427 TTAAAAACAGAATTTGAAAGGACCTC-GACGTGTGGCCCGAGACTCAACTCACCTCTCGCAATAT
1 TTAAAAACAAAAATTGAAAATACCTCAG-CGTGT--CCCGAGGCTCAACTCACCTCTCGCAATAT
*
16010491 GAGTTGATTCTT
63 GAGTTGATTTTT
16010503 TTAAAAAGCAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTAAAAA-CAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
16010568 GTTGATTTTT
65 GTTGATTTTT
* * *
16010578 TTGATAAAA-ATAGAATTTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
1 TT-A-AAAACA-A-AAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATA
16010642 TGAGTTGA-TTTT
62 TGAGTTGATTTTT
* * * ** *
16010654 TGACAAACAAAAATTGAAATTACCTCAGC--GTCTTGAGGCTCAACTCACTTCTCGCAATATGAG
1 TTAAAAACAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
16010717 TTGATTTTT
66 TTGATTTTT
** * *
16010726 TTTGAAACATAAATTAAAAA
1 TTAAAAACAAAAATTGAAAA
16010746 AACGAAAATT
Statistics
Matches: 213, Mismatches: 22, Indels: 20
0.84 0.09 0.08
Matches are distributed among these distances:
71 36 0.17
72 18 0.08
73 16 0.08
74 4 0.02
75 44 0.21
76 14 0.07
77 80 0.38
78 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (74 bp):
TTAAAAACAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTT
Done.