Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 76 of 290
Found at i:23053835 original size:17 final size:17
Alignment explanation
Indices: 23053805--23053842 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
23053795 TAGTTACTGT
23053805 AAACTAAAACTGTAG-G
1 AAACTAAAACTGTAGTG
*
23053821 AAACTGAAAATTGTAGTG
1 AAACT-AAAACTGTAGTG
23053839 AAAC
1 AAAC
23053843 CTCGATCTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 5 0.26
17 9 0.47
18 5 0.26
ACGTcount: A:0.50, C:0.11, G:0.18, T:0.21
Consensus pattern (17 bp):
AAACTAAAACTGTAGTG
Found at i:23071942 original size:23 final size:24
Alignment explanation
Indices: 23071880--23071945 Score: 80
Period size: 27 Copynumber: 2.7 Consensus size: 24
23071870 GCTATGTGAG
**
23071880 GAAATGAGAGAATGAATGATGATT
1 GAAATGAGAGAATGAGGGATGATT
23071904 GAGAGATGAGAAGAATGAGGGATGATT
1 GA-A-ATGAG-AGAATGAGGGATGATT
23071931 GAAATGAG-GAATGAG
1 GAAATGAGAGAATGAG
23071946 TGAGGGTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
23 7 0.19
24 2 0.05
25 6 0.16
26 6 0.16
27 16 0.43
ACGTcount: A:0.44, C:0.00, G:0.36, T:0.20
Consensus pattern (24 bp):
GAAATGAGAGAATGAGGGATGATT
Found at i:23073029 original size:18 final size:18
Alignment explanation
Indices: 23073006--23073041 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
23072996 TTCATCATAT
23073006 ATATGAA-ATTGATAAGTG
1 ATATGAATA-TGATAAGTG
23073024 ATATGAATATGATAAGTG
1 ATATGAATATGATAAGTG
23073042 TGAGTGTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 16 0.94
19 1 0.06
ACGTcount: A:0.44, C:0.00, G:0.22, T:0.33
Consensus pattern (18 bp):
ATATGAATATGATAAGTG
Found at i:23074744 original size:34 final size:34
Alignment explanation
Indices: 23074680--23074745 Score: 80
Period size: 34 Copynumber: 1.9 Consensus size: 34
23074670 GTGACAGTCT
* **
23074680 AGTATCAGTTAGGGTCGTAGCCCATTACAGTATC
1 AGTATCAGTTAGGGCCGTAGCCCAACACAGTATC
*
23074714 AGTATCAGTGT-GGGCCTTAGCCCAACACAGTA
1 AGTATCAGT-TAGGGCCGTAGCCCAACACAGTA
23074746 ATAGTAACAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 26 0.96
35 1 0.04
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (34 bp):
AGTATCAGTTAGGGCCGTAGCCCAACACAGTATC
Found at i:23084263 original size:23 final size:24
Alignment explanation
Indices: 23084201--23084266 Score: 80
Period size: 27 Copynumber: 2.7 Consensus size: 24
23084191 GCTATGTGAG
**
23084201 GAAATGAGAGAATGAATGATGATT
1 GAAATGAGAGAATGAGGGATGATT
23084225 GAGAGATGAGAAGAATGAGGGATGATT
1 GA-A-ATGAG-AGAATGAGGGATGATT
23084252 GAAATGAG-GAATGAG
1 GAAATGAGAGAATGAG
23084267 TGAGGGTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
23 7 0.19
24 2 0.05
25 6 0.16
26 6 0.16
27 16 0.43
ACGTcount: A:0.44, C:0.00, G:0.36, T:0.20
Consensus pattern (24 bp):
GAAATGAGAGAATGAGGGATGATT
Found at i:23085350 original size:18 final size:18
Alignment explanation
Indices: 23085327--23085362 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
23085317 TTCATCATAT
23085327 ATATGAA-ATTGATAAGTG
1 ATATGAATA-TGATAAGTG
23085345 ATATGAATATGATAAGTG
1 ATATGAATATGATAAGTG
23085363 TGAGTGTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 16 0.94
19 1 0.06
ACGTcount: A:0.44, C:0.00, G:0.22, T:0.33
Consensus pattern (18 bp):
ATATGAATATGATAAGTG
Found at i:23087066 original size:34 final size:33
Alignment explanation
Indices: 23086983--23087078 Score: 104
Period size: 34 Copynumber: 2.8 Consensus size: 33
23086973 GGGCCTAAGA
*
23086983 CCGTAGCCCAACACAGTCTAGTATCAGTTAGGG
1 CCGTAGCCCAACACAGTATAGTATCAGTTAGGG
* **
23087016 TCGTAGCCCATTACAGTATCAGTATCAGTGT-GGG
1 CCGTAGCCCAACACAGTAT-AGTATCAGT-TAGGG
* *
23087050 CCTTAGCCCAACACAGTAATAGTAACAGT
1 CCGTAGCCCAACACAGT-ATAGTATCAGT
23087079 AATGCAATCA
Statistics
Matches: 51, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
33 15 0.29
34 33 0.65
35 3 0.06
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (33 bp):
CCGTAGCCCAACACAGTATAGTATCAGTTAGGG
Found at i:23099064 original size:94 final size:94
Alignment explanation
Indices: 23098903--23099095 Score: 386
Period size: 94 Copynumber: 2.1 Consensus size: 94
23098893 TTGTTGTTCA
23098903 ACATTACTGGAGCCATCTCCTGAACAGTTCTATTTTTCCTTTCTACCACTCCATTCTATTGACGA
1 ACATTACTGGAGCCATCTCCTGAACAGTTCTATTTTTCCTTTCTACCACTCCATTCTATTGACGA
23098968 GTCTTGATAGTATAGAGTTCATGAGCAAT
66 GTCTTGATAGTATAGAGTTCATGAGCAAT
23098997 ACATTACTGGAGCCATCTCCTGAACAGTTCTATTTTTCCTTTCTACCACTCCATTCTATTGACGA
1 ACATTACTGGAGCCATCTCCTGAACAGTTCTATTTTTCCTTTCTACCACTCCATTCTATTGACGA
23099062 GTCTTGATAGTATAGAGTTCATGAGCAAT
66 GTCTTGATAGTATAGAGTTCATGAGCAAT
23099091 ACATT
1 ACATT
23099096 CCTTATCACA
Statistics
Matches: 99, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
94 99 1.00
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (94 bp):
ACATTACTGGAGCCATCTCCTGAACAGTTCTATTTTTCCTTTCTACCACTCCATTCTATTGACGA
GTCTTGATAGTATAGAGTTCATGAGCAAT
Found at i:23104226 original size:14 final size:15
Alignment explanation
Indices: 23104207--23104241 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
23104197 AGTGTTGGGG
*
23104207 TAAAAATTTTAAAAA
1 TAAAAATTGTAAAAA
*
23104222 TAAAAATTGTGAAAA
1 TAAAAATTGTAAAAA
23104237 TAAAA
1 TAAAA
23104242 TAAAATAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.29
Consensus pattern (15 bp):
TAAAAATTGTAAAAA
Found at i:23107236 original size:5 final size:5
Alignment explanation
Indices: 23107226--23107263 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
23107216 CCAATTTATG
23107226 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
23107264 GAACAGACAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:23109497 original size:154 final size:154
Alignment explanation
Indices: 23109217--23109503 Score: 574
Period size: 154 Copynumber: 1.9 Consensus size: 154
23109207 TTCCATCTGG
23109217 TTCAAAAGGGTCTAGCATGGGCTACAAAATCATGGTAAGTGAATTTTGATAACAAGTCCTATTAA
1 TTCAAAAGGGTCTAGCATGGGCTACAAAATCATGGTAAGTGAATTTTGATAACAAGTCCTATTAA
23109282 ACCGTGAAATGATAAAATAGTGAATCGTAATATTAATGAATTTTTTAAATATTGAATAACCTTTT
66 ACCGTGAAATGATAAAATAGTGAATCGTAATATTAATGAATTTTTTAAATATTGAATAACCTTTT
23109347 GATATCTTATTAATCAAAAGGTTA
131 GATATCTTATTAATCAAAAGGTTA
23109371 TTCAAAAGGGTCTAGCATGGGCTACAAAATCATGGTAAGTGAATTTTGATAACAAGTCCTATTAA
1 TTCAAAAGGGTCTAGCATGGGCTACAAAATCATGGTAAGTGAATTTTGATAACAAGTCCTATTAA
23109436 ACCGTGAAATGATAAAATAGTGAATCGTAATATTAATGAATTTTTTAAATATTGAATAACCTTTT
66 ACCGTGAAATGATAAAATAGTGAATCGTAATATTAATGAATTTTTTAAATATTGAATAACCTTTT
23109501 GAT
131 GAT
23109504 TAATAAGATA
Statistics
Matches: 133, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
154 133 1.00
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.34
Consensus pattern (154 bp):
TTCAAAAGGGTCTAGCATGGGCTACAAAATCATGGTAAGTGAATTTTGATAACAAGTCCTATTAA
ACCGTGAAATGATAAAATAGTGAATCGTAATATTAATGAATTTTTTAAATATTGAATAACCTTTT
GATATCTTATTAATCAAAAGGTTA
Found at i:23110471 original size:36 final size:36
Alignment explanation
Indices: 23110424--23110497 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
23110414 CTATGGCCAT
23110424 AGTTTCAACCATGAAATCAAAAGTGCATAAAAGTAA
1 AGTTTCAACCATGAAATCAAAAGTGCATAAAAGTAA
23110460 AGTTTCAACCATGAAATCAAAAGTGCATAAAAGTAA
1 AGTTTCAACCATGAAATCAAAAGTGCATAAAAGTAA
23110496 AG
1 AG
23110498 GACATTGAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.50, C:0.14, G:0.15, T:0.22
Consensus pattern (36 bp):
AGTTTCAACCATGAAATCAAAAGTGCATAAAAGTAA
Found at i:23119726 original size:27 final size:27
Alignment explanation
Indices: 23119696--23119896 Score: 251
Period size: 27 Copynumber: 7.4 Consensus size: 27
23119686 TGAGTCCGCT
* * * *
23119696 CACTCAGTGCTATATAATCAACTCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
* *
23119723 CACTTAGTGCTACGTAATCAAATCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
23119750 CACTTAGTGCTACATAGTCAAACTCGCA
1 CACTTAGTGCTACATAGTCAAA-TCGCA
** * *
23119778 CACTTAGTGCCGCATGGTCAATTCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
* **
23119805 CACTTAGTGC-ATCATATTCATTTCGCA
1 CACTTAGTGCTA-CATAGTCAAATCGCA
*
23119832 CACTTAGTGCAACATAGTCAAATCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
23119859 CACTTAGTGCTACATAGTCAAATCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
23119886 CACTTAGTGCT
1 CACTTAGTGCT
23119897 GTACAATTTA
Statistics
Matches: 153, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
27 129 0.84
28 24 0.16
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (27 bp):
CACTTAGTGCTACATAGTCAAATCGCA
Found at i:23127777 original size:27 final size:27
Alignment explanation
Indices: 23127747--23127947 Score: 242
Period size: 27 Copynumber: 7.4 Consensus size: 27
23127737 TGAGTCCGCT
* * * *
23127747 CACTCAGTGCTATATAATCAACTCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
* *
23127774 CACTTAGTGCTACGTAATCAAATCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
23127801 CACTTAGTGCTACATAGTCAAACTCGCA
1 CACTTAGTGCTACATAGTCAAA-TCGCA
** * *
23127829 CACTTAGTGCCGCATGGTCAATTCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
* **
23127856 CACTTAGTGC-ATCATATTCATTTCGCA
1 CACTTAGTGCTA-CATAGTCAAATCGCA
*
23127883 CACTTAGTGCAACATAGTCAAATCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
*
23127910 CACTTAGTGCTACATAGTCAAATCGTA
1 CACTTAGTGCTACATAGTCAAATCGCA
23127937 CACTTAGTGCT
1 CACTTAGTGCT
23127948 GTACAATTTA
Statistics
Matches: 152, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
27 128 0.84
28 24 0.16
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (27 bp):
CACTTAGTGCTACATAGTCAAATCGCA
Found at i:23132390 original size:13 final size:13
Alignment explanation
Indices: 23132372--23132401 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
23132362 ATGGCAATCA
23132372 TGTCACACGGCCG
1 TGTCACACGGCCG
*
23132385 TGTCACACGGGCG
1 TGTCACACGGCCG
23132398 TGTC
1 TGTC
23132402 CCTGCTAAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.13, C:0.33, G:0.33, T:0.20
Consensus pattern (13 bp):
TGTCACACGGCCG
Found at i:23136319 original size:27 final size:26
Alignment explanation
Indices: 23136262--23136320 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
23136252 GTACCTAGAC
*
23136262 CCCCTAGTTGATAAATTGACTATTAT
1 CCCCTAGTTGATAAAATGACTATTAT
* * * *
23136288 GCCCTTGTTGATAAAATGATTGTTAT
1 CCCCTAGTTGATAAAATGACTATTAT
23136314 ACCCCTA
1 -CCCCTA
23136321 TGAGATGTAT
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (26 bp):
CCCCTAGTTGATAAAATGACTATTAT
Found at i:23141613 original size:208 final size:208
Alignment explanation
Indices: 23141241--23141650 Score: 669
Period size: 208 Copynumber: 2.0 Consensus size: 208
23141231 ACGCCTACTA
* *
23141241 ATCGCGTGATTTCGTGATAGATTTTAAATATTTATAATTAATCATTCTTGAAACTAACTATTATC
1 ATCGCGAGATTTCGTGATAGATTTTAAATATTAATAATTAATCATTCTTGAAACTAACTATTATC
* ** * *
23141306 GCGATGTAGGCAAGTGTACCTATCGAACAGTAGTATAGTTTTAGCAAGACCGGGTTGTCCAACCC
66 ACGATACAGGCAAGTGTACCTATCGAACAGTAGTATAATTTTAGCAAGACCGGATTGTCCAACCC
* *
23141371 AAAGGAACTAAAAGTACTAGTAATGACTGTCTTTTTATTATCTAGCCTAAGAATAAAGAGGTTTT
131 AAAGGAACTAAAAGTACTAGTAATGACTGTCTTTTTATTATCTAGCCTAAGAATAAAAAAG-TTT
23141436 TGTTTTAACTAATG
195 TGTTTTAACTAATG
* * * *
23141450 ATCGCGAGATTTTGTGATAGGTTTTAAATATTAATAATTACTCGTTCTTG-AACTAACTATTATC
1 ATCGCGAGATTTCGTGATAGATTTTAAATATTAATAATTAATCATTCTTGAAACTAACTATTATC
* *
23141514 ACTATACAGGCAAGTGTACCTATCGAACAGTAGTATAATTTTAGCAAGACCGGATTGTCGAACCC
66 ACGATACAGGCAAGTGTACCTATCGAACAGTAGTATAATTTTAGCAAGACCGGATTGTCCAACCC
23141579 AAAGGAACTAAAAGTACTAGTAATGACTGTCTTTTTATTATCTAGCCTAAGAATAAAAAAGTTTT
131 AAAGGAACTAAAAGTACTAGTAATGACTGTCTTTTTATTATCTAGCCTAAGAATAAAAAAGTTTT
23141644 GTTTTAA
196 GTTTTAA
23141651 TTAACTAATT
Statistics
Matches: 186, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
207 11 0.06
208 131 0.70
209 44 0.24
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (208 bp):
ATCGCGAGATTTCGTGATAGATTTTAAATATTAATAATTAATCATTCTTGAAACTAACTATTATC
ACGATACAGGCAAGTGTACCTATCGAACAGTAGTATAATTTTAGCAAGACCGGATTGTCCAACCC
AAAGGAACTAAAAGTACTAGTAATGACTGTCTTTTTATTATCTAGCCTAAGAATAAAAAAGTTTT
GTTTTAACTAATG
Found at i:23146918 original size:46 final size:46
Alignment explanation
Indices: 23146851--23147068 Score: 312
Period size: 46 Copynumber: 4.7 Consensus size: 46
23146841 ATGGCAACCT
*
23146851 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAA
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAA
*
23146897 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAA
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAA
*
23146943 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAA
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAA
* ** * *
23146989 AAGAATAAGACCATGGTTGAAAGATACCATAGCAACATGACA-GAAA
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG-AA
* * * *
23147035 ATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCA
23147069 TCACGTCAAA
Statistics
Matches: 158, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 157 0.99
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAA
Found at i:23150317 original size:24 final size:25
Alignment explanation
Indices: 23150285--23150339 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
23150275 TACAATATCC
23150285 TATTTTTTTA-TTTATTCTAATTTT
1 TATTTTTTTATTTTATTCTAATTTT
* *
23150309 TATTTTTTTATTTTATTTTTATTTT
1 TATTTTTTTATTTTATTCTAATTTT
*
23150334 TCTTTT
1 TATTTT
23150340 GATTTTTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 10 0.37
25 17 0.63
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (25 bp):
TATTTTTTTATTTTATTCTAATTTT
Found at i:23150346 original size:7 final size:6
Alignment explanation
Indices: 23150285--23150379 Score: 70
Period size: 6 Copynumber: 16.0 Consensus size: 6
23150275 TACAATATCC
* * *
23150285 TATTTT T-TTATT TATTCT AATTTT TATTTT TTTATTT TATTTT TATTTT
1 TATTTT TATT-TT TATTTT TATTTT TATTTT TAT-TTT TATTTT TATTTT
* * * * * *
23150334 TCTTTT GATTTT TATTTT CA-TTT CAATTT TATTAT TA-TTT TATTTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
23150380 GAATGTCATA
Statistics
Matches: 69, Mismatches: 15, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
5 11 0.16
6 51 0.74
7 7 0.10
ACGTcount: A:0.19, C:0.04, G:0.01, T:0.76
Consensus pattern (6 bp):
TATTTT
Found at i:23155582 original size:55 final size:55
Alignment explanation
Indices: 23155523--23155629 Score: 153
Period size: 55 Copynumber: 1.9 Consensus size: 55
23155513 ACCATGGATG
* * * *
23155523 TTCCACACGGGCGT-GTCGCACGCCCGTGTTGTTTTGGCAGGCTAGCCCACGGTTC
1 TTCCACACAGGCGTAAT-GCACGCCCGTGTTGTTCTGGCAGGCTAGACCACGGTTC
*
23155578 TTCCACACAGGCGTAATGCACGCCCGTGTTGTTCTGGCAGGCTCGACCACGG
1 TTCCACACAGGCGTAATGCACGCCCGTGTTGTTCTGGCAGGCTAGACCACGG
23155630 CCATATCGAA
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
55 45 0.98
56 1 0.02
ACGTcount: A:0.14, C:0.33, G:0.30, T:0.23
Consensus pattern (55 bp):
TTCCACACAGGCGTAATGCACGCCCGTGTTGTTCTGGCAGGCTAGACCACGGTTC
Found at i:23163529 original size:24 final size:24
Alignment explanation
Indices: 23163502--23163551 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
23163492 TCCCAAGGGT
*
23163502 CAGTGGTTAGAAGGGCCCGAATCG
1 CAGTGGTTAGAAGGGACCGAATCG
* *
23163526 CAGTGGTTAGGAGGGACTGAATCG
1 CAGTGGTTAGAAGGGACCGAATCG
23163550 CA
1 CA
23163552 TCAGCCAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.26, C:0.18, G:0.38, T:0.18
Consensus pattern (24 bp):
CAGTGGTTAGAAGGGACCGAATCG
Found at i:23164149 original size:40 final size:40
Alignment explanation
Indices: 23164094--23164175 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
23164084 TAACTAACCT
23164094 AAGAATGCAAATTAAATGATAGAATAATTTGCAAAATGAA
1 AAGAATGCAAATTAAATGATAGAATAATTTGCAAAATGAA
23164134 AAGAATGCAAATTAAATGATAGAATAATTTGCAAAATGAA
1 AAGAATGCAAATTAAATGATAGAATAATTTGCAAAATGAA
23164174 AA
1 AA
23164176 ATAGTTCAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.56, C:0.05, G:0.15, T:0.24
Consensus pattern (40 bp):
AAGAATGCAAATTAAATGATAGAATAATTTGCAAAATGAA
Found at i:23164166 original size:24 final size:24
Alignment explanation
Indices: 23164099--23164168 Score: 75
Period size: 20 Copynumber: 3.2 Consensus size: 24
23164089 AACCTAAGAA
23164099 TGCAAATTAAATGATAGAATAATT
1 TGCAAATTAAATGATAGAATAATT
*
23164123 TGC--A--AAATGA-A-AAGAA--
1 TGCAAATTAAATGATAGAATAATT
23164139 TGCAAATTAAATGATAGAATAATT
1 TGCAAATTAAATGATAGAATAATT
23164163 TGCAAA
1 TGCAAA
23164169 ATGAAAAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 16
0.67 0.04 0.30
Matches are distributed among these distances:
16 3 0.08
18 5 0.14
19 1 0.03
20 12 0.33
21 1 0.03
22 5 0.14
24 9 0.25
ACGTcount: A:0.53, C:0.06, G:0.14, T:0.27
Consensus pattern (24 bp):
TGCAAATTAAATGATAGAATAATT
Found at i:23181541 original size:18 final size:18
Alignment explanation
Indices: 23181501--23181541 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
23181491 AGGCCATTTT
23181501 TGGGCTATGTGGGCCACA
1 TGGGCTATGTGGGCCACA
*
23181519 CGGGC-ATGTGGGCCCACA
1 TGGGCTATGTGGG-CCACA
23181537 TGGGC
1 TGGGC
23181542 CCATAATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.15, C:0.27, G:0.41, T:0.17
Consensus pattern (18 bp):
TGGGCTATGTGGGCCACA
Found at i:23181705 original size:26 final size:26
Alignment explanation
Indices: 23181649--23181705 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
23181639 TACCTAGACC
* *
23181649 CCCTAGTTGATAAAATGACTATTATG
1 CCCTTGTTGATAAAATAACTATTATG
*
23181675 CCCTTGTTGATAAAATAACTGTTATG
1 CCCTTGTTGATAAAATAACTATTATG
23181701 CCCTT
1 CCCTT
23181706 ATGAGATGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (26 bp):
CCCTTGTTGATAAAATAACTATTATG
Found at i:23188212 original size:20 final size:20
Alignment explanation
Indices: 23188174--23188212 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
23188164 ATTTCTCTGA
*
23188174 ATTTTATTCTCTTTGATTTT
1 ATTTTATTCTCTTTAATTTT
23188194 ATTTTATTC-CTTATAATTT
1 ATTTTATTCTCTT-TAATTT
23188213 ATAAAATAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.21, C:0.10, G:0.03, T:0.67
Consensus pattern (20 bp):
ATTTTATTCTCTTTAATTTT
Found at i:23200845 original size:25 final size:23
Alignment explanation
Indices: 23200759--23200846 Score: 63
Period size: 25 Copynumber: 3.7 Consensus size: 23
23200749 GATGACGATG
*
23200759 TTTAAAATTTTTTTATTTATTATT
1 TTTAATATTTTTTTATTTATT-TT
*
23200783 TATT-ATTTTATTTTTATTTATCTTCT
1 T-TTAATATT-TTTTTATTTAT-TT-T
* *
23200809 TTCAGTA-TTTTTTATTTTATTTT
1 TTTAATATTTTTTTA-TTTATTTT
*
23200832 TTTAATATTATTTTA
1 TTTAATATTTTTTTA
23200847 ATTTTAGTTT
Statistics
Matches: 49, Mismatches: 8, Indels: 14
0.69 0.11 0.20
Matches are distributed among these distances:
23 6 0.12
24 18 0.37
25 21 0.43
26 4 0.08
ACGTcount: A:0.24, C:0.03, G:0.01, T:0.72
Consensus pattern (23 bp):
TTTAATATTTTTTTATTTATTTT
Found at i:23200863 original size:26 final size:23
Alignment explanation
Indices: 23200814--23200867 Score: 56
Period size: 25 Copynumber: 2.3 Consensus size: 23
23200804 CTTCTTTCAG
**
23200814 TATTTTTTATTTTATTTTTTTAA
1 TATTTTTTATTTTATTTTCATAA
23200837 TATTATTTTAATTTTAGTTTTCATAA
1 TATT-TTTT-ATTTTA-TTTTCATAA
23200863 T-TTTT
1 TATTTT
23200868 ATTGAATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 4 0.15
24 6 0.23
25 8 0.31
26 8 0.31
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.72
Consensus pattern (23 bp):
TATTTTTTATTTTATTTTCATAA
Found at i:23204192 original size:14 final size:17
Alignment explanation
Indices: 23204173--23204214 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
23204163 TCCAAAAATG
23204173 AATTTATT-TT-A-TTA
1 AATTTATTATTAATTTA
23204187 AATTTATTATTAATTTA
1 AATTTATTATTAATTTA
*
23204204 AATTTAATATT
1 AATTTATTATT
23204215 TATCTTATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 8 0.33
15 2 0.08
16 1 0.04
17 13 0.54
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
AATTTATTATTAATTTA
Found at i:23205642 original size:70 final size:72
Alignment explanation
Indices: 23205528--23205678 Score: 243
Period size: 71 Copynumber: 2.1 Consensus size: 72
23205518 GGGGAATCAT
* *
23205528 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTT-TCATTTCAAATATACAATG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATG
23205592 GATATCG
66 GATATCG
***
23205599 CACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATG
23205663 GATATCG
66 GATATCG
23205670 CACTTAGCA
1 CACTTAGCA
23205679 CCACCAATGA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 28 0.38
71 46 0.62
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (72 bp):
CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATG
GATATCG
Found at i:23205782 original size:104 final size:103
Alignment explanation
Indices: 23205598--23205820 Score: 367
Period size: 104 Copynumber: 2.2 Consensus size: 103
23205588 AATGGATATC
23205598 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
* *
23205663 GATATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GATATCGCACATAGCACCACCAATAAACCGGGGAATCA
23205701 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
23205766 GGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCA
65 GGAT-ATCGCACATAGCACCACCAATAAACCGGGGAATCA
**
23205805 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
23205821 TTTATATACA
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 17 0.15
104 94 0.84
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (103 bp):
GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
GATATCGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:23206181 original size:29 final size:29
Alignment explanation
Indices: 23206148--23206211 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
23206138 TAATCCACCA
23206148 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
23206177 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
23206207 CCCAA
1 CCCAA
23206212 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:23206185 original size:30 final size:30
Alignment explanation
Indices: 23206155--23206211 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
23206145 CCACCCAACT
23206155 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
23206184 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
23206212 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:23213104 original size:26 final size:26
Alignment explanation
Indices: 23213068--23213119 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
23213058 CACCACTGAA
* *
23213068 TCGGGGAATCATCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
23213094 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
23213120 CTTTTCATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.21, T:0.15
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:23213196 original size:70 final size:71
Alignment explanation
Indices: 23213080--23213230 Score: 241
Period size: 72 Copynumber: 2.1 Consensus size: 71
23213070 GGGGAATCAT
*
23213080 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTT-CATTTCAAATATACAATGG
1 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATACAATGG
23213144 ATATCG
66 ATATCG
* ***
23213150 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATACAATG
23213215 GATATCG
65 GATATCG
23213222 CACTTAGCA
1 CACTTAGCA
23213231 CCACCAATGA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 16 0.22
71 28 0.38
72 30 0.41
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (71 bp):
CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATACAATGG
ATATCG
Found at i:23213273 original size:104 final size:104
Alignment explanation
Indices: 23213149--23213372 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
23213139 AATGGATATC
23213149 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
23213214 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
23213253 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
23213318 GGATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
**
23213357 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
23213373 TTTATATACA
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:23213734 original size:29 final size:29
Alignment explanation
Indices: 23213701--23213764 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
23213691 TAATCCACCA
23213701 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
23213730 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
23213760 CCCAA
1 CCCAA
23213765 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:23213738 original size:30 final size:30
Alignment explanation
Indices: 23213708--23213764 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
23213698 CCACCCAACT
23213708 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
23213737 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
23213765 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:23218394 original size:26 final size:26
Alignment explanation
Indices: 23218363--23218414 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
23218353 ATTCAGTTTG
23218363 AGTATTGATTGAATCGACTATTTGAA
1 AGTATTGATTGAATCGACTATTTGAA
23218389 AGTATTGATTGAATCGACTATTTGAA
1 AGTATTGATTGAATCGACTATTTGAA
23218415 CACCCCTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (26 bp):
AGTATTGATTGAATCGACTATTTGAA
Found at i:23220752 original size:16 final size:16
Alignment explanation
Indices: 23220731--23220761 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23220721 AAATAAAGTA
*
23220731 AAAGAAGCATCAAAAC
1 AAAGAAGCAACAAAAC
23220747 AAAGAAGCAACAAAA
1 AAAGAAGCAACAAAA
23220762 GAACTGAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.16, G:0.13, T:0.03
Consensus pattern (16 bp):
AAAGAAGCAACAAAAC
Found at i:23248948 original size:21 final size:21
Alignment explanation
Indices: 23248902--23248952 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
23248892 TTTATTGTTA
23248902 TTTATTTTAGACCTTTCATATG
1 TTTATTTTAGA-CTTTCATATG
*
23248924 -TTATTTTAGA-TTGTTATATG
1 TTTATTTTAGACTT-TCATATG
23248944 TTTATTTTA
1 TTTATTTTA
23248953 ATTCGCTCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 2 0.08
20 6 0.23
21 18 0.69
ACGTcount: A:0.24, C:0.06, G:0.10, T:0.61
Consensus pattern (21 bp):
TTTATTTTAGACTTTCATATG
Found at i:23251537 original size:21 final size:20
Alignment explanation
Indices: 23251513--23251579 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 20
23251503 AATAAAAATT
23251513 TATAAACAAAGTATATAATAA
1 TATAAACAAA-TATATAATAA
*
23251534 TATAAAC-CATATGATAAGTAA
1 TATAAACAAATAT-ATAA-TAA
* *
23251555 TATAAATATATATATAATAAA
1 TATAAACAAATATATAAT-AA
23251576 TATA
1 TATA
23251580 TATAATATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
19 3 0.08
20 6 0.15
21 26 0.67
22 4 0.10
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.33
Consensus pattern (20 bp):
TATAAACAAATATATAATAA
Found at i:23251840 original size:14 final size:14
Alignment explanation
Indices: 23251811--23251846 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
23251801 AATATAAGGA
23251811 ATAATATATATAGT
1 ATAATATATATAGT
23251825 ATAATATATAGT-GT
1 ATAATATATA-TAGT
23251839 ATAATATA
1 ATAATATA
23251847 ATTTATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 20 0.95
15 1 0.05
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (14 bp):
ATAATATATATAGT
Found at i:23253624 original size:31 final size:31
Alignment explanation
Indices: 23253564--23253632 Score: 88
Period size: 31 Copynumber: 2.2 Consensus size: 31
23253554 AATTATAAAA
*
23253564 TGATCACTCAATTATTATTAAATTTCTTTTT
1 TGATCACTCAATTATTATCAAATTTCTTTTT
*
23253595 TGGTCACTCAATTA-T-TCAAATTTACCTTTTT
1 TGATCACTCAATTATTATCAAATTT--CTTTTT
23253626 TGATCAC
1 TGATCAC
23253633 CCAACTATCT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 7 0.21
30 1 0.03
31 25 0.76
ACGTcount: A:0.28, C:0.17, G:0.06, T:0.49
Consensus pattern (31 bp):
TGATCACTCAATTATTATCAAATTTCTTTTT
Found at i:23253806 original size:57 final size:58
Alignment explanation
Indices: 23253684--23253808 Score: 144
Period size: 57 Copynumber: 2.2 Consensus size: 58
23253674 CCAACTAGTG
* ** *
23253684 ACCAAAAAGACAAAATCGAATAGTTGGGTGACCATTTTGTAACTTTTCATATTTGGGTG
1 ACCAAAAA-ACAAAATCGAATAGTTGGGTGACCATTTTGTAACTTTTCATAGTTAAGTA
* * * * * *
23253743 ATCAAAAAA-AAAGTCTAATAGTTTGGTGACTATTTTGTAATTTTTCATAGTTAAGTA
1 ACCAAAAAACAAAATCGAATAGTTGGGTGACCATTTTGTAACTTTTCATAGTTAAGTA
23253800 ACCAAAAAA
1 ACCAAAAAA
23253809 GAAACCATAA
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
57 47 0.85
58 1 0.02
59 7 0.13
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (58 bp):
ACCAAAAAACAAAATCGAATAGTTGGGTGACCATTTTGTAACTTTTCATAGTTAAGTA
Found at i:23256431 original size:7 final size:7
Alignment explanation
Indices: 23256419--23256446 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
23256409 CGTTAGCTTT
23256419 ATTGTTA
1 ATTGTTA
23256426 ATTGTTA
1 ATTGTTA
23256433 ATTGTTA
1 ATTGTTA
23256440 ATTGTTA
1 ATTGTTA
23256447 CCTTAATTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (7 bp):
ATTGTTA
Found at i:23261192 original size:34 final size:33
Alignment explanation
Indices: 23261127--23261214 Score: 90
Period size: 34 Copynumber: 2.6 Consensus size: 33
23261117 TTTCAGTTAA
*
23261127 GGCCTTAGCCCATTTCAGAATCAGAAACAGTGTG
1 GGCCTAAGCCCATTTCAGAATCAGAAACAGTG-G
* *
23261161 GGCCTGAGCCCATTTCAGTAA-CA-ATATCAGTGG
1 GGCCTAAGCCCATTTCAG-AATCAGA-AACAGTGG
* *
23261194 GGCCTAAACCCATTACAGAAT
1 GGCCTAAGCCCATTTCAGAAT
23261215 TAGTATAGTA
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
32 2 0.04
33 17 0.37
34 25 0.54
35 2 0.04
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.23
Consensus pattern (33 bp):
GGCCTAAGCCCATTTCAGAATCAGAAACAGTGG
Found at i:23263548 original size:60 final size:60
Alignment explanation
Indices: 23263472--23263606 Score: 168
Period size: 60 Copynumber: 2.2 Consensus size: 60
23263462 GTGTTAACTT
* *
23263472 GGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCC-CTTAC-AGTATC-AGAGTATATTG
1 GGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAG--TCGAGA-TATATTG
* *
23263533 GGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAGTCGAGATATATTG
1 GGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATATTG
*
23263593 GGCCTTGCCCATAT
1 GGCCTAGCCCATAT
23263607 TAACATAGTT
Statistics
Matches: 66, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
60 53 0.80
61 11 0.17
62 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (60 bp):
GGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATATTG
Found at i:23263570 original size:28 final size:27
Alignment explanation
Indices: 23263472--23263570 Score: 74
Period size: 28 Copynumber: 3.4 Consensus size: 27
23263462 GTGTTAACTT
* *
23263472 GGCCTTAGCCCATATCAATATTAATCTG
1 GGCC-TAGCCCATATCAGTATCAATCTG
* *
23263500 GGCCATAGCCCCT-TACAGTATCAGAGTATATTG
1 GGCC-TAGCCCATAT-CAGTATC--A--AT-CTG
23263533 GGCCTAGCCCATATCAGTATCAATCTG
1 GGCCTAGCCCATATCAGTATCAATCTG
23263560 GGCCGTAGCCC
1 GGCC-TAGCCC
23263571 TATTACAAGT
Statistics
Matches: 56, Mismatches: 7, Indels: 16
0.71 0.09 0.20
Matches are distributed among these distances:
27 7 0.12
28 24 0.43
30 2 0.04
32 16 0.29
33 7 0.12
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.26
Consensus pattern (27 bp):
GGCCTAGCCCATATCAGTATCAATCTG
Found at i:23265338 original size:122 final size:122
Alignment explanation
Indices: 23265121--23265367 Score: 476
Period size: 122 Copynumber: 2.0 Consensus size: 122
23265111 AGCAGCCTTA
23265121 TCCACCTGCTTGCACCGCTTCAGCATGCTGCGAAGAGTCCTGGTCAGACCTCAATTCCTTCCCCA
1 TCCACCTGCTTGCACCGCTTCAGCATGCTGCGAAGAGTCCTGGTCAGACCTCAATTCCTTCCCCA
23265186 CGCATGCAGCAAAAATCCGAACCTTGCGTGCGCGAACTGCAGCTTGAACCCCAGACC
66 CGCATGCAGCAAAAATCCGAACCTTGCGTGCGCGAACTGCAGCTTGAACCCCAGACC
23265243 TCCACCTGCTTGCACCGCTTCAGCATGCTGCGAAGAGTCCTGGTCAGACCTCAATTCCTTCCCCA
1 TCCACCTGCTTGCACCGCTTCAGCATGCTGCGAAGAGTCCTGGTCAGACCTCAATTCCTTCCCCA
* *
23265308 TGCATGCAGCTAAAATCCGAACCTTGCGTGCGCGAACTGCAGCTTGAACCCCAGACC
66 CGCATGCAGCAAAAATCCGAACCTTGCGTGCGCGAACTGCAGCTTGAACCCCAGACC
23265365 TCC
1 TCC
23265368 GTCTGCCTTG
Statistics
Matches: 123, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
122 123 1.00
ACGTcount: A:0.22, C:0.37, G:0.20, T:0.21
Consensus pattern (122 bp):
TCCACCTGCTTGCACCGCTTCAGCATGCTGCGAAGAGTCCTGGTCAGACCTCAATTCCTTCCCCA
CGCATGCAGCAAAAATCCGAACCTTGCGTGCGCGAACTGCAGCTTGAACCCCAGACC
Found at i:23266151 original size:17 final size:19
Alignment explanation
Indices: 23266129--23266174 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
23266119 ACATACATGC
23266129 AATAAT-ATTTT-TCTAAT
1 AATAATAATTTTATCTAAT
*
23266146 AATAATAATTTTATCTCAT
1 AATAATAATTTTATCTAAT
*
23266165 AATACTAATT
1 AATAATAATT
23266175 AAAATTTCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 6 0.24
18 5 0.20
19 14 0.56
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (19 bp):
AATAATAATTTTATCTAAT
Found at i:23266705 original size:36 final size:35
Alignment explanation
Indices: 23266638--23266707 Score: 86
Period size: 36 Copynumber: 2.0 Consensus size: 35
23266628 CTCACTTCAA
* * * *
23266638 ATCTCCCTTAACTCTCTCTTAAAATCTCTCCACAT
1 ATCTCCCTCAACTCCCTCCTAAAATCCCTCCACAT
*
23266673 ATCTCTCCTCAACTCCCTCCTACAATCCCTCCACA
1 ATCTC-CCTCAACTCCCTCCTAAAATCCCTCCACA
23266708 ACTAGTTCAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
35 5 0.17
36 24 0.83
ACGTcount: A:0.24, C:0.44, G:0.00, T:0.31
Consensus pattern (35 bp):
ATCTCCCTCAACTCCCTCCTAAAATCCCTCCACAT
Found at i:23268264 original size:13 final size:13
Alignment explanation
Indices: 23268242--23268274 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
23268232 AAGGGTTTGT
23268242 TTAT-TAAACTAA
1 TTATCTAAACTAA
23268254 TTATCTAAACTAA
1 TTATCTAAACTAA
*
23268267 TTAACTAA
1 TTATCTAA
23268275 TTTAACTAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:23270103 original size:18 final size:19
Alignment explanation
Indices: 23270070--23270106 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
23270060 TCGCCGGACT
23270070 AGGGTTAAAGGTGTTACCA
1 AGGGTTAAAGGTGTTACCA
23270089 AGGGTTAAA-GTGTTACCA
1 AGGGTTAAAGGTGTTACCA
23270107 GACGAATCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (19 bp):
AGGGTTAAAGGTGTTACCA
Found at i:23271798 original size:43 final size:42
Alignment explanation
Indices: 23271725--23271846 Score: 122
Period size: 42 Copynumber: 2.9 Consensus size: 42
23271715 CATAAGCTTG
* *
23271725 TACAATGCCGAC-ATCCCAGAC-GTGGCCTTACATGTAATCAAA
1 TACAATGCC-ACTATCCCAGACAG-GGTCTTACACGTAATCAAA
* *
23271767 TATCAATGCCACTATCCCAGACAGGGTCTTACACGAAATCATA
1 TA-CAATGCCACTATCCCAGACAGGGTCTTACACGTAATCAAA
* * * * *
23271810 TACGATGCCAATGTCCCAGACATGGTTTTACACGTAA
1 TACAATGCCACTATCCCAGACAGGGTCTTACACGTAA
23271847 ATCACAAATC
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 33 0.49
43 33 0.49
44 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (42 bp):
TACAATGCCACTATCCCAGACAGGGTCTTACACGTAATCAAA
Found at i:23271873 original size:44 final size:42
Alignment explanation
Indices: 23271781--23271887 Score: 108
Period size: 44 Copynumber: 2.5 Consensus size: 42
23271771 AATGCCACTA
* * **
23271781 TCCCAGACAGGGTCTTACACGAAATCATATACGATGCCAATG
1 TCCCAGACAGGGTCTTACACGAAATCACAAACGATGAAAATG
* *
23271823 TCCCAGACATGGTTTTACACGTAAATCACAAATCGATGAAAATG
1 TCCCAGACAGGGTCTTACACG-AAATCACAAA-CGATGAAAATG
* *
23271867 TTCCAGAC-GTAGTCTTACACG
1 TCCCAGACAG-GGTCTTACACG
23271888 GTAACACATA
Statistics
Matches: 52, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
42 19 0.37
43 8 0.15
44 25 0.48
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (42 bp):
TCCCAGACAGGGTCTTACACGAAATCACAAACGATGAAAATG
Found at i:23278408 original size:42 final size:42
Alignment explanation
Indices: 23278318--23278431 Score: 108
Period size: 43 Copynumber: 2.7 Consensus size: 42
23278308 TCCCAGACGC
* *
23278318 GGTCTTACATGTAATCAAATATCGATGCCATTGTCCCAGAAA
1 GGTCTTACACGAAATCAAATATCGATGCCATTGTCCCAGAAA
* * *
23278360 GTGTCTTACACGAAATCATATAT-GATGCCAATT-TTCCAGACAT
1 G-GTCTTACACGAAATCAAATATCGATGCC-ATTGTCCCAGA-AA
*
23278403 GGTCTTTCACGTAAATCACAA-ATCGATGC
1 GGTCTTACACG-AAATCA-AATATCGATGC
23278432 AACGCCCCAA
Statistics
Matches: 59, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
42 22 0.37
43 31 0.53
44 6 0.10
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATATCGATGCCATTGTCCCAGAAA
Found at i:23282074 original size:43 final size:43
Alignment explanation
Indices: 23281963--23282077 Score: 153
Period size: 43 Copynumber: 2.7 Consensus size: 43
23281953 TGTGTTTTCG
* *
23281963 TGTAAGACCACGTCTGGGACGTTGGCA-TCATATTTGATTTCA
1 TGTAAGACCACGTCTGGGACGTTGGCATTGATATTTGATTACA
* **
23282005 TGTAAGACC-CTATCTGGGACAATGGCATTGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACGTTGGCATTGATATTTGATTACA
*
23282048 TGTAAGACCACGTCTAGGACGTTGGCATTG
1 TGTAAGACCACGTCTGGGACGTTGGCATTG
23282078 TACAAACTTT
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
41 1 0.02
42 22 0.36
43 37 0.61
44 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATTGATATTTGATTACA
Found at i:23282795 original size:34 final size:34
Alignment explanation
Indices: 23282712--23282796 Score: 109
Period size: 34 Copynumber: 2.5 Consensus size: 34
23282702 GGTCATTTTG
* *
23282712 GGTAAGATTGTGGTAAGTGCTTATTTTGGAGTTT
1 GGTAAGATTGTGGTATGTGCTTATTTTGGAGATT
* *
23282746 GGTAAGTTTTTGGTATGTGCTTAATTTTGGA-ATT
1 GGTAAGATTGTGGTATGTGCTT-ATTTTGGAGATT
*
23282780 GGTAAGAATGTGGTATG
1 GGTAAGATTGTGGTATG
23282797 AAATTGAATA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
34 35 0.81
35 8 0.19
ACGTcount: A:0.22, C:0.02, G:0.32, T:0.44
Consensus pattern (34 bp):
GGTAAGATTGTGGTATGTGCTTATTTTGGAGATT
Found at i:23287014 original size:20 final size:20
Alignment explanation
Indices: 23286989--23287026 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
23286979 GTCACATATA
23286989 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
* *
23287009 TCATGAGCTCAGATCACA
1 TCATGAACTCAGACCACA
23287027 GAGTTCCTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:23289664 original size:35 final size:35
Alignment explanation
Indices: 23289625--23289700 Score: 93
Period size: 35 Copynumber: 2.2 Consensus size: 35
23289615 AATTTAATTT
23289625 ATATTTT-ATTATCTGATT-TAAATATAATTTGTAAA
1 ATATTTTGA-TATCTGATTATAAATATAATTT-TAAA
* * *
23289660 ATATTTTGATATTTTATTATGAATATAATTTTAAA
1 ATATTTTGATATCTGATTATAAATATAATTTTAAA
23289695 ATATTT
1 ATATTT
23289701 AAATTTTATT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
35 24 0.67
36 12 0.33
ACGTcount: A:0.39, C:0.01, G:0.05, T:0.54
Consensus pattern (35 bp):
ATATTTTGATATCTGATTATAAATATAATTTTAAA
Found at i:23291466 original size:26 final size:26
Alignment explanation
Indices: 23291409--23291478 Score: 70
Period size: 26 Copynumber: 2.7 Consensus size: 26
23291399 AATTTTCTTG
* * *
23291409 AAATTTTACCA-GGGAAAAATTGTCA
1 AAATTTTACTAGGGGTAAAATCGTCA
* *
23291434 AATTTTTACTAGGGGTAAAATCGTTA
1 AAATTTTACTAGGGGTAAAATCGTCA
* *
23291460 AAATTTTATTGGGGGTAAA
1 AAATTTTACTAGGGGTAAA
23291479 GTAGGGATGA
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
25 9 0.25
26 27 0.75
ACGTcount: A:0.39, C:0.07, G:0.20, T:0.34
Consensus pattern (26 bp):
AAATTTTACTAGGGGTAAAATCGTCA
Found at i:23294584 original size:27 final size:27
Alignment explanation
Indices: 23294561--23294701 Score: 153
Period size: 27 Copynumber: 5.3 Consensus size: 27
23294551 GGTAAAATAG
* *
23294561 TCATCTTACCATAAAAGGGCAAAACAA
1 TCATTTTACCACAAAAGGGCAAAACAA
* *
23294588 TCATTTTACCCCATAAGGGCAAAACAA
1 TCATTTTACCACAAAAGGGCAAAACAA
* *
23294615 TCATTTTACCCCATAAGGGCAAAACAA
1 TCATTTTACCACAAAAGGGCAAAACAA
* *
23294642 TCATTTTACCACATAAA-GGCAAAATAG
1 TCATTTTACCACA-AAAGGGCAAAACAA
* * *
23294669 TCATTTTA-C-CATAAGGGCAAAATAG
1 TCATTTTACCACAAAAGGGCAAAACAA
23294694 TCATTTTA
1 TCATTTTA
23294702 TCGATTAAGG
Statistics
Matches: 103, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
24 2 0.02
25 20 0.19
26 1 0.01
27 78 0.76
28 2 0.02
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26
Consensus pattern (27 bp):
TCATTTTACCACAAAAGGGCAAAACAA
Found at i:23294634 original size:54 final size:52
Alignment explanation
Indices: 23294561--23294701 Score: 183
Period size: 54 Copynumber: 2.6 Consensus size: 52
23294551 GGTAAAATAG
* * *
23294561 TCATCTTACCATAAAAGGGCAAAACAATCATTTTACCCCATAAGGGCAAAACAA
1 TCATTTTACCAT--AAGGGCAAAACAATCATTTTACCACATAAAGGCAAAACAA
* *
23294615 TCATTTTACCCCATAAGGGCAAAACAATCATTTTACCACATAAAGGCAAAATAG
1 TCATTTTA--CCATAAGGGCAAAACAATCATTTTACCACATAAAGGCAAAACAA
* *
23294669 TCATTTTACCATAAGGGCAAAATAGTCATTTTA
1 TCATTTTACCATAAGGGCAAAACAATCATTTTA
23294702 TCGATTAAGG
Statistics
Matches: 78, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
52 23 0.29
54 51 0.65
56 4 0.05
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26
Consensus pattern (52 bp):
TCATTTTACCATAAGGGCAAAACAATCATTTTACCACATAAAGGCAAAACAA
Found at i:23294844 original size:18 final size:18
Alignment explanation
Indices: 23294818--23294859 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
23294808 CATATTGCGG
23294818 GCCCATGTGGGCCCATAT-
1 GCCCATGT-GGCCCATATA
*
23294836 GCCCGTGTGGCCCATATA
1 GCCCATGTGGCCCATATA
23294854 GCCCAT
1 GCCCAT
23294860 AAATGGCCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.17, C:0.36, G:0.26, T:0.21
Consensus pattern (18 bp):
GCCCATGTGGCCCATATA
Found at i:23299764 original size:23 final size:23
Alignment explanation
Indices: 23299710--23299875 Score: 262
Period size: 23 Copynumber: 7.1 Consensus size: 23
23299700 CCTAGCCTCT
*
23299710 TTTAGTAACTGGGGCA-AAGCCC
1 TTTAATAACTGGGGCATAAGCCC
23299732 TGTTTAATAACTGGGGCATAAGCCC
1 --TTTAATAACTGGGGCATAAGCCC
23299757 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
23299780 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
23299804 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
23299827 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
23299850 TTTAATAATTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
23299873 TTT
1 TTT
23299876 TTCACTTCCT
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
23 92 0.68
24 37 0.27
25 6 0.04
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:23299768 original size:47 final size:47
Alignment explanation
Indices: 23299710--23299876 Score: 275
Period size: 47 Copynumber: 3.6 Consensus size: 47
23299700 CCTAGCCTCT
*
23299710 TTTAGTAACTGGGGCA-AAGCCCTGTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCT-TTTAATAACTGGGGCATAAGCCC
*
23299757 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
23299804 TTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
* *
23299850 TTTAATAATTAGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
23299877 TCACTTCCTC
Statistics
Matches: 113, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
46 43 0.38
47 63 0.56
48 7 0.06
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:23299819 original size:70 final size:69
Alignment explanation
Indices: 23299690--23299875 Score: 268
Period size: 70 Copynumber: 2.6 Consensus size: 69
23299680 CTTTATCATT
*
23299690 TAACTGGAGGCCT-AGCCTCTTTTAGTAACTGGGGCA-AAGCCCTGTTTAATAACTGGGGCATAA
1 TAACTGG-GGCATAAGCC-CTTTTA-TAACTGGGGCATAAGCCC--TTTAATAACTGGGGCATAA
23299753 GCCCTTTAA
61 GCCCTTTAA
23299762 TAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCC
1 TAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCC
23299827 TTTAA
65 TTTAA
* * *
23299832 TAACTGGGGCATAAGCCCTTTAATAATTAGGGCATAAGCCCTTT
1 TAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTT
23299876 TTCACTTCCT
Statistics
Matches: 107, Mismatches: 4, Indels: 9
0.89 0.03 0.08
Matches are distributed among these distances:
69 20 0.19
70 49 0.46
71 20 0.19
72 18 0.17
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (69 bp):
TAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCT
TTAA
Found at i:23299951 original size:20 final size:20
Alignment explanation
Indices: 23299926--23299992 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
23299916 TTATGAATAC
23299926 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
23299946 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
23299966 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
23299986 ACCATGT
1 ATCATGT
23299993 TTTTCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:23299957 original size:11 final size:11
Alignment explanation
Indices: 23299926--23299981 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
23299916 TTATGAATAC
23299926 ATCATGTGCAT
1 ATCATGTGCAT
*
23299937 ATCA--TACAT
1 ATCATGTGCAT
23299946 ATCATGTGCAT
1 ATCATGTGCAT
*
23299957 ATCA--TACAT
1 ATCATGTGCAT
*
23299966 GTCATGTGCAT
1 ATCATGTGCAT
23299977 ATCAT
1 ATCAT
23299982 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:23300071 original size:25 final size:25
Alignment explanation
Indices: 23300029--23300076 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
23300019 ATATTTAAAC
* * *
23300029 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
23300054 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
23300077 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:23301226 original size:18 final size:19
Alignment explanation
Indices: 23301195--23301230 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
23301185 CTAGGGAAGA
23301195 AAAAACAAAAGAGAAAACT
1 AAAAACAAAAGAGAAAACT
*
23301214 AAAAA-AAAGGAGAAAAC
1 AAAAACAAAAGAGAAAAC
23301231 GGCACAGCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.75, C:0.08, G:0.14, T:0.03
Consensus pattern (19 bp):
AAAAACAAAAGAGAAAACT
Found at i:23307908 original size:23 final size:23
Alignment explanation
Indices: 23307854--23308018 Score: 262
Period size: 23 Copynumber: 7.1 Consensus size: 23
23307844 CCTAGCCTCT
*
23307854 TTTAGTAACTGGGGCA-AAGCCC
1 TTTAATAACTGGGGCATAAGCCC
23307876 TTTTTAATAACTGGGGCATAAGCCC
1 --TTTAATAACTGGGGCATAAGCCC
23307901 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
23307924 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
23307948 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
23307971 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
23307994 TTTAATAA-TTGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
23308016 TTT
1 TTT
23308019 TCACTTCCTC
Statistics
Matches: 135, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
22 16 0.12
23 76 0.56
24 37 0.27
25 6 0.04
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:23307913 original size:47 final size:47
Alignment explanation
Indices: 23307854--23308019 Score: 275
Period size: 47 Copynumber: 3.6 Consensus size: 47
23307844 CCTAGCCTCT
*
23307854 TTTAGTAACTGGGGCA-AAGCCCTTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAGCCC
*
23307901 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
23307948 TTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
23307994 TTTAATAA-TTGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
23308020 CACTTCCTCC
Statistics
Matches: 113, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
45 13 0.12
46 33 0.29
47 61 0.54
48 6 0.05
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:23307964 original size:70 final size:69
Alignment explanation
Indices: 23307833--23308018 Score: 270
Period size: 70 Copynumber: 2.7 Consensus size: 69
23307823 GCTTTATCAT
*
23307833 ATAACTGGAGGCCT-AGCCTCTTTTAGTAACTGGGGCA-AAGCCCTTTTTAATAACTGGGGCATA
1 ATAACTGG-GGCATAAGCC-CTTTTA-TAACTGGGGCATAAGCCC--TTTAATAACTGGGGCATA
23307896 AGCCCTTTA
61 AGCCCTTTA
23307905 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
23307970 CTTTA
65 CTTTA
* *
23307975 ATAACTGGGGCATAAGCCCTTTAATAA-TTGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTT
23308019 TCACTTCCTC
Statistics
Matches: 108, Mismatches: 3, Indels: 10
0.89 0.02 0.08
Matches are distributed among these distances:
68 16 0.15
69 4 0.04
70 49 0.45
71 20 0.19
72 19 0.18
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (69 bp):
ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCC
TTTA
Found at i:23308093 original size:20 final size:20
Alignment explanation
Indices: 23308068--23308134 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
23308058 TTATGAATAC
23308068 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
23308088 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
23308108 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
23308128 ACCATGT
1 ATCATGT
23308135 TTTTCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:23308099 original size:11 final size:11
Alignment explanation
Indices: 23308068--23308123 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
23308058 TTATGAATAC
23308068 ATCATGTGCAT
1 ATCATGTGCAT
*
23308079 ATCA--TACAT
1 ATCATGTGCAT
23308088 ATCATGTGCAT
1 ATCATGTGCAT
*
23308099 ATCA--TACAT
1 ATCATGTGCAT
*
23308108 GTCATGTGCAT
1 ATCATGTGCAT
23308119 ATCAT
1 ATCAT
23308124 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:23308210 original size:25 final size:25
Alignment explanation
Indices: 23308171--23308218 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
23308161 ATATTTAAAC
* *
23308171 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
23308196 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
23308219 CATGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:23309360 original size:18 final size:18
Alignment explanation
Indices: 23309337--23309371 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
23309327 TAGGGAAGAA
23309337 AAAACAAAAGAGAAAACT
1 AAAACAAAAGAGAAAACT
*
23309355 AAAACAAAGGAGAAAAC
1 AAAACAAAAGAGAAAAC
23309372 GGCACAGCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.71, C:0.11, G:0.14, T:0.03
Consensus pattern (18 bp):
AAAACAAAAGAGAAAACT
Found at i:23313856 original size:6 final size:6
Alignment explanation
Indices: 23313838--23313919 Score: 53
Period size: 6 Copynumber: 13.3 Consensus size: 6
23313828 AAGAAACATT
* *
23313838 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATTAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* * *
23313887 ATCAGT ATCAGGTA A-CAGA ACCAAA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
23313920 GTGAATGCAA
Statistics
Matches: 59, Mismatches: 9, Indels: 16
0.70 0.11 0.19
Matches are distributed among these distances:
5 4 0.07
6 46 0.78
7 7 0.12
8 2 0.03
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:23313881 original size:31 final size:31
Alignment explanation
Indices: 23313840--23313919 Score: 115
Period size: 31 Copynumber: 2.6 Consensus size: 31
23313830 GAAACATTAT
*
23313840 CAGAACTAGAATCAGAATCAGAATCAGGTGA
1 CAGAACTAGAATCAGAATCAGAATCAGGTAA
* *
23313871 CAGAATTAGAATCAGAATCAGTATCAGGTAA
1 CAGAACTAGAATCAGAATCAGAATCAGGTAA
* *
23313902 CAGAACCAAAATCAGAAT
1 CAGAACTAGAATCAGAAT
23313920 GTGAATGCAA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.17
Consensus pattern (31 bp):
CAGAACTAGAATCAGAATCAGAATCAGGTAA
Found at i:23314143 original size:71 final size:67
Alignment explanation
Indices: 23314065--23314198 Score: 169
Period size: 67 Copynumber: 1.9 Consensus size: 67
23314055 TCACTAGATA
* * *
23314065 CAGATATTATGGCTAGGACACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGCAACGA
1 CAGATATTATGACGAAGACACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTGCAACGA
23314130 GGCTAC
62 GGCTAC
* * * *
23314136 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGG
1 CAGATATTATGACGAAGACACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAACGAGG
23314199 TTGCCAGAAC
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
67 32 0.57
71 24 0.43
ACGTcount: A:0.34, C:0.21, G:0.27, T:0.19
Consensus pattern (67 bp):
CAGATATTATGACGAAGACACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAACGAGGCT
AC
Found at i:23314184 original size:27 final size:26
Alignment explanation
Indices: 23314136--23314187 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
23314126 ACGAGGCTAC
*
23314136 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
23314162 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
23314188 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:23314454 original size:27 final size:27
Alignment explanation
Indices: 23314424--23314753 Score: 345
Period size: 27 Copynumber: 12.2 Consensus size: 27
23314414 AACACCCTAG
*
23314424 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
* *
23314451 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
* *
23314478 TGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
* ** * *
23314505 GTGTAAAACAGTAATTCTGTCAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
* * **
23314532 GGGTAAAACGGTAATTCTGTAAATAAA
1 GGGTAAAATGGTAATTTTGTAAATCGA
*
23314559 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
* *
23314586 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
** * * *
23314613 GGGTAAAATAATAATTCTATAAATCAA
1 GGGTAAAATGGTAATTTTGTAAATCGA
* *
23314640 TGGTAAAATGATAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
* * *
23314667 GGGTAAAATGATAATTTTATAAATCAA
1 GGGTAAAATGGTAATTTTGTAAATCGA
** * **
23314694 GGGTAAAACAGTAATTATGTAAATTAA
1 GGGTAAAATGGTAATTTTGTAAATCGA
* *
23314721 GGGTAAAATAGTAATTTTTGTAATTCGA
1 GGGTAAAATGGTAA-TTTTGTAAATCGA
23314749 GGGTA
1 GGGTA
23314754 CTTTGATAAT
Statistics
Matches: 255, Mismatches: 47, Indels: 1
0.84 0.16 0.00
Matches are distributed among these distances:
27 241 0.95
28 14 0.05
ACGTcount: A:0.42, C:0.06, G:0.20, T:0.32
Consensus pattern (27 bp):
GGGTAAAATGGTAATTTTGTAAATCGA
Found at i:23314564 original size:81 final size:81
Alignment explanation
Indices: 23314424--23314753 Score: 394
Period size: 81 Copynumber: 4.1 Consensus size: 81
23314414 AACACCCTAG
** * * ** * *
23314424 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGATGGTAAAATAG
1 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATAG
23314489 TAATTTTGTAAATCGA
66 TAATTTTGTAAATCGA
* * * * *
23314505 GTGTAAAACAGTAATTCTGTCAATCGAGGGTAAAACGGTAATTCTGTAAATAAAGGGTAAAATAG
1 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATAG
23314570 TAATTTTGTAAATCGA
66 TAATTTTGTAAATCGA
* * * *
23314586 GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAATAATTCTATAAATCAATGGTAAAAT-G
1 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATAG
23314650 ATAATTTTGTAAATCGA
66 -TAATTTTGTAAATCGA
* * * * * * *
23314667 GGGTAAAA-TGATAATTTTATAAATCAAGGGTAAAACAGTAATTATGTAAATTAAGGGTAAAATA
1 GGGTAAAACAG-TAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATA
*
23314731 GTAATTTTTGTAATTCGA
65 GTAA-TTTTGTAAATCGA
23314749 GGGTA
1 GGGTA
23314754 CTTTGATAAT
Statistics
Matches: 214, Mismatches: 31, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
80 2 0.01
81 194 0.91
82 18 0.08
ACGTcount: A:0.42, C:0.06, G:0.20, T:0.32
Consensus pattern (81 bp):
GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATAG
TAATTTTGTAAATCGA
Found at i:23314766 original size:27 final size:28
Alignment explanation
Indices: 23314730--23314846 Score: 86
Period size: 27 Copynumber: 4.3 Consensus size: 28
23314720 AGGGTAAAAT
*
23314730 AGTAATTTTTGTAAT-TCGAGGGTACTTTG
1 AGTAA-TTTTGTAATATCGAGGGTA-TTTC
23314759 A-TAA-TTT-TACATATCGAGGGTATTTC
1 AGTAATTTTGTA-ATATCGAGGGTATTTC
23314785 AGTAATTTTGTAA-A-CTGAGGGTATTTC
1 AGTAATTTTGTAATATC-GAGGGTATTTC
* ** * *
23314812 GGTAATTTTACAA-ATCGAGGATATTTG
1 AGTAATTTTGTAATATCGAGGGTATTTC
*
23314839 GGTAATTT
1 AGTAATTT
23314847 CATAAACCGG
Statistics
Matches: 75, Mismatches: 6, Indels: 16
0.77 0.06 0.16
Matches are distributed among these distances:
25 2 0.03
26 10 0.13
27 52 0.69
28 8 0.11
29 3 0.04
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (28 bp):
AGTAATTTTGTAATATCGAGGGTATTTC
Found at i:23314818 original size:54 final size:53
Alignment explanation
Indices: 23314730--23314907 Score: 175
Period size: 54 Copynumber: 3.3 Consensus size: 53
23314720 AGGGTAAAAT
* *
23314730 AGTAATTTTTGT-AATTCGAGGGTACTTTGATAATTTTACATATCGAGGGTATTTC
1 AGTAA-TTTTGTAAACT-GAGGGTACTTTGGTAATTTTACA-ATCGAGGGTATTTC
* *
23314785 AGTAATTTTGTAAACTGAGGGTA-TTTCGGTAATTTTACAAATCGAGGATATTTG
1 AGTAATTTTGTAAACTGAGGGTACTTT-GGTAATTTTAC-AATCGAGGGTATTTC
* ** * *
23314839 GGTAATTTCATAAACCGGGGGTACTTTGGTAATTTTACAA-CTG-GTGGTATTTC
1 AGTAATTTTGTAAACTGAGGGTACTTTGGTAATTTTACAATC-GAG-GGTATTTC
*
23314892 AGTAATTTGGTAAACT
1 AGTAATTTTGTAAACT
23314908 AAAGTATTCT
Statistics
Matches: 102, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
52 2 0.02
53 24 0.24
54 64 0.63
55 12 0.12
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.40
Consensus pattern (53 bp):
AGTAATTTTGTAAACTGAGGGTACTTTGGTAATTTTACAATCGAGGGTATTTC
Found at i:23314896 original size:26 final size:25
Alignment explanation
Indices: 23314776--23314899 Score: 74
Period size: 27 Copynumber: 4.7 Consensus size: 25
23314766 TACATATCGA
* *
23314776 GGGTATTTCAGTAATTTTGTAAACTG
1 GGGTATTTCGGTAA-TTTATAAACTG
*
23314802 AGGGTATTTCGGTAATTT-TACAAATCG
1 -GGGTATTTCGGTAATTTATA-AACT-G
* * *
23314829 AGGATATTTGGGTAATTTCATAAACCGG
1 -GGGTATTTCGGTAATTT-ATAAA-CTG
23314857 GGGTACTTT-GGTAATTT-TACAACTG
1 GGGTA-TTTCGGTAATTTATA-AACTG
*
23314882 GTGGTATTTCAGTAATTT
1 G-GGTATTTCGGTAATTT
23314900 GGTAAACTAA
Statistics
Matches: 79, Mismatches: 9, Indels: 19
0.74 0.08 0.18
Matches are distributed among these distances:
25 10 0.13
26 19 0.24
27 42 0.53
28 6 0.08
29 2 0.03
ACGTcount: A:0.27, C:0.10, G:0.23, T:0.40
Consensus pattern (25 bp):
GGGTATTTCGGTAATTTATAAACTG
Found at i:23315510 original size:27 final size:27
Alignment explanation
Indices: 23315480--23315809 Score: 338
Period size: 27 Copynumber: 12.2 Consensus size: 27
23315470 AACACCCTAG
** *
23315480 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
** * *
23315507 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
23315534 TGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
23315561 GTGTAAAACAGTAATTCTGTCAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
23315588 GGGTAAAACGGTAATTCTGTAAATAGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
23315615 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * **
23315642 GGGTAAAACGGTAATTCTGTAAATTTA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * * *
23315669 GGGTAAAATAATAATTCTATAAATCAA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
23315696 TGGTAAAAC-GATAATTTTGTAAATCGA
1 GGGTAAAACAG-TAATTTTGTAAATCGA
* * *
23315723 GGGTAAAACGGTAATTTTATAAATCAA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
23315750 GGGTAAAACAGTAATTATGTAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
23315777 GGGTAAAATAGTAATTTTTGTAATTCGA
1 GGGTAAAACAGTAA-TTTTGTAAATCGA
23315805 GGGTA
1 GGGTA
23315810 CTTTGATAAT
Statistics
Matches: 253, Mismatches: 47, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
27 237 0.94
28 16 0.06
ACGTcount: A:0.41, C:0.06, G:0.21, T:0.32
Consensus pattern (27 bp):
GGGTAAAACAGTAATTTTGTAAATCGA
Found at i:23315620 original size:81 final size:81
Alignment explanation
Indices: 23315480--23315809 Score: 394
Period size: 81 Copynumber: 4.1 Consensus size: 81
23315470 AACACCCTAG
* * * ** * *
23315480 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGATGGTAAAATAG
1 GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATAGAGGGTAAAATAG
23315545 TAATTTTGTAAATCGA
66 TAATTTTGTAAATCGA
* * * * *
23315561 GTGTAAAACAGTAATTCTGTCAATCGAGGGTAAAACGGTAATTCTGTAAATAGAGGGTAAAATAG
1 GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATAGAGGGTAAAATAG
23315626 TAATTTTGTAAATCGA
66 TAATTTTGTAAATCGA
** * * * *
23315642 GGGTAAAACGGTAATTCTGTAAATTTAGGGTAAAATAATAATTCTATAAATCA-ATGGTAAAA-C
1 GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAAT-AGAGGGTAAAATA
23315705 GATAATTTTGTAAATCGA
65 G-TAATTTTGTAAATCGA
* * * * * *
23315723 GGGTAAAACGGTAATTTTATAAATCAAGGGTAAAACAGTAATTATGTAAATTGAGGGTAAAATAG
1 GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATAGAGGGTAAAATAG
*
23315788 TAATTTTTGTAATTCGA
66 TAA-TTTTGTAAATCGA
23315805 GGGTA
1 GGGTA
23315810 CTTTGATAAT
Statistics
Matches: 211, Mismatches: 33, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
80 1 0.00
81 191 0.91
82 19 0.09
ACGTcount: A:0.41, C:0.06, G:0.21, T:0.32
Consensus pattern (81 bp):
GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATAGAGGGTAAAATAG
TAATTTTGTAAATCGA
Found at i:23315794 original size:54 final size:54
Alignment explanation
Indices: 23315480--23315792 Score: 374
Period size: 54 Copynumber: 5.8 Consensus size: 54
23315470 AACACCCTAG
* * *
23315480 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGA
* ** * * * *
23315534 TGGTAAAATAGTAATTTTGTAAATCGAGTGTAAAACAGTAATTCTGTCAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGA
* * * *
23315588 GGGTAAAACGGTAATTCTGTAAATAGAGGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGA
* ** * *
23315642 GGGTAAAACGGTAATTCTGTAAATTTAGGGTAAAATAATAATTCTATAAATCAA
1 GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGA
* * ** * *
23315696 TGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCAA
1 GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGA
* * *
23315750 GGGTAAAACAGTAATTATGTAAATTGAGGGTAAAATAGTAATT
1 GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAGTAATT
23315793 TTTGTAATTC
Statistics
Matches: 220, Mismatches: 39, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 220 1.00
ACGTcount: A:0.42, C:0.06, G:0.20, T:0.31
Consensus pattern (54 bp):
GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGA
Found at i:23315822 original size:27 final size:28
Alignment explanation
Indices: 23315786--23315876 Score: 84
Period size: 27 Copynumber: 3.3 Consensus size: 28
23315776 AGGGTAAAAT
*
23315786 AGTAATTTTTGTAAT-TCGAGGGTACTTTG
1 AGTAA-TTTTGTAATGTCGAGGGTA-TTTC
23315815 A-TAA-TTT-TACATGTCGAGGGTATTTC
1 AGTAATTTTGTA-ATGTCGAGGGTATTTC
**
23315841 AGTAATTTTGTAAACT-GAGGGTATTTC
1 AGTAATTTTGTAATGTCGAGGGTATTTC
*
23315868 GGTAATTTT
1 AGTAATTTT
23315877 ACAAATCGAG
Statistics
Matches: 53, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
25 2 0.04
26 9 0.17
27 31 0.58
28 8 0.15
29 3 0.06
ACGTcount: A:0.26, C:0.08, G:0.22, T:0.44
Consensus pattern (28 bp):
AGTAATTTTGTAATGTCGAGGGTATTTC
Found at i:23315874 original size:54 final size:54
Alignment explanation
Indices: 23315786--23315963 Score: 193
Period size: 54 Copynumber: 3.3 Consensus size: 54
23315776 AGGGTAAAAT
* * **
23315786 AGTAATTTTTGT-AATTCGAGGGTACTTTGATAATTTTACATGTCGAGGGTATTTC
1 AGTAA-TTTTGTAAACT-GAGGGTACTTTGGTAATTTTACAAATCGAGGGTATTTC
* *
23315841 AGTAATTTTGTAAACTGAGGGTA-TTTCGGTAATTTTACAAATCGAGGATATTTG
1 AGTAATTTTGTAAACTGAGGGTACTTT-GGTAATTTTACAAATCGAGGGTATTTC
* * * *
23315895 GGTAATTTTATAAACTGGGGGTACTTTGGTAATTTTACAACT-G-GTGGTATTTC
1 AGTAATTTTGTAAACTGAGGGTACTTTGGTAATTTTACAAATCGAG-GGTATTTC
*
23315948 AGTAATTTGGTAAACT
1 AGTAATTTTGTAAACT
23315964 AAAGTATTCT
Statistics
Matches: 104, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
52 1 0.01
53 23 0.22
54 69 0.66
55 11 0.11
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.41
Consensus pattern (54 bp):
AGTAATTTTGTAAACTGAGGGTACTTTGGTAATTTTACAAATCGAGGGTATTTC
Found at i:23315887 original size:27 final size:27
Alignment explanation
Indices: 23315801--23315955 Score: 115
Period size: 27 Copynumber: 5.8 Consensus size: 27
23315791 TTTTTGTAAT
* **
23315801 TCGAGGGTACTTT-GATAATTTTACATG
1 TCGAGGGTA-TTTCGGTAATTTTACAAA
* **
23315828 TCGAGGGTATTTCAGTAATTTTGTAAA
1 TCGAGGGTATTTCGGTAATTTTACAAA
23315855 -CTGAGGGTATTTCGGTAATTTTACAAA
1 TC-GAGGGTATTTCGGTAATTTTACAAA
* * *
23315882 TCGAGGATATTTGGGTAATTTTATAAA
1 TCGAGGGTATTTCGGTAATTTTACAAA
* *
23315909 -CTGGGGGTACTTT-GGTAATTTTACAAC
1 TC-GAGGGTA-TTTCGGTAATTTTACAAA
*
23315936 T-G-GTGGTATTTCAGTAATTT
1 TCGAG-GGTATTTCGGTAATTT
23315956 GGTAAACTAA
Statistics
Matches: 103, Mismatches: 17, Indels: 17
0.75 0.12 0.12
Matches are distributed among these distances:
25 4 0.04
26 17 0.17
27 78 0.76
28 4 0.04
ACGTcount: A:0.27, C:0.09, G:0.23, T:0.41
Consensus pattern (27 bp):
TCGAGGGTATTTCGGTAATTTTACAAA
Found at i:23316566 original size:27 final size:27
Alignment explanation
Indices: 23316536--23316865 Score: 338
Period size: 27 Copynumber: 12.2 Consensus size: 27
23316526 AACACCCTAG
** *
23316536 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
** * *
23316563 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
23316590 TGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
23316617 GTGTAAAACAGTAATTCTGTCAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
23316644 GGGTAAAACGGTAATTCTGTAAATAGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
23316671 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * **
23316698 GGGTAAAACGGTAATTCTGTAAATTTA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * * *
23316725 GGGTAAAATAATAATTCTATAAATCAA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
23316752 TGGTAAAAC-GATAATTTTGTAAATCGA
1 GGGTAAAACAG-TAATTTTGTAAATCGA
* * *
23316779 GGGTAAAACGGTAATTTTATAAATCAA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
23316806 GGGTAAAACAGTAATTATGTAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
23316833 GGGTAAAATAGTAATTTTTGTAATTCGA
1 GGGTAAAACAGTAA-TTTTGTAAATCGA
23316861 GGGTA
1 GGGTA
23316866 CTTTGATAAT
Statistics
Matches: 253, Mismatches: 47, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
27 237 0.94
28 16 0.06
ACGTcount: A:0.41, C:0.06, G:0.21, T:0.32
Consensus pattern (27 bp):
GGGTAAAACAGTAATTTTGTAAATCGA
Found at i:23316676 original size:81 final size:81
Alignment explanation
Indices: 23316536--23316865 Score: 394
Period size: 81 Copynumber: 4.1 Consensus size: 81
23316526 AACACCCTAG
* * * ** * *
23316536 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGATGGTAAAATAG
1 GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATAGAGGGTAAAATAG
23316601 TAATTTTGTAAATCGA
66 TAATTTTGTAAATCGA
* * * * *
23316617 GTGTAAAACAGTAATTCTGTCAATCGAGGGTAAAACGGTAATTCTGTAAATAGAGGGTAAAATAG
1 GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATAGAGGGTAAAATAG
23316682 TAATTTTGTAAATCGA
66 TAATTTTGTAAATCGA
** * * * *
23316698 GGGTAAAACGGTAATTCTGTAAATTTAGGGTAAAATAATAATTCTATAAATCA-ATGGTAAAA-C
1 GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAAT-AGAGGGTAAAATA
23316761 GATAATTTTGTAAATCGA
65 G-TAATTTTGTAAATCGA
* * * * * *
23316779 GGGTAAAACGGTAATTTTATAAATCAAGGGTAAAACAGTAATTATGTAAATTGAGGGTAAAATAG
1 GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATAGAGGGTAAAATAG
*
23316844 TAATTTTTGTAATTCGA
66 TAA-TTTTGTAAATCGA
23316861 GGGTA
1 GGGTA
23316866 CTTTGATAAT
Statistics
Matches: 211, Mismatches: 33, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
80 1 0.00
81 191 0.91
82 19 0.09
ACGTcount: A:0.41, C:0.06, G:0.21, T:0.32
Consensus pattern (81 bp):
GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATAGAGGGTAAAATAG
TAATTTTGTAAATCGA
Found at i:23316850 original size:54 final size:54
Alignment explanation
Indices: 23316536--23316848 Score: 374
Period size: 54 Copynumber: 5.8 Consensus size: 54
23316526 AACACCCTAG
* * *
23316536 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGA
* ** * * * *
23316590 TGGTAAAATAGTAATTTTGTAAATCGAGTGTAAAACAGTAATTCTGTCAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGA
* * * *
23316644 GGGTAAAACGGTAATTCTGTAAATAGAGGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGA
* ** * *
23316698 GGGTAAAACGGTAATTCTGTAAATTTAGGGTAAAATAATAATTCTATAAATCAA
1 GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGA
* * ** * *
23316752 TGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCAA
1 GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGA
* * *
23316806 GGGTAAAACAGTAATTATGTAAATTGAGGGTAAAATAGTAATT
1 GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAGTAATT
23316849 TTTGTAATTC
Statistics
Matches: 220, Mismatches: 39, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 220 1.00
ACGTcount: A:0.42, C:0.06, G:0.20, T:0.31
Consensus pattern (54 bp):
GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGA
Found at i:23316878 original size:27 final size:28
Alignment explanation
Indices: 23316842--23316932 Score: 84
Period size: 27 Copynumber: 3.3 Consensus size: 28
23316832 AGGGTAAAAT
*
23316842 AGTAATTTTTGTAAT-TCGAGGGTACTTTG
1 AGTAA-TTTTGTAATGTCGAGGGTA-TTTC
23316871 A-TAA-TTT-TACATGTCGAGGGTATTTC
1 AGTAATTTTGTA-ATGTCGAGGGTATTTC
**
23316897 AGTAATTTTGTAAACT-GAGGGTATTTC
1 AGTAATTTTGTAATGTCGAGGGTATTTC
*
23316924 GGTAATTTT
1 AGTAATTTT
23316933 ACAAATCGAG
Statistics
Matches: 53, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
25 2 0.04
26 9 0.17
27 31 0.58
28 8 0.15
29 3 0.06
ACGTcount: A:0.26, C:0.08, G:0.22, T:0.44
Consensus pattern (28 bp):
AGTAATTTTGTAATGTCGAGGGTATTTC
Found at i:23316930 original size:54 final size:54
Alignment explanation
Indices: 23316842--23317019 Score: 193
Period size: 54 Copynumber: 3.3 Consensus size: 54
23316832 AGGGTAAAAT
* * **
23316842 AGTAATTTTTGT-AATTCGAGGGTACTTTGATAATTTTACATGTCGAGGGTATTTC
1 AGTAA-TTTTGTAAACT-GAGGGTACTTTGGTAATTTTACAAATCGAGGGTATTTC
* *
23316897 AGTAATTTTGTAAACTGAGGGTA-TTTCGGTAATTTTACAAATCGAGGATATTTG
1 AGTAATTTTGTAAACTGAGGGTACTTT-GGTAATTTTACAAATCGAGGGTATTTC
* * * *
23316951 GGTAATTTTATAAACTGGGGGTACTTTGGTAATTTTACAACT-G-GTGGTATTTC
1 AGTAATTTTGTAAACTGAGGGTACTTTGGTAATTTTACAAATCGAG-GGTATTTC
*
23317004 AGTAATTTGGTAAACT
1 AGTAATTTTGTAAACT
23317020 AAAGTATTCT
Statistics
Matches: 104, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
52 1 0.01
53 23 0.22
54 69 0.66
55 11 0.11
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.41
Consensus pattern (54 bp):
AGTAATTTTGTAAACTGAGGGTACTTTGGTAATTTTACAAATCGAGGGTATTTC
Found at i:23316943 original size:27 final size:27
Alignment explanation
Indices: 23316857--23317011 Score: 115
Period size: 27 Copynumber: 5.8 Consensus size: 27
23316847 TTTTTGTAAT
* **
23316857 TCGAGGGTACTTT-GATAATTTTACATG
1 TCGAGGGTA-TTTCGGTAATTTTACAAA
* **
23316884 TCGAGGGTATTTCAGTAATTTTGTAAA
1 TCGAGGGTATTTCGGTAATTTTACAAA
23316911 -CTGAGGGTATTTCGGTAATTTTACAAA
1 TC-GAGGGTATTTCGGTAATTTTACAAA
* * *
23316938 TCGAGGATATTTGGGTAATTTTATAAA
1 TCGAGGGTATTTCGGTAATTTTACAAA
* *
23316965 -CTGGGGGTACTTT-GGTAATTTTACAAC
1 TC-GAGGGTA-TTTCGGTAATTTTACAAA
*
23316992 T-G-GTGGTATTTCAGTAATTT
1 TCGAG-GGTATTTCGGTAATTT
23317012 GGTAAACTAA
Statistics
Matches: 103, Mismatches: 17, Indels: 17
0.75 0.12 0.12
Matches are distributed among these distances:
25 4 0.04
26 17 0.17
27 78 0.76
28 4 0.04
ACGTcount: A:0.27, C:0.09, G:0.23, T:0.41
Consensus pattern (27 bp):
TCGAGGGTATTTCGGTAATTTTACAAA
Found at i:23317622 original size:27 final size:27
Alignment explanation
Indices: 23317592--23317921 Score: 329
Period size: 27 Copynumber: 12.2 Consensus size: 27
23317582 AACACCCTAG
* *
23317592 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * *
23317619 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
*
23317646 TGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * * *
23317673 GTGTAAAAAAGTAATTCTGTCAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
** * *
23317700 GGGTAAAACGGTAATTCTGTAAATAGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
*
23317727 GGGTAAAATAGTAATTTTGTAAATTGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
** * *
23317754 GGGTAAAACGGTAATTCTGTAAATTGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * * *
23317781 GGGTAAAATAATAATTCTATAAATCAA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* *
23317808 TGGTAAAA-CGATAATTTTGTAAATCGA
1 GGGTAAAATAG-TAATTTTGTAAATCGA
** * **
23317835 GGGTAAAACGGTAATTTTATAAATTAA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * *
23317862 GGGTAAAACAGTAATTATGTAAATTGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
*
23317889 GGGTAAAATAGTAATTTTTGTAATTCGA
1 GGGTAAAATAGTAA-TTTTGTAAATCGA
23317917 GGGTA
1 GGGTA
23317922 CTTTGATAAT
Statistics
Matches: 253, Mismatches: 47, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
27 237 0.94
28 16 0.06
ACGTcount: A:0.41, C:0.05, G:0.21, T:0.32
Consensus pattern (27 bp):
GGGTAAAATAGTAATTTTGTAAATCGA
Found at i:23317732 original size:81 final size:81
Alignment explanation
Indices: 23317592--23317921 Score: 376
Period size: 81 Copynumber: 4.1 Consensus size: 81
23317582 AACACCCTAG
* * * ** * *
23317592 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGATGGTAAAATAG
1 GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATAGAGGGTAAAATAG
23317657 TAATTTTGTAAATCGA
66 TAATTTTGTAAATCGA
* ** * * *
23317673 GTGTAAAAAAGTAATTCTGTCAATCGAGGGTAAAACGGTAATTCTGTAAATAGAGGGTAAAATAG
1 GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATAGAGGGTAAAATAG
*
23317738 TAATTTTGTAAATTGA
66 TAATTTTGTAAATCGA
* * * * *
23317754 GGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATAATAATTCTATAAATCA-ATGGTAAAA-C
1 GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAAT-AGAGGGTAAAATA
23317817 GATAATTTTGTAAATCGA
65 G-TAATTTTGTAAATCGA
* * ** * * *
23317835 GGGTAAAACGGTAATTTTATAAATTAAGGGTAAAACAGTAATTATGTAAATTGAGGGTAAAATAG
1 GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATAGAGGGTAAAATAG
*
23317900 TAATTTTTGTAATTCGA
66 TAA-TTTTGTAAATCGA
23317917 GGGTA
1 GGGTA
23317922 CTTTGATAAT
Statistics
Matches: 210, Mismatches: 34, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
80 1 0.00
81 190 0.90
82 19 0.09
ACGTcount: A:0.41, C:0.05, G:0.21, T:0.32
Consensus pattern (81 bp):
GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATAGAGGGTAAAATAG
TAATTTTGTAAATCGA
Found at i:23317906 original size:54 final size:54
Alignment explanation
Indices: 23317592--23317904 Score: 365
Period size: 54 Copynumber: 5.8 Consensus size: 54
23317582 AACACCCTAG
* * *
23317592 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGA
* ** * * * *
23317646 TGGTAAAATAGTAATTTTGTAAATCGAGTGTAAAAAAGTAATTCTGTCAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGA
* * * * *
23317700 GGGTAAAACGGTAATTCTGTAAATAGAGGGTAAAATAGTAATTTTGTAAATTGA
1 GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGA
* * * *
23317754 GGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATAATAATTCTATAAATCAA
1 GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGA
* * ** * **
23317808 TGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACGGTAATTTTATAAATTAA
1 GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGA
* * *
23317862 GGGTAAAACAGTAATTATGTAAATTGAGGGTAAAATAGTAATT
1 GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAGTAATT
23317905 TTTGTAATTC
Statistics
Matches: 219, Mismatches: 40, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 219 1.00
ACGTcount: A:0.42, C:0.05, G:0.21, T:0.32
Consensus pattern (54 bp):
GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGA
Found at i:23317934 original size:27 final size:28
Alignment explanation
Indices: 23317898--23317988 Score: 84
Period size: 27 Copynumber: 3.3 Consensus size: 28
23317888 AGGGTAAAAT
*
23317898 AGTAATTTTTGTAAT-TCGAGGGTACTTTG
1 AGTAA-TTTTGTAATGTCGAGGGTA-TTTC
23317927 A-TAA-TTT-TACATGTCGAGGGTATTTC
1 AGTAATTTTGTA-ATGTCGAGGGTATTTC
**
23317953 AGTAATTTTGTAAACT-GAGGGTATTTC
1 AGTAATTTTGTAATGTCGAGGGTATTTC
*
23317980 GGTAATTTT
1 AGTAATTTT
23317989 ACAAATCGAG
Statistics
Matches: 53, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
25 2 0.04
26 9 0.17
27 31 0.58
28 8 0.15
29 3 0.06
ACGTcount: A:0.26, C:0.08, G:0.22, T:0.44
Consensus pattern (28 bp):
AGTAATTTTGTAATGTCGAGGGTATTTC
Found at i:23317986 original size:54 final size:54
Alignment explanation
Indices: 23317898--23318075 Score: 175
Period size: 54 Copynumber: 3.3 Consensus size: 54
23317888 AGGGTAAAAT
* * **
23317898 AGTAATTTTTGT-AATTCGAGGGTACTTTGATAATTTTACATGTCGAGGGTATTTC
1 AGTAA-TTTTGTAAACT-GAGGGTACTTTGGTAATTTTACAAATCGAGGGTATTTC
* *
23317953 AGTAATTTTGTAAACTGAGGGTA-TTTCGGTAATTTTACAAATCGAGGATATTTG
1 AGTAATTTTGTAAACTGAGGGTACTTT-GGTAATTTTACAAATCGAGGGTATTTC
* ** * * *
23318007 GGTAATTTCATAAACCGGGGGTACTTTGGTAATTTTACAACT-G-GTGGTATTTC
1 AGTAATTTTGTAAACTGAGGGTACTTTGGTAATTTTACAAATCGAG-GGTATTTC
*
23318060 AGTAATTTGGTAAACT
1 AGTAATTTTGTAAACT
23318076 AAAGTATTCT
Statistics
Matches: 101, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
52 1 0.01
53 22 0.22
54 67 0.66
55 11 0.11
ACGTcount: A:0.28, C:0.10, G:0.22, T:0.40
Consensus pattern (54 bp):
AGTAATTTTGTAAACTGAGGGTACTTTGGTAATTTTACAAATCGAGGGTATTTC
Found at i:23317999 original size:27 final size:27
Alignment explanation
Indices: 23317913--23318067 Score: 113
Period size: 27 Copynumber: 5.8 Consensus size: 27
23317903 TTTTTGTAAT
* **
23317913 TCGAGGGTACTTT-GATAATTTTACATG
1 TCGAGGGTA-TTTCGGTAATTTTACAAA
* **
23317940 TCGAGGGTATTTCAGTAATTTTGTAAA
1 TCGAGGGTATTTCGGTAATTTTACAAA
23317967 -CTGAGGGTATTTCGGTAATTTTACAAA
1 TC-GAGGGTATTTCGGTAATTTTACAAA
* * * *
23317994 TCGAGGATATTTGGGTAATTTCATAAA
1 TCGAGGGTATTTCGGTAATTTTACAAA
* * *
23318021 CCGGGGGTACTTT-GGTAATTTTACAAC
1 TCGAGGGTA-TTTCGGTAATTTTACAAA
*
23318048 T-G-GTGGTATTTCAGTAATTT
1 TCGAG-GGTATTTCGGTAATTT
23318068 GGTAAACTAA
Statistics
Matches: 101, Mismatches: 21, Indels: 13
0.75 0.16 0.10
Matches are distributed among these distances:
25 4 0.04
26 16 0.16
27 77 0.76
28 4 0.04
ACGTcount: A:0.27, C:0.10, G:0.23, T:0.39
Consensus pattern (27 bp):
TCGAGGGTATTTCGGTAATTTTACAAA
Found at i:23318678 original size:27 final size:27
Alignment explanation
Indices: 23318648--23318977 Score: 338
Period size: 27 Copynumber: 12.2 Consensus size: 27
23318638 AACACCCTAG
* *
23318648 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * *
23318675 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
*
23318702 TGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * * *
23318729 GTGTAAAACAGTAATTCTGTCAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
** * *
23318756 GGGTAAAACGGTAATTCTGTAAATAGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
23318783 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
** * **
23318810 GGGTAAAACGGTAATTCTGTAAATTTA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * * *
23318837 GGGTAAAATAATAATTCTATAAATCAA
1 GGGTAAAATAGTAATTTTGTAAATCGA
*
23318864 TGGTAAAAT-GATAATTTTGTAAATCGA
1 GGGTAAAATAG-TAATTTTGTAAATCGA
** * **
23318891 GGGTAAAACGGTAATTTTATAAATTAA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * *
23318918 GGGTAAAACAGTAATTATGTAAATTGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
*
23318945 GGGTAAAATAGTAATTTTTGTAATTCGA
1 GGGTAAAATAGTAA-TTTTGTAAATCGA
23318973 GGGTA
1 GGGTA
23318978 CTTTGATAAT
Statistics
Matches: 253, Mismatches: 47, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
27 237 0.94
28 16 0.06
ACGTcount: A:0.41, C:0.06, G:0.21, T:0.32
Consensus pattern (27 bp):
GGGTAAAATAGTAATTTTGTAAATCGA
Found at i:23318788 original size:81 final size:81
Alignment explanation
Indices: 23318648--23318977 Score: 394
Period size: 81 Copynumber: 4.1 Consensus size: 81
23318638 AACACCCTAG
* * * ** * *
23318648 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGATGGTAAAATAG
1 GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATAGAGGGTAAAATAG
23318713 TAATTTTGTAAATCGA
66 TAATTTTGTAAATCGA
* * * * *
23318729 GTGTAAAACAGTAATTCTGTCAATCGAGGGTAAAACGGTAATTCTGTAAATAGAGGGTAAAATAG
1 GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATAGAGGGTAAAATAG
23318794 TAATTTTGTAAATCGA
66 TAATTTTGTAAATCGA
** * * *
23318810 GGGTAAAACGGTAATTCTGTAAATTTAGGGTAAAATAATAATTCTATAAATCA-ATGGTAAAAT-
1 GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAAT-AGAGGGTAAAATA
23318873 GATAATTTTGTAAATCGA
65 G-TAATTTTGTAAATCGA
* * ** * * *
23318891 GGGTAAAACGGTAATTTTATAAATTAAGGGTAAAACAGTAATTATGTAAATTGAGGGTAAAATAG
1 GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATAGAGGGTAAAATAG
*
23318956 TAATTTTTGTAATTCGA
66 TAA-TTTTGTAAATCGA
23318973 GGGTA
1 GGGTA
23318978 CTTTGATAAT
Statistics
Matches: 214, Mismatches: 30, Indels: 9
0.85 0.12 0.04
Matches are distributed among these distances:
80 1 0.00
81 194 0.91
82 19 0.09
ACGTcount: A:0.41, C:0.06, G:0.21, T:0.32
Consensus pattern (81 bp):
GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATAGAGGGTAAAATAG
TAATTTTGTAAATCGA
Found at i:23318990 original size:27 final size:28
Alignment explanation
Indices: 23318954--23319044 Score: 84
Period size: 27 Copynumber: 3.3 Consensus size: 28
23318944 AGGGTAAAAT
*
23318954 AGTAATTTTTGTAAT-TCGAGGGTACTTTG
1 AGTAA-TTTTGTAATGTCGAGGGTA-TTTC
23318983 A-TAA-TTT-TACATGTCGAGGGTATTTC
1 AGTAATTTTGTA-ATGTCGAGGGTATTTC
**
23319009 AGTAATTTTGTAAACT-GAGGGTATTTC
1 AGTAATTTTGTAATGTCGAGGGTATTTC
*
23319036 GGTAATTTT
1 AGTAATTTT
23319045 ACAAATCGAG
Statistics
Matches: 53, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
25 2 0.04
26 9 0.17
27 31 0.58
28 8 0.15
29 3 0.06
ACGTcount: A:0.26, C:0.08, G:0.22, T:0.44
Consensus pattern (28 bp):
AGTAATTTTGTAATGTCGAGGGTATTTC
Found at i:23319042 original size:54 final size:54
Alignment explanation
Indices: 23318954--23319131 Score: 184
Period size: 54 Copynumber: 3.3 Consensus size: 54
23318944 AGGGTAAAAT
* * **
23318954 AGTAATTTTTGT-AATTCGAGGGTACTTTGATAATTTTACATGTCGAGGGTATTTC
1 AGTAA-TTTTGTAAACT-GAGGGTACTTTGGTAATTTTACAAATCGAGGGTATTTC
* *
23319009 AGTAATTTTGTAAACTGAGGGTA-TTTCGGTAATTTTACAAATCGAGGATATTTG
1 AGTAATTTTGTAAACTGAGGGTACTTT-GGTAATTTTACAAATCGAGGGTATTTC
* * * * *
23319063 GGTAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAACT-G-GTGGTATTTC
1 AGTAATTTTGTAAACTGAGGGTACTTTGGTAATTTTACAAATCGAG-GGTATTTC
*
23319116 AGTAATTTGGTAAACT
1 AGTAATTTTGTAAACT
23319132 AAAGTATTCT
Statistics
Matches: 102, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
52 1 0.01
53 22 0.22
54 68 0.67
55 11 0.11
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.40
Consensus pattern (54 bp):
AGTAATTTTGTAAACTGAGGGTACTTTGGTAATTTTACAAATCGAGGGTATTTC
Found at i:23319055 original size:27 final size:27
Alignment explanation
Indices: 23318969--23319123 Score: 122
Period size: 27 Copynumber: 5.8 Consensus size: 27
23318959 TTTTTGTAAT
* **
23318969 TCGAGGGTACTTT-GATAATTTTACATG
1 TCGAGGGTA-TTTCGGTAATTTTACAAA
* **
23318996 TCGAGGGTATTTCAGTAATTTTGTAAA
1 TCGAGGGTATTTCGGTAATTTTACAAA
23319023 -CTGAGGGTATTTCGGTAATTTTACAAA
1 TC-GAGGGTATTTCGGTAATTTTACAAA
* * *
23319050 TCGAGGATATTTGGGTAATTTTATAAA
1 TCGAGGGTATTTCGGTAATTTTACAAA
* * *
23319077 CCGGGGGTACTTT-GGTAATTTTACAAC
1 TCGAGGGTA-TTTCGGTAATTTTACAAA
*
23319104 T-G-GTGGTATTTCAGTAATTT
1 TCGAG-GGTATTTCGGTAATTT
23319124 GGTAAACTAA
Statistics
Matches: 103, Mismatches: 19, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
25 4 0.04
26 16 0.16
27 79 0.77
28 4 0.04
ACGTcount: A:0.27, C:0.10, G:0.23, T:0.40
Consensus pattern (27 bp):
TCGAGGGTATTTCGGTAATTTTACAAA
Found at i:23324070 original size:27 final size:27
Alignment explanation
Indices: 23324028--23324139 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
23324018 AGGAAGCGTC
* *
23324028 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCACAATTATCTGAT
* *
23324055 CTGGTGACTCTACCACATATT-TCTGTT
1 CTGGTGACTCTGCCACA-ATTATCTGAT
* *
23324082 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGACTCTGCCACAATTATCTG-AT
* *
23324110 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGACTCTGCCACAATTATCTGAT
23324136 CTGG
1 CTGG
23324140 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 8 0.11
27 45 0.63
28 18 0.25
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (27 bp):
CTGGTGACTCTGCCACAATTATCTGAT
Found at i:23324134 original size:54 final size:54
Alignment explanation
Indices: 23324028--23324139 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
23324018 AGGAAGCGTC
*
23324028 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTGTT
* * **
23324082 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTACCACATATATCTGTT
23324136 CTGG
1 CTGG
23324140 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTGTT
Found at i:23327730 original size:46 final size:46
Alignment explanation
Indices: 23327663--23327832 Score: 220
Period size: 46 Copynumber: 3.7 Consensus size: 46
23327653 TGTAACCCGC
23327663 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCAT
*
23327709 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGC-A--T
* *** * *
23327755 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCAT
23327802 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
23327833 TTCGGATGCC
Statistics
Matches: 105, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 62 0.59
47 30 0.29
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCAT
Found at i:23327783 original size:93 final size:93
Alignment explanation
Indices: 23327671--23327842 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
23327661 GCCCATAAGT
*
23327671 GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
23327736 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
23327764 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
23327829 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
23327843 CAAACATCCT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:23330256 original size:15 final size:15
Alignment explanation
Indices: 23330212--23330277 Score: 73
Period size: 15 Copynumber: 4.5 Consensus size: 15
23330202 CATAAAAACC
23330212 GAATAAAG-AATCCA
1 GAATAAAGAAATCCA
* *
23330226 -AGATAGAGAAACCCA
1 GA-ATAAAGAAATCCA
23330241 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
23330256 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
*
23330271 GGATAAA
1 GAATAAA
23330278 AAAAACCCAA
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
13 1 0.02
14 5 0.12
15 36 0.84
16 1 0.02
ACGTcount: A:0.56, C:0.14, G:0.18, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:23335660 original size:15 final size:15
Alignment explanation
Indices: 23335605--23335679 Score: 75
Period size: 15 Copynumber: 5.1 Consensus size: 15
23335595 CAAAGATAAT
*
23335605 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
23335619 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
23335634 GA-AAACCCAGAATA
1 AAGAAATCCAGAATA
23335648 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
23335663 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
23335678 AA
1 AA
23335680 AAAAACCCAA
Statistics
Matches: 50, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
14 19 0.38
15 31 0.62
ACGTcount: A:0.59, C:0.15, G:0.16, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:23338633 original size:92 final size:91
Alignment explanation
Indices: 23338478--23338646 Score: 286
Period size: 92 Copynumber: 1.8 Consensus size: 91
23338468 GCCCATAAGT
*
23338478 GAACTCGGACTCAACTCAACGAGCTCGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
1 GAACTCGGACTCAACTCAACGAGCTCGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
23338543 AGCTC-GATGCCTAGTTACATCTCTC
66 AGCTCGGATGCCTAGTTACATCTCTC
*
23338568 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTC-G-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
23338633 CGAGTTCGGATGCC
64 CGAGCTCGGATGCC
23338647 AACATCCTAG
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
90 25 0.34
91 1 0.01
92 41 0.56
93 6 0.08
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.21
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
AGCTCGGATGCCTAGTTACATCTCTC
Found at i:23338639 original size:46 final size:45
Alignment explanation
Indices: 23338470--23338636 Score: 198
Period size: 46 Copynumber: 3.7 Consensus size: 45
23338460 CCAAACCCGC
*
23338470 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGCATTCGCAT
*
23338514 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-G-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGCATTCGC-A--T
* *** *
23338559 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCAG-CATTCGCAT
23338606 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
23338637 TTCGGATGCC
Statistics
Matches: 103, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
42 1 0.01
43 3 0.03
44 35 0.34
45 5 0.05
46 48 0.47
47 6 0.06
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGCATTCGCAT
Done.