Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 63 of 290
Found at i:19229218 original size:17 final size:17
Alignment explanation
Indices: 19229201--19229233 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
19229191 ATAACATTAT
19229201 TTTAA-TAAATTTAATA
1 TTTAATTAAATTTAATA
*
19229217 TTTAATTTAATTTAATA
1 TTTAATTAAATTTAATA
19229234 CTTATCATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TTTAATTAAATTTAATA
Found at i:19230923 original size:11 final size:10
Alignment explanation
Indices: 19230901--19230934 Score: 50
Period size: 11 Copynumber: 3.2 Consensus size: 10
19230891 ATGGGATATT
19230901 TTATTATTTA
1 TTATTATTTA
19230911 TTATTATTTTA
1 TTATTA-TTTA
19230922 TTATTAATTTA
1 TTATT-ATTTA
19230933 TT
1 TT
19230935 TAATATATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 6 0.27
11 15 0.68
12 1 0.05
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (10 bp):
TTATTATTTA
Found at i:19232636 original size:40 final size:40
Alignment explanation
Indices: 19232553--19232690 Score: 159
Period size: 40 Copynumber: 3.5 Consensus size: 40
19232543 CTCGAGAATA
* ** *
19232553 TAAAGTGGATAGGATTCGTTCCTGATTCACTATAATACCT
1 TAAAGTGGATAGGATTTGTTCCTGATTCACTATGGTAACT
* * *
19232593 TAAAGTGGATAGAATTTGTTCTTGATTCACTATGGTAATT
1 TAAAGTGGATAGGATTTGTTCCTGATTCACTATGGTAACT
* * * *
19232633 TAAAGTGAATAGGATTTATTCCTAATTCACTAAGGTAACT
1 TAAAGTGGATAGGATTTGTTCCTGATTCACTATGGTAACT
* *
19232673 TAAAGCGGATAAGATTTG
1 TAAAGTGGATAGGATTTG
19232691 ACCTGAAAAG
Statistics
Matches: 80, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 80 1.00
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36
Consensus pattern (40 bp):
TAAAGTGGATAGGATTTGTTCCTGATTCACTATGGTAACT
Found at i:19232762 original size:79 final size:78
Alignment explanation
Indices: 19232679--19232884 Score: 308
Period size: 79 Copynumber: 2.7 Consensus size: 78
19232669 AACTTAAAGC
* *
19232679 GGATAAGATTTGACCTGAAAAGGGTAATCCTGATTCACTACGGTTACATGATATATGATTCATTA
1 GGATAGGATTTGACCTGAAAAGGGTAATCCTGATTCACTACGGTTACATGATACATGATTCATTA
*
19232744 TGGTAACCTAAGG
66 TGATAACCTAAGG
* * *
19232757 TGGATAGGATTTGACCTGAAAAGGGTAATCCTGATTCGCTACGGTTACACGATACATGATTCCTT
1 -GGATAGGATTTGACCTGAAAAGGGTAATCCTGATTCACTACGGTTACATGATACATGATTCATT
*
19232822 ATGATAACTTAAGG
65 ATGATAACCTAAGG
**
19232836 GG-TAGGATTTGACCTGAAAA-GGTAATCCTGATTCACTATAGTTACATGA
1 GGATAGGATTTGACCTGAAAAGGGTAATCCTGATTCACTACGGTTACATGA
19232885 GATGTGACTC
Statistics
Matches: 116, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
76 25 0.22
77 18 0.16
78 2 0.02
79 71 0.61
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (78 bp):
GGATAGGATTTGACCTGAAAAGGGTAATCCTGATTCACTACGGTTACATGATACATGATTCATTA
TGATAACCTAAGG
Found at i:19235656 original size:25 final size:25
Alignment explanation
Indices: 19235628--19235713 Score: 127
Period size: 25 Copynumber: 3.4 Consensus size: 25
19235618 AACAGCTCGT
19235628 ATAAGCTTCTCGTTATTCAGCTCAC
1 ATAAGCTTCTCGTTATTCAGCTCAC
* * *
19235653 ATAAGCTTCCCGTTATTTAGCTCGC
1 ATAAGCTTCTCGTTATTCAGCTCAC
*
19235678 ATGAGCTTCTCGTTATTCAGCTCAC
1 ATAAGCTTCTCGTTATTCAGCTCAC
*
19235703 ATGAGCTTCTC
1 ATAAGCTTCTC
19235714 CTTTACAACT
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 54 1.00
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.36
Consensus pattern (25 bp):
ATAAGCTTCTCGTTATTCAGCTCAC
Found at i:19243376 original size:30 final size:29
Alignment explanation
Indices: 19243336--19243392 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
19243326 TTTGAATTGC
* *
19243336 AATTAGAGTTTCACGTGTATAATTACACAA
1 AATTAAAGTTT-ACGTATATAATTACACAA
*
19243366 AATTAAAGTTTATGTATATAATTACAC
1 AATTAAAGTTTACGTATATAATTACAC
19243393 GCTAAATGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 14 0.58
30 10 0.42
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.37
Consensus pattern (29 bp):
AATTAAAGTTTACGTATATAATTACACAA
Found at i:19248359 original size:49 final size:49
Alignment explanation
Indices: 19248251--19248360 Score: 152
Period size: 49 Copynumber: 2.2 Consensus size: 49
19248241 AATTCGAATG
* *
19248251 TTCTACCATC-CTAAATGGCCCGTCAATGATGGCTTTTACCAACTGCTTA
1 TTCTACCATCTC-GAATGGCCCGTCAAGGATGGCTTTTACCAACTGCTTA
*
19248300 TTCTACCATCTCGAATGGCCCAG-CAAGGATGGCTTTTACCAACTGCTTT
1 TTCTACCATCTCGAATGGCCC-GTCAAGGATGGCTTTTACCAACTGCTTA
*
19248349 TTCTATCATCTC
1 TTCTACCATCTC
19248361 AGATAATCTG
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
49 53 0.96
50 2 0.04
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.34
Consensus pattern (49 bp):
TTCTACCATCTCGAATGGCCCGTCAAGGATGGCTTTTACCAACTGCTTA
Found at i:19248646 original size:49 final size:49
Alignment explanation
Indices: 19248533--19248646 Score: 131
Period size: 49 Copynumber: 2.3 Consensus size: 49
19248523 GAATGGCGCA
*
19248533 ACAATGATGGTTTCCACTATTTACATATTCTACCATCCCAGATGACCCG
1 ACAATGATGGTTTTCACTATTTACATATTCTACCATCCCAGATGACCCG
* * * * * * *
19248582 ACAACGATGGCTTTCATTTTTTGCATATTTTACCATCTC-GAGTGACCCG
1 ACAATGATGGTTTTCACTATTTACATATTCTACCATCCCAGA-TGACCCG
*
19248631 ACAATGATGATTTTCA
1 ACAATGATGGTTTTCA
19248647 ATCACTATAT
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
48 2 0.04
49 51 0.96
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (49 bp):
ACAATGATGGTTTTCACTATTTACATATTCTACCATCCCAGATGACCCG
Found at i:19249374 original size:20 final size:22
Alignment explanation
Indices: 19249337--19249378 Score: 70
Period size: 20 Copynumber: 2.0 Consensus size: 22
19249327 ATCGTGATCT
19249337 AAACTTAATATCTATCAATTTC
1 AAACTTAATATCTATCAATTTC
19249359 AAACTTAAT-T-TATCAATTTC
1 AAACTTAATATCTATCAATTTC
19249379 TCTTTAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 10 0.50
21 1 0.05
22 9 0.45
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.43
Consensus pattern (22 bp):
AAACTTAATATCTATCAATTTC
Found at i:19250030 original size:3 final size:3
Alignment explanation
Indices: 19250022--19250068 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
19250012 AGTCGTTACA
19250022 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
19250069 AGACTCATCC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:19251042 original size:15 final size:15
Alignment explanation
Indices: 19251022--19251065 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
19251012 ACTTAAATTT
19251022 AATACTTAATTTTTC
1 AATACTTAATTTTTC
*
19251037 AATACTTAATTTTTT
1 AATACTTAATTTTTC
*
19251052 AATA-TTTATTTTTC
1 AATACTTAATTTTTC
19251066 CAACATTTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
14 8 0.31
15 18 0.69
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
AATACTTAATTTTTC
Found at i:19251080 original size:30 final size:30
Alignment explanation
Indices: 19251019--19251080 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 30
19251009 ATAACTTAAA
*
19251019 TTTAATACTTAATTTTTCAATACTTAATTT
1 TTTAATACTTAATTTTTCAACACTTAATTT
* *
19251049 TTTAATA-TTTATTTTTCCAACA-TTTATTT
1 TTTAATACTTAATTTTT-CAACACTTAATTT
19251078 TTT
1 TTT
19251081 GAGTTTTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 17 0.61
30 11 0.39
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.61
Consensus pattern (30 bp):
TTTAATACTTAATTTTTCAACACTTAATTT
Found at i:19252494 original size:20 final size:19
Alignment explanation
Indices: 19252448--19252499 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 19
19252438 CTAATGTATG
*
19252448 ATATATTAAATATTATTTTTT
1 ATATATT-AAT-TTATTATTT
19252469 AT-TATTAATTTATATATTT
1 ATATATTAATTTAT-TATTT
*
19252488 ATATATTTATTT
1 ATATATTAATTT
19252500 TAAGTGTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 4 0.15
19 9 0.33
20 12 0.44
21 2 0.07
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
ATATATTAATTTATTATTT
Found at i:19252576 original size:24 final size:24
Alignment explanation
Indices: 19252549--19252608 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 24
19252539 ACTAATTCAG
*
19252549 TTATAAAATTATTAAAATATTTTT
1 TTATAAAATTATTAAAATATATTT
* * *
19252573 TTAT-ATATAAGTTAAATTATATTT
1 TTATAAAATTA-TTAAAATATATTT
19252597 TT-TAAAATTATT
1 TTATAAAATTATT
19252609 TTTATTTTTT
Statistics
Matches: 28, Mismatches: 6, Indels: 5
0.72 0.15 0.13
Matches are distributed among these distances:
23 7 0.25
24 21 0.75
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (24 bp):
TTATAAAATTATTAAAATATATTT
Found at i:19252664 original size:17 final size:17
Alignment explanation
Indices: 19252625--19252668 Score: 58
Period size: 15 Copynumber: 2.8 Consensus size: 17
19252615 TTTTATATAC
*
19252625 TAAATTAATAA-AAATT
1 TAAATTCATAATAAATT
19252641 T-AA-TCATAATAAATT
1 TAAATTCATAATAAATT
19252656 TAAATTCATAATA
1 TAAATTCATAATA
19252669 CCATACATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
14 5 0.21
15 8 0.33
16 3 0.12
17 8 0.33
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (17 bp):
TAAATTCATAATAAATT
Found at i:19256886 original size:81 final size:80
Alignment explanation
Indices: 19256790--19257556 Score: 382
Period size: 81 Copynumber: 9.5 Consensus size: 80
19256780 GCAGGAAGGG
* * *
19256790 ATTTGGAAGAAAAATATGCTACAGCTTACTTTCACAAAACTTCTGATTCTGCAAATCACTTTGAT
1 ATTTGGAAGACAAATATGCTACGGCTTACTTTCACAAAACTTCTGATTCTGAAAAT--C-TTGAT
* *
19256855 -G-G-AGGTGATGTGAAGA
63 AGAGAAAG-GAGGTGAAGA
* * * * *
19256871 ATTTGGAAGACAAATATTCTACGGCTTACTTCCACAAAGCTTTTGATGCTGAAAATCTTGATAGA
1 ATTTGGAAGACAAATATGCTACGGCTTACTTTCACAAAACTTCTGATTCTGAAAATCTTGATAGA
*
19256936 GAAAAGGAGGTGACGA
66 G-AAAGGAGGTGAAGA
* * * ***
19256952 GTTTGGAAGACAAGTATGCTACGGCTTACTTTTACAAAACTTCTGATTCTGAAAGCCATGGCGA-
1 ATTTGGAAGACAAATATGCTACGGCTTACTTTCACAAAACTTCTGATTCTGAAA---ATCTTGAT
* * *
19257016 AGGGAAA-GAAGTGAAGG
63 AGAGAAAGGAGGTGAAGA
* * **** * ** * **
19257033 GTTTGGAAGATAAATATGCTAATATTTACTTCCACAAAACTTCTGATTCTGAAAGCCATGGCGAC
1 ATTTGGAAGACAAATATGCTACGGCTTACTTTCACAAAACTTCTGATTCTGAAAATC-TTGATA-
* * *
19257098 GGGAAA-GAAGTGAAGG
64 GAGAAAGGAGGTGAAGA
* * ** * ***
19257114 GTTTGGAAGATAAATATGCTA-ATCTTTACTTCCACAAAACTTCTGATTCTGAAAGCCATGGCGA
1 ATTTGGAAGACAAATATGCTACGGC-TTACTTTCACAAAACTTCTGATTCTGAAA---ATCTTGA
* * *
19257178 -AGGGAAA-GAAGTGAAGG
62 TAGAGAAAGGAGGTGAAGA
* * * * ***
19257195 GTTTGGAAGACAAGTATGCTACGGCTTACTTTCACAAAACGTCTAATTCTGAAAGCCATGGCGA-
1 ATTTGGAAGACAAATATGCTACGGCTTACTTTCACAAAACTTCTGATTCTGAAA---ATCTTGAT
* * *
19257259 AGGGAAA-GAAGTGAAGG
63 AGAGAAAGGAGGTGAAGA
* * * ***
19257276 GTTTGGAAGACAAGTATACTACGGCTTACTTTCACAAAACTTCTGATTCTGAAAGCCATGGCGA-
1 ATTTGGAAGACAAATATGCTACGGCTTACTTTCACAAAACTTCTGATTCTGAAA---ATCTTGAT
* * *
19257340 AGGGAAA-GAAGTGAAGG
63 AGAGAAAGGAGGTGAAGA
* * * ***
19257357 GTTTGGAAGACAAGTATGCTACGGCTTACTTTCACAAAACTTCTAATTCTGAAAGCCATGGCGA-
1 ATTTGGAAGACAAATATGCTACGGCTTACTTTCACAAAACTTCTGATTCTGAAA---ATCTTGAT
* * *
19257421 AGGGAAA-GAAGTGAAGG
63 AGAGAAAGGAGGTGAAGA
* * * * **
19257438 GTTTGGAAGACAAATATGCTACTGCTTATTTTCATC-AAACTTCTAATTCTGAAAGCCATGGTGA
1 ATTTGGAAGACAAATATGCTACGGCTTACTTTCA-CAAAACTTCTGATTCTGAAA---ATCTTGA
* * *
19257502 AAG-GAAAGCA-ATGAAGA
62 TAGAGAAAGGAGGTGAAGA
* * * *
19257519 GTTTGGAAGACAAATATTCCACAGCTTACTTTCACAAA
1 ATTTGGAAGACAAATATGCTACGGCTTACTTTCACAAA
19257557 GCGTTTGATT
Statistics
Matches: 595, Mismatches: 72, Indels: 38
0.84 0.10 0.05
Matches are distributed among these distances:
78 5 0.01
79 3 0.01
80 3 0.01
81 565 0.95
82 11 0.02
83 4 0.01
84 4 0.01
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (80 bp):
ATTTGGAAGACAAATATGCTACGGCTTACTTTCACAAAACTTCTGATTCTGAAAATCTTGATAGA
GAAAGGAGGTGAAGA
Found at i:19257064 original size:162 final size:160
Alignment explanation
Indices: 19256784--19257556 Score: 858
Period size: 162 Copynumber: 4.8 Consensus size: 160
19256774 GGCAATGCAG
* * *
19256784 GAAGGGATTTGGAAGAAAAATATGCTACAGCTTACTTTCACAAAACTTCTGATTCTGCAAA-TCA
1 GAAGGG-TTTGGAAGACAAATATGCTACGGCTTACTTTCACAAAACTTCTGATTCTG-AAAGCCA
** * ** * ** * *
19256848 CT-TTG-ATGGAGGTGATGTGAAGAATTTGGAAGACAAATATTCTACGGCTTACTTCCACAAAGC
64 -TGGCGAAGGGA-AAGAAGTGAAGGGTTTGGAAGACAAATATGCTACGGCTTACTTCCACAAAAC
* * * ** * *
19256911 TTTTGATGCTGAAA-ATCTTGATAGAGAAAAGGAGGT
127 TTCTAATTCTGAAACATCGCGA-AG-GGAAA-GAAGT
* * * *
19256947 GACGAGTTTGGAAGACAAGTATGCTACGGCTTACTTTTACAAAACTTCTGATTCTGAAAGCCATG
1 GAAGGGTTTGGAAGACAAATATGCTACGGCTTACTTTCACAAAACTTCTGATTCTGAAAGCCATG
* ****
19257012 GCGAAGGGAAAGAAGTGAAGGGTTTGGAAGATAAATATGCTAATATTTACTTCCACAAAACTTCT
66 GCGAAGGGAAAGAAGTGAAGGGTTTGGAAGACAAATATGCTACGGCTTACTTCCACAAAACTTCT
* * *
19257077 GATTCTGAAAGCCATGGCGACGGGAAAGAAGT
131 AATTCTGAAA--CATCGCGAAGGGAAAGAAGT
* ** *
19257109 GAAGGGTTTGGAAGATAAATATGCTA-ATCTTTACTTCCACAAAACTTCTGATTCTGAAAGCCAT
1 GAAGGGTTTGGAAGACAAATATGCTACGGC-TTACTTTCACAAAACTTCTGATTCTGAAAGCCAT
* * *
19257173 GGCGAAGGGAAAGAAGTGAAGGGTTTGGAAGACAAGTATGCTACGGCTTACTTTCACAAAACGTC
65 GGCGAAGGGAAAGAAGTGAAGGGTTTGGAAGACAAATATGCTACGGCTTACTTCCACAAAACTTC
*
19257238 TAATTCTGAAAGCCATGGCGAAGGGAAAGAAGT
130 TAATTCTGAAA--CATCGCGAAGGGAAAGAAGT
* *
19257271 GAAGGGTTTGGAAGACAAGTATACTACGGCTTACTTTCACAAAACTTCTGATTCTGAAAGCCATG
1 GAAGGGTTTGGAAGACAAATATGCTACGGCTTACTTTCACAAAACTTCTGATTCTGAAAGCCATG
* *
19257336 GCGAAGGGAAAGAAGTGAAGGGTTTGGAAGACAAGTATGCTACGGCTTACTTTCACAAAACTTCT
66 GCGAAGGGAAAGAAGTGAAGGGTTTGGAAGACAAATATGCTACGGCTTACTTCCACAAAACTTCT
*
19257401 AATTCTGAAAGCCATGGCGAAGGGAAAGAAGT
131 AATTCTGAAA--CATCGCGAAGGGAAAGAAGT
* * *
19257433 GAAGGGTTTGGAAGACAAATATGCTACTGCTTATTTTCATC-AAACTTCTAATTCTGAAAGCCAT
1 GAAGGGTTTGGAAGACAAATATGCTACGGCTTACTTTCA-CAAAACTTCTGATTCTGAAAGCCAT
* * * * * * *
19257497 GGTGAAAGGAAAGCAA-TGAAGAGTTTGGAAGACAAATATTCCACAGCTTACTTTCACAAA
65 GGCGAAGGGAAAG-AAGTGAAGGGTTTGGAAGACAAATATGCTACGGCTTACTTCCACAAA
19257557 GCGTTTGATT
Statistics
Matches: 533, Mismatches: 67, Indels: 21
0.86 0.11 0.03
Matches are distributed among these distances:
161 5 0.01
162 507 0.95
163 16 0.03
164 1 0.00
165 4 0.01
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (160 bp):
GAAGGGTTTGGAAGACAAATATGCTACGGCTTACTTTCACAAAACTTCTGATTCTGAAAGCCATG
GCGAAGGGAAAGAAGTGAAGGGTTTGGAAGACAAATATGCTACGGCTTACTTCCACAAAACTTCT
AATTCTGAAACATCGCGAAGGGAAAGAAGT
Found at i:19257548 original size:243 final size:243
Alignment explanation
Indices: 19256952--19257556 Score: 914
Period size: 243 Copynumber: 2.5 Consensus size: 243
19256942 GAGGTGACGA
*
19256952 GTTTGGAAGACAAGTATGCTACGGCTTACTTTT-ACAAAACTTCTGATTCTGAAAGCCATGGCGA
1 GTTTGGAAGACAAGTATGCTACGGCTTA-TTTTCACAAAACTTCTAATTCTGAAAGCCATGGCGA
* * ** *
19257016 AGGGAAAGAAGTGAAGGGTTTGGAAGATAAATATGCTA-ATATTTACTTCCACAAAACTTCTGAT
65 AGGGAAAGAAGTGAAGGGTTTGGAAGACAAATATACTACA-GCTTACTTTCACAAAACTTCTGAT
* * *
19257080 TCTGAAAGCCATGGCGACGGGAAAGAAGTGAAGGGTTTGGAAGATAAATATGCTAATCTTTACTT
129 TCTGAAAGCCATGGCGAAGGGAAAGAAGTGAAGGGTTTGGAAGACAAATATGCTAAGCTTTACTT
*
19257145 CCACAAAACTTCTGATTCTGAAAGCCATGGCGAAGGGAAAGAAGTGAAGG
194 CCACAAAACTTCTAATTCTGAAAGCCATGGCGAAGGGAAAGAAGTGAAGG
* *
19257195 GTTTGGAAGACAAGTATGCTACGGCTTACTTTCACAAAACGTCTAATTCTGAAAGCCATGGCGAA
1 GTTTGGAAGACAAGTATGCTACGGCTTATTTTCACAAAACTTCTAATTCTGAAAGCCATGGCGAA
* *
19257260 GGGAAAGAAGTGAAGGGTTTGGAAGACAAGTATACTACGGCTTACTTTCACAAAACTTCTGATTC
66 GGGAAAGAAGTGAAGGGTTTGGAAGACAAATATACTACAGCTTACTTTCACAAAACTTCTGATTC
* * *
19257325 TGAAAGCCATGGCGAAGGGAAAGAAGTGAAGGGTTTGGAAGACAAGTATGCTACGGC-TTACTTT
131 TGAAAGCCATGGCGAAGGGAAAGAAGTGAAGGGTTTGGAAGACAAATATGCTA-AGCTTTACTTC
19257389 CACAAAACTTCTAATTCTGAAAGCCATGGCGAAGGGAAAGAAGTGAAGG
195 CACAAAACTTCTAATTCTGAAAGCCATGGCGAAGGGAAAGAAGTGAAGG
* * *
19257438 GTTTGGAAGACAAATATGCTACTGCTTATTTTCATC-AAACTTCTAATTCTGAAAGCCATGGTGA
1 GTTTGGAAGACAAGTATGCTACGGCTTATTTTCA-CAAAACTTCTAATTCTGAAAGCCATGGCGA
* * * *
19257502 AAGGAAAGCAA-TGAAGAGTTTGGAAGACAAATATTCCACAGCTTACTTTCACAAA
65 AGGGAAAG-AAGTGAAGGGTTTGGAAGACAAATATACTACAGCTTACTTTCACAAA
19257557 GCGTTTGATT
Statistics
Matches: 329, Mismatches: 28, Indels: 10
0.90 0.08 0.03
Matches are distributed among these distances:
242 3 0.01
243 322 0.98
244 4 0.01
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (243 bp):
GTTTGGAAGACAAGTATGCTACGGCTTATTTTCACAAAACTTCTAATTCTGAAAGCCATGGCGAA
GGGAAAGAAGTGAAGGGTTTGGAAGACAAATATACTACAGCTTACTTTCACAAAACTTCTGATTC
TGAAAGCCATGGCGAAGGGAAAGAAGTGAAGGGTTTGGAAGACAAATATGCTAAGCTTTACTTCC
ACAAAACTTCTAATTCTGAAAGCCATGGCGAAGGGAAAGAAGTGAAGG
Found at i:19274395 original size:13 final size:13
Alignment explanation
Indices: 19274377--19274401 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19274367 TATATATTTA
19274377 ATAAAATAAAATG
1 ATAAAATAAAATG
19274390 ATAAAATAAAAT
1 ATAAAATAAAAT
19274402 ACACCATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (13 bp):
ATAAAATAAAATG
Found at i:19274715 original size:18 final size:19
Alignment explanation
Indices: 19274673--19274715 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
19274663 TTGTATTTTT
*
19274673 TATTTTATTTTTTAAATAT
1 TATTTTATTTTTTAAATAA
* *
19274692 TTTTTTA-TTTTTAATTAA
1 TATTTTATTTTTTAAATAA
19274710 TATTTT
1 TATTTT
19274716 TAATATATTA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (19 bp):
TATTTTATTTTTTAAATAA
Found at i:19274715 original size:19 final size:19
Alignment explanation
Indices: 19274675--19274717 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
19274665 GTATTTTTTA
*
19274675 TTTTATTTTTTAAATATTT
1 TTTTATTTTTTAAATATAT
*
19274694 TTTTA-TTTTTAATTAATAT
1 TTTTATTTTTTAAAT-ATAT
19274713 TTTTA
1 TTTTA
19274718 ATATATTAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (19 bp):
TTTTATTTTTTAAATATAT
Found at i:19274814 original size:138 final size:136
Alignment explanation
Indices: 19274606--19274867 Score: 316
Period size: 138 Copynumber: 1.9 Consensus size: 136
19274596 TTGTCAGATA
* * ** * *
19274606 ATTAAATATTAGTGATTTTATCTTTAATCTCAGGTTCAATTCCTCTTTTACTCATATTTGTATTT
1 ATTAAATAATAGTGATTTTATCTTTAATCTCAGGTTCAATTCATCTTTTACAAACATTTGTAATT
* *
19274671 TTTATTTTAT-TT-TTTAAATATTTTTTTATTTTTAATTAATATTTTTAATATATTAACTCTATT
66 TTTATTTCATGTTGTTTAAA-A-TTTTTTATTTTTAATTAATATTTTTAAT-TAATAACTCTATT
19274734 GGTTAAATG
128 GGTTAAATG
* *
19274743 ATTAAATAATATTGATTTTATCCTTTACTC-CTAGGTTCAATTCATCTTTTGA-AAACATTTGTA
1 ATTAAATAATAGTGATTTTAT-CTTTAATCTC-AGGTTCAATTCATCTTTT-ACAAACATTTGTA
* * * *
19274806 ATTTTTATTTCATGTTGTTTCAAATTTTTTATTTTTTATTTATCTTTTTAATTAATAACTCT
63 ATTTTTATTTCATGTTGTTTAAAATTTTTTATTTTTAATTAATATTTTTAATTAATAACTCT
19274868 TTTATTTATA
Statistics
Matches: 106, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
137 29 0.27
138 68 0.64
139 4 0.04
140 5 0.05
ACGTcount: A:0.28, C:0.10, G:0.06, T:0.56
Consensus pattern (136 bp):
ATTAAATAATAGTGATTTTATCTTTAATCTCAGGTTCAATTCATCTTTTACAAACATTTGTAATT
TTTATTTCATGTTGTTTAAAATTTTTTATTTTTAATTAATATTTTTAATTAATAACTCTATTGGT
TAAATG
Found at i:19294764 original size:52 final size:50
Alignment explanation
Indices: 19294645--19294784 Score: 140
Period size: 52 Copynumber: 2.7 Consensus size: 50
19294635 AAGATGTGGT
*
19294645 ATGTGCTTCCATATAAGACCATAGCTGGGCTATGGCATCGGTACAATGTAA
1 ATGTGATTCCATATAAGACCATAGCTGGGCTATGGCATCGGTA-AATGTAA
* * * *
19294696 TTTTTATT-CATGTATAAGACCATAGCTGGGCTATGGCATCGTGT-GATGTGAAA
1 ATGTGATTCCA--TATAAGACCATAGCTGGGCTATGGCATCG-GTAAATGT--AA
* * *
19294749 ATGTGATTCCATATAAGATCATATCTGGGATATGGC
1 ATGTGATTCCATATAAGACCATAGCTGGGCTATGGC
19294785 TGCGGTATGA
Statistics
Matches: 72, Mismatches: 11, Indels: 11
0.77 0.12 0.12
Matches are distributed among these distances:
50 2 0.03
51 8 0.11
52 51 0.71
53 9 0.12
54 2 0.03
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.32
Consensus pattern (50 bp):
ATGTGATTCCATATAAGACCATAGCTGGGCTATGGCATCGGTAAATGTAA
Found at i:19295631 original size:20 final size:20
Alignment explanation
Indices: 19295606--19295658 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
19295596 ACGGTTGAAG
*
19295606 CACACGGGCATGTTCCAGGC
1 CACACGGGCATGTTCCAAGC
*
19295626 CACACGGGCGTGTTCCAAGC
1 CACACGGGCATGTTCCAAGC
19295646 CACACGGGCATGT
1 CACACGGGCATGT
19295659 GCCCCTATCT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.21, C:0.34, G:0.30, T:0.15
Consensus pattern (20 bp):
CACACGGGCATGTTCCAAGC
Found at i:19296899 original size:14 final size:13
Alignment explanation
Indices: 19296874--19296900 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
19296864 TTGATTTATG
19296874 TGTAACTTTTTTT
1 TGTAACTTTTTTT
19296887 TGTAACTTTTTTT
1 TGTAACTTTTTTT
19296900 T
1 T
19296901 AACTTGTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.07, G:0.07, T:0.70
Consensus pattern (13 bp):
TGTAACTTTTTTT
Found at i:19298296 original size:39 final size:39
Alignment explanation
Indices: 19298252--19298460 Score: 179
Period size: 39 Copynumber: 5.2 Consensus size: 39
19298242 AAATACCAAT
* *
19298252 AATTTAAAAATAGGATAAAAAATAAAATATGAACAGATA
1 AATTTAAAAACAGGATTAAAAATAAAATATGAACAGATA
* * **
19298291 AATTTAGAAACAAGATTAAAAATAAAATATGGTCAGATA
1 AATTTAAAAACAGGATTAAAAATAAAATATGAACAGATA
** * *
19298330 AATTTAAAAACAATATTAAAAATAAATTATGAACATATACCAA
1 AATTTAAAAACAGGATTAAAAATAAAATATGAACAGAT----A
* *
19298373 TAATTTAAAAACAGGATT-AAAA-AAATTATGAATAGATACCAA
1 -AATTTAAAAACAGGATTAAAAATAAAATATGAACAGAT----A
* * *
19298415 TAATTTAAAAACAGGATTAAAAATAAAACAGGAACATATA
1 -AATTTAAAAACAGGATTAAAAATAAAATATGAACAGATA
19298455 AATTTA
1 AATTTA
19298461 GGCTTGGGAT
Statistics
Matches: 142, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
39 71 0.50
40 1 0.01
42 36 0.25
43 9 0.06
44 25 0.18
ACGTcount: A:0.59, C:0.06, G:0.09, T:0.26
Consensus pattern (39 bp):
AATTTAAAAACAGGATTAAAAATAAAATATGAACAGATA
Found at i:19298412 original size:42 final size:42
Alignment explanation
Indices: 19298226--19298437 Score: 174
Period size: 39 Copynumber: 5.1 Consensus size: 42
19298216 AACAATATTA
* * *
19298226 AAAATAAATTATGAACAAATACCAATAATTTAAAAATAGGATAA
1 AAAA-AAATTATGAACAGATACCAATAATTTAAAAACAGGAT-T
* * *
19298270 AAAATAAAATATGAACAGAT----A-AATTTAGAAACAAGATT
1 AAAA-AAATTATGAACAGATACCAATAATTTAAAAACAGGATT
* ** **
19298308 AAAAATAAAATATGGTCAGAT----A-AATTTAAAAACAATATT
1 -AAAA-AAATTATGAACAGATACCAATAATTTAAAAACAGGATT
*
19298347 AAAAATAAATTATGAACATATACCAATAATTTAAAAACAGGATT
1 -AAAA-AAATTATGAACAGATACCAATAATTTAAAAACAGGATT
*
19298391 AAAAAAATTATGAATAGATACCAATAATTTAAAAACAGGATT
1 AAAAAAATTATGAACAGATACCAATAATTTAAAAACAGGATT
19298433 AAAAA
1 AAAAA
19298438 TAAAACAGGA
Statistics
Matches: 144, Mismatches: 18, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
39 64 0.44
40 1 0.01
42 41 0.28
43 5 0.03
44 33 0.23
ACGTcount: A:0.60, C:0.07, G:0.08, T:0.25
Consensus pattern (42 bp):
AAAAAAATTATGAACAGATACCAATAATTTAAAAACAGGATT
Found at i:19300221 original size:24 final size:22
Alignment explanation
Indices: 19300194--19300260 Score: 75
Period size: 21 Copynumber: 3.0 Consensus size: 22
19300184 CACTAACAGT
19300194 ATTTGGTTATTCATCTTCAACAAA
1 ATTTGG-T-TTCATCTTCAACAAA
*
19300218 ATTT-GTTTCCTCTTCAACAAA
1 ATTTGGTTTCATCTTCAACAAA
* *
19300239 ATTT-GTTTCCTTTTCAACAAA
1 ATTTGGTTTCATCTTCAACAAA
19300260 A
1 A
19300261 CACCAATATG
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
21 35 0.85
22 1 0.02
23 1 0.02
24 4 0.10
ACGTcount: A:0.31, C:0.19, G:0.06, T:0.43
Consensus pattern (22 bp):
ATTTGGTTTCATCTTCAACAAA
Found at i:19300233 original size:21 final size:21
Alignment explanation
Indices: 19300207--19300260 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
19300197 TGGTTATTCA
19300207 TCTTCAACAAAATTTGTTTCC
1 TCTTCAACAAAATTTGTTTCC
19300228 TCTTCAACAAAATTTGTTTCC
1 TCTTCAACAAAATTTGTTTCC
*
19300249 TTTTCAACAAAA
1 TCTTCAACAAAA
19300261 CACCAATATG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.33, C:0.22, G:0.04, T:0.41
Consensus pattern (21 bp):
TCTTCAACAAAATTTGTTTCC
Found at i:19302115 original size:25 final size:25
Alignment explanation
Indices: 19302069--19302118 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
19302059 ACAATAATCA
*
19302069 GAGTTTAAGTGGGAAACTAAAAACT
1 GAGTTTAAGTGGGAAACGAAAAACT
*
19302094 GAGTTTAATTGGGAGAA-GAAAAACT
1 GAGTTTAAGTGGGA-AACGAAAAACT
19302119 AAAAAATACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.44, C:0.06, G:0.26, T:0.24
Consensus pattern (25 bp):
GAGTTTAAGTGGGAAACGAAAAACT
Found at i:19302351 original size:24 final size:24
Alignment explanation
Indices: 19302306--19302351 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
19302296 ACACTAATCA
*
19302306 GAGTTTAAGTGGGAAACTAAAACG
1 GAGTTTAAGTGGGAAACGAAAACG
*
19302330 GAGTTTAATTGGGAGAA-GAAAA
1 GAGTTTAAGTGGGA-AACGAAAA
19302352 ACTAAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 17 0.89
25 2 0.11
ACGTcount: A:0.43, C:0.04, G:0.30, T:0.22
Consensus pattern (24 bp):
GAGTTTAAGTGGGAAACGAAAACG
Found at i:19302464 original size:236 final size:237
Alignment explanation
Indices: 19302050--19302526 Score: 884
Period size: 236 Copynumber: 2.0 Consensus size: 237
19302040 AATAATATTA
*
19302050 AAATAACCAACAATAATCAGAGTTTAAGTGGGAAACTAAAAACTGAGTTTAATTGGGAGAAGAAA
1 AAATAACCAACAATAATCAGAGTTTAAGTGGGAAACTAAAAACGGAGTTTAATTGGGAGAAGAAA
*
19302115 AACTAAAAAATACGAGGCATAATTCCACGAATCTCCACCTTGACTCATATTTTCACAGCACCTTC
66 AACTAAAAAATACGAGGCATAACTCCACGAATCTCCACCTTGACTCATATTTTCACAGCACCTTC
19302180 TTTGCGAAAGCCAATCATGGGCTTATCTCAAACTATGCAAGATATTAATTGAGTTGAAGTTGTGT
131 TTTGCGAAAGCCAATCATGGGCTTATCTCAAACTATGCAAGATATTAATTGAGTTGAAGTTGTGT
19302245 TTAGAAGCTAGAAGTCTTTTAGTCTTCGACTTGTGCACTATC
196 TTAGAAGCTAGAAGTCTTTTAGTCTTCGACTTGTGCACTATC
*
19302287 AAATAACCAACACTAATCAGAGTTTAAGTGGGAAACT-AAAACGGAGTTTAATTGGGAGAAGAAA
1 AAATAACCAACAATAATCAGAGTTTAAGTGGGAAACTAAAAACGGAGTTTAATTGGGAGAAGAAA
* *
19302351 AACTAAAAAATACGAGGCATAACTCCACGAATCTCTACCTTGACTCGTATTTTCACAGCACCTTC
66 AACTAAAAAATACGAGGCATAACTCCACGAATCTCCACCTTGACTCATATTTTCACAGCACCTTC
* *
19302416 TTTGCGAAAGCCCATCATGGGCTTATCTCGAACTATGCAAGATATTAATTGAGTTGAAGTTGTGT
131 TTTGCGAAAGCCAATCATGGGCTTATCTCAAACTATGCAAGATATTAATTGAGTTGAAGTTGTGT
19302481 TTAGAAGCTAGAAGTCTTTTAGTCTTCGACTTGTGCACTATC
196 TTAGAAGCTAGAAGTCTTTTAGTCTTCGACTTGTGCACTATC
19302523 AAAT
1 AAAT
19302527 CAAAACTGAC
Statistics
Matches: 233, Mismatches: 7, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
236 197 0.85
237 36 0.15
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (237 bp):
AAATAACCAACAATAATCAGAGTTTAAGTGGGAAACTAAAAACGGAGTTTAATTGGGAGAAGAAA
AACTAAAAAATACGAGGCATAACTCCACGAATCTCCACCTTGACTCATATTTTCACAGCACCTTC
TTTGCGAAAGCCAATCATGGGCTTATCTCAAACTATGCAAGATATTAATTGAGTTGAAGTTGTGT
TTAGAAGCTAGAAGTCTTTTAGTCTTCGACTTGTGCACTATC
Found at i:19303360 original size:30 final size:30
Alignment explanation
Indices: 19303326--19303384 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
19303316 TCAACAGATG
19303326 ACTCTTCACATCCTCGAATGAGAGATTAAA
1 ACTCTTCACATCCTCGAATGAGAGATTAAA
19303356 ACTCTTCACATCCTCGAATGAGAGATTAA
1 ACTCTTCACATCCTCGAATGAGAGATTAA
19303385 CTCTGCCATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.27
Consensus pattern (30 bp):
ACTCTTCACATCCTCGAATGAGAGATTAAA
Found at i:19305415 original size:13 final size:13
Alignment explanation
Indices: 19305397--19305421 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19305387 TTAGAAGGAG
19305397 ATTAAATTAATTA
1 ATTAAATTAATTA
19305410 ATTAAATTAATT
1 ATTAAATTAATT
19305422 TTAATATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTAAATTAATTA
Found at i:19311151 original size:20 final size:22
Alignment explanation
Indices: 19311093--19311149 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 22
19311083 GATATCCATT
*
19311093 ATATTTATTAAAAAAATTCAGA
1 ATATTTATTAAAAAAATTCAAA
** *
19311115 ATA-ACATTCAAAAAATT-AAA
1 ATATTTATTAAAAAAATTCAAA
19311135 ATATTTATTAAAAAA
1 ATATTTATTAAAAAA
19311150 TTTTAAAGTT
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
20 5 0.19
21 19 0.70
22 3 0.11
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (22 bp):
ATATTTATTAAAAAAATTCAAA
Found at i:19311448 original size:28 final size:29
Alignment explanation
Indices: 19311406--19311466 Score: 88
Period size: 28 Copynumber: 2.1 Consensus size: 29
19311396 TTAACAAGAT
* *
19311406 TTTAATTTGATATGTTTAATAATTTTT-A
1 TTTAATATGACATGTTTAATAATTTTTAA
*
19311434 TTTAATATGACATGTTTAATAGTTTTTAA
1 TTTAATATGACATGTTTAATAATTTTTAA
19311463 TTTA
1 TTTA
19311467 CTTTGAACAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 24 0.83
29 5 0.17
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.57
Consensus pattern (29 bp):
TTTAATATGACATGTTTAATAATTTTTAA
Found at i:19313332 original size:26 final size:26
Alignment explanation
Indices: 19313296--19313348 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19313286 TAACGATTTG
19313296 ATGGAAAAGGGTTACCTAATCAACTA
1 ATGGAAAAGGGTTACCTAATCAACTA
19313322 ATGGAAAAGGGTTACCTAATCAACTA
1 ATGGAAAAGGGTTACCTAATCAACTA
19313348 A
1 A
19313349 CTTCTCAGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.43, C:0.15, G:0.19, T:0.23
Consensus pattern (26 bp):
ATGGAAAAGGGTTACCTAATCAACTA
Found at i:19314779 original size:22 final size:22
Alignment explanation
Indices: 19314745--19314789 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
19314735 AACATTAAAT
19314745 ATTTGCAGATAAACTGCCAGTA
1 ATTTGCAGATAAACTGCCAGTA
* * * *
19314767 ATTTGTAGTTAAATTGCTAGTA
1 ATTTGCAGATAAACTGCCAGTA
19314789 A
1 A
19314790 AAAGTTTGTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.36
Consensus pattern (22 bp):
ATTTGCAGATAAACTGCCAGTA
Found at i:19320781 original size:14 final size:14
Alignment explanation
Indices: 19320762--19320797 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
19320752 TTTCTTTCTC
*
19320762 TCTGTTTTTCTGCT
1 TCTGTTTCTCTGCT
19320776 TCTGTTTCTCTGCT
1 TCTGTTTCTCTGCT
19320790 TCTTGTTT
1 TC-TGTTT
19320798 ATACTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 15 0.75
15 5 0.25
ACGTcount: A:0.00, C:0.22, G:0.14, T:0.64
Consensus pattern (14 bp):
TCTGTTTCTCTGCT
Found at i:19321673 original size:44 final size:44
Alignment explanation
Indices: 19321325--19321835 Score: 156
Period size: 44 Copynumber: 11.1 Consensus size: 44
19321315 AGATTTGTTG
* * * * * *
19321325 TTGTAGTTTCAATCCAATCCACTACAACTTTAGGGATATAAGAT
1 TTGTAGCTTCAATCTACTCCATTGCAACTTCAGGGATATAAGAT
* * * * * *
19321369 TTGTAGCTTCAATCTGCTTCACTGTAACTTAAGGGAGATAAGATT
1 TTGTAGCTTCAATCTACTCCATTGCAACTTCAGGGATATAAGA-T
** * * * * *
19321414 CACTATAGTAGAATCAATCCGACT-CACTGCAACTTTAGGGGTTTAAGAT
1 ---T-T-GTAGCTTCAAT-CTACTCCATTGCAACTTCAGGGATATAAGAT
* * * * * *
19321463 TTGTAGTTTCAATCTACTCTATTGCAATTTTAGGGAGATAAAATT
1 TTGTAGCTTCAATCTACTCCATTGCAACTTCAGGGATATAAGA-T
* * * * * * *
19321508 CGCTATGGTAGATTCAATCCGAC-CTACTGCAACTTTAGGGGTATAGGAT
1 ---T-T-GTAGCTTCAAT-CTACTCCATTGCAACTTCAGGGATATAAGAT
* * * * * *
19321557 TTGTAGCTTCAATCTGCTCCACTACGACTTCAAAGG-TATAGGATTTGTT
1 TTGTAGCTTCAATCTACTCCATTGCAACTTC-AGGGATATA--A---GAT
* * * *
19321606 GTTGTAGTTTCAATCCAAC-CCATTACAACTTCAGGGATATAATAT
1 -TTGTAGCTTCAAT-CTACTCCATTGCAACTTCAGGGATATAAGAT
* * *
19321651 TTGTAGCTTCAATCTGCTCCATTGCATCTTCAGGGAGATAAGATTCGT
1 TTGTAGCTTCAATCTACTCCATTGCAACTTCAGGGATATAAGA----T
* * * * * * *
19321699 TATAGTAGAATT-AATCCAAC-CCACTACAACTTCAGGGGTATAAAAA
1 T-T-GTAG-CTTCAAT-CTACTCCATTGCAACTTCAGGGATATAAGAT
* * * *
19321745 TTATAGCTTCAATCTGA-TCCATCGCTACTTCAGGGATATAGGAT
1 TTGTAGCTTCAATCT-ACTCCATTGCAACTTCAGGGATATAAGAT
* *
19321789 TTGTAGCTTC-ATCTTACTCCATTGCAACTTCATGGAGATAAGAT
1 TTGTAGCTTCAATC-TACTCCATTGCAACTTCAGGGATATAAGAT
19321833 TTG
1 TTG
19321836 CTATCATAGT
Statistics
Matches: 340, Mismatches: 88, Indels: 78
0.67 0.17 0.15
Matches are distributed among these distances:
43 15 0.04
44 176 0.52
45 9 0.03
46 3 0.01
48 5 0.01
49 10 0.03
50 110 0.32
51 12 0.04
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.34
Consensus pattern (44 bp):
TTGTAGCTTCAATCTACTCCATTGCAACTTCAGGGATATAAGAT
Found at i:19321766 original size:94 final size:94
Alignment explanation
Indices: 19321289--19321789 Score: 436
Period size: 94 Copynumber: 5.3 Consensus size: 94
19321279 AATTTCATCT
* * * * * * * * *
19321289 TGCTCCATTGTAACTTTAAGGAGATAAGATTTGTTGTTGTAGTTTCAATCCAATCCACTACAACT
1 TGCTCCATTGCATCTTCAGGGAGATAAGATTCGTTATAGTAGATTCAATCCAACCCACTACAACT
*
19321354 TTAGGGATATAAGATTTGTAGCTTCAATC
66 TTAGGGGTATAAGATTTGTAGCTTCAATC
* * * * * ** * * * *
19321383 TGCTTCACTGTAACTTAAGGGAGATAAGATTCACTATAGTAGAATCAATCCGACTCACTGCAACT
1 TGCTCCATTGCATCTTCAGGGAGATAAGATTCGTTATAGTAGATTCAATCCAACCCACTACAACT
* *
19321448 TTAGGGGTTTAAGATTTGTAGTTTCAATC
66 TTAGGGGTATAAGATTTGTAGCTTCAATC
* * * * * * * * *
19321477 TACTCTATTGCAAT-TTTAGGGAGATAAAATTCGCTATGGTAGATTCAATCCGACCTACTGCAAC
1 TGCTCCATTGC-ATCTTCAGGGAGATAAGATTCGTTATAGTAGATTCAATCCAACCCACTACAAC
*
19321541 TTTAGGGGTATAGGATTTGTAGCTTCAATC
65 TTTAGGGGTATAAGATTTGTAGCTTCAATC
* * * * * * * * * *
19321571 TGCTCCACTACGA-CTTCAAAGG-TATAGGATTTGTTGTTGTAGTTTCAATCCAACCCATTACAA
1 TGCTCCATTGC-ATCTTC-AGGGAGATAAGATTCGTTATAGTAGATTCAATCCAACCCACTACAA
* * *
19321634 CTTCAGGGATATAATATTTGTAGCTTCAATC
64 CTTTAGGGGTATAAGATTTGTAGCTTCAATC
19321665 TGCTCCATTGCATCTTCAGGGAGATAAGATTCGTTATAGTAGAATT-AATCCAACCCACTACAAC
1 TGCTCCATTGCATCTTCAGGGAGATAAGATTCGTTATAGTAG-ATTCAATCCAACCCACTACAAC
* * * *
19321729 TTCAGGGGTATAAAAATTATAGCTTCAATC
65 TTTAGGGGTATAAGATTTGTAGCTTCAATC
* * * *
19321759 TGATCCATCGC-TACTTCAGGGATATAGGATT
1 TGCTCCATTGCAT-CTTCAGGGAGATAAGATT
19321790 TGTAGCTTCA
Statistics
Matches: 325, Mismatches: 75, Indels: 14
0.79 0.18 0.03
Matches are distributed among these distances:
93 5 0.02
94 314 0.97
95 6 0.02
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (94 bp):
TGCTCCATTGCATCTTCAGGGAGATAAGATTCGTTATAGTAGATTCAATCCAACCCACTACAACT
TTAGGGGTATAAGATTTGTAGCTTCAATC
Found at i:19321913 original size:138 final size:138
Alignment explanation
Indices: 19321631--19321929 Score: 340
Period size: 138 Copynumber: 2.2 Consensus size: 138
19321621 CAACCCATTA
* * *
19321631 CAACTTCAGGGATATAATATTTGTAGCTTCAATCTGCTCCATTGCATCTTCAGGGAGATAAGATT
1 CAACTTCAGGGATATAAGATTTGTAGCTTCAATCTACTCCATTGCAACTTCAGGGAGATAAGATT
*
19321696 CGTTATAGTAGAATTAATCCAACCCACTACAACTTCAGGGGTATAAAAATTATAGCTTCAATCTG
66 CGCTATAGTAGAATTAATCCAACCCACTACAACTTCAGGGGTATAAAAATTATAGCTTCAATCTG
19321761 ATCCATCG
131 ATCCATCG
* * *
19321769 CTACTTCAGGGATATAGGATTTGTAGCTTC-ATCTTACTCCATTGCAACTTCATGGAGATAAGAT
1 CAACTTCAGGGATATAAGATTTGTAGCTTCAATC-TACTCCATTGCAACTTCAGGGAGATAAGAT
* * * ** * * * *
19321833 TTGCTATCA-TAG-TTTCATTCCAACCCACTGA-AACTTTGGGGGTATAAGATTTGTAGTTTC-A
65 TCGCTAT-AGTAGAATT-AATCCAACCCACT-ACAACTTCAGGGGTATAAAAATTATAGCTTCAA
*
19321894 TCTTGCTCCA-CTG
127 TC-TGATCCATC-G
*
19321907 CAACTTCAGGGAGATAAGATTTG
1 CAACTTCAGGGATATAAGATTTG
19321930 CCCTCGTAGT
Statistics
Matches: 135, Mismatches: 20, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
137 9 0.07
138 124 0.92
139 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (138 bp):
CAACTTCAGGGATATAAGATTTGTAGCTTCAATCTACTCCATTGCAACTTCAGGGAGATAAGATT
CGCTATAGTAGAATTAATCCAACCCACTACAACTTCAGGGGTATAAAAATTATAGCTTCAATCTG
ATCCATCG
Found at i:19321916 original size:232 final size:232
Alignment explanation
Indices: 19321539--19322110 Score: 609
Period size: 232 Copynumber: 2.5 Consensus size: 232
19321529 ACCTACTGCA
* * * * * * *
19321539 ACTTTAGGGGTATAGGATTTGTAGCTTCAATC-TGCTCCACTACGACTTCAAAGG-TATAGGATT
1 ACTTCAGGGATATAGGATTTGTAGCTTC-ATCTTACTCCACTGCAACTTC-AAGGAGATAAGATT
* * ** * *
19321602 TGTTGTTGTAGTTTCAATCCAACCCA-TTACAACTTCAGGGATATAATATTTGTAGCTTCAATCT
64 TGCTATCATAGTTTCAATCCAACCCACTGA-AACTTCAGGGATATAAGATTTGTAGCTTCAATCT
* * **
19321666 GCTCCATTGCATCTTCAGGGAGATAAGATTCGTTATAGTAGAATT-AATCCAACCCACTACAACT
128 GCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATAGTAG-ATTCAATCCAACCCACTACAACT
* * * *
19321730 TCAGGGGTATAAAAATTATAGCTTCAA-TCTGATCCATCGCT
192 TCAGGGGTATAAAAATTATAACTTCAATTC-AATCAATCGCG
* *
19321771 ACTTCAGGGATATAGGATTTGTAGCTTCATCTTACTCCATTGCAACTTCATGGAGATAAGATTTG
1 ACTTCAGGGATATAGGATTTGTAGCTTCATCTTACTCCACTGCAACTTCAAGGAGATAAGATTTG
* ** * *
19321836 CTATCATAGTTTCATTCCAACCCACTGAAACTTTGGGGGTATAAGATTTGTAGTTTC-ATCTTGC
66 CTATCATAGTTTCAATCCAACCCACTGAAACTTCAGGGATATAAGATTTGTAGCTTCAATC-TGC
* * * * * * *
19321900 TCCACTGCAACTTCAGGGAGATAAGATTTGCCCTCGTAGTTTCATTTCGACCCACTACAACTTCA
130 TCCACTGCAACTTCAGGGAGATAAGATTCGCCATAGTAGATTCAATCCAACCCACTACAACTTCA
** * * *
19321965 GGGGTATATGAATTGTAACTTTAATTCAATCAATTGCG
195 GGGGTATAAAAATTATAACTTCAATTCAATCAATCGCG
* *
19322003 ACTTCAGGGATATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAAGGAGATAATATTTG
1 ACTTCAGGGATATAGGATTTGTAGCTTCATCTTACTCCACTGCAACTTCAAGGAGATAAGATTTG
** * * *
19322068 CTATGGTAGGTTCAATCCAACACACTGCAACTTCAAGGG-TATA
66 CTATCATAGTTTCAATCCAACCCACTGAAACTTC-AGGGATATA
19322111 GGATCTATGA
Statistics
Matches: 281, Mismatches: 52, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
231 11 0.04
232 263 0.94
233 7 0.02
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (232 bp):
ACTTCAGGGATATAGGATTTGTAGCTTCATCTTACTCCACTGCAACTTCAAGGAGATAAGATTTG
CTATCATAGTTTCAATCCAACCCACTGAAACTTCAGGGATATAAGATTTGTAGCTTCAATCTGCT
CCACTGCAACTTCAGGGAGATAAGATTCGCCATAGTAGATTCAATCCAACCCACTACAACTTCAG
GGGTATAAAAATTATAACTTCAATTCAATCAATCGCG
Found at i:19321953 original size:94 final size:94
Alignment explanation
Indices: 19321771--19321981 Score: 271
Period size: 94 Copynumber: 2.2 Consensus size: 94
19321761 ATCCATCGCT
* * * *
19321771 ACTTCAGGGATATAGGATTTGTAGCTTCATCTTACTCCATTGCAACTTCATGGAGATAAGATTTG
1 ACTTCAGGGGTATAAGATTTGTAGCTTCATCTTACTCCACTGCAACTTCAGGGAGATAAGATTTG
*
19321836 CTATCATAGTTTCATTCCAACCCACTGA-A
66 CCATCATAGTTTCATTCCAACCCACT-ACA
** * *
19321865 ACTTTGGGGGTATAAGATTTGTAGTTTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTTG
1 ACTTCAGGGGTATAAGATTTGTAGCTTCATCTTACTCCACTGCAACTTCAGGGAGATAAGATTTG
* * * *
19321930 CCCTCGTAGTTTCATTTCGACCCACTACA
66 CCATCATAGTTTCATTCCAACCCACTACA
* *
19321959 ACTTCAGGGGTATATGAATTGTA
1 ACTTCAGGGGTATAAGATTTGTA
19321982 ACTTTAATTC
Statistics
Matches: 99, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
93 1 0.01
94 98 0.99
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (94 bp):
ACTTCAGGGGTATAAGATTTGTAGCTTCATCTTACTCCACTGCAACTTCAGGGAGATAAGATTTG
CCATCATAGTTTCATTCCAACCCACTACA
Found at i:19322051 original size:44 final size:44
Alignment explanation
Indices: 19321631--19322067 Score: 154
Period size: 44 Copynumber: 9.5 Consensus size: 44
19321621 CAACCCATTA
* *
19321631 CAACTTCAGGGATATAATATTTGTAGCTTCAATC-TGCTCCATTG
1 CAACTTCAGGGATATAAGATTTGTAGCTTC-ATCTTGCTCCACTG
* * * * *** *
19321675 CATCTTCAGGGAGATAAGATTCGTTATAGTAGAATTAATCCAAC-CCACTA
1 CAACTTCAGGGATATAAGA----TT-T-GTAG-CTTCATCTTGCTCCACTG
* * * * *
19321725 CAACTTCAGGGGTATAAAAATTATAGCTTCAATC-TGATCCA-TCG
1 CAACTTCAGGGATATAAGATTTGTAGCTTC-ATCTTGCTCCACT-G
* * * *
19321769 CTACTTCAGGGATATAGGATTTGTAGCTTCATCTTACTCCATTG
1 CAACTTCAGGGATATAAGATTTGTAGCTTCATCTTGCTCCACTG
* * * * * *
19321813 CAACTTCATGGAGATAAGATTTGCTATCATAGT-TTCATTCCAACCCACTG
1 CAACTTCAGGGATATAAGATTTG-TAGC-T--TCATC-TTGC--TCCACTG
* ** * *
19321863 AAACTTTGGGGGTATAAGATTTGTAGTTTCATCTTGCTCCACTG
1 CAACTTCAGGGATATAAGATTTGTAGCTTCATCTTGCTCCACTG
* * *
19321907 CAACTTCAGGGAGATAAGATTTGCCCTCGTAGTTTCAT-TTCGAC-CCACTA
1 CAACTTCAGGGATATAAGA-TT----T-GTAGCTTCATCTT-G-CTCCACTG
* * * * * * * *
19321957 CAACTTCAGGGGTATATGAATTGTAACTTTA-ATT-CAATCAATTG
1 CAACTTCAGGGATATAAGATTTGTAGCTTCATCTTGC--TCCACTG
* *
19322001 CGACTTCAGGGATATAGGATTTGTAGCTTCATCTTGCTCCACTG
1 CAACTTCAGGGATATAAGATTTGTAGCTTCATCTTGCTCCACTG
* * *
19322045 CAACTTCAAGGAGATAATATTTG
1 CAACTTCAGGGATATAAGATTTG
19322068 CTATGGTAGG
Statistics
Matches: 279, Mismatches: 79, Indels: 70
0.65 0.18 0.16
Matches are distributed among these distances:
41 1 0.00
43 6 0.02
44 153 0.55
45 10 0.04
46 7 0.03
47 4 0.01
48 7 0.03
49 7 0.03
50 80 0.29
51 4 0.01
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (44 bp):
CAACTTCAGGGATATAAGATTTGTAGCTTCATCTTGCTCCACTG
Found at i:19322554 original size:24 final size:24
Alignment explanation
Indices: 19322527--19322574 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
19322517 GAGCAACATG
19322527 TAGAAATCCTTTTAGTTTAATATT
1 TAGAAATCCTTTTAGTTTAATATT
19322551 TAGAAATCCTTTTAGTTTAATATT
1 TAGAAATCCTTTTAGTTTAATATT
19322575 GTTAGTCCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.08, T:0.50
Consensus pattern (24 bp):
TAGAAATCCTTTTAGTTTAATATT
Found at i:19324798 original size:53 final size:53
Alignment explanation
Indices: 19324698--19324842 Score: 132
Period size: 53 Copynumber: 2.7 Consensus size: 53
19324688 ATCCTTTTGA
* * * *
19324698 AACTTACCATTGCCATGTATTGACATGGTCTTACATGCTATCCTTGCCTTATG
1 AACTCACCAATGCCATGCATTGACATGGTCTTACATGCGATCCTTGCCTTATG
* * *
19324751 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAG
1 AACTCACCAATGCCATGCATTGACATGGTCTTACATGCGATCC-TTGCCTTAT-G
* ** * *
19324805 TAACTTATTAATGCCCTGTC-TTGATATGGTCTTACATG
1 -AACTCACCAATGCCATG-CATTGACATGGTCTTACATG
19324843 ATTTCCTACT
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
52 2 0.03
53 42 0.56
54 1 0.01
55 29 0.39
56 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (53 bp):
AACTCACCAATGCCATGCATTGACATGGTCTTACATGCGATCCTTGCCTTATG
Found at i:19331124 original size:27 final size:27
Alignment explanation
Indices: 19331086--19331144 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
19331076 CTCAAATCGA
19331086 AGGTGGTTCTTGACGACGGCTCTTAAC
1 AGGTGGTTCTTGACGACGGCTCTTAAC
*
19331113 AGGTGGTTCTTGACGGCGGCTCTTAAC
1 AGGTGGTTCTTGACGACGGCTCTTAAC
19331140 AGGTG
1 AGGTG
19331145 AAAATTTCAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.17, C:0.20, G:0.34, T:0.29
Consensus pattern (27 bp):
AGGTGGTTCTTGACGACGGCTCTTAAC
Found at i:19331643 original size:14 final size:14
Alignment explanation
Indices: 19331622--19331655 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
19331612 TTAATGAACT
19331622 TTTA-TTATTTTTA
1 TTTATTTATTTTTA
19331635 TTTATTTATTTTTA
1 TTTATTTATTTTTA
*
19331649 TCTATTT
1 TTTATTT
19331656 TTATCTAGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 4 0.21
14 15 0.79
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTATTTATTTTTA
Found at i:19341479 original size:30 final size:30
Alignment explanation
Indices: 19341423--19341480 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 30
19341413 TAGGTACTTC
*
19341423 CACACGGGTAATCCACACGCTCGTGTGTGA
1 CACACGGGTAATACACACGCTCGTGTGTGA
19341453 CACACGGGTAGACTACACAC-CT-GTGTGT
1 CACACGGGTA-A-TACACACGCTCGTGTGT
19341481 CATGGCCGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 16 0.64
31 3 0.12
32 6 0.24
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (30 bp):
CACACGGGTAATACACACGCTCGTGTGTGA
Found at i:19347229 original size:43 final size:42
Alignment explanation
Indices: 19347181--19347327 Score: 161
Period size: 43 Copynumber: 3.4 Consensus size: 42
19347171 TACGAGATGT
* *
19347181 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTG
1 GATTACATGTAAGACCATGTCTAGGACATTGGCATCGTATTG
* *
19347223 AGATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTTAATG
1 -GATTACATGTAAGACCATGTCTAGGACATTGGCATCG-TATTG
** * * *
19347267 GATTTTATGTAAGACCCTGTCCAGGACAGTGGCATCG-ATATG
1 GATTACATGTAAGACCATGTCTAGGACATTGGCATCGTAT-TG
*
19347309 TGATAACATGTAAGACCAT
1 -GATTACATGTAAGACCAT
19347328 ATATGGGATA
Statistics
Matches: 86, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
43 79 0.92
44 4 0.05
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (42 bp):
GATTACATGTAAGACCATGTCTAGGACATTGGCATCGTATTG
Found at i:19350893 original size:30 final size:30
Alignment explanation
Indices: 19350848--19350913 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
19350838 CAACAGAATT
* * ** *
19350848 TGATGGTTGCTGATTGTTTGTAACAAGATG
1 TGATGGCTGCCGATTGCGTGTAACAAGATA
19350878 TGATGGCTGCCGATTGCGTGTAACAAGATA
1 TGATGGCTGCCGATTGCGTGTAACAAGATA
19350908 TGATGG
1 TGATGG
19350914 TCATTGTTGT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.24, C:0.11, G:0.32, T:0.33
Consensus pattern (30 bp):
TGATGGCTGCCGATTGCGTGTAACAAGATA
Found at i:19351941 original size:19 final size:19
Alignment explanation
Indices: 19351919--19351958 Score: 57
Period size: 17 Copynumber: 2.2 Consensus size: 19
19351909 AATAATGTAG
*
19351919 ATATGTATA-AAATA-TTA
1 ATATATATATAAATACTTA
19351936 ATATATATATAAATACTTA
1 ATATATATATAAATACTTA
19351955 ATAT
1 ATAT
19351959 TTAAGAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 8 0.40
18 5 0.25
19 7 0.35
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (19 bp):
ATATATATATAAATACTTA
Found at i:19360449 original size:12 final size:13
Alignment explanation
Indices: 19360432--19360468 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
19360422 GAACCGGACA
19360432 CGAACCGAA-CTC
1 CGAACCGAAGCTC
19360444 CGAACC-AAGCTC
1 CGAACCGAAGCTC
*
19360456 CGAACCGTAGCTC
1 CGAACCGAAGCTC
19360469 TGATGCCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
11 2 0.09
12 15 0.68
13 5 0.23
ACGTcount: A:0.30, C:0.41, G:0.19, T:0.11
Consensus pattern (13 bp):
CGAACCGAAGCTC
Found at i:19362264 original size:3 final size:3
Alignment explanation
Indices: 19362256--19362287 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
19362246 ATGAAAGCAA
19362256 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
19362288 CAAAATAGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:19364364 original size:23 final size:24
Alignment explanation
Indices: 19364338--19364391 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 24
19364328 ATATTTGTTA
*
19364338 TTAAAACAT-TACTATAAATATT-T
1 TTAAAA-ATATACTAAAAATATTAT
* *
19364361 TTAATAATATATTAAAAATATTAT
1 TTAAAAATATACTAAAAATATTAT
19364385 TTAAAAA
1 TTAAAAA
19364392 CTAAATTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
22 2 0.08
23 16 0.64
24 7 0.28
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.43
Consensus pattern (24 bp):
TTAAAAATATACTAAAAATATTAT
Found at i:19367852 original size:96 final size:97
Alignment explanation
Indices: 19367727--19367936 Score: 248
Period size: 96 Copynumber: 2.2 Consensus size: 97
19367717 GTTTTTAAAT
* ** ** *
19367727 TTTAGGGTTTTAAGGAAAAAAAATTAAATAAATTAGGGTTTATTGTTTGTTAATTAAATTAATTA
1 TTTAGGGTTTTAAGG-AAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTA
*
19367792 CT-AATTTT-AAAAAATTAGATTATGGTTTAGTG
65 -TAAATTTTAAAAAAAATAGATTATGGTTTAGTG
* *
19367824 TTTATGGTTTTCAAGG-AAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTA
1 TTTAGGGTTTT-AAGGAAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTA
*
19367888 TAAATTTTAAAAAAAATAGATTA-GGATTTTAGGG
65 TAAATTTTAAAAAAAATAGATTATGG--TTTAGTG
*
19367922 TTTAGAGTTTTAAGG
1 TTTAGGGTTTTAAGG
19367937 TATTTAAGAA
Statistics
Matches: 96, Mismatches: 12, Indels: 10
0.81 0.10 0.08
Matches are distributed among these distances:
95 1 0.01
96 49 0.51
97 27 0.28
98 19 0.20
ACGTcount: A:0.40, C:0.02, G:0.18, T:0.40
Consensus pattern (97 bp):
TTTAGGGTTTTAAGGAAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTAT
AAATTTTAAAAAAAATAGATTATGGTTTAGTG
Found at i:19368238 original size:126 final size:126
Alignment explanation
Indices: 19368021--19368559 Score: 873
Period size: 126 Copynumber: 4.3 Consensus size: 126
19368011 AAAAGCTTCT
* *
19368021 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAAATTTGAGAAGACGTGTCTGCGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCACAA
*
19368086 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCC
* **
19368147 ACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTGTCTGTGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCACAA
* * * *
19368212 ATAGTGTAAAAAATGATTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTTCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCC
19368273 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCACAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCACAA
* * * *
19368338 TTAGTGGT-AAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAATTACTGGAAGAAACTCCC
66 ATAGT-GTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCC
* * * *
19368399 ACGTGGATGCTCTTTTGCTACAATGGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCATAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCACAA
*
19368464 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAATACTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCC
* *
19368525 ACGTGGACGCTCTTTTGCTACAGTGGTTTCTGAAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAA
19368560 TAACTTGGGC
Statistics
Matches: 382, Mismatches: 29, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
125 2 0.01
126 378 0.99
127 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (126 bp):
ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCACAA
ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCC
Found at i:19371906 original size:116 final size:116
Alignment explanation
Indices: 19371576--19372187 Score: 1023
Period size: 116 Copynumber: 5.3 Consensus size: 116
19371566 TTTATATTTT
* *** *
19371576 ATTACATGAAATAATATAAAAATATTCAAAATATTAATTTATTTAAAATAATTTTCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
** * *
19371641 AAAATATAAAAGTAAATTATTATTACTTTATTTAAAACAACCTTTTATATT
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
* * *
19371692 ATCACATGAAATAATATAAAAATATTCAAAATGTTG---TCTTTAAAATAATTTCCATTTCATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
19371754 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
19371805 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
19371870 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
*
19371921 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAGTTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
* * *
19371986 AAAATATAAAATTAAATTATAATTACTTTATTTAAAACAACTTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
19372037 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
*
19372102 AAAATATAAAAGTAAATTACAGTTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
* * *
19372153 ATTATATAAAATAATATAAAAAGATTCAAAATGTT
1 ATTACATGAAATAATATAAAAATATTCAAAATGTT
19372188 TGTACAAATA
Statistics
Matches: 468, Mismatches: 25, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
113 105 0.22
116 363 0.78
ACGTcount: A:0.47, C:0.09, G:0.03, T:0.40
Consensus pattern (116 bp):
ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
Found at i:19374422 original size:22 final size:22
Alignment explanation
Indices: 19374397--19374459 Score: 67
Period size: 20 Copynumber: 3.0 Consensus size: 22
19374387 TTTTTGAAAA
**
19374397 AATTAAAGAGAGTTTTGAGAGG
1 AATTAAAGAGAAATTTGAGAGG
*
19374419 AATTTAAGAGAAATTTGAGA-G
1 AATTAAAGAGAAATTTGAGAGG
**
19374440 -ATTTGAGAGAAATTTGAGAG
1 AATTAAAGAGAAATTTGAGAG
19374460 AATATTGAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
20 18 0.50
21 1 0.03
22 17 0.47
ACGTcount: A:0.43, C:0.00, G:0.29, T:0.29
Consensus pattern (22 bp):
AATTAAAGAGAAATTTGAGAGG
Found at i:19374443 original size:20 final size:20
Alignment explanation
Indices: 19374410--19374460 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
19374400 TAAAGAGAGT
19374410 TTTGAGAGGAATTTAAGAGAAA
1 TTTGAGA-G-ATTTAAGAGAAA
*
19374432 TTTGAGAGATTTGAGAGAAA
1 TTTGAGAGATTTAAGAGAAA
19374452 TTTGAGAGA
1 TTTGAGAGA
19374461 ATATTGAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
20 20 0.71
21 1 0.04
22 7 0.25
ACGTcount: A:0.41, C:0.00, G:0.29, T:0.29
Consensus pattern (20 bp):
TTTGAGAGATTTAAGAGAAA
Found at i:19374473 original size:31 final size:31
Alignment explanation
Indices: 19374410--19374473 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
19374400 TAAAGAGAGT
* *
19374410 TTTGAGAGGAATTTAAGAGAAATTTGAGAGA
1 TTTGAGAGAAATTTAAGAGAAATTTGAAAGA
*
19374441 TTTGAGAGAAATTTGAGAG-AATATTGAAAGA
1 TTTGAGAGAAATTTAAGAGAAAT-TTGAAAGA
19374472 TT
1 TT
19374474 GAAGATTGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 3 0.10
31 26 0.90
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.31
Consensus pattern (31 bp):
TTTGAGAGAAATTTAAGAGAAATTTGAAAGA
Found at i:19382349 original size:16 final size:16
Alignment explanation
Indices: 19382328--19382360 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
19382318 GCATAGTAAG
*
19382328 CAAAGTGCGAGCCTGT
1 CAAAGTGAGAGCCTGT
19382344 CAAAGTGAGAGCCTGT
1 CAAAGTGAGAGCCTGT
19382360 C
1 C
19382361 GAATTGCAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.24, G:0.30, T:0.18
Consensus pattern (16 bp):
CAAAGTGAGAGCCTGT
Found at i:19384337 original size:8 final size:8
Alignment explanation
Indices: 19384300--19384336 Score: 60
Period size: 8 Copynumber: 4.9 Consensus size: 8
19384290 AATTTTAGGG
19384300 TTATTTTA
1 TTATTTTA
19384308 TTATTTTA
1 TTATTTTA
19384316 TTATTTTA
1 TTATTTTA
19384324 TT-TTTT-
1 TTATTTTA
19384330 TTATTTT
1 TTATTTT
19384337 TAAATATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 2 0.07
7 8 0.29
8 18 0.64
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (8 bp):
TTATTTTA
Found at i:19386736 original size:28 final size:28
Alignment explanation
Indices: 19386675--19386746 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 28
19386665 TTAAGAAATC
* *
19386675 TGGTGCTTTTCTATTCTGATAAGCACTA
1 TGGTGTTTTTCTGTTCTGATAAGCACTA
**
19386703 CAGTGTTTTTCTGTTCTGATAAGCAC-A
1 TGGTGTTTTTCTGTTCTGATAAGCACTA
*
19386730 TTGGTGTTGTTCTGTTC
1 -TGGTGTTTTTCTGTTC
19386747 CGTTAACACA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
27 1 0.03
28 35 0.97
ACGTcount: A:0.17, C:0.17, G:0.21, T:0.46
Consensus pattern (28 bp):
TGGTGTTTTTCTGTTCTGATAAGCACTA
Found at i:19386763 original size:28 final size:28
Alignment explanation
Indices: 19386683--19386763 Score: 67
Period size: 28 Copynumber: 2.9 Consensus size: 28
19386673 TCTGGTGCTT
* * * *
19386683 TTCTATTCTGATAAGCAC-TACAGTGTTT
1 TTCTGTTCCGATAAGCACAT-CGGTGTTG
* *
19386711 TTCTGTTCTGATAAGCACATTGGTGTTG
1 TTCTGTTCCGATAAGCACATCGGTGTTG
*
19386739 TTCTGTTCCGTTAA-CACACTCGGTG
1 TTCTGTTCCGATAAGCACA-TCGGTG
19386764 CCCTTTGTAT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
27 4 0.09
28 39 0.89
29 1 0.02
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.41
Consensus pattern (28 bp):
TTCTGTTCCGATAAGCACATCGGTGTTG
Found at i:19391614 original size:21 final size:21
Alignment explanation
Indices: 19391588--19391628 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
19391578 AGACGAGCGA
* *
19391588 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
19391609 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
19391629 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:19393532 original size:27 final size:25
Alignment explanation
Indices: 19393502--19393559 Score: 66
Period size: 24 Copynumber: 2.3 Consensus size: 25
19393492 TCAAATCTTC
*
19393502 AAGGTGGAGATTGTTGAAAAGTCAAA
1 AAGGTGGA-AGTGTTGAAAAGTCAAA
19393528 TAAGGT--AAGTGTTGAAAAGTCAAA
1 -AAGGTGGAAGTGTTGAAAAGTCAAA
19393552 AATGGTGG
1 AA-GGTGG
19393560 GAGGTGCAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
23 2 0.07
24 19 0.70
25 1 0.04
27 5 0.19
ACGTcount: A:0.41, C:0.03, G:0.31, T:0.24
Consensus pattern (25 bp):
AAGGTGGAAGTGTTGAAAAGTCAAA
Found at i:19395767 original size:29 final size:27
Alignment explanation
Indices: 19395750--19395819 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
19395740 ATATTAAGTC
19395750 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
19395777 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
19395805 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
19395820 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:19395813 original size:28 final size:28
Alignment explanation
Indices: 19395750--19395847 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
19395740 ATATTAAGTC
*
19395750 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
19395777 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
19395805 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
19395834 CGCACACTTAGTGC
1 CGCACACTTAGTGC
19395848 CAACCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:19402980 original size:27 final size:26
Alignment explanation
Indices: 19402963--19403032 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
19402953 ATATTAAGTC
19402963 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
19402990 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
19403018 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
19403033 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:19403026 original size:28 final size:28
Alignment explanation
Indices: 19402963--19403060 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
19402953 ATATTAAGTC
*
19402963 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
19402990 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
19403018 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
19403047 CGCACACTTAGTGC
1 CGCACACTTAGTGC
19403061 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:19405070 original size:41 final size:40
Alignment explanation
Indices: 19404995--19405243 Score: 263
Period size: 41 Copynumber: 6.1 Consensus size: 40
19404985 CAAAAATTGT
* ***
19404995 AAAACACAGAGCAATAACGGCGTTTTACCAAAAACGCCGCTA
1 AAAAC-CAGAGCAATAGCGGCGTTTT-TGTAAAACGCCGCTA
19405037 AAAA-CAGAGCAATAGCGGCGTTTTTTGTTAAAACGCCGCTA
1 AAAACCAGAGCAATAGCGGCG-TTTTTG-TAAAACGCCGCTA
* **
19405078 AAAA-CAG-GTCAATAGCGGCACTTTCAGTAAAACGCCGCTA
1 AAAACCAGAG-CAATAGCGGC-GTTTTTGTAAAACGCCGCTA
* *
19405118 AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
1 AAAACCAGAGCAATAGCGGCG-TTTTTGTAAAACGCCGCTA
*
19405159 AAAACCAGAG-AATTAGCGGCGCTTTCTGTAAAACGCCGCTA
1 AAAACCAGAGCAA-TAGCGGCG-TTTTTGTAAAACGCCGCTA
* * *
19405200 AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAATGCCGCTA
1 AAAACCAGAGCAATAGCGGCG-TTTTTGTAAAACGCCGCTA
19405241 AAA
1 AAA
19405244 GTCATATAAC
Statistics
Matches: 180, Mismatches: 18, Indels: 19
0.83 0.08 0.09
Matches are distributed among these distances:
40 34 0.19
41 140 0.78
42 6 0.03
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.19
Consensus pattern (40 bp):
AAAACCAGAGCAATAGCGGCGTTTTTGTAAAACGCCGCTA
Found at i:19405190 original size:82 final size:80
Alignment explanation
Indices: 19405025--19405243 Score: 325
Period size: 82 Copynumber: 2.7 Consensus size: 80
19405015 CGTTTTACCA
* * *
19405025 AAAACGCCGCTAAAAA-CAGAGCAATAGCGGCGTTTTTTGTTAAAACGCCGCTAAAAACAGGTCA
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCG-CTTTTGGTAAAACGCCGCTAAAAACAGG-CA
19405089 ATAGCGGCACTTTCAGT
64 ATAGCGGCACTTTCAGT
19405106 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACCAGAG-A
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAA-CAG-GCA
* *
19405170 ATTAGCGGCGCTTTCTGT
64 A-TAGCGGCACTTTCAGT
*
19405188 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAATGCCGCTAAAA
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAA
19405244 GTCATATAAC
Statistics
Matches: 128, Mismatches: 6, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
81 40 0.31
82 87 0.68
83 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (80 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACAGGCAAT
AGCGGCACTTTCAGT
Found at i:19405522 original size:14 final size:15
Alignment explanation
Indices: 19405505--19405541 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
19405495 TAATATTTCA
19405505 GGTTTAAGG-TCTAT
1 GGTTTAAGGTTCTAT
*
19405519 GGTTTAGGGTTCTAT
1 GGTTTAAGGTTCTAT
19405534 GGTTTAAG
1 GGTTTAAG
19405542 TTTAATGGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.19, C:0.05, G:0.32, T:0.43
Consensus pattern (15 bp):
GGTTTAAGGTTCTAT
Found at i:19410153 original size:6 final size:6
Alignment explanation
Indices: 19410085--19410167 Score: 60
Period size: 6 Copynumber: 13.5 Consensus size: 6
19410075 ACTTGCTGTA
* * * * * *
19410085 TTTTAT TTATAT CTTTAT ATTTAA TCTAAT TTTTAT TATTTA- TTTTAGT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT T-TTTAT TTTTA-T
* *
19410134 TTTGAT TCTATAT TTTTAT TTTTAT TTTTAT TTT
1 TTTTAT T-TTTAT TTTTAT TTTTAT TTTTAT TTT
19410168 AATATTTAAT
Statistics
Matches: 58, Mismatches: 15, Indels: 8
0.72 0.19 0.10
Matches are distributed among these distances:
5 4 0.07
6 42 0.72
7 12 0.21
ACGTcount: A:0.23, C:0.04, G:0.02, T:0.71
Consensus pattern (6 bp):
TTTTAT
Found at i:19410513 original size:42 final size:43
Alignment explanation
Indices: 19410436--19410534 Score: 155
Period size: 42 Copynumber: 2.3 Consensus size: 43
19410426 ATTTCATGAC
* * *
19410436 CTTTAGCGGCGTTTGGGGAAAAAGCGCCGCTAAAGGTCGTGGT
1 CTTTAGCGGCGTTTGGCGAAAAAACGCCGCTAAAGGTCCTGGT
*
19410479 CTTTAGCGGCGTTT-GCTAAAAAACGCCGCTAAAGGTCCTGGT
1 CTTTAGCGGCGTTTGGCGAAAAAACGCCGCTAAAGGTCCTGGT
19410521 CTTTAGCGGCGTTT
1 CTTTAGCGGCGTTT
19410535 TTTTACAAAC
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
42 38 0.73
43 14 0.27
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.27
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGGCGAAAAAACGCCGCTAAAGGTCCTGGT
Found at i:19410550 original size:42 final size:42
Alignment explanation
Indices: 19410436--19410554 Score: 139
Period size: 42 Copynumber: 2.8 Consensus size: 42
19410426 ATTTCATGAC
** * * *
19410436 CTTTAGCGGCGTTTGGGGAAAAAGCGCCGCTAAAGGTCGTGGT
1 CTTTAGCGGCGTTT-GCTAAAAAACACCGCTAAAGGTCCTGGT
*
19410479 CTTTAGCGGCGTTTGCTAAAAAACGCCGCTAAAGGTCCTGGT
1 CTTTAGCGGCGTTTGCTAAAAAACACCGCTAAAGGTCCTGGT
** * *
19410521 CTTTAGCGGCGTTTTTTTACAAACACCGCTAAAG
1 CTTTAGCGGCGTTTGCTAAAAAACACCGCTAAAG
19410555 ACCATGACCT
Statistics
Matches: 67, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
42 53 0.79
43 14 0.21
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (42 bp):
CTTTAGCGGCGTTTGCTAAAAAACACCGCTAAAGGTCCTGGT
Found at i:19412595 original size:15 final size:15
Alignment explanation
Indices: 19412566--19412594 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
19412556 ACAAATTTTC
19412566 TAAAAAATGATAAAA
1 TAAAAAATGATAAAA
19412581 TAAAAAAT-ATAAAA
1 TAAAAAATGATAAAA
19412595 AATTAAAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (15 bp):
TAAAAAATGATAAAA
Found at i:19418655 original size:40 final size:40
Alignment explanation
Indices: 19418611--19418742 Score: 183
Period size: 40 Copynumber: 3.3 Consensus size: 40
19418601 AAAATATTAT
** **
19418611 TGAATGCACATATGTGCCATTGTTTGTACTTCGGTACTTC
1 TGAATGCACATATGTGCCCCTGTTTGTACTTCGGTACCCC
* *
19418651 TGAATGCACATATGTGCCCCTGATTATACTTCGGTACCCC
1 TGAATGCACATATGTGCCCCTGTTTGTACTTCGGTACCCC
* * *
19418691 TGAATACACATACGTGCCCCTATTTGTACTTCGGTACCCC
1 TGAATGCACATATGTGCCCCTGTTTGTACTTCGGTACCCC
19418731 TGAATGCACATA
1 TGAATGCACATA
19418743 CATGCTTTGA
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 80 1.00
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (40 bp):
TGAATGCACATATGTGCCCCTGTTTGTACTTCGGTACCCC
Found at i:19418690 original size:20 final size:20
Alignment explanation
Indices: 19418667--19418733 Score: 57
Period size: 20 Copynumber: 3.4 Consensus size: 20
19418657 CACATATGTG
19418667 CCCCTGATTATACTTCGGTA
1 CCCCTGATTATACTTCGGTA
* * * *
19418687 CCCCTGAATACACATAC-GTG
1 CCCCTGATTATAC-TTCGGTA
*
19418707 CCCCT-ATTTGTACTTCGGTA
1 CCCCTGA-TTATACTTCGGTA
19418727 CCCCTGA
1 CCCCTGA
19418734 ATGCACATAC
Statistics
Matches: 34, Mismatches: 9, Indels: 7
0.68 0.18 0.14
Matches are distributed among these distances:
19 3 0.09
20 28 0.82
21 3 0.09
ACGTcount: A:0.21, C:0.34, G:0.15, T:0.30
Consensus pattern (20 bp):
CCCCTGATTATACTTCGGTA
Found at i:19419450 original size:17 final size:18
Alignment explanation
Indices: 19419417--19419451 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
19419407 GTAAAAATAT
*
19419417 ATAACCCAATTAGCCCAA
1 ATAACCCAATTACCCCAA
19419435 ATAACCC-ATTACCCCAA
1 ATAACCCAATTACCCCAA
19419452 GCCCAAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.43, C:0.37, G:0.03, T:0.17
Consensus pattern (18 bp):
ATAACCCAATTACCCCAA
Found at i:19432603 original size:22 final size:23
Alignment explanation
Indices: 19432578--19432631 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 23
19432568 AGGTTTAATT
*
19432578 GATTTAGGGTTATTG-TTTTTAG
1 GATTTAGGGTTAGTGTTTTTTAG
19432600 GATTTAGGGTTAGTGTTTTTTAG
1 GATTTAGGGTTAGTGTTTTTTAG
19432623 G--TTAGGGTT
1 GATTTAGGGTT
19432632 TTTAGGGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 8 0.27
22 14 0.47
23 8 0.27
ACGTcount: A:0.17, C:0.00, G:0.31, T:0.52
Consensus pattern (23 bp):
GATTTAGGGTTAGTGTTTTTTAG
Found at i:19432643 original size:16 final size:16
Alignment explanation
Indices: 19432602--19432640 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
19432592 GTTTTTAGGA
*
19432602 TTTAGGGTTAGTGTTT
1 TTTAGGGTTAGTGGTT
19432618 TTTA-GGTTAG-GGTT
1 TTTAGGGTTAGTGGTT
19432632 TTTAGGGTT
1 TTTAGGGTT
19432641 TAGAATTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 7 0.33
15 10 0.48
16 4 0.19
ACGTcount: A:0.13, C:0.00, G:0.33, T:0.54
Consensus pattern (16 bp):
TTTAGGGTTAGTGGTT
Found at i:19432757 original size:19 final size:19
Alignment explanation
Indices: 19432736--19432804 Score: 92
Period size: 19 Copynumber: 3.8 Consensus size: 19
19432726 ATTTAGGGTA
19432736 TTAGGGTTAATTGATTTAA-
1 TTAGGGTTAATTGA-TTAAC
19432755 TTAGGG---ATTGATTAAC
1 TTAGGGTTAATTGATTAAC
*
19432771 TTAGGGTTAATTGATTAAT
1 TTAGGGTTAATTGATTAAC
19432790 TTAGGGTTAATTGAT
1 TTAGGGTTAATTGAT
19432805 ACATAATAGT
Statistics
Matches: 45, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
15 4 0.09
16 11 0.24
19 30 0.67
ACGTcount: A:0.30, C:0.01, G:0.23, T:0.45
Consensus pattern (19 bp):
TTAGGGTTAATTGATTAAC
Found at i:19437118 original size:18 final size:18
Alignment explanation
Indices: 19437097--19437131 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
19437087 AAAGGAAACG
19437097 TATAAGGGT-TAGGATACA
1 TATAA-GGTCTAGGATACA
19437115 TATAAGGTCTAGGATAC
1 TATAAGGTCTAGGATAC
19437132 GCACCTGGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.37, C:0.09, G:0.26, T:0.29
Consensus pattern (18 bp):
TATAAGGTCTAGGATACA
Found at i:19441072 original size:7 final size:7
Alignment explanation
Indices: 19441062--19441094 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
19441052 CATAATACAT
19441062 AATACTA
1 AATACTA
19441069 AATACTA
1 AATACTA
*
19441076 AATATTA
1 AATACTA
19441083 AATACTA
1 AATACTA
19441090 AATAC
1 AATAC
19441095 GAAACGACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.30
Consensus pattern (7 bp):
AATACTA
Found at i:19442075 original size:48 final size:48
Alignment explanation
Indices: 19442023--19442194 Score: 249
Period size: 48 Copynumber: 3.6 Consensus size: 48
19442013 CAAACATCAT
*
19442023 AAAATATCAAATAGTATTGCAGATTTAATTAAATTTGCATAAATTAAA
1 AAAATATCAAATAGTATTGCAAATTTAATTAAATTTGCATAAATTAAA
* * *
19442071 AAAATATCGAATAGTATTG-AAATTTTAATTATAA-TTGCATAAATGAAT
1 AAAATATCAAATAGTATTGCAAA-TTTAATTA-AATTTGCATAAATTAAA
*
19442119 AAAATATCAAATAGTATTGCAGATTTAATTAAATTTGCATAAATTAAA
1 AAAATATCAAATAGTATTGCAAATTTAATTAAATTTGCATAAATTAAA
* *
19442167 AAAATATCGAATAGTATTGAAAATTTAA
1 AAAATATCAAATAGTATTGCAAATTTAA
19442195 AATTATCACT
Statistics
Matches: 109, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
47 4 0.04
48 101 0.93
49 4 0.04
ACGTcount: A:0.50, C:0.05, G:0.09, T:0.35
Consensus pattern (48 bp):
AAAATATCAAATAGTATTGCAAATTTAATTAAATTTGCATAAATTAAA
Found at i:19442122 original size:96 final size:96
Alignment explanation
Indices: 19442021--19442194 Score: 339
Period size: 96 Copynumber: 1.8 Consensus size: 96
19442011 TGCAAACATC
19442021 ATAAAATATCAAATAGTATTGCAGATTTAATTAAATTTGCATAAATTAAAAAAATATCGAATAGT
1 ATAAAATATCAAATAGTATTGCAGATTTAATTAAATTTGCATAAATTAAAAAAATATCGAATAGT
*
19442086 ATTGAAATTTTAATTATAATTGCATAAATGA
66 ATTGAAAATTTAATTATAATTGCATAAATGA
19442117 ATAAAATATCAAATAGTATTGCAGATTTAATTAAATTTGCATAAATTAAAAAAATATCGAATAGT
1 ATAAAATATCAAATAGTATTGCAGATTTAATTAAATTTGCATAAATTAAAAAAATATCGAATAGT
19442182 ATTGAAAATTTAA
66 ATTGAAAATTTAA
19442195 AATTATCACT
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 77 1.00
ACGTcount: A:0.50, C:0.05, G:0.09, T:0.36
Consensus pattern (96 bp):
ATAAAATATCAAATAGTATTGCAGATTTAATTAAATTTGCATAAATTAAAAAAATATCGAATAGT
ATTGAAAATTTAATTATAATTGCATAAATGA
Found at i:19442347 original size:11 final size:11
Alignment explanation
Indices: 19442328--19442391 Score: 58
Period size: 11 Copynumber: 5.9 Consensus size: 11
19442318 TTTTAAACAA
*
19442328 AGAAATTTGAT
1 AGAATTTTGAT
19442339 AGAATTTTGAT
1 AGAATTTTGAT
*
19442350 AGAATTTTGAG
1 AGAATTTTGAT
* **
19442361 AAAATTTCAAT
1 AGAATTTTGAT
*
19442372 -GAAATTTGAT
1 AGAATTTTGAT
*
19442382 AGATTTTTGA
1 AGAATTTTGA
19442392 AGGGAATATT
Statistics
Matches: 40, Mismatches: 12, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
10 6 0.15
11 34 0.85
ACGTcount: A:0.41, C:0.02, G:0.17, T:0.41
Consensus pattern (11 bp):
AGAATTTTGAT
Found at i:19446336 original size:26 final size:24
Alignment explanation
Indices: 19446306--19446408 Score: 97
Period size: 24 Copynumber: 4.2 Consensus size: 24
19446296 GGACTCACCA
19446306 CAGCTCGTATA-AGCTTATCGATATAT
1 CAGCTCGTA-AGAGCTT-TCGAT-TAT
*
19446332 CAGCTCGTAAGAGCTTTCTATTAT
1 CAGCTCGTAAGAGCTTTCGATTAT
* *
19446356 CAGCTCGTAAGAG-TTTACTATTTT
1 CAGCTCGTAAGAGCTTT-CGATTAT
*
19446380 CAGCTCGTCAGAGCTTATCG-TT-T
1 CAGCTCGTAAGAGCTT-TCGATTAT
19446403 CAGCTC
1 CAGCTC
19446409 AATAGAGCTT
Statistics
Matches: 69, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
23 10 0.14
24 36 0.52
25 8 0.12
26 15 0.22
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.36
Consensus pattern (24 bp):
CAGCTCGTAAGAGCTTTCGATTAT
Found at i:19446356 original size:24 final size:24
Alignment explanation
Indices: 19446306--19446395 Score: 103
Period size: 24 Copynumber: 3.7 Consensus size: 24
19446296 GGACTCACCA
*
19446306 CAGCTCGTATA-AGCTTATCGATATAT
1 CAGCTCGTA-AGAGCTT-TCTAT-TAT
19446332 CAGCTCGTAAGAGCTTTCTATTAT
1 CAGCTCGTAAGAGCTTTCTATTAT
*
19446356 CAGCTCGTAAGAG-TTTACTATTTT
1 CAGCTCGTAAGAGCTTT-CTATTAT
*
19446380 CAGCTCGTCAGAGCTT
1 CAGCTCGTAAGAGCTT
19446396 ATCGTTTCAG
Statistics
Matches: 58, Mismatches: 3, Indels: 7
0.85 0.04 0.10
Matches are distributed among these distances:
23 3 0.05
24 34 0.59
25 7 0.12
26 14 0.24
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.36
Consensus pattern (24 bp):
CAGCTCGTAAGAGCTTTCTATTAT
Found at i:19446415 original size:23 final size:25
Alignment explanation
Indices: 19446389--19446434 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
19446379 TCAGCTCGTC
19446389 AGAGCTTATCGT-T-TCAGCTCAAT
1 AGAGCTTATCGTATATCAGCTCAAT
*
19446412 AGAGCTTATTGTATATCAGCTCA
1 AGAGCTTATCGTATATCAGCTCA
19446435 GGAGGAGCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 11 0.55
24 1 0.05
25 8 0.40
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (25 bp):
AGAGCTTATCGTATATCAGCTCAAT
Found at i:19460847 original size:21 final size:21
Alignment explanation
Indices: 19460823--19460863 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
19460813 ATTTGCTCAA
* *
19460823 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
19460844 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
19460864 TCGCTTGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:19464265 original size:16 final size:17
Alignment explanation
Indices: 19464246--19464279 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
19464236 TATTTAATTG
19464246 TTAAAAATGTTAA-AAT
1 TTAAAAATGTTAATAAT
*
19464262 TTAATAATGTTAATAAT
1 TTAAAAATGTTAATAAT
19464279 T
1 T
19464280 ATATTTGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
TTAAAAATGTTAATAAT
Found at i:19464805 original size:22 final size:22
Alignment explanation
Indices: 19464780--19464823 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
19464770 TAGTCATATA
19464780 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
19464802 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
19464824 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:19464874 original size:13 final size:13
Alignment explanation
Indices: 19464858--19464882 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19464848 AATTATAAAT
19464858 TTTTAAATAATAA
1 TTTTAAATAATAA
19464871 TTTTAAATAATA
1 TTTTAAATAATA
19464883 TTATTCACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TTTTAAATAATAA
Found at i:19465374 original size:20 final size:20
Alignment explanation
Indices: 19465349--19465452 Score: 82
Period size: 20 Copynumber: 5.2 Consensus size: 20
19465339 TATCAAAATA
19465349 TCTAAGGATTTACCAATATT
1 TCTAAGGATTTACCAATATT
* * * *
19465369 TTTAAGTATATACCAATATA
1 TCTAAGGATTTACCAATATT
* *
19465389 TCTAACGATTTATCAATATT
1 TCTAAGGATTTACCAATATT
* * * *
19465409 TCTAAGAACTAACCAATATA
1 TCTAAGGATTTACCAATATT
** * *
19465429 TCTAACAATTTGCCAAAATT
1 TCTAAGGATTTACCAATATT
19465449 TCTA
1 TCTA
19465453 CATATTTTTC
Statistics
Matches: 62, Mismatches: 22, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 62 1.00
ACGTcount: A:0.40, C:0.16, G:0.06, T:0.38
Consensus pattern (20 bp):
TCTAAGGATTTACCAATATT
Found at i:19465399 original size:40 final size:40
Alignment explanation
Indices: 19465346--19465452 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
19465336 CTTTATCAAA
* * *
19465346 ATATCTAAGGATTTACCAATATTTTTAAGTA-TATACCAAT
1 ATATCTAACGATTTACCAATATTTCTAAGAACTA-ACCAAT
*
19465386 ATATCTAACGATTTATCAATATTTCTAAGAACTAACCAAT
1 ATATCTAACGATTTACCAATATTTCTAAGAACTAACCAAT
* * *
19465426 ATATCTAACAATTTGCCAAAATTTCTA
1 ATATCTAACGATTTACCAATATTTCTA
19465453 CATATTTTTC
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
40 56 0.97
41 2 0.03
ACGTcount: A:0.41, C:0.16, G:0.06, T:0.37
Consensus pattern (40 bp):
ATATCTAACGATTTACCAATATTTCTAAGAACTAACCAAT
Found at i:19465550 original size:20 final size:20
Alignment explanation
Indices: 19465519--19465716 Score: 132
Period size: 20 Copynumber: 9.9 Consensus size: 20
19465509 TATCAAGTCT
19465519 TAACAA-TTACCAAAATTTC
1 TAACAATTTACCAAAATTTC
** * *
19465538 TATGATTTTACCAAAATATC
1 TAACAATTTACCAAAATTTC
19465558 TAACAATTTACCAAAATTTC
1 TAACAATTTACCAAAATTTC
** * *
19465578 TAAGGATTTACCAATATATC
1 TAACAATTTACCAAAATTTC
* * * *
19465598 TAATAAATTACCAATATTTT
1 TAACAATTTACCAAAATTTC
* * *
19465618 TGA-AGTTGTACCAAAATATC
1 TAACAATT-TACCAAAATTTC
19465638 TAACAATTT-CACAAAATTTC
1 TAACAATTTAC-CAAAATTTC
* * *
19465658 TATCGATTTACCAAGATTTC
1 TAACAATTTACCAAAATTTC
** * ** *
19465678 TAAGGATTTATCATTATATC
1 TAACAATTTACCAAAATTTC
*
19465698 TAACAAATTACCAAAATTT
1 TAACAATTTACCAAAATTT
19465717 GTTGGAGATC
Statistics
Matches: 132, Mismatches: 42, Indels: 9
0.72 0.23 0.05
Matches are distributed among these distances:
19 6 0.05
20 122 0.92
21 4 0.03
ACGTcount: A:0.42, C:0.16, G:0.05, T:0.37
Consensus pattern (20 bp):
TAACAATTTACCAAAATTTC
Found at i:19465574 original size:40 final size:39
Alignment explanation
Indices: 19465519--19465680 Score: 170
Period size: 40 Copynumber: 4.1 Consensus size: 39
19465509 TATCAAGTCT
19465519 TAACAA-TTACCAAAATTTCTATGATTTTACCAAAATATC
1 TAACAATTTACCAAAATTTCTATGA-TTTACCAAAATATC
* *
19465558 TAACAATTTACCAAAATTTCTAAGGATTTACCAATATATC
1 TAACAATTTACCAAAATTTCT-ATGATTTACCAAAATATC
* * *
19465598 TAATAAATTACCAATATTT-T-TGAAGTTGTACCAAAATATC
1 TAACAATTTACCAAAATTTCTATG-A-TT-TACCAAAATATC
* *
19465638 TAACAATTT-CACAAAATTTCTATCGATTTACCAAGATTTC
1 TAACAATTTAC-CAAAATTTCTAT-GATTTACCAAAATATC
19465678 TAA
1 TAA
19465681 GGATTTATCA
Statistics
Matches: 102, Mismatches: 12, Indels: 17
0.78 0.09 0.13
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
39 10 0.10
40 81 0.79
41 6 0.06
42 2 0.02
43 1 0.01
ACGTcount: A:0.42, C:0.17, G:0.05, T:0.36
Consensus pattern (39 bp):
TAACAATTTACCAAAATTTCTATGATTTACCAAAATATC
Found at i:19465710 original size:80 final size:79
Alignment explanation
Indices: 19465545--19465714 Score: 180
Period size: 80 Copynumber: 2.1 Consensus size: 79
19465535 TTCTATGATT
* * *
19465545 TTACCAAAATATCTAACAATTTACCAAAATTTCTAAGGATTTACCAATATATCTAATAAATTACC
1 TTACCAAAATATCTAACAATTTACCAAAATTTCTAACGATTTACCAAGATATCTAAGAAATTACC
* * * **
19465610 AATATTTTTGAAGT
66 AATATATCTAAAAA
* * * *
19465624 TGTACCAAAATATCTAACAATTT-CACAAAATTTCTATCGATTTACCAAGATTTCTAAGGATTTA
1 T-TACCAAAATATCTAACAATTTAC-CAAAATTTCTAACGATTTACCAAGATATCTAAGAAATTA
* *
19465688 TCATTATATCTAACAAA
64 CCAATATATCTAA-AAA
19465705 TTACCAAAAT
1 TTACCAAAAT
19465715 TTGTTGGAGA
Statistics
Matches: 74, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
79 2 0.03
80 70 0.95
81 2 0.03
ACGTcount: A:0.42, C:0.16, G:0.05, T:0.36
Consensus pattern (79 bp):
TTACCAAAATATCTAACAATTTACCAAAATTTCTAACGATTTACCAAGATATCTAAGAAATTACC
AATATATCTAAAAA
Found at i:19466215 original size:25 final size:25
Alignment explanation
Indices: 19466160--19466215 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 25
19466150 AAATATCCCT
* *
19466160 AGAATAATCAGAGTCTAATTGGGAA
1 AGAATAATCAGAGTATAACTGGGAA
* *
19466185 AAAATAA-CATAGTATAACTGGGAGA
1 AGAATAATCAGAGTATAACTGGGA-A
19466210 AGAATA
1 AGAATA
19466216 CGAGGCTCAC
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
24 13 0.52
25 12 0.48
ACGTcount: A:0.50, C:0.07, G:0.21, T:0.21
Consensus pattern (25 bp):
AGAATAATCAGAGTATAACTGGGAA
Found at i:19467595 original size:48 final size:48
Alignment explanation
Indices: 19467536--19467631 Score: 149
Period size: 48 Copynumber: 2.0 Consensus size: 48
19467526 TCTCTAAATT
*
19467536 AGACACGTGCCTAA-ATTTTGACACGACACCACCTTCAAACGGATTATC
1 AGACACATGCCTAACA-TTTGACACGACACCACCTTCAAACGGATTATC
* *
19467584 AGACACATGCCTAACATTTGACATGACACCACCTTCAACCGGATTATC
1 AGACACATGCCTAACATTTGACACGACACCACCTTCAAACGGATTATC
19467632 TTAAGAGTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
48 43 0.98
49 1 0.02
ACGTcount: A:0.33, C:0.30, G:0.14, T:0.23
Consensus pattern (48 bp):
AGACACATGCCTAACATTTGACACGACACCACCTTCAAACGGATTATC
Found at i:19468256 original size:25 final size:26
Alignment explanation
Indices: 19468201--19468256 Score: 64
Period size: 24 Copynumber: 2.2 Consensus size: 26
19468191 AAATATCCCT
*
19468201 AGAATAATCAGAGTCTAATTGAGAAA
1 AGAATAATCAGAGTCTAACTGAGAAA
*
19468227 A-AATAAT-AGAGAT-TAACTGGGAAA
1 AGAATAATCAGAG-TCTAACTGAGAAA
19468251 AGAATA
1 AGAATA
19468257 CGAGGCACAC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 14 0.54
25 11 0.42
26 1 0.04
ACGTcount: A:0.54, C:0.05, G:0.20, T:0.21
Consensus pattern (26 bp):
AGAATAATCAGAGTCTAACTGAGAAA
Found at i:19470273 original size:20 final size:21
Alignment explanation
Indices: 19470242--19470280 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
19470232 ATATCCCTAG
19470242 AATAATCAGAGTCTAATTGGA
1 AATAATCAGAGTCTAATTGGA
*
19470263 AATAA-CAGAGTTTAATTG
1 AATAATCAGAGTCTAATTG
19470281 AGAGAAGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.44, C:0.08, G:0.18, T:0.31
Consensus pattern (21 bp):
AATAATCAGAGTCTAATTGGA
Found at i:19470376 original size:39 final size:40
Alignment explanation
Indices: 19470306--19470392 Score: 108
Period size: 39 Copynumber: 2.2 Consensus size: 40
19470296 GCACACCTCA
*
19470306 CAAAATTGTTAAGGTTTTACCAAAACTTCTAAC-AATTTAC
1 CAAAATTTTTAAGGTTTTACCAAAACTTCTAACGAA-TTAC
* *
19470346 CAAAATTTTTAATG-TTTACGAAAA-TATCTAACGAATTAC
1 CAAAATTTTTAAGGTTTTACCAAAACT-TCTAACGAATTAC
19470385 CAAAATTT
1 CAAAATTT
19470393 CTATCGATTT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
38 1 0.02
39 27 0.64
40 14 0.33
ACGTcount: A:0.43, C:0.15, G:0.07, T:0.36
Consensus pattern (40 bp):
CAAAATTTTTAAGGTTTTACCAAAACTTCTAACGAATTAC
Found at i:19470404 original size:20 final size:20
Alignment explanation
Indices: 19470321--19470453 Score: 92
Period size: 20 Copynumber: 6.7 Consensus size: 20
19470311 TTGTTAAGGT
* *
19470321 TTTACCAAAACTTCTAACAA
1 TTTACCAAAATTTCTAACGA
* *
19470341 TTTACCAAAATTTTTAATG-
1 TTTACCAAAATTTCTAACGA
* *
19470360 TTTACGAAAATATCTAACGA
1 TTTACCAAAATTTCTAACGA
* *
19470380 ATTACCAAAATTTCTATCGA
1 TTTACCAAAATTTCTAACGA
* * * *
19470400 TTTACTAATATTTATGA-GA
1 TTTACCAAAATTTCTAACGA
* *
19470419 CTTTAACAAAATTTTTAA-GA
1 -TTTACCAAAATTTCTAACGA
*
19470439 TTTTACCAATATTTC
1 -TTTACCAAAATTTC
19470454 CAAATTTTCT
Statistics
Matches: 84, Mismatches: 27, Indels: 4
0.73 0.23 0.03
Matches are distributed among these distances:
19 17 0.20
20 67 0.80
ACGTcount: A:0.40, C:0.15, G:0.05, T:0.40
Consensus pattern (20 bp):
TTTACCAAAATTTCTAACGA
Found at i:19470619 original size:20 final size:20
Alignment explanation
Indices: 19470596--19470634 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
19470586 GATTTACCAA
*
19470596 TATATATTTACCAAAATTTC
1 TATAGATTTACCAAAATTTC
*
19470616 TATAGATTTACCAACATTT
1 TATAGATTTACCAAAATTT
19470635 ACGAGGCTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.15, G:0.03, T:0.44
Consensus pattern (20 bp):
TATAGATTTACCAAAATTTC
Found at i:19470774 original size:40 final size:41
Alignment explanation
Indices: 19470717--19470801 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 41
19470707 ATTACATAAA
* * *
19470717 TCTTTAACTATTTACCAAAGTTTATATGAATTTATCAATATT
1 TCTTTAAC-ATTTACCAAAATATATAAGAATTTATCAATATT
* *
19470759 TCTTTAA-ATTTACCAAAATATCTAAGACTTTATCAATATT
1 TCTTTAACATTTACCAAAATATATAAGAATTTATCAATATT
19470799 TCT
1 TCT
19470802 ATTATCTACC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
40 31 0.82
42 7 0.18
ACGTcount: A:0.36, C:0.14, G:0.04, T:0.46
Consensus pattern (41 bp):
TCTTTAACATTTACCAAAATATATAAGAATTTATCAATATT
Found at i:19470802 original size:20 final size:18
Alignment explanation
Indices: 19470745--19470802 Score: 53
Period size: 20 Copynumber: 3.0 Consensus size: 18
19470735 AGTTTATATG
19470745 AATTTATCAATATTTCTTTA
1 AATTTATCAATATTTC--TA
* * *
19470765 AATTTACCAAAATATCTA
1 AATTTATCAATATTTCTA
19470783 AGACTTTATCAATATTTCTA
1 A-A-TTTATCAATATTTCTA
19470803 TTATCTACCA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
18 3 0.10
19 1 0.03
20 26 0.87
ACGTcount: A:0.40, C:0.14, G:0.02, T:0.45
Consensus pattern (18 bp):
AATTTATCAATATTTCTA
Found at i:19471634 original size:16 final size:15
Alignment explanation
Indices: 19471613--19471642 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
19471603 GCATTTGTTG
19471613 ATATTATTTATTTTTA
1 ATATTA-TTATTTTTA
19471629 ATATTATTATTTTT
1 ATATTATTATTTTT
19471643 GTAATTTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
ATATTATTATTTTTA
Found at i:19482086 original size:10 final size:10
Alignment explanation
Indices: 19482071--19482095 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
19482061 GATGTGTCTT
19482071 CGACCAAATC
1 CGACCAAATC
19482081 CGACCAAATC
1 CGACCAAATC
19482091 CGACC
1 CGACC
19482096 TCCGAGCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.36, C:0.44, G:0.12, T:0.08
Consensus pattern (10 bp):
CGACCAAATC
Found at i:19485179 original size:91 final size:89
Alignment explanation
Indices: 19485023--19485226 Score: 225
Period size: 91 Copynumber: 2.3 Consensus size: 89
19485013 ACACTCCAAT
* * * * * * *
19485023 TTGTGGTTGAACCACAAGTG-TTGCAGGTTAATACGCTACTAGTAGTTGTGAATGCACAATGGGT
1 TTGTGGATAAACCACTAGTGTTTGCAGGTTAATACACTACCAGTAGTTGTAAATGCACAATAGGT
*
19485087 TTACAAATAATAGCTACAAATAAAAA
66 TTACAAATAAAAGCTACAAAT--AAA
*
19485113 TTGTGGATAAACCACTAGTGTTTGCAGGTTAATACAC-AGCCAGTGGTTGTAAATGCACAATAGG
1 TTGTGGATAAACCACTAGTGTTTGCAGGTTAATACACTA-CCAGTAGTTGTAAATGCACAATAGG
* * * * *
19485177 TTTGCAGATAAAAGCTGCCAATAAT
65 TTTACAAATAAAAGCTACAAATAAA
19485202 TTGTGGATAAACCA-TCAGTGTTTGC
1 TTGTGGATAAACCACT-AGTGTTTGC
19485227 TGTTAAAACT
Statistics
Matches: 97, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
88 1 0.01
89 25 0.26
90 18 0.19
91 53 0.55
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (89 bp):
TTGTGGATAAACCACTAGTGTTTGCAGGTTAATACACTACCAGTAGTTGTAAATGCACAATAGGT
TTACAAATAAAAGCTACAAATAAA
Found at i:19485546 original size:61 final size:61
Alignment explanation
Indices: 19485481--19485599 Score: 220
Period size: 61 Copynumber: 2.0 Consensus size: 61
19485471 TTTTGGACTC
* *
19485481 ATTGTGCTATTAGGTTTGCTTTGTTAGTTTGATTCTCATACATTCTGATTGATTGATACTT
1 ATTGTGCTATTAGATTTGCTTTGTTAGTTTGATTCTAATACATTCTGATTGATTGATACTT
19485542 ATTGTGCTATTAGATTTGCTTTGTTAGTTTGATTCTAATACATTCTGATTGATTGATA
1 ATTGTGCTATTAGATTTGCTTTGTTAGTTTGATTCTAATACATTCTGATTGATTGATA
19485600 TGCACTTTTT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 56 1.00
ACGTcount: A:0.22, C:0.10, G:0.18, T:0.50
Consensus pattern (61 bp):
ATTGTGCTATTAGATTTGCTTTGTTAGTTTGATTCTAATACATTCTGATTGATTGATACTT
Found at i:19494049 original size:22 final size:20
Alignment explanation
Indices: 19494024--19494063 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
19494014 GTAATGACTA
*
19494024 AAATACTATTACTTTACAAAGT
1 AAATAATATTA-TTT-CAAAGT
19494046 AAATAATATTATTTCAAA
1 AAATAATATTATTTCAAA
19494064 AGTGTTTTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 3 0.18
22 10 0.59
ACGTcount: A:0.50, C:0.10, G:0.03, T:0.38
Consensus pattern (20 bp):
AAATAATATTATTTCAAAGT
Found at i:19496334 original size:31 final size:29
Alignment explanation
Indices: 19496288--19496355 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 29
19496278 CTTAAAATTT
19496288 TACATGAATTATGATTTAATGTGTAA-TTGTA
1 TACATGAATTATGATTT--TGTGTAACTT-TA
*
19496319 TATATGAACTT-TGATTTTGTGTAACTTTA
1 TACATGAA-TTATGATTTTGTGTAACTTTA
19496348 TACATGAA
1 TACATGAA
19496356 ATTTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
29 16 0.48
30 2 0.06
31 13 0.39
32 2 0.06
ACGTcount: A:0.34, C:0.06, G:0.15, T:0.46
Consensus pattern (29 bp):
TACATGAATTATGATTTTGTGTAACTTTA
Found at i:19512736 original size:17 final size:17
Alignment explanation
Indices: 19512714--19512746 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
19512704 GAATCGTTTG
19512714 ATGCTCTTTACATTTTA
1 ATGCTCTTTACATTTTA
19512731 ATGCTCTTTACATTTT
1 ATGCTCTTTACATTTT
19512747 TGAATCGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.18, G:0.06, T:0.55
Consensus pattern (17 bp):
ATGCTCTTTACATTTTA
Found at i:19518917 original size:16 final size:14
Alignment explanation
Indices: 19518898--19518936 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 14
19518888 GTAATTTAAA
19518898 AAAAATAAACAAAGAT
1 AAAAATAAAC-AA-AT
*
19518914 AAAAGTAAACAAAT
1 AAAAATAAACAAAT
19518928 AAAAATAAA
1 AAAAATAAA
19518937 AATAAGGTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 10 0.48
15 2 0.10
16 9 0.43
ACGTcount: A:0.77, C:0.05, G:0.05, T:0.13
Consensus pattern (14 bp):
AAAAATAAACAAAT
Found at i:19525768 original size:40 final size:40
Alignment explanation
Indices: 19525645--19525817 Score: 148
Period size: 40 Copynumber: 4.3 Consensus size: 40
19525635 AGATCAACCG
* * * * * * *
19525645 AACACACCAGACAGAAGCTCATAAGAGCTGGTCAAACCAA
1 AACACGCCAAACAGAAGCTCATAAAAGCTGATCCAATCGA
* ** * * * * *
19525685 AATACATCAAATAGAAGCTCATAATAGTTGATTCAATCAA
1 AACACGCCAAACAGAAGCTCATAAAAGCTGATCCAATCGA
* * *
19525725 AACATGCCAAACAGAAGCTCATAAGAGCTGATCCAATTGA
1 AACACGCCAAACAGAAGCTCATAAAAGCTGATCCAATCGA
* * * *
19525765 AACACACCAGACAGAAACTCATAAAAGCTGATCCAACCGA
1 AACACGCCAAACAGAAGCTCATAAAAGCTGATCCAATCGA
19525805 AACACGCCAAACA
1 AACACGCCAAACA
19525818 AAGAGTATAA
Statistics
Matches: 104, Mismatches: 29, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.46, C:0.25, G:0.14, T:0.15
Consensus pattern (40 bp):
AACACGCCAAACAGAAGCTCATAAAAGCTGATCCAATCGA
Done.