Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 78 of 290
Found at i:23704530 original size:29 final size:29
Alignment explanation
Indices: 23704497--23704596 Score: 79
Period size: 29 Copynumber: 3.7 Consensus size: 29
23704487 CGTATATTTT
*
23704497 AATTTCATCTTCATGCTTTTATTTTCAGA
1 AATTTAATCTTCATGCTTTTATTTTCAGA
* * *
23704526 AATTTAAT-TT--TTCGTATATTTT----
1 AATTTAATCTTCATGCTTTTATTTTCAGA
* *
23704548 AATTTCATCTTCATTCTTTTATTTTCAGA
1 AATTTAATCTTCATGCTTTTATTTTCAGA
**
23704577 AATTTAATCTTTTTGCTTTT
1 AATTTAATCTTCATGCTTTT
23704597 CAGATTTAAA
Statistics
Matches: 53, Mismatches: 11, Indels: 14
0.68 0.14 0.18
Matches are distributed among these distances:
22 7 0.13
23 2 0.04
25 10 0.19
26 9 0.17
28 2 0.04
29 23 0.43
ACGTcount: A:0.24, C:0.13, G:0.05, T:0.58
Consensus pattern (29 bp):
AATTTAATCTTCATGCTTTTATTTTCAGA
Found at i:23704542 original size:51 final size:51
Alignment explanation
Indices: 23704482--23704589 Score: 198
Period size: 51 Copynumber: 2.1 Consensus size: 51
23704472 CTCCCAATAC
23704482 TTTTTCGTATATTTTAATTTCATCTTCATGCTTTTATTTTCAGAAATTTAA
1 TTTTTCGTATATTTTAATTTCATCTTCATGCTTTTATTTTCAGAAATTTAA
*
23704533 TTTTTCGTATATTTTAATTTCATCTTCATTCTTTTATTTTCAGAAATTTAA
1 TTTTTCGTATATTTTAATTTCATCTTCATGCTTTTATTTTCAGAAATTTAA
23704584 TCTTTT
1 T-TTTT
23704590 TGCTTTTCAG
Statistics
Matches: 55, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
51 51 0.93
52 4 0.07
ACGTcount: A:0.24, C:0.12, G:0.05, T:0.59
Consensus pattern (51 bp):
TTTTTCGTATATTTTAATTTCATCTTCATGCTTTTATTTTCAGAAATTTAA
Found at i:23704859 original size:17 final size:15
Alignment explanation
Indices: 23704838--23704877 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 15
23704828 TAATTGAGAT
23704838 ATTAAATTATATAAAA
1 ATTAAA-TATATAAAA
23704854 ATTTAAA-ATATAAAA
1 A-TTAAATATATAAAA
23704869 ATTAAATAT
1 ATTAAATAT
23704878 TGAATTCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 5 0.23
15 11 0.50
16 1 0.05
17 5 0.23
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATTAAATATATAAAA
Found at i:23705506 original size:23 final size:23
Alignment explanation
Indices: 23705480--23705525 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
23705470 GTTAAAAGTG
23705480 AAAAAAAA-TATTTTTTATTTATT
1 AAAAAAAATTA-TTTTTATTTATT
**
23705503 AAAAATTATTATTTTTATTTATT
1 AAAAAAAATTATTTTTATTTATT
23705526 TCTAACCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 18 0.90
24 2 0.10
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (23 bp):
AAAAAAAATTATTTTTATTTATT
Found at i:23705926 original size:20 final size:20
Alignment explanation
Indices: 23705901--23705939 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
23705891 TAAATGTATA
23705901 TTAAAAAAT-TACTAAAAATC
1 TTAAAAAATATA-TAAAAATC
*
23705921 TTAAAAGATATATAAAAAT
1 TTAAAAAATATATAAAAAT
23705940 ACTAATCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.31
Consensus pattern (20 bp):
TTAAAAAATATATAAAAATC
Found at i:23707890 original size:48 final size:46
Alignment explanation
Indices: 23707827--23707960 Score: 153
Period size: 48 Copynumber: 2.8 Consensus size: 46
23707817 GTGATAATTT
*
23707827 TAAATTTTCAATACTATTCGATATTTTTTTAATTTATGCAAATT-TAAA
1 TAAA-TTTCAATACTATT-GATATTTTTTTCATTTATGC-AATTATAAA
* *
23707875 TAAATTTGCAATACTATTTGATATTTTATTCATTTATGCAATTATAAT
1 TAAATTT-CAATACTA-TTGATATTTTTTTCATTTATGCAATTATAAA
* *
23707923 TACAATTTCAATACTGCTTGATTTTTTTTTCATTTATG
1 TA-AATTTCAATACT-ATTGATATTTTTTTCATTTATG
23707961 ATGTTTGCAT
Statistics
Matches: 75, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
47 7 0.09
48 61 0.81
49 7 0.09
ACGTcount: A:0.33, C:0.10, G:0.06, T:0.51
Consensus pattern (46 bp):
TAAATTTCAATACTATTGATATTTTTTTCATTTATGCAATTATAAA
Found at i:23709565 original size:18 final size:18
Alignment explanation
Indices: 23709542--23709579 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
23709532 TGACAGGTGC
*
23709542 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
23709560 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
23709578 GT
1 GT
23709580 TTTTTTTCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.26, G:0.11, T:0.39
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:23713490 original size:16 final size:16
Alignment explanation
Indices: 23713471--23713501 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23713461 CTTCTTCACT
23713471 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
23713487 TACTTACTTACTTAA
1 TACTCACTTACTTAA
23713502 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:23713507 original size:20 final size:20
Alignment explanation
Indices: 23713468--23713507 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
23713458 AAACTTCTTC
* *
23713468 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
23713488 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
23713508 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:23713887 original size:55 final size:53
Alignment explanation
Indices: 23713697--23713952 Score: 213
Period size: 55 Copynumber: 4.8 Consensus size: 53
23713687 ACACGGGTAC
* * * * *
23713697 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* *
23713746 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
* * *
23713799 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AA
* *** *
23713854 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTTCTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* ** *
23713907 CCTTACCAATTGTCATACCTT-AGCATGGTCTTACATGGTATCCTTG
1 -CTTACCAA-TGCCATGTCTTGA-CATGGTCTTACATGGGATCCTTG
23713953 AACCCTAATG
Statistics
Matches: 171, Mismatches: 24, Indels: 18
0.80 0.11 0.08
Matches are distributed among these distances:
49 38 0.22
50 1 0.01
52 2 0.01
53 49 0.29
54 11 0.06
55 69 0.40
56 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
Found at i:23713888 original size:108 final size:110
Alignment explanation
Indices: 23713744--23713944 Score: 291
Period size: 108 Copynumber: 1.8 Consensus size: 110
23713734 ATCCTTTTGA
* *
23713744 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
* *
23713807 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATACCTTAGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * *
23713852 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTTCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
23713917 TGTCATACCTTAGCATGGTCTTACATGG
66 TGCCATACCTTAGCATGGTCTTACATGG
23713945 TATCCTTGAA
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.59
109 7 0.09
110 25 0.31
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATACCTTAGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:23716086 original size:126 final size:126
Alignment explanation
Indices: 23715861--23716494 Score: 1036
Period size: 126 Copynumber: 5.0 Consensus size: 126
23715851 TTATAGCCTC
* *
23715861 ATTTTTCTACGATCTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATGTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
*
23715926 ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAATGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* *
23715987 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCATGTGGGAGCTTTTTCCCGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
*
23716052 ACAGTGCATCCTACTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* *
23716113 ATTTTTCTACAAACTACTGTAGCAAAAGAGCGTCCATGTGGGAGCTTTTTCCAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
* *
23716178 ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTTAGAAACGTCTACTC-GAAATT
66 ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAG-AATT
* * * *
23716239 ATTTTTCTACGAACTACTGTAGTAAAAGAGCGTCCAAGTGAGAGCATTTTCCAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
* * *
23716304 ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCATAAATGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* * *
23716365 ATTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACGTGGGAGCTTTTTCTAGAAATTTTACTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
* * *
23716430 ACAGTGCATCCTGCTTGAAGCGTTTTTCGACACTATTTGTCCAGAAACGTCTGCTCAGAATT
66 ACAGTGCATCCTGCTTGAAGC-ATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
23716492 ATT
1 ATT
23716495 CTTACAGAAA
Statistics
Matches: 474, Mismatches: 31, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
125 1 0.00
126 434 0.92
127 39 0.08
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (126 bp):
ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
Found at i:23717063 original size:20 final size:20
Alignment explanation
Indices: 23717038--23717110 Score: 64
Period size: 20 Copynumber: 3.8 Consensus size: 20
23717028 ACCATTATGT
23717038 ATCAATTAACCCTAAAATTA
1 ATCAATTAACCCTAAAATTA
* * *
23717058 ATCAATTAATCCTAAACCCTAA
1 ATCAATTAACCCTAAA--ATTA
*
23717080 ATCAA-T--CCCT-AATTTA
1 ATCAATTAACCCTAAAATTA
23717096 ATCAATTAACCCTAA
1 ATCAATTAACCCTAA
23717111 TACCCTAAAC
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
16 7 0.17
17 1 0.02
18 2 0.05
19 7 0.17
20 16 0.39
21 1 0.02
22 7 0.17
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.30
Consensus pattern (20 bp):
ATCAATTAACCCTAAAATTA
Found at i:23717131 original size:34 final size:36
Alignment explanation
Indices: 23717055--23717131 Score: 97
Period size: 38 Copynumber: 2.1 Consensus size: 36
23717045 AACCCTAAAA
*
23717055 TTAATCAATTAATCCTAAACCCTAAATCAATCCCTAAT
1 TTAATCAATTAACCCTAAACCCTAAATC-AT-CCTAAT
23717093 TTAATCAATTAACCCTAATACCCTAAA-C-T-CTAAT
1 TTAATCAATTAACCCTAA-ACCCTAAATCATCCTAAT
23717127 TTAAT
1 TTAAT
23717132 ATTTAGTATT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
34 10 0.27
36 1 0.03
38 18 0.49
39 8 0.22
ACGTcount: A:0.42, C:0.25, G:0.00, T:0.34
Consensus pattern (36 bp):
TTAATCAATTAACCCTAAACCCTAAATCATCCTAAT
Found at i:23717201 original size:8 final size:8
Alignment explanation
Indices: 23717188--23717261 Score: 71
Period size: 8 Copynumber: 9.4 Consensus size: 8
23717178 ATTTTTTCCT
23717188 TAAAACCC
1 TAAAACCC
23717196 TAAAACCC
1 TAAAACCC
23717204 TAAAACCC
1 TAAAACCC
* *
23717212 AAAAAACC
1 TAAAACCC
23717220 TAAAACCC
1 TAAAACCC
* *
23717228 AAAAAACC
1 TAAAACCC
* *
23717236 T-TAACCA
1 TAAAACCC
23717243 T-AAACCC
1 TAAAACCC
23717250 TAAAAACCC
1 T-AAAACCC
23717259 TAA
1 TAA
23717262 CCCTAAATCA
Statistics
Matches: 52, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
7 9 0.17
8 36 0.69
9 7 0.13
ACGTcount: A:0.55, C:0.32, G:0.00, T:0.12
Consensus pattern (8 bp):
TAAAACCC
Found at i:23717247 original size:22 final size:22
Alignment explanation
Indices: 23717222--23717268 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
23717212 AAAAAACCTA
*
23717222 AAACCCAAAAAACCTTAACCAT
1 AAACCCAAAAAACCCTAACCAT
* *
23717244 AAACCCTAAAAACCCTAACCCT
1 AAACCCAAAAAACCCTAACCAT
23717266 AAA
1 AAA
23717269 TCAATTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.53, C:0.34, G:0.00, T:0.13
Consensus pattern (22 bp):
AAACCCAAAAAACCCTAACCAT
Found at i:23718532 original size:18 final size:17
Alignment explanation
Indices: 23718499--23718537 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
23718489 TTGTATAAAT
23718499 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
23718517 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
23718534 TGTG
1 TGTG
23718538 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:23718655 original size:8 final size:8
Alignment explanation
Indices: 23718642--23718670 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
23718632 CACTAGAGAC
23718642 CAGTGTTA
1 CAGTGTTA
23718650 CAGTGTTA
1 CAGTGTTA
23718658 CAGTGTTA
1 CAGTGTTA
23718666 CAGTG
1 CAGTG
23718671 AGTCCCGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (8 bp):
CAGTGTTA
Found at i:23718784 original size:23 final size:23
Alignment explanation
Indices: 23718757--23718832 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
23718747 AGTGTTATTG
23718757 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
23718780 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
23718803 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
23718826 ATCAGTG
1 ATCAGTG
23718833 TGGCACTTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:23725864 original size:18 final size:17
Alignment explanation
Indices: 23725831--23725869 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
23725821 TTGTATAAAT
23725831 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
23725849 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
23725866 TGTG
1 TGTG
23725870 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:23725987 original size:8 final size:8
Alignment explanation
Indices: 23725974--23726002 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
23725964 CACTAGAGAC
23725974 CAGTGTTA
1 CAGTGTTA
23725982 CAGTGTTA
1 CAGTGTTA
23725990 CAGTGTTA
1 CAGTGTTA
23725998 CAGTG
1 CAGTG
23726003 AGTCCCGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (8 bp):
CAGTGTTA
Found at i:23726115 original size:23 final size:23
Alignment explanation
Indices: 23726088--23726163 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
23726078 AGTGTTATTG
23726088 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
23726111 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
23726134 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
23726157 ATCAGTG
1 ATCAGTG
23726164 TGGCACTTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:23729788 original size:21 final size:21
Alignment explanation
Indices: 23729764--23729804 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
23729754 TCAAAATGAT
23729764 ATAGTTTAG-CTTTTTAACTTA
1 ATAGTTTAGAC-TTTTAACTTA
*
23729785 ATAGTTTTGACTTTTAACTT
1 ATAGTTTAGACTTTTAACTT
23729805 TAGAAAATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.27, C:0.10, G:0.10, T:0.54
Consensus pattern (21 bp):
ATAGTTTAGACTTTTAACTTA
Found at i:23740552 original size:61 final size:59
Alignment explanation
Indices: 23740419--23740552 Score: 164
Period size: 61 Copynumber: 2.2 Consensus size: 59
23740409 TCAACGTGGG
* * *
23740419 AAATC-AACACGGCCTGGACTTCTTTACACGGGTAGACCACATGCCCTTCTAGTTTTAGC
1 AAATCTAACACGGCCTGGACTTCCTTACACGGGTAGACCACATGCCCTTCTAG-TTCAAC
* *
23740478 AAACTCTAGCACGGCCTGGACTTCCTTACATGGGTAGACCACATGCCCGTGTCTA-TTCAAC
1 AAA-TCTAACACGGCCTGGACTTCCTTACACGGGTAGACCACATGCCC-T-TCTAGTTCAAC
23740539 AGAATCTAACACGG
1 A-AATCTAACACGG
23740553 TTGGAAGCAC
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
59 3 0.05
60 2 0.03
61 52 0.81
62 3 0.05
63 4 0.06
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (59 bp):
AAATCTAACACGGCCTGGACTTCCTTACACGGGTAGACCACATGCCCTTCTAGTTCAAC
Found at i:23743185 original size:30 final size:28
Alignment explanation
Indices: 23743149--23743206 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
23743139 ACTATTGAAG
*
23743149 TATTTTTAGTTTCACACTTTGATACTTAAA
1 TATTTTTAGTCTCA-A-TTTGATACTTAAA
* *
23743179 TATTTTTTGTCTCAATTTGGTACTTAAA
1 TATTTTTAGTCTCAATTTGATACTTAAA
23743207 AAATCAATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 12 0.48
29 1 0.04
30 12 0.48
ACGTcount: A:0.28, C:0.12, G:0.09, T:0.52
Consensus pattern (28 bp):
TATTTTTAGTCTCAATTTGATACTTAAA
Found at i:23743427 original size:29 final size:29
Alignment explanation
Indices: 23743374--23743436 Score: 67
Period size: 29 Copynumber: 2.2 Consensus size: 29
23743364 TATACATTAA
* *
23743374 AAAAATATGAAAAATAGAAATAAATATAT
1 AAAAATATCAAAAATAGAAATAAATATAG
*
23743403 AAAAAT-TCAAAAATA-AACATAAAATCTAG
1 AAAAATATCAAAAATAGAA-AT-AAATATAG
23743432 AAAAA
1 AAAAA
23743437 AAATATATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 2 0.07
28 10 0.34
29 17 0.59
ACGTcount: A:0.70, C:0.05, G:0.05, T:0.21
Consensus pattern (29 bp):
AAAAATATCAAAAATAGAAATAAATATAG
Found at i:23743435 original size:20 final size:20
Alignment explanation
Indices: 23743411--23743457 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
23743401 ATAAAAATTC
23743411 AAAAATAAACATA-AAATCT
1 AAAAATAAACATATAAATCT
* * *
23743430 AGAAAAAAAATATATAAATTT
1 A-AAAATAAACATATAAATCT
23743451 AAAAATA
1 AAAAATA
23743458 TTTTTTAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
19 1 0.05
20 15 0.68
21 6 0.27
ACGTcount: A:0.70, C:0.04, G:0.02, T:0.23
Consensus pattern (20 bp):
AAAAATAAACATATAAATCT
Found at i:23745028 original size:26 final size:26
Alignment explanation
Indices: 23744999--23745050 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
23744989 GAATATATTT
23744999 GATGGAAGATAATTTCAACCAAAAAA
1 GATGGAAGATAATTTCAACCAAAAAA
23745025 GATGGAAGATAATTTCAACCAAAAAA
1 GATGGAAGATAATTTCAACCAAAAAA
23745051 TATCGGCGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.54, C:0.12, G:0.15, T:0.19
Consensus pattern (26 bp):
GATGGAAGATAATTTCAACCAAAAAA
Found at i:23749902 original size:23 final size:22
Alignment explanation
Indices: 23749875--23749924 Score: 84
Period size: 21 Copynumber: 2.3 Consensus size: 22
23749865 TGCCTAAAAT
23749875 GACACACGAGGTGCCTG-ATAC
1 GACACACGAGGTGCCTGAATAC
23749896 GACACACGAGGTGCCTGAAATAC
1 GACACACGAGGTGCCTG-AATAC
23749919 GACACA
1 GACACA
23749925 TAAAGTGCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 17 0.63
23 10 0.37
ACGTcount: A:0.34, C:0.28, G:0.26, T:0.12
Consensus pattern (22 bp):
GACACACGAGGTGCCTGAATAC
Found at i:23749932 original size:23 final size:23
Alignment explanation
Indices: 23749851--23749936 Score: 81
Period size: 21 Copynumber: 3.9 Consensus size: 23
23749841 CTGATCAGAG
*
23749851 TACGACACATAAAGTGCCT-AAA
1 TACGACACACAAAGTGCCTGAAA
* * *
23749873 -ATGACACACGAGGTGCCTG--A
1 TACGACACACAAAGTGCCTGAAA
* *
23749893 TACGACACACGAGGTGCCTGAAA
1 TACGACACACAAAGTGCCTGAAA
*
23749916 TACGACACATAAAGTGCCTGA
1 TACGACACACAAAGTGCCTGA
23749937 TCAGTAAAGC
Statistics
Matches: 52, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
20 1 0.02
21 32 0.62
23 19 0.37
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.16
Consensus pattern (23 bp):
TACGACACACAAAGTGCCTGAAA
Found at i:23750365 original size:15 final size:15
Alignment explanation
Indices: 23750307--23750368 Score: 81
Period size: 15 Copynumber: 4.1 Consensus size: 15
23750297 TCATATATAT
*
23750307 TATATAATTCAATCAA
1 TATA-AATTCAATAAA
23750323 TATAAATTCAATCAAA
1 TATAAATTCAAT-AAA
*
23750339 -ATAATTTCAATAAA
1 TATAAATTCAATAAA
23750353 TATAAATTCAATAAA
1 TATAAATTCAATAAA
23750368 T
1 T
23750369 TCATCGCATA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
14 3 0.07
15 32 0.78
16 6 0.15
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.35
Consensus pattern (15 bp):
TATAAATTCAATAAA
Found at i:23751598 original size:20 final size:21
Alignment explanation
Indices: 23751563--23751602 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
23751553 CTGCTCTCTG
*
23751563 TTTCGTTTCATTTTGTTTCTA
1 TTTCCTTTCATTTTGTTTCTA
23751584 TTTCCTTTC-TTTTGTTTCT
1 TTTCCTTTCATTTTGTTTCT
23751603 TTAGTTTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.05, C:0.17, G:0.07, T:0.70
Consensus pattern (21 bp):
TTTCCTTTCATTTTGTTTCTA
Found at i:23751618 original size:5 final size:5
Alignment explanation
Indices: 23751610--23751641 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
23751600 TCTTTAGTTT
23751610 ATATA ATATA ATATA ATATA ATATA ATATA AT
1 ATATA ATATA ATATA ATATA ATATA ATATA AT
23751642 TAAAACATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:23751677 original size:8 final size:8
Alignment explanation
Indices: 23751664--23751692 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
23751654 TATCTTTATT
23751664 ATATAATA
1 ATATAATA
23751672 ATATAATA
1 ATATAATA
23751680 ATATAATA
1 ATATAATA
23751688 ATATA
1 ATATA
23751693 CTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:23752951 original size:20 final size:20
Alignment explanation
Indices: 23752926--23752963 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
23752916 AAAATAGAGA
23752926 AAATTGAAACTTTAAGTACT
1 AAATTGAAACTTTAAGTACT
* *
23752946 AAATTGGAAGTTTAAGTA
1 AAATTGAAACTTTAAGTA
23752964 TCAAAATGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.05, G:0.16, T:0.34
Consensus pattern (20 bp):
AAATTGAAACTTTAAGTACT
Found at i:23758622 original size:21 final size:21
Alignment explanation
Indices: 23758598--23758638 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
23758588 TCAAAACGAC
*
23758598 ATAGTTTAGCCTTTTAACTTA
1 ATAGTTTAGACTTTTAACTTA
*
23758619 ATAGTTTTGACTTTTAACTT
1 ATAGTTTAGACTTTTAACTT
23758639 TAGAAAATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.12, G:0.10, T:0.51
Consensus pattern (21 bp):
ATAGTTTAGACTTTTAACTTA
Found at i:23764121 original size:30 final size:30
Alignment explanation
Indices: 23764087--23764147 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
23764077 TCCTTAACTC
23764087 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
23764117 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
23764147 A
1 A
23764148 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:23766435 original size:22 final size:23
Alignment explanation
Indices: 23766410--23766464 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
23766400 TGGGTTTGCT
23766410 TTTTTCTTCTATCTTGTT-TT-TG
1 TTTTT-TTCTATCTTGTTGTTATG
23766432 TTTTTTTCT-TCTTGTTGTTATG
1 TTTTTTTCTATCTTGTTGTTATG
*
23766454 TTATTTTCTAT
1 TTTTTTTCTAT
23766465 TTCAATTCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 7 0.24
21 6 0.21
22 15 0.52
23 1 0.03
ACGTcount: A:0.07, C:0.11, G:0.09, T:0.73
Consensus pattern (23 bp):
TTTTTTTCTATCTTGTTGTTATG
Found at i:23768571 original size:32 final size:31
Alignment explanation
Indices: 23768535--23768641 Score: 124
Period size: 32 Copynumber: 3.4 Consensus size: 31
23768525 CGTGGTTCTA
* * *
23768535 TGAAATAATAACAAATATCAGCTTTCATTTTG
1 TGAAATGATAACAAAT-TCAACTTTAATTTTG
* *
23768567 TGAAATGGTAACAAATTACAACTTTAATTTTT
1 TGAAATGATAACAAATT-CAACTTTAATTTTG
*
23768599 TGAAATGATAATAAATGTCAACTTTAATTTTG
1 TGAAATGATAACAAAT-TCAACTTTAATTTTG
*
23768631 TTAAATGATAA
1 TGAAATGATAA
23768642 TAATATTCTT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
31 1 0.02
32 62 0.97
33 1 0.02
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.39
Consensus pattern (31 bp):
TGAAATGATAACAAATTCAACTTTAATTTTG
Found at i:23777768 original size:14 final size:13
Alignment explanation
Indices: 23777748--23777779 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
23777738 AATATTTAAC
23777748 TTGTTCTTAATTA
1 TTGTTCTTAATTA
23777761 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
23777775 TTGTT
1 TTGTT
23777780 TTGATATCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:23781682 original size:6 final size:6
Alignment explanation
Indices: 23781671--23781717 Score: 76
Period size: 6 Copynumber: 7.8 Consensus size: 6
23781661 TTCAAACTAT
* *
23781671 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTCTTA TTCTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
23781718 TAGCAGATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.15, C:0.04, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:23784315 original size:19 final size:19
Alignment explanation
Indices: 23784287--23784325 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
23784277 AGAGCGAAAG
23784287 AAACGAG-AAACGGGCCAA
1 AAACGAGAAAACGGGCCAA
*
23784305 AAACAGAGAAAATGGGCCAA
1 AAAC-GAGAAAACGGGCCAA
23784325 A
1 A
23784326 GTACGAACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 3 0.17
20 11 0.61
ACGTcount: A:0.54, C:0.18, G:0.26, T:0.03
Consensus pattern (19 bp):
AAACGAGAAAACGGGCCAA
Found at i:23784450 original size:52 final size:51
Alignment explanation
Indices: 23784354--23784454 Score: 132
Period size: 52 Copynumber: 2.0 Consensus size: 51
23784344 CTGGACTTCC
23784354 TCACACGGGCAGACCACACGGCCGTGCTAACTTGGCAGAATCGAAGCACGAT
1 TCACACGGGCAGACCACACGGCCGTGCTAACTTGGCAGAATCGAA-CACGAT
* * * **
23784406 TCACACGGGTAGACCACACGGTCGTG-TCAATTTGGCAGGCTCGAACACG
1 TCACACGGGCAGACCACACGGCCGTGCT-AACTTGGCAGAATCGAACACG
23784455 GCCTGAAGTA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
51 5 0.12
52 38 0.88
ACGTcount: A:0.27, C:0.30, G:0.28, T:0.16
Consensus pattern (51 bp):
TCACACGGGCAGACCACACGGCCGTGCTAACTTGGCAGAATCGAACACGAT
Found at i:23784875 original size:14 final size:13
Alignment explanation
Indices: 23784855--23784886 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
23784845 TATTTTTAAC
23784855 TTGTTCTTAATTA
1 TTGTTCTTAATTA
23784868 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
23784882 TTGTT
1 TTGTT
23784887 TTGATATCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:23787467 original size:5 final size:6
Alignment explanation
Indices: 23787430--23787466 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
23787420 TAGAGAGTTG
*
23787430 TTTAAT TTTAAT TTTAAT TTTAGT TTTAA- TTTAAT TT
1 TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TT
23787467 ATTTGTTCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 5 0.18
6 23 0.82
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (6 bp):
TTTAAT
Found at i:23788848 original size:16 final size:16
Alignment explanation
Indices: 23788827--23788860 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
23788817 GAAGATGTAA
23788827 CATGAAAGTTTTGTTT
1 CATGAAAGTTTTGTTT
23788843 CATGAAAGTTTTGTTT
1 CATGAAAGTTTTGTTT
23788859 CA
1 CA
23788861 AAACCCTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.09, G:0.18, T:0.47
Consensus pattern (16 bp):
CATGAAAGTTTTGTTT
Found at i:23809618 original size:34 final size:34
Alignment explanation
Indices: 23809575--23809639 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
23809565 CATCATTTAC
23809575 TGCCAAGCAATAACTCCA-TTGACAATAATAGAAA
1 TGCCAAGCAATAACTCCACTT-ACAATAATAGAAA
23809609 TGCCAAGCAATAACTCCACTTACAATAATAG
1 TGCCAAGCAATAACTCCACTTACAATAATAG
23809640 GCATCCTACC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
34 28 0.93
35 2 0.07
ACGTcount: A:0.45, C:0.23, G:0.11, T:0.22
Consensus pattern (34 bp):
TGCCAAGCAATAACTCCACTTACAATAATAGAAA
Found at i:23814382 original size:21 final size:21
Alignment explanation
Indices: 23814356--23814396 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
23814346 GTGTTGAATA
*
23814356 ATATTTTTTAATAAA-TAATTT
1 ATATTTTGTAA-AAATTAATTT
23814377 ATATTTTGTAAAAATTAATT
1 ATATTTTGTAAAAATTAATT
23814397 AATTATTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (21 bp):
ATATTTTGTAAAAATTAATTT
Found at i:23816819 original size:131 final size:130
Alignment explanation
Indices: 23816643--23817114 Score: 297
Period size: 130 Copynumber: 3.6 Consensus size: 130
23816633 AATAAAGACC
* * * * * *
23816643 TAAAGGAATACTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGATAAGGCATGATTC
1 TAAAGGGATATTCGATTATTTTAAACAAACGAGAAATCACAACCCAACACGATAAGGCACGATCC
* * * * *
23816708 C-CGAATTGTCAAACACC-GAGTATTGCCCTCGTTTTAAAGGATTTTTAGAAGAGC-CGAGTGAA
66 CACGAATTGCCAAACACCAGA-TATCGCCCTCATTTT-AAGGA-TTTTAAAAGA-CACGAGCGAA
23816770 ATTT
127 ATTT
* * * * ** * * *
23816774 TGAAGGGATATTTGATTGTTTTAAACAATCGAGAAATTGCTACCCAACACGTTAGGGCACGATCC
1 TAAAGGGATATTCGATTATTTTAAACAAACGAGAAATCACAACCCAACACGATAAGGCACGATCC
* * *
23816839 CACGAATTGCCAAATACCAGATATCGCCTTCATTTTAGGGATTTTAAAAGACACGAGCGAAATTT
66 CACGAATTGCCAAACACCAGATATCGCCCTCATTTTAAGGATTTTAAAAGACACGAGCGAAATTT
* * * * ** * * *
23816904 TAAAGTGATATTCGATTATTTTGAGCAAA-TACGAAATTGCAACCCAACACGTTAGGGCACGATT
1 TAAAGGGATATTCGATTATTTTAAACAAACGA-GAAATCACAACCCAACACGATAAGGCACGATC
* * * * * * ** * * *** ** *
23816968 TCGCGAATTGCAAAACATCAAATCTCATCTTC-GTTTAAGGGATTTTAAAAGATGTGAATGGAAT
65 CCACGAATTGCCAAACACCAGATATCGCCCTCATTTTAA-GGATTTTAAAAGACACGAGCGAAAT
23817032 TT
129 TT
** * * * * * * ** * *
23817034 CGAAGGGAAATTTGATTATTTTGAGCAAATGCGAAATTGCAACCCAACACGTTAAGGCACGATTC
1 TAAAGGGATATTCGATTATTTTAAACAAACGAGAAATCACAACCCAACACGATAAGGCACGATCC
* *
23817099 CGCGAATTGCCGAACA
66 CACGAATTGCCAAACA
23817115 TCAAATTTCA
Statistics
Matches: 274, Mismatches: 61, Indels: 13
0.79 0.18 0.04
Matches are distributed among these distances:
129 6 0.02
130 185 0.68
131 55 0.20
132 26 0.09
133 2 0.01
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.27
Consensus pattern (130 bp):
TAAAGGGATATTCGATTATTTTAAACAAACGAGAAATCACAACCCAACACGATAAGGCACGATCC
CACGAATTGCCAAACACCAGATATCGCCCTCATTTTAAGGATTTTAAAAGACACGAGCGAAATTT
Found at i:23817130 original size:130 final size:130
Alignment explanation
Indices: 23816767--23817133 Score: 430
Period size: 130 Copynumber: 2.8 Consensus size: 130
23816757 AGAGCCGAGT
* * * * *
23816767 GAAATTTTGAAGGGATATTTGATTGTTTTAAAC-AATCGAGAAATTGCTACCCAACACGTTAGGG
1 GAAATTTTGAAGGGATATTTGATTATTTTGAGCAAAT-GCGAAATTGCAACCCAACACGTTAGGG
* * * * * ** * * *
23816831 CACGATCCCACGAATTGCCAAATACCAGATATCGCCTTCATTTTAGGGATTTTAAAAGACACGAG
65 CACGATTCCGCGAATTGCCAAACATCAAATATCATCTTCGTTTAAGGGATTTTAAAAGACACGAA
23816896 C
130 C
* * * *
23816897 GAAATTTTAAAGTGATATTCGATTATTTTGAGCAAATACGAAATTGCAACCCAACACGTTAGGGC
1 GAAATTTTGAAGGGATATTTGATTATTTTGAGCAAATGCGAAATTGCAACCCAACACGTTAGGGC
* * * *** *
23816962 ACGATTTCGCGAATTGCAAAACATCAAATCTCATCTTCGTTTAAGGGATTTTAAAAGATGTGAAT
66 ACGATTCCGCGAATTGCCAAACATCAAATATCATCTTCGTTTAAGGGATTTTAAAAGACACGAAC
* * * *
23817027 GGAATTTCGAAGGGAAATTTGATTATTTTGAGCAAATGCGAAATTGCAACCCAACACGTTAAGGC
1 GAAATTTTGAAGGGATATTTGATTATTTTGAGCAAATGCGAAATTGCAACCCAACACGTTAGGGC
* *
23817092 ACGATTCCGCGAATTGCCGAACATCAAATTTCATCTTCGTTT
66 ACGATTCCGCGAATTGCCAAACATCAAATATCATCTTCGTTT
23817134 TGAAGAATTT
Statistics
Matches: 198, Mismatches: 38, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
130 195 0.98
131 3 0.02
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (130 bp):
GAAATTTTGAAGGGATATTTGATTATTTTGAGCAAATGCGAAATTGCAACCCAACACGTTAGGGC
ACGATTCCGCGAATTGCCAAACATCAAATATCATCTTCGTTTAAGGGATTTTAAAAGACACGAAC
Found at i:23821564 original size:26 final size:26
Alignment explanation
Indices: 23821529--23821579 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
23821519 AATGTGAAAG
*
23821529 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
23821555 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
23821580 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:23821591 original size:103 final size:104
Alignment explanation
Indices: 23821451--23821673 Score: 369
Period size: 103 Copynumber: 2.2 Consensus size: 104
23821441 TGTATATAAA
** * *
23821451 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
23821515 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
23821554 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTT
23821619 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
23821658 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
23821674 GATATCCATT
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 90 0.80
104 22 0.20
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:23821725 original size:71 final size:72
Alignment explanation
Indices: 23821592--23821743 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
23821582 TCATTGGTGG
* *
23821592 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
23821657 GAGGGGT
66 GAGGGGT
***
23821664 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
23821728 GAGGGGT
66 GAGGGGT
23821735 TGCTAAGTG
1 TGCTAAGTG
23821744 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:23834355 original size:130 final size:130
Alignment explanation
Indices: 23834032--23834359 Score: 422
Period size: 130 Copynumber: 2.5 Consensus size: 130
23834022 AAACAATCGA
* * * * * * * *
23834032 GAAATTGCTACCTAACACGTTAGGGCACGATCCCACGAATTGCCAAATACCAGATATCGCCTTCG
1 GAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAACATCAAATATCGTCTTCG
* * * * *
23834097 TTTTAGGGATTTTAAAAGACACGAGCGAAATTTTAAAGTGATATTCGATTATTTTCAGCAAATAC
66 TTTAAGGGATTTTAAAAGACACGAACGAAATTTCAAAGGGAAATTCGATTATTTTCAGCAAATAC
* * *
23834162 GAAATTGCAACCCAACACGTTAGGGCACGATTTCGCGAATTGCCAAACATCAAATCTCATCTTCG
1 GAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAACATCAAATATCGTCTTCG
*** * * * * *
23834227 TTTAAGGGATTTTAAAAGATGTGAATGGAATTTCGAAGGGAAATTCGATTATTTTGAGCAAATGC
66 TTTAAGGGATTTTAAAAGACACGAACGAAATTTCAAAGGGAAATTCGATTATTTTCAGCAAATAC
* *
23834292 GAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCGAACATCAAATTTCGTCTTCG
1 GAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAACATCAAATATCGTCTTCG
23834357 TTT
66 TTT
23834360 TGAAGAATTT
Statistics
Matches: 170, Mismatches: 28, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
130 170 1.00
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (130 bp):
GAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAACATCAAATATCGTCTTCG
TTTAAGGGATTTTAAAAGACACGAACGAAATTTCAAAGGGAAATTCGATTATTTTCAGCAAATAC
Found at i:23839274 original size:52 final size:52
Alignment explanation
Indices: 23839204--23839375 Score: 202
Period size: 52 Copynumber: 3.2 Consensus size: 52
23839194 GACGGAAAAG
**
23839204 ATGTGATATGTGCGCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTA
1 ATGTGATATGTGTTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTA
* * * *
23839256 ATGTGATACGTGTTCCCGTATAAAACCATAGTTGGGCTATGGCGTCGGTGTA
1 ATGTGATATGTGTTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTA
* * * *
23839308 ATGTGATAATGTGATT-CCGTATAAGACAATATCTGGGATATGGCATCGGTATTA
1 ATGTGAT-ATGTG-TTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGT-GTA
*
23839362 CATGTGATCTGTGT
1 -ATGTGATATGTGT
23839376 AAGACCATGG
Statistics
Matches: 101, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
52 53 0.52
53 33 0.33
54 8 0.08
55 7 0.07
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (52 bp):
ATGTGATATGTGTTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTA
Found at i:23840247 original size:13 final size:13
Alignment explanation
Indices: 23840231--23840255 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23840221 TAGCCACATG
23840231 GCCGTGTGCCCAA
1 GCCGTGTGCCCAA
23840244 GCCGTGTGCCCA
1 GCCGTGTGCCCA
23840256 TCTGATACTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.40, G:0.32, T:0.16
Consensus pattern (13 bp):
GCCGTGTGCCCAA
Found at i:23849442 original size:17 final size:18
Alignment explanation
Indices: 23849409--23849442 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23849399 GAATTATATA
*
23849409 ATAGAAAGATGCAACGAG
1 ATAGAAAGATACAACGAG
23849427 ATAGAAAGA-ACAACGA
1 ATAGAAAGATACAACGA
23849443 ATCTTTCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.56, C:0.12, G:0.24, T:0.09
Consensus pattern (18 bp):
ATAGAAAGATACAACGAG
Found at i:23854800 original size:53 final size:52
Alignment explanation
Indices: 23854646--23854800 Score: 161
Period size: 52 Copynumber: 3.0 Consensus size: 52
23854636 TGACGGAAAA
* * *
23854646 GATGTGATATGTGCA-CCCGTATAAGACCATAGCTGGGCTATGGCATTGATGC
1 GATGTGATATGTG-ATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGC
* * * * * * *
23854698 AATGTGATACGCG-TTCCCGTATAAAACCATAGCTGGGCTATGACGTCGGTGT
1 GATGTGATATGTGATT-CCGTATAAGACCATAGCTGGGCTATGGCATCGGTGC
* *
23854750 GATGTGATAATGTGATTCCGTATAAGACCATATCTGGGATATGGCATCGGT
1 GATGTGAT-ATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGT
23854801 ATTACATGTG
Statistics
Matches: 81, Mismatches: 18, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
52 47 0.58
53 32 0.40
54 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (52 bp):
GATGTGATATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGC
Found at i:23855856 original size:29 final size:29
Alignment explanation
Indices: 23855779--23855846 Score: 109
Period size: 29 Copynumber: 2.3 Consensus size: 29
23855769 TTCCATACGA
* *
23855779 GCTGGCTACACGGCCATGTAATCCCACGG
1 GCTGGCCACACGGCCATGTGATCCCACGG
*
23855808 GCTGGTCACACGGCCATGTGATCCCACGG
1 GCTGGCCACACGGCCATGTGATCCCACGG
23855837 GCTGGCCACA
1 GCTGGCCACA
23855847 TGGGCGTGTG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.19, C:0.35, G:0.29, T:0.16
Consensus pattern (29 bp):
GCTGGCCACACGGCCATGTGATCCCACGG
Found at i:23857095 original size:3 final size:3
Alignment explanation
Indices: 23857087--23857134 Score: 87
Period size: 3 Copynumber: 15.7 Consensus size: 3
23857077 ACTTGTGCCT
23857087 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
23857133 TT
1 TT
23857135 TATTTATCAC
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 41 0.93
4 3 0.07
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:23857444 original size:3 final size:3
Alignment explanation
Indices: 23857431--23857462 Score: 55
Period size: 3 Copynumber: 10.3 Consensus size: 3
23857421 TTCATATCTA
23857431 TAT TCAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT T
23857463 TGTTTTTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:23866075 original size:48 final size:47
Alignment explanation
Indices: 23866004--23866213 Score: 199
Period size: 47 Copynumber: 4.6 Consensus size: 47
23865994 AAAAAATGTT
* * *
23866004 GTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAACGTG
1 GTGCTAAGTGGATATGCCACGATTACACATATTGATTCAT-TAACATG
* * *
23866052 GTGCTAAGTGGATATGTCACGATTACATATATTGATTCATTAACGTG
1 GTGCTAAGTGGATATGCCACGATTACACATATTGATTCATTAACATG
* *
23866099 GTGCTAAGTGG--AT---A--A--AC-CATGGTT-AATCATGTAACATG
1 GTGCTAAGTGGATATGCCACGATTACACAT-ATTGATTCAT-TAACATG
* *
23866137 GTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATG
1 GTGCTAAGTGGATATGCCACGATTACACATATTGATTCATTAACATG
* * *
23866184 GTGCTAAGTGGATATACCACGGTTAAACAT
1 GTGCTAAGTGGATATGCCACGATTACACAT
23866214 GTAACGTGGT
Statistics
Matches: 134, Mismatches: 15, Indels: 27
0.76 0.09 0.15
Matches are distributed among these distances:
37 7 0.05
38 21 0.16
40 3 0.02
42 1 0.01
43 1 0.01
45 2 0.01
47 56 0.42
48 43 0.32
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (47 bp):
GTGCTAAGTGGATATGCCACGATTACACATATTGATTCATTAACATG
Found at i:23866148 original size:38 final size:38
Alignment explanation
Indices: 23866088--23866246 Score: 149
Period size: 38 Copynumber: 4.0 Consensus size: 38
23866078 ATATATTGAT
* * *
23866088 TCAT-TAACGTGGTGCTAAGTGGATAAACCATGGTTAA
1 TCATGTAACATGGTGCTAAGTGGATATACCACGGTTAA
*
23866125 TCATGTAACATGGTGCTAAGTGGATATGCCACGGTTACA
1 TCATGTAACATGGTGCTAAGTGGATATACCACGGTTA-A
*
23866164 TATATTGATTCATTAACATGGTGCTAAGTGGATATACCACGGTTAA
1 T-CA-TG------TAACATGGTGCTAAGTGGATATACCACGGTTAA
* * * *
23866210 ACATGTAACGTGGTGCTAAGTGGATATGCCACAGTTA
1 TCATGTAACATGGTGCTAAGTGGATATACCACGGTTA
23866247 TACATGTTAA
Statistics
Matches: 101, Mismatches: 11, Indels: 19
0.77 0.08 0.15
Matches are distributed among these distances:
37 4 0.04
38 57 0.56
39 2 0.02
40 1 0.01
41 2 0.02
44 2 0.02
45 1 0.01
46 1 0.01
47 31 0.31
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (38 bp):
TCATGTAACATGGTGCTAAGTGGATATACCACGGTTAA
Found at i:23866186 original size:85 final size:85
Alignment explanation
Indices: 23866040--23866246 Score: 342
Period size: 85 Copynumber: 2.4 Consensus size: 85
23866030 ACATATTGAT
* * *
23866040 ACATGTAACGTGGTGCTAAGTGGATATGTCACGATTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTGCTA
*
23866105 AGTGGATAAACCATGGTTAA
66 AGTGGATAAACCACGGTTAA
* *
23866125 TCATGTAACATGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTGCTA
*
23866190 AGTGGATATACCACGGTTAA
66 AGTGGATAAACCACGGTTAA
*
23866210 ACATGTAACGTGGTGCTAAGTGGATATGCCACAGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
23866247 TACATGTTAA
Statistics
Matches: 112, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 112 1.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTGCTA
AGTGGATAAACCACGGTTAA
Found at i:23870061 original size:27 final size:27
Alignment explanation
Indices: 23869993--23870073 Score: 85
Period size: 27 Copynumber: 3.0 Consensus size: 27
23869983 CTATTTTGCA
* *
23869993 AAATTTAAATTCCTAATTATCTTATCT
1 AAATTTAAACTCCTAATTATCTAATCT
*
23870020 AAATTAAAACT-CTAATTATCCTAAT-T
1 AAATTTAAACTCCTAATTAT-CTAATCT
** *
23870046 TGATTTAAACTCCTAATTATTTAATCT
1 AAATTTAAACTCCTAATTATCTAATCT
23870073 A
1 A
23870074 CATAAAATCT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
26 21 0.49
27 22 0.51
ACGTcount: A:0.40, C:0.15, G:0.01, T:0.44
Consensus pattern (27 bp):
AAATTTAAACTCCTAATTATCTAATCT
Found at i:23870070 original size:26 final size:28
Alignment explanation
Indices: 23869993--23870073 Score: 89
Period size: 26 Copynumber: 3.0 Consensus size: 28
23869983 CTATTTTGCA
*
23869993 AAATTTAAATTCCTAATTATCTT-ATCT
1 AAATTTAAACTCCTAATTATCTTAATCT
* *
23870020 AAATTAAAACT-CTAATTATCCTAAT-T
1 AAATTTAAACTCCTAATTATCTTAATCT
**
23870046 TGATTTAAACTCCTAATTAT-TTAATCT
1 AAATTTAAACTCCTAATTATCTTAATCT
23870073 A
1 A
23870074 CATAAAATCT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
26 23 0.53
27 20 0.47
ACGTcount: A:0.40, C:0.15, G:0.01, T:0.44
Consensus pattern (28 bp):
AAATTTAAACTCCTAATTATCTTAATCT
Found at i:23873198 original size:17 final size:17
Alignment explanation
Indices: 23873176--23873210 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
23873166 GGTTCAATCG
*
23873176 ATTTCCAATGCAATTCA
1 ATTTCCAATCCAATTCA
23873193 ATTTCCAATCCAATTCA
1 ATTTCCAATCCAATTCA
23873210 A
1 A
23873211 ATATGATGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.37, C:0.26, G:0.03, T:0.34
Consensus pattern (17 bp):
ATTTCCAATCCAATTCA
Found at i:23877792 original size:6 final size:6
Alignment explanation
Indices: 23877768--23877823 Score: 58
Period size: 6 Copynumber: 9.3 Consensus size: 6
23877758 GCTTGACAGG
* * * * *
23877768 GAGTAT GAGTAT GAGTAT GAATAT GAGCAT GAGCAT GAGCAT GAGCAT
1 GAGTAT GAGTAT GAGTAT GAGTAT GAGTAT GAGTAT GAGTAT GAGTAT
*
23877816 GAGCAT GA
1 GAGTAT GA
23877824 AAGGAAGGGT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 47 1.00
ACGTcount: A:0.36, C:0.09, G:0.32, T:0.23
Consensus pattern (6 bp):
GAGTAT
Found at i:23877794 original size:18 final size:18
Alignment explanation
Indices: 23877771--23877824 Score: 72
Period size: 18 Copynumber: 3.0 Consensus size: 18
23877761 TGACAGGGAG
* *
23877771 TATGAGTATGAGTATGAA
1 TATGAGCATGAGCATGAA
*
23877789 TATGAGCATGAGCATGAG
1 TATGAGCATGAGCATGAA
*
23877807 CATGAGCATGAGCATGAA
1 TATGAGCATGAGCATGAA
23877825 AGGAAGGGTG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.37, C:0.09, G:0.30, T:0.24
Consensus pattern (18 bp):
TATGAGCATGAGCATGAA
Found at i:23877805 original size:12 final size:12
Alignment explanation
Indices: 23877790--23877823 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
23877780 GAGTATGAAT
23877790 ATGAGCATGAGC
1 ATGAGCATGAGC
23877802 ATGAGCATGAGC
1 ATGAGCATGAGC
23877814 ATGAGCATGA
1 ATGAGCATGA
23877824 AAGGAAGGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.35, C:0.15, G:0.32, T:0.18
Consensus pattern (12 bp):
ATGAGCATGAGC
Found at i:23883692 original size:20 final size:20
Alignment explanation
Indices: 23883664--23883744 Score: 58
Period size: 20 Copynumber: 4.0 Consensus size: 20
23883654 AAATTTTATA
*
23883664 TTATTTAATTTTCTAATAAT
1 TTATATAATTTTCTAATAAT
* *
23883684 TTATATAATTTTTTTATAATT
1 TTATATAATTTTCTAATAA-T
* * * *
23883705 TTCTAAAATTTTTATAATGAT
1 TTATATAA-TTTTCTAATAAT
*
23883726 TTA-ATAA-TTTCCAATAAT
1 TTATATAATTTTCTAATAAT
23883744 T
1 T
23883745 GCAAAAACTT
Statistics
Matches: 46, Mismatches: 13, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
18 9 0.20
20 19 0.41
21 10 0.22
22 8 0.17
ACGTcount: A:0.37, C:0.05, G:0.01, T:0.57
Consensus pattern (20 bp):
TTATATAATTTTCTAATAAT
Found at i:23883733 original size:30 final size:31
Alignment explanation
Indices: 23883669--23883744 Score: 93
Period size: 30 Copynumber: 2.5 Consensus size: 31
23883659 TTATATTATT
** *
23883669 TAATTTTCTAATAATTTATATAATTTTTTTA
1 TAATTTTCTAATAATTTATATAATGATTTAA
*
23883700 TAATTTTCTAA-AATTTTTATAATGATTTAA
1 TAATTTTCTAATAATTTATATAATGATTTAA
*
23883730 TAA-TTTCCAATAATT
1 TAATTTTCTAATAATT
23883745 GCAAAAACTT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
29 6 0.15
30 22 0.56
31 11 0.28
ACGTcount: A:0.38, C:0.05, G:0.01, T:0.55
Consensus pattern (31 bp):
TAATTTTCTAATAATTTATATAATGATTTAA
Found at i:23884040 original size:11 final size:10
Alignment explanation
Indices: 23884024--23884082 Score: 50
Period size: 11 Copynumber: 5.9 Consensus size: 10
23884014 CTTTTTATAT
23884024 TTTTAATAATA
1 TTTTAATAA-A
*
23884035 TTTTAATAAC
1 TTTTAATAAA
23884045 TTTTAA-AAA
1 TTTTAATAAA
*
23884054 CTTTAAT-AA
1 TTTTAATAAA
* *
23884063 GTTTAATAAT
1 TTTTAATAAA
23884073 TCTTTAATAA
1 T-TTTAATAA
23884083 TGTTGTATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
9 15 0.38
10 7 0.18
11 17 0.44
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (10 bp):
TTTTAATAAA
Found at i:23884079 original size:20 final size:21
Alignment explanation
Indices: 23884025--23884082 Score: 61
Period size: 20 Copynumber: 2.9 Consensus size: 21
23884015 TTTTTATATT
*
23884025 TTTAATAATAT-TTTAATAACT
1 TTTAATAAT-TCTTTAATAACG
*
23884046 TTTAA-AA-ACTTTAATAA-G
1 TTTAATAATTCTTTAATAACG
23884064 TTTAATAATTCTTTAATAA
1 TTTAATAATTCTTTAATAA
23884083 TGTTGTATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
18 5 0.16
19 10 0.32
20 11 0.35
21 5 0.16
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (21 bp):
TTTAATAATTCTTTAATAACG
Found at i:23884724 original size:20 final size:20
Alignment explanation
Indices: 23884690--23884769 Score: 61
Period size: 21 Copynumber: 3.8 Consensus size: 20
23884680 TTTTTCTTGT
* *
23884690 CATTGTTTAGATACTGTTGA
1 CATTGTTTGGGTACTGTTGA
*
23884710 CATTGTTTGGGTACTATTCGTGA
1 CATTGTTTGGGTACT-GT--TGA
* *
23884733 GTATTGTTTGGGTACTGTTCAA
1 -CATTGTTTGGGTACTGTT-GA
*
23884755 CATTGTTTGAGTACT
1 CATTGTTTGGGTACT
23884770 ATTTTGGGAT
Statistics
Matches: 47, Mismatches: 8, Indels: 9
0.73 0.12 0.14
Matches are distributed among these distances:
20 13 0.28
21 15 0.32
22 1 0.02
23 4 0.09
24 14 0.30
ACGTcount: A:0.20, C:0.11, G:0.24, T:0.45
Consensus pattern (20 bp):
CATTGTTTGGGTACTGTTGA
Found at i:23887355 original size:48 final size:48
Alignment explanation
Indices: 23887225--23887412 Score: 137
Period size: 48 Copynumber: 3.9 Consensus size: 48
23887215 ACTTAGGAGT
* * * **
23887225 CTCGCACACTAAGTGCTC-ATATCATGGCCCGAAGCCAACTCAAT-GTG
1 CTCGCACCCGAAGTGC-CAATATCATGGCCCGAAGCCAAATCAATAAAG
* * * * * * *
23887272 TTTCGTACCCAAAGTGCTAATTTAATAGCCCGAAGCCAAATCAATAAAG
1 -CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATAAAG
* ** * * ***
23887321 CTTGCACTTGAAGTGCCGATATCATGGCCTGAAGCCAAATTGGTAAAG
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATAAAG
* * *
23887369 CTCGCACCCGAAGTGCTAATATCATGGCCCAAATCCAAATCAAT
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAAT
23887413 GAATTTCCTA
Statistics
Matches: 101, Mismatches: 37, Indels: 4
0.71 0.26 0.03
Matches are distributed among these distances:
48 100 0.99
49 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (48 bp):
CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATAAAG
Found at i:23892943 original size:21 final size:20
Alignment explanation
Indices: 23892873--23892943 Score: 52
Period size: 21 Copynumber: 3.4 Consensus size: 20
23892863 GATCAAAAGT
*
23892873 CCGTGTGAAGAGGGGCACACGG
1 CCGTGTGAAGA--GGCACACGC
** *
23892895 CCGTGTGGCTGAGGCACACAC
1 CCGTGT-GAAGAGGCACACGC
* *
23892916 TCTTGTGAAGAGAGCACACGC
1 CCGTGTGAAGAG-GCACACGC
23892937 CCGTGTG
1 CCGTGTG
23892944 GACCAGGGAT
Statistics
Matches: 36, Mismatches: 11, Indels: 5
0.69 0.21 0.10
Matches are distributed among these distances:
20 4 0.11
21 23 0.64
22 6 0.17
23 3 0.08
ACGTcount: A:0.21, C:0.27, G:0.37, T:0.15
Consensus pattern (20 bp):
CCGTGTGAAGAGGCACACGC
Found at i:23894097 original size:48 final size:48
Alignment explanation
Indices: 23894045--23894144 Score: 119
Period size: 48 Copynumber: 2.1 Consensus size: 48
23894035 TAAGCCATCA
* * * * *
23894045 TAGTTTGGCTATCTAGGATGGTAGTATATTAAAGGGTATAAACCATTG
1 TAGTTGGGCCATCCAGGATAGTAATATATTAAAGGGTATAAACCATTG
** * *
23894093 TAGTTGGGCCATCCCTGATAGTAATATATTGAATGGTATAAACCATTG
1 TAGTTGGGCCATCCAGGATAGTAATATATTAAAGGGTATAAACCATTG
23894141 TAGT
1 TAGT
23894145 CGGGTCACTG
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.35
Consensus pattern (48 bp):
TAGTTGGGCCATCCAGGATAGTAATATATTAAAGGGTATAAACCATTG
Found at i:23895988 original size:20 final size:20
Alignment explanation
Indices: 23895951--23895990 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
23895941 TTTTTCTATA
** *
23895951 ATTTTATATTTTTTAATAAT
1 ATTTTATAGGTTTAAATAAT
23895971 ATTTTATAGGTTTAAATAAT
1 ATTTTATAGGTTTAAATAAT
23895991 TAGAAAAAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (20 bp):
ATTTTATAGGTTTAAATAAT
Found at i:23899670 original size:11 final size:11
Alignment explanation
Indices: 23899654--23899692 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
23899644 GAGATAGAGC
23899654 GGGATAGGGTA
1 GGGATAGGGTA
* *
23899665 GGGATAGAG-C
1 GGGATAGGGTA
23899675 GGGATAGGGTA
1 GGGATAGGGTA
23899686 GGGATAG
1 GGGATAG
23899693 ATGTATCTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
10 8 0.35
11 15 0.65
ACGTcount: A:0.28, C:0.03, G:0.54, T:0.15
Consensus pattern (11 bp):
GGGATAGGGTA
Found at i:23899672 original size:21 final size:21
Alignment explanation
Indices: 23899646--23899693 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
23899636 ATTAGATTGA
23899646 GATAGAGCGGGATAGGGTAGG
1 GATAGAGCGGGATAGGGTAGG
23899667 GATAGAGCGGGATAGGGTAGG
1 GATAGAGCGGGATAGGGTAGG
23899688 GATAGA
1 GATAGA
23899694 TGTATCTAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.31, C:0.04, G:0.50, T:0.15
Consensus pattern (21 bp):
GATAGAGCGGGATAGGGTAGG
Found at i:23900953 original size:3 final size:3
Alignment explanation
Indices: 23900947--23900984 Score: 58
Period size: 3 Copynumber: 12.3 Consensus size: 3
23900937 AAAAAAAAAG
*
23900947 AGA AGA AGA AGA AAA AGAA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AG-A AGA AGA AGA AGA AGA AGA A
23900985 AAAAAGGTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:23900969 original size:19 final size:19
Alignment explanation
Indices: 23900947--23900985 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
23900937 AAAAAAAAAG
23900947 AGAAGAAGAAGAAAAAGAA
1 AGAAGAAGAAGAAAAAGAA
*
23900966 AGAAGAAGAAGAAGAAGAA
1 AGAAGAAGAAGAAAAAGAA
23900985 A
1 A
23900986 AAAAGGTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (19 bp):
AGAAGAAGAAGAAAAAGAA
Found at i:23900981 original size:25 final size:23
Alignment explanation
Indices: 23900934--23900989 Score: 85
Period size: 25 Copynumber: 2.3 Consensus size: 23
23900924 AGCAAAGAGT
23900934 GAAAAAAAAAAAGAGAAGAAGAA
1 GAAAAAAAAAAAGAGAAGAAGAA
*
23900957 GAAAAAGAAAGAAGAAGAAGAAGAA
1 GAAAAA-AAAAAAG-AGAAGAAGAA
23900982 GAAAAAAA
1 GAAAAAAA
23900990 GGTTAGTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 6 0.20
24 8 0.27
25 16 0.53
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (23 bp):
GAAAAAAAAAAAGAGAAGAAGAA
Found at i:23903266 original size:33 final size:33
Alignment explanation
Indices: 23903216--23903447 Score: 186
Period size: 33 Copynumber: 7.0 Consensus size: 33
23903206 TATCTTCAGC
*
23903216 CCACCATC-GTACTCTGCTCCTTCCGGCTCGTAT
1 CCACCA-CAGTACTCTGCTCCTTCCAGCTCGTAT
* *
23903249 CCACTACAGTACTCTGCTTCTTCCAGCTCGTAT
1 CCACCACAGTACTCTGCTCCTTCCAGCTCGTAT
* * *
23903282 CCACCACCA-TACTCCGCTTCTTCTAGCTCGTAT
1 CCACCA-CAGTACTCTGCTCCTTCCAGCTCGTAT
* * *
23903315 CCACCACCGTACTCCGCTCCTTCTAGCTCGTAT
1 CCACCACAGTACTCTGCTCCTTCCAGCTCGTAT
* * **
23903348 CCACCACCGTACTCCGCTCCTTCTGGCTCGTAT
1 CCACCACAGTACTCTGCTCCTTCCAGCTCGTAT
* * * * * * *
23903381 CTATCGACA-TTCTCTACTCCTCCCGGCTTGTAT
1 CCA-CCACAGTACTCTGCTCCTTCCAGCTCGTAT
* *
23903414 CCACCACCA-TACTCTACTCC-TCCAGAGTCGTAT
1 CCACCA-CAGTACTCTGCTCCTTCCAG-CTCGTAT
23903447 C
1 C
23903448 TACCGTCGTT
Statistics
Matches: 168, Mismatches: 25, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
32 7 0.04
33 156 0.93
34 5 0.03
ACGTcount: A:0.16, C:0.42, G:0.12, T:0.30
Consensus pattern (33 bp):
CCACCACAGTACTCTGCTCCTTCCAGCTCGTAT
Found at i:23903311 original size:66 final size:66
Alignment explanation
Indices: 23903216--23903427 Score: 228
Period size: 66 Copynumber: 3.2 Consensus size: 66
23903206 TATCTTCAGC
* * * ** * *
23903216 CCACCATCGTACTCTGCTCCTTCCGGCTCGTATCCACTACAGTACTCTGCTTCTTCCAGCTCGTA
1 CCACCACCATACTCCGCTCCTTCTAGCTCGTATCCACCACAGTACTCTGCTCCTTCCAGCTCGTA
23903281 T
66 T
* * * *
23903282 CCACCACCATACTCCGCTTCTTCTAGCTCGTATCCACCACCGTACTCCGCTCCTTCTAGCTCGTA
1 CCACCACCATACTCCGCTCCTTCTAGCTCGTATCCACCACAGTACTCTGCTCCTTCCAGCTCGTA
23903347 T
66 T
* * * * * * * * *
23903348 CCACCACCGTACTCCGCTCCTTCTGGCTCGTATCTATCGACA-TTCTCTACTCCTCCCGGCTTGT
1 CCACCACCATACTCCGCTCCTTCTAGCTCGTATCCA-CCACAGTACTCTGCTCCTTCCAGCTCGT
23903412 AT
65 AT
23903414 CCACCACCATACTC
1 CCACCACCATACTC
23903428 TACTCCTCCA
Statistics
Matches: 120, Mismatches: 25, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
66 117 0.98
67 3 0.03
ACGTcount: A:0.16, C:0.42, G:0.12, T:0.30
Consensus pattern (66 bp):
CCACCACCATACTCCGCTCCTTCTAGCTCGTATCCACCACAGTACTCTGCTCCTTCCAGCTCGTA
T
Found at i:23903810 original size:14 final size:14
Alignment explanation
Indices: 23903791--23903827 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
23903781 TTCATTATGC
23903791 AATGAACAACTTGT
1 AATGAACAACTTGT
23903805 AATGAACAACTTGT
1 AATGAACAACTTGT
23903819 AATGAACAA
1 AATGAACAA
23903828 TATCTCAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (14 bp):
AATGAACAACTTGT
Found at i:23907602 original size:3 final size:3
Alignment explanation
Indices: 23907596--23907629 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
23907586 TTTTTTAAAT
23907596 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
23907630 AATTTATTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:23908297 original size:32 final size:31
Alignment explanation
Indices: 23908238--23908299 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 31
23908228 CCAAACAATG
23908238 TTTTCTTTTTCTTATATAAATATTTATTGTCA
1 TTTTCTTTTTC-TATATAAATATTTATTGTCA
*
23908270 TTTTCTTTTTC-ATAGTAATTATGTTATTGT
1 TTTTCTTTTTCTATA-TAAATAT-TTATTGT
23908300 TACTGGGTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
30 3 0.11
31 6 0.22
32 18 0.67
ACGTcount: A:0.23, C:0.08, G:0.06, T:0.63
Consensus pattern (31 bp):
TTTTCTTTTTCTATATAAATATTTATTGTCA
Found at i:23909681 original size:23 final size:22
Alignment explanation
Indices: 23909638--23909692 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
23909628 GTCCTCATAT
* *
23909638 TTTTTTGTTTTGTGTAATTTAA
1 TTTTTTCTTTTATGTAATTTAA
*
23909660 TTTTTTCTTTTATGTTATTTTAA
1 TTTTTTCTTTTATG-TAATTTAA
*
23909683 -CTTTTCTTTT
1 TTTTTTCTTTT
23909693 TTCTTTATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 21 0.75
23 7 0.25
ACGTcount: A:0.15, C:0.05, G:0.07, T:0.73
Consensus pattern (22 bp):
TTTTTTCTTTTATGTAATTTAA
Found at i:23910709 original size:22 final size:22
Alignment explanation
Indices: 23910680--23910728 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
23910670 TATAATTAAA
*
23910680 AATT-ATTTATAAAATAATATTT
1 AATTAATTTATAAAAAAAT-TTT
*
23910702 -ATTAATTTTTAAAAAAATTTT
1 AATTAATTTATAAAAAAATTTT
23910723 AATTAA
1 AATTAA
23910729 GTTGGTGTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 6 0.26
22 17 0.74
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
AATTAATTTATAAAAAAATTTT
Found at i:23915129 original size:158 final size:158
Alignment explanation
Indices: 23914841--23915160 Score: 613
Period size: 158 Copynumber: 2.0 Consensus size: 158
23914831 TTTAAAATCG
23914841 ATTTTAGGATGTCAAAAGAACAGAAATGCGTGCTTTTAGTTTTGCCTATGAAATTTAATGTATAA
1 ATTTTAGGATGTCAAAAGAACAGAAATGCGTGCTTTTAGTTTTGCCTATGAAATTTAATGTATAA
23914906 TCTATATGGTTAATTGTCAATGCTTCCACCTCTTCTGATGCTTTTTATACCATAATATGTGCATG
66 TCTATATGGTTAATTGTCAATGCTTCCACCTCTTCTGATGCTTTTTATACCATAATATGTGCATG
23914971 GTTTGTATTCTGCACATATCAGTTATCA
131 GTTTGTATTCTGCACATATCAGTTATCA
*
23914999 ATTTTAGGATGTCAAAAGAACAGAAATGCGTGCTTTTAGTTTTGCCTATGAAATTTAGTGTATAA
1 ATTTTAGGATGTCAAAAGAACAGAAATGCGTGCTTTTAGTTTTGCCTATGAAATTTAATGTATAA
* *
23915064 TCTATATGGTTAATTGTCAATGCTTCCACTTCTTCTGTTGCTTTTTATACCATAATATGTGCATG
66 TCTATATGGTTAATTGTCAATGCTTCCACCTCTTCTGATGCTTTTTATACCATAATATGTGCATG
23915129 GTTTGTATTCTGCACATATCAGTTATCA
131 GTTTGTATTCTGCACATATCAGTTATCA
23915157 ATTT
1 ATTT
23915161 ATTGAAATTA
Statistics
Matches: 159, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
158 159 1.00
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.42
Consensus pattern (158 bp):
ATTTTAGGATGTCAAAAGAACAGAAATGCGTGCTTTTAGTTTTGCCTATGAAATTTAATGTATAA
TCTATATGGTTAATTGTCAATGCTTCCACCTCTTCTGATGCTTTTTATACCATAATATGTGCATG
GTTTGTATTCTGCACATATCAGTTATCA
Found at i:23927263 original size:12 final size:12
Alignment explanation
Indices: 23927246--23927271 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
23927236 GACTCAACTT
23927246 GATTTATTAACA
1 GATTTATTAACA
23927258 GATTTATTAACA
1 GATTTATTAACA
23927270 GA
1 GA
23927272 AACCTTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.38
Consensus pattern (12 bp):
GATTTATTAACA
Found at i:23927698 original size:9 final size:9
Alignment explanation
Indices: 23927684--23927714 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
23927674 CAGATACCAT
23927684 ATGGAAGTA
1 ATGGAAGTA
23927693 ATGGAAGTA
1 ATGGAAGTA
23927702 ATGGAAGTA
1 ATGGAAGTA
23927711 ATGG
1 ATGG
23927715 GATGCTTATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.42, C:0.00, G:0.35, T:0.23
Consensus pattern (9 bp):
ATGGAAGTA
Found at i:23927828 original size:10 final size:10
Alignment explanation
Indices: 23927813--23927842 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
23927803 ATAAAACAAT
23927813 AATTTAAAAC
1 AATTTAAAAC
23927823 AATTTAAAAC
1 AATTTAAAAC
*
23927833 AATTCAAAAC
1 AATTTAAAAC
23927843 TAGGATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.60, C:0.13, G:0.00, T:0.27
Consensus pattern (10 bp):
AATTTAAAAC
Found at i:23932542 original size:37 final size:37
Alignment explanation
Indices: 23932501--23932574 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
23932491 ATATCAACGG
23932501 CATGAACAAACCCGTTACGAGTCATGAAATCAATTTT
1 CATGAACAAACCCGTTACGAGTCATGAAATCAATTTT
* *
23932538 CATGAACAAACCTGTTACGAGTCATGAAATCCATTTT
1 CATGAACAAACCCGTTACGAGTCATGAAATCAATTTT
23932575 GAGAAGGCTG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (37 bp):
CATGAACAAACCCGTTACGAGTCATGAAATCAATTTT
Found at i:23937014 original size:89 final size:86
Alignment explanation
Indices: 23936809--23937070 Score: 311
Period size: 89 Copynumber: 3.0 Consensus size: 86
23936799 GATGACAGGT
* *
23936809 TTTTTTTCAAATTTCTATTTTCAAAAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTTAGCT
1 TTTTTTTC-AA-TTATATTTTCAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCAG--
* * *
23936874 CACATGCTGAGGTA-TT---TTT-AA
61 GACACGCTGAGGTATTTCAATTTCTA
*
23936895 TTTTTTT-AATCTATATTTTCCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGAC
1 TTTTTTTCAAT-TATATTTT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
23936959 ACGCTGAGGTATTTTCAATTTCTA
64 ACGCTGAGGTA-TTTCAATTTCTA
* *
23936983 TTTTTTTCAATTAATATTCTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGGC
1 TTTTTTTCAATT-ATATT-TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
23937048 ACGCTGAGGTAATTTCAATTTCT
64 ACGCTGAGGT-ATTTCAATTTCT
23937071 GTTTGTCAAA
Statistics
Matches: 155, Mismatches: 9, Indels: 21
0.84 0.05 0.11
Matches are distributed among these distances:
82 12 0.08
83 1 0.01
84 35 0.23
85 15 0.10
86 7 0.05
87 3 0.02
88 9 0.06
89 70 0.45
90 3 0.02
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.38
Consensus pattern (86 bp):
TTTTTTTCAATTATATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTATTTCAATTTCTA
Found at i:23937089 original size:161 final size:160
Alignment explanation
Indices: 23936828--23937360 Score: 506
Period size: 161 Copynumber: 3.2 Consensus size: 160
23936818 AATTTCTATT
* **
23936828 TTCAAAAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTTAGCTCACATGCTGAGGTATTTTT
1 TTCAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC--GCTGAGG-----TT
* * * * * *
23936893 AATTTTTTTAATCTAT-ATTT-TCCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAG
58 AATATTTTCAATTTCTGCTTTGT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
23936956 GACACGCTGAGGTATTTTCAATTTCTATTTTTTTCAATTAATATTC
122 GACACGCTGAGGTATTTTCAATTTC----TTTTTCAATT--T-TTC
*
23937002 TTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGGCACGCTGAGG-T-A-A-TTT
1 TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTTAATATTTT
*
23937063 CAATTTCTG-TTTGTC-AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTG
66 CAATTTCTGCTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
* * *
23937126 AGGTAATTTCAATTTC----T---GTTTGC
131 AGGTATTTTCAATTTCTTTTTCAATTTTTC
23937149 --CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAATTTCAAT
1 TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG----TT-AA-
* *
23937212 TCATGCTTTTCAATTTCTGCTTTTTCAAAAATCTACTCATATTGCGAGAGGTGAGTTGAGCCTCA
60 T-A---TTTTCAATTTCTGCTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
*
23937277 GGACACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTCTGTTT
121 GGACACGCTGAGGTATTTTCAATTTCT-TTTTCAA-TT-T-TTC
* *
23937321 TTAAAAAATCAACCCATATTGCGAGAGGTGAGTTGAGCCT
1 TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
23937361 TTTAATTTCT
Statistics
Matches: 305, Mismatches: 23, Indels: 62
0.78 0.06 0.16
Matches are distributed among these distances:
145 52 0.17
147 2 0.01
148 1 0.00
150 2 0.01
152 1 0.00
153 1 0.00
155 1 0.00
159 12 0.04
160 5 0.02
161 122 0.40
162 12 0.04
163 1 0.00
164 1 0.00
165 1 0.00
166 1 0.00
170 1 0.00
171 8 0.03
172 1 0.00
173 27 0.09
174 53 0.17
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.34
Consensus pattern (160 bp):
TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTTAATATTTT
CAATTTCTGCTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
AGGTATTTTCAATTTCTTTTTCAATTTTTC
Found at i:23937189 original size:73 final size:73
Alignment explanation
Indices: 23937004--23937212 Score: 375
Period size: 72 Copynumber: 2.9 Consensus size: 73
23936994 TAATATTCTT
*
23937004 CAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGGCACGCTGAGGTAATTTCAATTT
1 CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAATTTCAATTT
*
23937069 CTGTTTGT
66 CTGTTTGC
* *
23937077 C-AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
1 CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAATTTCAATTT
23937141 CTGTTTGC
66 CTGTTTGC
23937149 CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAATTTCAATT
1 CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAATTTCAATT
23937213 CATGCTTTTC
Statistics
Matches: 129, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
72 68 0.53
73 61 0.47
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (73 bp):
CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAATTTCAATTT
CTGTTTGC
Found at i:23937284 original size:88 final size:86
Alignment explanation
Indices: 23937132--23937360 Score: 361
Period size: 88 Copynumber: 2.6 Consensus size: 86
23937122 GCTGAGGTAA
** *
23937132 TTTCAATTTCTGTTTGCCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
1 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
23937197 TGAGGTAATTTCAA-TTCATGCT
66 TGAGGTAATTTCAATTTC-TG-T
*
23937219 TTTCAATTTCTGCTTTTTCAAAAATCTACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTCAATTTCTG-TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
*
23937284 CTGAGGTATTTTCAATTTCTGT
65 CTGAGGTAATTTCAATTTCTGT
* *
23937306 TTTCAATTTCTGTTTTTAAAAAATCAACCCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
23937361 TTTAATTTCT
Statistics
Matches: 132, Mismatches: 8, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
86 40 0.30
87 25 0.19
88 64 0.48
89 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.35
Consensus pattern (86 bp):
TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
TGAGGTAATTTCAATTTCTGT
Found at i:23937310 original size:13 final size:13
Alignment explanation
Indices: 23937292--23937321 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
23937282 CGCTGAGGTA
23937292 TTTTCAATTTCTG
1 TTTTCAATTTCTG
23937305 TTTTCAATTTCTG
1 TTTTCAATTTCTG
23937318 TTTT
1 TTTT
23937322 TAAAAAATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.13, C:0.13, G:0.07, T:0.67
Consensus pattern (13 bp):
TTTTCAATTTCTG
Found at i:23937374 original size:54 final size:56
Alignment explanation
Indices: 23937305--23937416 Score: 192
Period size: 55 Copynumber: 2.0 Consensus size: 56
23937295 TCAATTTCTG
*
23937305 TTTTCAATTTCTGTTTTT-AAAAAATCAACCCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTCAATTTCTGTTTTTCAAAAAATCAACCCATATTGCGAGAGGTGAGTTAAGCC
*
23937360 TTTT-AATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCC
1 TTTTCAATTTCTGTTTTTCAAAAAATCAACCCATATTGCGAGAGGTGAGTTAAGCC
23937415 TT
1 TT
23937417 GGCTCACATG
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
54 13 0.24
55 41 0.76
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.38
Consensus pattern (56 bp):
TTTTCAATTTCTGTTTTTCAAAAAATCAACCCATATTGCGAGAGGTGAGTTAAGCC
Found at i:23938056 original size:45 final size:44
Alignment explanation
Indices: 23937957--23938057 Score: 112
Period size: 45 Copynumber: 2.2 Consensus size: 44
23937947 CAACATAAAC
* * * *
23937957 CTAATAACCCAAAGCCCAAATACTTAAAATTAAACCCAAGACCCA
1 CTAA-AACCTAAAACCCAAATACTTAAAACTAAACCCAACACCCA
* * *
23938002 CTAACACCTAAAACCCAAATACATTACAACTAAACCCAACACTCA
1 CTAAAACCTAAAACCCAAATAC-TTAAAACTAAACCCAACACCCA
*
23938047 TTAAAACCTAA
1 CTAAAACCTAA
23938058 TTTCAAAACC
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
44 15 0.33
45 31 0.67
ACGTcount: A:0.50, C:0.32, G:0.02, T:0.17
Consensus pattern (44 bp):
CTAAAACCTAAAACCCAAATACTTAAAACTAAACCCAACACCCA
Found at i:23938523 original size:26 final size:26
Alignment explanation
Indices: 23938456--23938522 Score: 72
Period size: 26 Copynumber: 2.7 Consensus size: 26
23938446 GATTGGTATC
*
23938456 ATTTTCTTT-TTTTTTTCTTCTTTCGA
1 ATTTT-TTTATTTCTTTCTTCTTTCGA
*
23938482 ATTTTTTTATTTCTTTCTTTTTTCG-
1 ATTTTTTTATTTCTTTCTTCTTTCGA
23938507 ---TTTTTATTTCTTTCTT
1 ATTTTTTTATTTCTTTCTT
23938523 TTTATACACA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
22 16 0.42
25 3 0.08
26 19 0.50
ACGTcount: A:0.07, C:0.13, G:0.03, T:0.76
Consensus pattern (26 bp):
ATTTTTTTATTTCTTTCTTCTTTCGA
Found at i:23939114 original size:3 final size:3
Alignment explanation
Indices: 23939108--23939149 Score: 75
Period size: 3 Copynumber: 13.7 Consensus size: 3
23939098 TTCACTACTA
23939108 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT GTAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TA
23939150 GTGTATACTT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:23939312 original size:19 final size:20
Alignment explanation
Indices: 23939288--23939325 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
23939278 TTTATAATAC
23939288 TATTATTAT-AATCTTATTT
1 TATTATTATCAATCTTATTT
*
23939307 TATTATTATCATTCTTATT
1 TATTATTATCAATCTTATT
23939326 AATACATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (20 bp):
TATTATTATCAATCTTATTT
Found at i:23939352 original size:16 final size:15
Alignment explanation
Indices: 23939331--23939367 Score: 65
Period size: 16 Copynumber: 2.4 Consensus size: 15
23939321 TTATTAATAC
23939331 ATTATTATTTTATCAT
1 ATTATTATTTTAT-AT
23939347 ATTATTATTTTATAT
1 ATTATTATTTTATAT
23939362 ATTATT
1 ATTATT
23939368 GCTGTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (15 bp):
ATTATTATTTTATAT
Found at i:23939397 original size:14 final size:14
Alignment explanation
Indices: 23939279--23939403 Score: 50
Period size: 14 Copynumber: 9.0 Consensus size: 14
23939269 ATGTCTTTTT
*
23939279 TTATAATACTATTA
1 TTATTATACTATTA
*
23939293 TTATAAT-CTTATT-
1 TTATTATAC-TATTA
*
23939306 TTATTATTA-TCATTC
1 TTATTA-TACT-ATTA
23939321 TTATTAATAC-ATTA
1 TTATT-ATACTATTA
*
23939335 TTATTTTATCATATTA
1 TTATTATA-C-TATTA
*
23939351 TTATTTTA-TA-TA
1 TTATTATACTATTA
* *
23939363 TTA-T-TGCTGTTA
1 TTATTATACTATTA
**
23939375 TTAACATACTATTA
1 TTATTATACTATTA
23939389 TTATTATACTTATTA
1 TTATTATAC-TATTA
23939404 ATAATATTAT
Statistics
Matches: 86, Mismatches: 10, Indels: 29
0.69 0.08 0.23
Matches are distributed among these distances:
10 1 0.01
11 2 0.02
12 10 0.12
13 11 0.13
14 37 0.43
15 12 0.14
16 13 0.15
ACGTcount: A:0.34, C:0.08, G:0.02, T:0.57
Consensus pattern (14 bp):
TTATTATACTATTA
Found at i:23939588 original size:23 final size:23
Alignment explanation
Indices: 23939560--23939615 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
23939550 TATTTCTTAT
**
23939560 TTTTATATTACTAGTTATATATA
1 TTTTATATTACTACATATATATA
* * *
23939583 TTTTATATTATTTCATGTATATA
1 TTTTATATTACTACATATATATA
23939606 TTTTATATTA
1 TTTTATATTA
23939616 TCCTTATTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.61
Consensus pattern (23 bp):
TTTTATATTACTACATATATATA
Found at i:23941744 original size:14 final size:14
Alignment explanation
Indices: 23941725--23941753 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
23941715 GCCTTTTCCA
23941725 GTGTTTGTTTGGCT
1 GTGTTTGTTTGGCT
23941739 GTGTTTGTTTGGCT
1 GTGTTTGTTTGGCT
23941753 G
1 G
23941754 AAAAGAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.00, C:0.07, G:0.38, T:0.55
Consensus pattern (14 bp):
GTGTTTGTTTGGCT
Found at i:23944382 original size:13 final size:13
Alignment explanation
Indices: 23944364--23944388 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23944354 CATCTAGGAA
23944364 TTGTAAATAACAT
1 TTGTAAATAACAT
23944377 TTGTAAATAACA
1 TTGTAAATAACA
23944389 ATTACAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36
Consensus pattern (13 bp):
TTGTAAATAACAT
Found at i:23944738 original size:20 final size:19
Alignment explanation
Indices: 23944701--23944737 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
23944691 TCCAAACACT
*
23944701 AGAAAAGTAAATTATTTTC
1 AGAAAAATAAATTATTTTC
23944720 AGAAAAATAAATTATTTT
1 AGAAAAATAAATTATTTT
23944738 TTAGAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.08, T:0.38
Consensus pattern (19 bp):
AGAAAAATAAATTATTTTC
Found at i:23944743 original size:20 final size:19
Alignment explanation
Indices: 23944700--23944744 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
23944690 ATCCAAACAC
*
23944700 TAGAAAAGTAAATTATTTT
1 TAGAAAAATAAATTATTTT
*
23944719 CAGAAAAATAAATTATTTTT
1 TAGAAAAATAAATTA-TTTT
23944739 TAGAAA
1 TAGAAA
23944745 TTATTTTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.51, C:0.02, G:0.09, T:0.38
Consensus pattern (19 bp):
TAGAAAAATAAATTATTTT
Found at i:23944747 original size:14 final size:14
Alignment explanation
Indices: 23944728--23944765 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
23944718 TCAGAAAAAT
*
23944728 AAATTATTTTTTAG
1 AAATTATTTTTCAG
23944742 AAATTATTTTTCAG
1 AAATTATTTTTCAG
*
23944756 AAAATATTTT
1 AAATTATTTT
23944766 ATTGGTAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (14 bp):
AAATTATTTTTCAG
Found at i:23955216 original size:16 final size:16
Alignment explanation
Indices: 23955195--23955230 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
23955185 AACCACATTA
23955195 ATTTCTAAATGATTTC
1 ATTTCTAAATGATTTC
23955211 ATTTCTAAATGATTTC
1 ATTTCTAAATGATTTC
23955227 ATTT
1 ATTT
23955231 TTTCATTTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.31, C:0.11, G:0.06, T:0.53
Consensus pattern (16 bp):
ATTTCTAAATGATTTC
Found at i:23955647 original size:23 final size:22
Alignment explanation
Indices: 23955621--23955668 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
23955611 TAAGTGAATA
23955621 TTTATTATTATTTTTGTTTTGTT
1 TTTATTATTATTTTTGTTTT-TT
* *
23955644 TTTATTTTTGTTTTTGTTTTTT
1 TTTATTATTATTTTTGTTTTTT
23955666 TTT
1 TTT
23955669 CTTTTCTTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 5 0.22
23 18 0.78
ACGTcount: A:0.08, C:0.00, G:0.08, T:0.83
Consensus pattern (22 bp):
TTTATTATTATTTTTGTTTTTT
Found at i:23955650 original size:17 final size:18
Alignment explanation
Indices: 23955628--23955668 Score: 68
Period size: 17 Copynumber: 2.4 Consensus size: 18
23955618 ATATTTATTA
23955628 TTATTTTTG-TTTTGTTT
1 TTATTTTTGTTTTTGTTT
23955645 TTATTTTTGTTTTTGTTT
1 TTATTTTTGTTTTTGTTT
23955663 TT-TTTT
1 TTATTTT
23955669 CTTTTCTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 13 0.57
18 10 0.43
ACGTcount: A:0.05, C:0.00, G:0.10, T:0.85
Consensus pattern (18 bp):
TTATTTTTGTTTTTGTTT
Found at i:23955658 original size:7 final size:6
Alignment explanation
Indices: 23955631--23955668 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
23955621 TTTATTATTA
*
23955631 TTTTTG -TTTTG TTTTTA TTTTTG TTTTTG TTTTT- TTTT
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTT
23955669 CTTTTCTTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
5 9 0.31
6 20 0.69
ACGTcount: A:0.03, C:0.00, G:0.11, T:0.87
Consensus pattern (6 bp):
TTTTTG
Found at i:23959063 original size:6 final size:6
Alignment explanation
Indices: 23959011--23959065 Score: 51
Period size: 6 Copynumber: 9.3 Consensus size: 6
23959001 AGTGAATATT
* * * *
23959011 TTTTTA TTATTTA TTGTTA TTTTT- GTTTT- GTTTTG TTTTTA TTTTTA
1 TTTTTA TT-TTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
23959058 TTTTTA TT
1 TTTTTA TT
23959066 AATTTTCTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
5 9 0.21
6 27 0.64
7 6 0.14
ACGTcount: A:0.13, C:0.00, G:0.07, T:0.80
Consensus pattern (6 bp):
TTTTTA
Found at i:23959775 original size:22 final size:22
Alignment explanation
Indices: 23959724--23959821 Score: 74
Period size: 22 Copynumber: 4.5 Consensus size: 22
23959714 GTCATAAGGT
* *
23959724 CGTGTGCCTCTTTTCACACGGC
1 CGTGTGCCTCTCTTCACACGGG
* *
23959746 CCTATGCCTCTCTTCACACGGG
1 CGTGTGCCTCTCTTCACACGGG
** **
23959768 CGTGTGCCT-TAGTCACAC-AA
1 CGTGTGCCTCTCTTCACACGGG
* * *
23959788 CAGTGTGTCTCTCTTTACATGGG
1 C-GTGTGCCTCTCTTCACACGGG
23959811 CGTGTGCCTCT
1 CGTGTGCCTCT
23959822 GCCACACGAT
Statistics
Matches: 55, Mismatches: 18, Indels: 6
0.70 0.23 0.08
Matches are distributed among these distances:
20 1 0.02
21 14 0.25
22 39 0.71
23 1 0.02
ACGTcount: A:0.13, C:0.33, G:0.22, T:0.32
Consensus pattern (22 bp):
CGTGTGCCTCTCTTCACACGGG
Done.