Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 81 of 290
Found at i:24700250 original size:25 final size:25
Alignment explanation
Indices: 24700222--24700270 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
24700212 TACAGTTTAT
* *
24700222 CTATAGTAGTCTCAGTATATACTAC
1 CTATAGCAGTCTCAGGATATACTAC
*
24700247 CTATAGCAGTTTCAGGATATACTA
1 CTATAGCAGTCTCAGGATATACTA
24700271 TCAAAAATAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (25 bp):
CTATAGCAGTCTCAGGATATACTAC
Found at i:24711076 original size:38 final size:39
Alignment explanation
Indices: 24711034--24711126 Score: 109
Period size: 39 Copynumber: 2.4 Consensus size: 39
24711024 ATCTCCGACT
* * *
24711034 AACCCAACACACCATGTA-GGGATAAAATCGACCCACCC
1 AACCCTACACACCAAGTAGGGGATAAAATCAACCCACCC
* * *
24711072 AACCCTACACA-CAAGTATGGGGATATAATCAACCTATCC
1 AACCCTACACACCAAGTA-GGGGATAAAATCAACCCACCC
24711111 AACCCTACACACCAAG
1 AACCCTACACACCAAG
24711127 AGATACCGTA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
37 5 0.11
38 10 0.22
39 27 0.59
40 4 0.09
ACGTcount: A:0.40, C:0.34, G:0.12, T:0.14
Consensus pattern (39 bp):
AACCCTACACACCAAGTAGGGGATAAAATCAACCCACCC
Found at i:24718168 original size:40 final size:40
Alignment explanation
Indices: 24718106--24718181 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
24718096 ACACTATGTA
* *
24718106 GGGATAAAATCAACCTACCCAACCCTATACACCAAGTATG
1 GGGATAAAATCAACCCACCCAACCCTACACACCAAGTATG
* * *
24718146 GGGATATAATTAACCCATCCAACCCTACACACCAAG
1 GGGATAAAATCAACCCACCCAACCCTACACACCAAG
24718182 AAGTACCGTA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.39, C:0.32, G:0.12, T:0.17
Consensus pattern (40 bp):
GGGATAAAATCAACCCACCCAACCCTACACACCAAGTATG
Found at i:24719536 original size:71 final size:71
Alignment explanation
Indices: 24719420--24719559 Score: 253
Period size: 71 Copynumber: 2.0 Consensus size: 71
24719410 AGGCGTTACA
*
24719420 ACATGGTACGCAAGTCTCGAGACATGGCAAGTAAGGTCTAAGGTCTCAAAAAATGATTCTAAGGT
1 ACATGGCACGCAAGTCTCGAGACATGGCAAGTAAGGTCTAAGGTCTCAAAAAATGATTCTAAGGT
24719485 CTCAAG
66 CTCAAG
* *
24719491 ACATGGCACGCAAGTCTCGGGACATGGCAAGTAAGGTCTAAGGTCTCAAGAAATGATTCTAAGGT
1 ACATGGCACGCAAGTCTCGAGACATGGCAAGTAAGGTCTAAGGTCTCAAAAAATGATTCTAAGGT
24719556 CTCA
66 CTCA
24719560 TGAAATGATT
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
71 66 1.00
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (71 bp):
ACATGGCACGCAAGTCTCGAGACATGGCAAGTAAGGTCTAAGGTCTCAAAAAATGATTCTAAGGT
CTCAAG
Found at i:24719551 original size:21 final size:21
Alignment explanation
Indices: 24719527--24719571 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
24719517 GCAAGTAAGG
24719527 TCTAAGGTCTCAAGAAATGAT
1 TCTAAGGTCTCAAGAAATGAT
*
24719548 TCTAAGGTCTCATGAAATGAT
1 TCTAAGGTCTCAAGAAATGAT
24719569 TCT
1 TCT
24719572 TATATCTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (21 bp):
TCTAAGGTCTCAAGAAATGAT
Found at i:24719579 original size:21 final size:21
Alignment explanation
Indices: 24719527--24719583 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
24719517 GCAAGTAAGG
*
24719527 TCTAAGGTCTCAAGAAATGAT
1 TCTAAGATCTCAAGAAATGAT
* *
24719548 TCTAAGGTCTCATGAAATGAT
1 TCTAAGATCTCAAGAAATGAT
* *
24719569 TCTTATATCTCAAGA
1 TCTAAGATCTCAAGA
24719584 CATACGAAGT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (21 bp):
TCTAAGATCTCAAGAAATGAT
Found at i:24722260 original size:23 final size:23
Alignment explanation
Indices: 24722231--24722285 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
24722221 TTGACTTATT
24722231 AATTAATTATAAATAATTAAA-TA
1 AATTAATTATAAA-AATTAAATTA
* * *
24722254 ATTTAATTTTATAAATTAAATTA
1 AATTAATTATAAAAATTAAATTA
24722277 AATTAATTA
1 AATTAATTA
24722286 ATCATTATGA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
22 7 0.27
23 19 0.73
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
AATTAATTATAAAAATTAAATTA
Found at i:24726741 original size:3 final size:3
Alignment explanation
Indices: 24726680--24726732 Score: 63
Period size: 3 Copynumber: 17.7 Consensus size: 3
24726670 TTTGTTAACT
* *
24726680 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TCT- TTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
*
24726725 TTA GTA TT
1 TTA TTA TT
24726733 GGTATTATTG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
2 1 0.02
3 41 0.98
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:24726813 original size:22 final size:23
Alignment explanation
Indices: 24726766--24726814 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
24726756 ATCTCTATTC
*
24726766 ATATATACTTATGTATTGTCAAAT
1 ATATATACTTATGTATTATC-AAT
24726790 ATATATATCTTAT-TATTATC-AT
1 ATATATA-CTTATGTATTATCAAT
24726812 ATA
1 ATA
24726815 AGTGCTTGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 5 0.22
24 13 0.57
25 5 0.22
ACGTcount: A:0.39, C:0.08, G:0.04, T:0.49
Consensus pattern (23 bp):
ATATATACTTATGTATTATCAAT
Found at i:24737902 original size:1 final size:1
Alignment explanation
Indices: 24737896--24737924 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
24737886 TTTGCTTCCT
24737896 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
24737925 CTTTGGAGAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:24739214 original size:46 final size:44
Alignment explanation
Indices: 24739133--24739460 Score: 218
Period size: 44 Copynumber: 7.6 Consensus size: 44
24739123 TAATACAGGA
** *
24739133 CTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCAGAT
1 CTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAA--TCAGAT
*
24739179 CTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAG-AT-AGTAAT
1 CTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATCAG--AT
* * * * *
24739223 CCTATCTCCTTGAGATTACAATGGAGCGGATTAAAG-----GAT
1 CTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATCAGAT
* * ** * * *
24739262 CTTATCTCTCT-AAAGTTACAGTATAGAAGATC--A-CATCAGGT
1 CTTATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGAATCAGAT
* *
24739303 CTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGAT
1 CTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAA--TCAGAT
* ** * *
24739349 CTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA-GAGAT
1 CTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-AATCAGAT
* * *
24739393 CTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAG-A-CACTAT
1 CTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATCA-GAT
*
24739436 CCTATCTCCCTGA-AGTTACAGTGGA
1 CTTATCTCCCTGAGA-TTACAGTGGA
24739461 ATGGATTAAA
Statistics
Matches: 221, Mismatches: 44, Indels: 37
0.73 0.15 0.12
Matches are distributed among these distances:
37 1 0.00
38 2 0.01
39 21 0.10
41 25 0.11
42 7 0.03
43 25 0.11
44 70 0.32
45 1 0.00
46 68 0.31
47 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (44 bp):
CTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATCAGAT
Found at i:24739689 original size:21 final size:21
Alignment explanation
Indices: 24739663--24739738 Score: 82
Period size: 21 Copynumber: 3.5 Consensus size: 21
24739653 CCTTACCCCC
24739663 TGAAGTTACAACAGAATGGAT
1 TGAAGTTACAACAGAATGGAT
* ***
24739684 TGAAGTTACAAGTCA-TATCTCT
1 TGAAGTTACAA--CAGAATGGAT
24739706 CTGAAGTTACAACAGAATGGAT
1 -TGAAGTTACAACAGAATGGAT
24739728 TGAAGTTACAA
1 TGAAGTTACAA
24739739 GTCATATCTC
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
21 24 0.56
22 6 0.14
23 13 0.30
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (21 bp):
TGAAGTTACAACAGAATGGAT
Found at i:24739714 original size:23 final size:23
Alignment explanation
Indices: 24739684--24739757 Score: 82
Period size: 23 Copynumber: 3.3 Consensus size: 23
24739674 CAGAATGGAT
24739684 TGAAGTTACAAGTCATATCTCTC
1 TGAAGTTACAAGTCATATCTCTC
* ***
24739707 TGAAGTTACAA--CAGAATGGAT-
1 TGAAGTTACAAGTCA-TATCTCTC
24739728 TGAAGTTACAAGTCATATCTCTC
1 TGAAGTTACAAGTCATATCTCTC
24739751 TGAAGTT
1 TGAAGTT
24739758 GCAATGGAGT
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
21 13 0.33
22 6 0.15
23 20 0.51
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (23 bp):
TGAAGTTACAAGTCATATCTCTC
Found at i:24739725 original size:44 final size:44
Alignment explanation
Indices: 24739662--24739776 Score: 194
Period size: 44 Copynumber: 2.6 Consensus size: 44
24739652 ACCTTACCCC
24739662 CTGAAGTTACAACAGAATGGATTGAAGTTACAAGTCATATCTCT
1 CTGAAGTTACAACAGAATGGATTGAAGTTACAAGTCATATCTCT
24739706 CTGAAGTTACAACAGAATGGATTGAAGTTACAAGTCATATCTCT
1 CTGAAGTTACAACAGAATGGATTGAAGTTACAAGTCATATCTCT
* ** *
24739750 CTGAAGTTGCAATGGAGTGGATTGAAG
1 CTGAAGTTACAACAGAATGGATTGAAG
24739777 CAACATGACA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 67 1.00
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.29
Consensus pattern (44 bp):
CTGAAGTTACAACAGAATGGATTGAAGTTACAAGTCATATCTCT
Found at i:24741070 original size:3 final size:3
Alignment explanation
Indices: 24741012--24741061 Score: 57
Period size: 3 Copynumber: 16.7 Consensus size: 3
24741002 TTTGTTAACT
* *
24741012 TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TCT- TTA CTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
*
24741057 GTA TT
1 TTA TT
24741062 GGTATTATTG
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
2 1 0.03
3 38 0.97
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:24741142 original size:22 final size:23
Alignment explanation
Indices: 24741095--24741143 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
24741085 ATCTCTATTC
*
24741095 ATATATACTTATGTATTGTCAAAT
1 ATATATACTTATGTATTATC-AAT
24741119 ATATATATCTTAT-TATTATC-AT
1 ATATATA-CTTATGTATTATCAAT
24741141 ATA
1 ATA
24741144 AGTGCTTGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 5 0.22
24 13 0.57
25 5 0.22
ACGTcount: A:0.39, C:0.08, G:0.04, T:0.49
Consensus pattern (23 bp):
ATATATACTTATGTATTATCAAT
Found at i:24753419 original size:10 final size:8
Alignment explanation
Indices: 24753382--24753413 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
24753372 TTTTCTTCTT
*
24753382 TTTTTTTC
1 TTTTTTTA
24753390 TTTTTTTA
1 TTTTTTTA
24753398 TTTTTTTA
1 TTTTTTTA
24753406 TTTTTTTA
1 TTTTTTTA
24753414 AATTTTATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.09, C:0.03, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTTTTA
Found at i:24753720 original size:117 final size:118
Alignment explanation
Indices: 24753538--24753767 Score: 381
Period size: 117 Copynumber: 2.0 Consensus size: 118
24753528 TATTTCCGGT
24753538 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
* *
24753603 CCTACCCCGGTTACTCAGTCAGTCACGATTTGAGCCATACTCATAACCTCGGC
66 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTCGGC
****
24753656 TAGCGGAGTTTTACTTGTCACGTCACA-AACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
**
24753720 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCTGTACTCATAACC
66 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACC
24753768 ATGGAAAACA
Statistics
Matches: 104, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
117 81 0.78
118 23 0.22
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.23
Consensus pattern (118 bp):
TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTCGGC
Found at i:24754707 original size:5 final size:5
Alignment explanation
Indices: 24754697--24754758 Score: 56
Period size: 5 Copynumber: 12.0 Consensus size: 5
24754687 ACTATTTAAC
*
24754697 TAAAA TAAAA TAAAAA TAAAA GAAAA TAATAA -ATAAA -AAAA TAAAA
1 TAAAA TAAAA T-AAAA TAAAA TAAAA TAA-AA TA-AAA TAAAA TAAAA
*
24754743 AAAAA TAAAAA TAAAA
1 TAAAA T-AAAA TAAAA
24754759 AGAAAGATCG
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
4 3 0.06
5 32 0.67
6 13 0.27
ACGTcount: A:0.82, C:0.00, G:0.02, T:0.16
Consensus pattern (5 bp):
TAAAA
Found at i:24754722 original size:16 final size:15
Alignment explanation
Indices: 24754697--24754759 Score: 74
Period size: 16 Copynumber: 4.0 Consensus size: 15
24754687 ACTATTTAAC
24754697 TAAAATAAAATAAAAA
1 TAAAA-AAAATAAAAA
24754713 TAAAAGAAAATAATAAA
1 TAAAA-AAAATAA-AAA
24754730 T-AAAAAAATAAAAA
1 TAAAAAAAATAAAAA
*
24754744 AAAATAAAAATAAAAA
1 TAAA-AAAAATAAAAA
24754760 GAAAGATCGG
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
14 3 0.07
15 9 0.21
16 26 0.62
17 4 0.10
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.16
Consensus pattern (15 bp):
TAAAAAAAATAAAAA
Found at i:24754732 original size:7 final size:6
Alignment explanation
Indices: 24754698--24754759 Score: 62
Period size: 6 Copynumber: 10.7 Consensus size: 6
24754688 CTATTTAACT
24754698 AAAAT- AAAATA AAAATA AAAGA-A AATAATA AATAA-A AAAAT- AAAA-A
1 AAAATA AAAATA AAAATA AAA-ATA AA-AATA AA-AATA AAAATA AAAATA
24754744 AAAATA AAAATA AAAA
1 AAAATA AAAATA AAAA
24754760 GAAAGATCGG
Statistics
Matches: 50, Mismatches: 0, Indels: 13
0.79 0.00 0.21
Matches are distributed among these distances:
5 15 0.30
6 27 0.54
7 8 0.16
ACGTcount: A:0.84, C:0.00, G:0.02, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:24765011 original size:15 final size:14
Alignment explanation
Indices: 24764981--24765007 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
24764971 AACATGTGTT
24764981 TTTTTAAATATTTA
1 TTTTTAAATATTTA
24764995 TTTTTAAATATTT
1 TTTTTAAATATTT
24765008 TATTATACTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTTTAAATATTTA
Found at i:24765335 original size:49 final size:49
Alignment explanation
Indices: 24765282--24765381 Score: 123
Period size: 49 Copynumber: 2.0 Consensus size: 49
24765272 CAAAAATTAC
* * *
24765282 TAGATTTATATAGATTTGAAGT-GGGATATTAGATTTTATATTTAAAA-AT
1 TAGATTTATATAGATTAGAAGTAGGG-TATAACATTTTATA-TTAAAATAT
* *
24765331 TAGATTTATATGGATTAGAATTAGGGTATAACATTTTATATTAAAATAT
1 TAGATTTATATAGATTAGAAGTAGGGTATAACATTTTATATTAAAATAT
24765380 TA
1 TA
24765382 TTAGAAAGAA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
48 6 0.14
49 35 0.80
50 3 0.07
ACGTcount: A:0.40, C:0.01, G:0.15, T:0.44
Consensus pattern (49 bp):
TAGATTTATATAGATTAGAAGTAGGGTATAACATTTTATATTAAAATAT
Found at i:24766733 original size:14 final size:14
Alignment explanation
Indices: 24766687--24766735 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 14
24766677 ATTGAGCTAT
* *
24766687 TTATAAAATCTTCTT
1 TTATAAAAT-TTATA
24766702 TTATAAATATTATATA
1 TTATAAA-ATT-TATA
24766718 TTATAAAATTTATA
1 TTATAAAATTTATA
24766732 TTAT
1 TTAT
24766736 TTTAAACTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
14 8 0.27
15 11 0.37
16 11 0.37
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (14 bp):
TTATAAAATTTATA
Found at i:24770427 original size:47 final size:47
Alignment explanation
Indices: 24770318--24770416 Score: 162
Period size: 47 Copynumber: 2.1 Consensus size: 47
24770308 CATTTGCTCA
24770318 CATTTGACTGAAACCATAATTGAGCTTTGTCTACAATCTTGCAAACT
1 CATTTGACTGAAACCATAATTGAGCTTTGTCTACAATCTTGCAAACT
* * * *
24770365 CATTTGACTAAAACCATGATTGAGCTTTGTCTATAATTTTGCAAACT
1 CATTTGACTGAAACCATAATTGAGCTTTGTCTACAATCTTGCAAACT
24770412 CATTT
1 CATTT
24770417 ATTTGAAACC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.37
Consensus pattern (47 bp):
CATTTGACTGAAACCATAATTGAGCTTTGTCTACAATCTTGCAAACT
Found at i:24773118 original size:19 final size:19
Alignment explanation
Indices: 24773094--24773130 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
24773084 TAGGCTTAGA
24773094 CTTGCGGATTCAATTTCTG
1 CTTGCGGATTCAATTTCTG
24773113 CTTGCGGATTCAATTTCT
1 CTTGCGGATTCAATTTCT
24773131 AGGTTGTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.16, C:0.22, G:0.19, T:0.43
Consensus pattern (19 bp):
CTTGCGGATTCAATTTCTG
Found at i:24776118 original size:27 final size:27
Alignment explanation
Indices: 24776056--24776106 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
24776046 AATTCATCTG
* *
24776056 TAATATTAAAAATATTATGAAAACAAT
1 TAATAATAAAAAAATTATGAAAACAAT
*
24776083 TAATTATAAAAAAATTAT-AAAACA
1 TAATAATAAAAAAATTATGAAAACA
24776107 TGATAATAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (27 bp):
TAATAATAAAAAAATTATGAAAACAAT
Found at i:24781128 original size:47 final size:46
Alignment explanation
Indices: 24781049--24781140 Score: 121
Period size: 47 Copynumber: 2.0 Consensus size: 46
24781039 ATCATATATA
* * *
24781049 TGTGGTCAAGCTACTATATTGCAGCCAAGCTACCAAAATAGAAATG
1 TGTGGTCAAGCCACTATACTGCAGCCAAGCTACCAAAACAGAAATG
* * *
24781095 TGTGGTCGAGCCACTATAACTGCAGTCAAGCTACCATAACAGAAAT
1 TGTGGTCAAGCCACTAT-ACTGCAGCCAAGCTACCAAAACAGAAAT
24781141 ATGGTTAAAC
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
46 15 0.38
47 24 0.62
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.23
Consensus pattern (46 bp):
TGTGGTCAAGCCACTATACTGCAGCCAAGCTACCAAAACAGAAATG
Found at i:24799791 original size:23 final size:24
Alignment explanation
Indices: 24799762--24799833 Score: 64
Period size: 24 Copynumber: 3.1 Consensus size: 24
24799752 TTTTAGTTTT
24799762 TATATTTTTCCAATCAATTAATTC
1 TATATTTTTCCAATCAATTAATTC
*
24799786 TA-A--TTT-C-ATCAATTTCAATTTT
1 TATATTTTTCCAATCAA-TT-AA-TTC
*
24799808 TATATTTTTCGAATCAATTAATTC
1 TATATTTTTCCAATCAATTAATTC
24799832 TA
1 TA
24799834 GTCCTGACTG
Statistics
Matches: 37, Mismatches: 3, Indels: 16
0.66 0.05 0.29
Matches are distributed among these distances:
19 5 0.14
20 3 0.08
21 5 0.14
22 4 0.11
23 2 0.05
24 6 0.16
25 5 0.14
26 2 0.05
27 5 0.14
ACGTcount: A:0.33, C:0.14, G:0.01, T:0.51
Consensus pattern (24 bp):
TATATTTTTCCAATCAATTAATTC
Found at i:24799793 original size:46 final size:46
Alignment explanation
Indices: 24799740--24799833 Score: 161
Period size: 46 Copynumber: 2.0 Consensus size: 46
24799730 TCTTATGTTT
* *
24799740 TAATTTCATCAATTTTAGTTTTTATATTTTTCCAATCAATTAATTC
1 TAATTTCATCAATTTCAATTTTTATATTTTTCCAATCAATTAATTC
*
24799786 TAATTTCATCAATTTCAATTTTTATATTTTTCGAATCAATTAATTC
1 TAATTTCATCAATTTCAATTTTTATATTTTTCCAATCAATTAATTC
24799832 TA
1 TA
24799834 GTCCTGACTG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.32, C:0.13, G:0.02, T:0.53
Consensus pattern (46 bp):
TAATTTCATCAATTTCAATTTTTATATTTTTCCAATCAATTAATTC
Found at i:24800488 original size:18 final size:17
Alignment explanation
Indices: 24800447--24800490 Score: 58
Period size: 18 Copynumber: 2.7 Consensus size: 17
24800437 CAAAATTTTT
24800447 TATTTAAAT-TTAATTA
1 TATTTAAATATTAATTA
24800463 TA--TAAATATTAATGTA
1 TATTTAAATATTAAT-TA
24800479 TATTTAAATATT
1 TATTTAAATATT
24800491 TGTTATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
14 5 0.21
15 5 0.21
16 6 0.25
18 8 0.33
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
TATTTAAATATTAATTA
Found at i:24802040 original size:19 final size:19
Alignment explanation
Indices: 24802005--24802042 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
24801995 GAGATGATAG
24802005 TTTGATTGAGTGAAAAAAT
1 TTTGATTGAGTGAAAAAAT
24802024 TTTGAATTGAGTGAAAAAA
1 TTTG-ATTGAGTGAAAAAA
24802043 AGTTTGTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.45, C:0.00, G:0.21, T:0.34
Consensus pattern (19 bp):
TTTGATTGAGTGAAAAAAT
Found at i:24802043 original size:21 final size:19
Alignment explanation
Indices: 24802003--24802048 Score: 65
Period size: 21 Copynumber: 2.3 Consensus size: 19
24801993 TAGAGATGAT
24802003 AGTTTGATTGAGTGAAAAA
1 AGTTTGATTGAGTGAAAAA
*
24802022 ATTTTGAATTGAGTGAAAAAA
1 AGTTTG-ATTGAGTG-AAAAA
24802043 AGTTTG
1 AGTTTG
24802049 TTATTATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 5 0.22
20 8 0.35
21 10 0.43
ACGTcount: A:0.41, C:0.00, G:0.24, T:0.35
Consensus pattern (19 bp):
AGTTTGATTGAGTGAAAAA
Found at i:24806037 original size:15 final size:15
Alignment explanation
Indices: 24806017--24806047 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
24806007 TTGGTTGGAT
*
24806017 TAGCTCTTATGAGCA
1 TAGCTCTCATGAGCA
24806032 TAGCTCTCATGAGCA
1 TAGCTCTCATGAGCA
24806047 T
1 T
24806048 TTGGAGTGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (15 bp):
TAGCTCTCATGAGCA
Found at i:24806944 original size:20 final size:20
Alignment explanation
Indices: 24806919--24806958 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
24806909 GTCATGTATC
24806919 CATTGGTTTTTAATTTTATT
1 CATTGGTTTTTAATTTTATT
24806939 CATTGGTTTTTAATTTTATT
1 CATTGGTTTTTAATTTTATT
24806959 TAACTCAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.05, G:0.10, T:0.65
Consensus pattern (20 bp):
CATTGGTTTTTAATTTTATT
Found at i:24810853 original size:26 final size:26
Alignment explanation
Indices: 24810823--24810875 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
24810813 TTATTGCATG
24810823 TAAGTCCCTAGCCATTTTTCATTGAT
1 TAAGTCCCTAGCCATTTTTCATTGAT
24810849 TAAGTCCCTAGCCATTTTTCATTGAT
1 TAAGTCCCTAGCCATTTTTCATTGAT
24810875 T
1 T
24810876 TTTTTTAGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.43
Consensus pattern (26 bp):
TAAGTCCCTAGCCATTTTTCATTGAT
Found at i:24816603 original size:68 final size:68
Alignment explanation
Indices: 24816480--24816661 Score: 249
Period size: 68 Copynumber: 2.7 Consensus size: 68
24816470 AGAGGTTTAA
* *
24816480 TGTGTAAGACCATAGCTAGGCTAT-GACAACATATGAAGTCCTCCAAGACAATAAACACGGGTTT
1 TGTGTAAGACCATAGCTAGGCTATGGA-AACATATGAAGTCTTCCAAGACAATAAACACGAGTTT
24816544 ATAT
65 ATAT
* * * * *
24816548 TGTTTAAGACCATAGCTTGGCTATGGAAACATATGAAGTCTTCCAGGACAGTAAACATGAGTTTA
1 TGTGTAAGACCATAGCTAGGCTATGGAAACATATGAAGTCTTCCAAGACAATAAACACGAGTTTA
24816613 TAT
66 TAT
* * * *
24816616 TGTGTAAGACTATAGCTAGGCTATGGTAACAAATGAAGTCTGCCAA
1 TGTGTAAGACCATAGCTAGGCTATGGAAACATATGAAGTCTTCCAA
24816662 AATGGAAAAA
Statistics
Matches: 99, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
68 97 0.98
69 2 0.02
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.27
Consensus pattern (68 bp):
TGTGTAAGACCATAGCTAGGCTATGGAAACATATGAAGTCTTCCAAGACAATAAACACGAGTTTA
TAT
Found at i:24824531 original size:35 final size:35
Alignment explanation
Indices: 24824492--24824562 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
24824482 CGTCGTGCCC
*
24824492 AGCGTCGTGCCCACGACTCCAGCCGTGACAGAATA
1 AGCGTCGTGCCCACGACTCCAACCGTGACAGAATA
24824527 AGCGTCGTGCCCACGACTCCAACCGTGACAGAATA
1 AGCGTCGTGCCCACGACTCCAACCGTGACAGAATA
24824562 A
1 A
24824563 AAAGAAAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.28, C:0.34, G:0.24, T:0.14
Consensus pattern (35 bp):
AGCGTCGTGCCCACGACTCCAACCGTGACAGAATA
Found at i:24835615 original size:20 final size:20
Alignment explanation
Indices: 24835592--24835632 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
24835582 AAGAATTGAG
24835592 ATAGTCGAGTGTGCATATTA
1 ATAGTCGAGTGTGCATATTA
24835612 ATAGTCGAGTGTGCATATTA
1 ATAGTCGAGTGTGCATATTA
24835632 A
1 A
24835633 CTTCATGACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.32, C:0.10, G:0.24, T:0.34
Consensus pattern (20 bp):
ATAGTCGAGTGTGCATATTA
Found at i:24836663 original size:28 final size:26
Alignment explanation
Indices: 24836605--24836656 Score: 68
Period size: 28 Copynumber: 1.9 Consensus size: 26
24836595 ATGCAGTTAT
24836605 ATTATTTTTTTTGGTTGATTAATTAC
1 ATTATTTTTTTTGGTTGATTAATTAC
* *
24836631 TTTATTGTTTCTTTGGTTGTTTAATT
1 ATTATT-TTT-TTTGGTTGATTAATT
24836657 TGATTATGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 5 0.23
27 3 0.14
28 14 0.64
ACGTcount: A:0.17, C:0.04, G:0.13, T:0.65
Consensus pattern (26 bp):
ATTATTTTTTTTGGTTGATTAATTAC
Found at i:24847769 original size:1 final size:1
Alignment explanation
Indices: 24847765--24847793 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
24847755 GAGAAAAAGC
24847765 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
24847794 CCATCATGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:24853135 original size:28 final size:29
Alignment explanation
Indices: 24853104--24853168 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 29
24853094 TACTTCTCCG
*
24853104 ACTCTTTTTCTACTCTTTATCCTT-GTTT
1 ACTCTTTTTATACTCTTTATCCTTCGTTT
* * * *
24853132 ACTCGTTTTATTCTCTTTTTCCTTCTTTT
1 ACTCTTTTTATACTCTTTATCCTTCGTTT
24853161 A-TCTTTTT
1 ACTCTTTTT
24853169 TCTCTACAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
28 26 0.87
29 4 0.13
ACGTcount: A:0.09, C:0.23, G:0.03, T:0.65
Consensus pattern (29 bp):
ACTCTTTTTATACTCTTTATCCTTCGTTT
Found at i:24858516 original size:29 final size:29
Alignment explanation
Indices: 24858484--24858545 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
24858474 ATTATTGTTA
*
24858484 TTATCCAATACATTAT-TT-TATCATATATT
1 TTAT-CAATAAATTATATTATAT-ATATATT
*
24858513 TTATCTATAAATTATATTATATATATATT
1 TTATCAATAAATTATATTATATATATATT
24858542 TTAT
1 TTAT
24858546 TTTTATATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 9 0.31
29 17 0.59
30 3 0.10
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (29 bp):
TTATCAATAAATTATATTATATATATATT
Found at i:24858546 original size:16 final size:15
Alignment explanation
Indices: 24858500--24858558 Score: 59
Period size: 15 Copynumber: 3.9 Consensus size: 15
24858490 AATACATTAT
24858500 TTTATCATATATTTTA
1 TTTAT-ATATATTTTA
* *
24858516 TCTATA-A-ATTATA
1 TTTATATATATTTTA
24858529 TTATATATATATTTTA
1 TT-TATATATATTTTA
*
24858545 TTTTTATATATTTT
1 TTTATATATATTTT
24858559 TATATATTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
13 6 0.17
14 5 0.14
15 13 0.37
16 11 0.31
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (15 bp):
TTTATATATATTTTA
Found at i:24858558 original size:10 final size:10
Alignment explanation
Indices: 24858543--24858572 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
24858533 ATATATATTT
24858543 TATTTTTATA
1 TATTTTTATA
24858553 TATTTTTATA
1 TATTTTTATA
24858563 TATTTTTATA
1 TATTTTTATA
24858573 AAATTGTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
TATTTTTATA
Found at i:24858924 original size:23 final size:22
Alignment explanation
Indices: 24858871--24859003 Score: 58
Period size: 24 Copynumber: 5.7 Consensus size: 22
24858861 CTATCTTTCT
24858871 TATATTTTTATATATTATTTTA
1 TATATTTTTATATATTATTTTA
* *
24858893 TTTGTTTTT-TACTATTTATTTTA
1 TATATTTTTATA-TA-TTATTTTA
* *
24858916 CTATATTTTATATGCAAATTA-CTTA
1 -TATATTTT-TAT--ATATTATTTTA
*
24858941 TTATATTTTTAT-TATT-TTATA
1 -TATATTTTTATATATTATTTTA
* *
24858962 TTATATTTCCTTATATTTTATTCATA
1 -TATATTT--TTATATATTATT-TTA
*
24858988 TTATATTATTATATAT
1 -TATATTTTTATATAT
24859004 AACTTATTTT
Statistics
Matches: 85, Mismatches: 13, Indels: 24
0.70 0.11 0.20
Matches are distributed among these distances:
21 15 0.18
22 9 0.11
23 12 0.14
24 19 0.22
25 14 0.16
26 14 0.16
27 1 0.01
28 1 0.01
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (22 bp):
TATATTTTTATATATTATTTTA
Found at i:24871269 original size:206 final size:206
Alignment explanation
Indices: 24870901--24871451 Score: 832
Period size: 206 Copynumber: 2.7 Consensus size: 206
24870891 GTAGATCTGG
*
24870901 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAATACATAGCT
1 CTGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
* *
24870966 GATTTGGCTTTCACATGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * **
24871031 AGAACAAATCAAAGTTTGGCGTCTCTATATTCGACGAAGAGCAGATACATAGCAGATCTGGCCTT
130 AGAACAAATAAAAGTTTGGCGTCTCCATATTCGACGAAGAGCAGACACATAGCAGATCTAACCTT
* * *
24871096 TAGATGTTTATA
195 CAGATGATTAGA
* * * *
24871108 CTGAAGCAGATCCAAGATGATTTGGCATCTTTGTGTTTACAAGGAACAAATCAAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * * *
24871173 ATTTGGCTGTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTATCAGA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * *
24871238 GAACAAATAAAAGTTTGGCGTCTCCATATTCGACGGAGGGTAGACACATAGCAGATCTAATCTTC
131 GAACAAATAAAAGTTTGGCGTCTCCATATTCGACGAAGAGCAGACACATAGCAGATCTAACCTTC
24871303 AGATGATTAGA
196 AGATGATTAGA
*
24871314 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * * *
24871379 ATTTGGTTTTCACGTGCTTACGCTGAATCAAATCTAAGATGATTTGGCATCTCTATATTGTCAAA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
*
24871444 AAACAAAT
131 GAACAAAT
24871452 CGAAGAAGCA
Statistics
Matches: 307, Mismatches: 37, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
206 300 0.98
207 7 0.02
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATAAAAGTTTGGCGTCTCCATATTCGACGAAGAGCAGACACATAGCAGATCTAACCTTC
AGATGATTAGA
Found at i:24873166 original size:12 final size:11
Alignment explanation
Indices: 24873151--24873228 Score: 70
Period size: 12 Copynumber: 7.0 Consensus size: 11
24873141 TCTAATACAT
24873151 TATTTTATCATA
1 TATTTTAT-ATA
*
24873163 TATTTTATCTA
1 TATTTTATATA
**
24873174 TAAATTATATTA
1 TATTTTATA-TA
* *
24873186 TATTATATATTT
1 TATTTTATA-TA
24873198 TATTTTATATA
1 TATTTTATATA
24873209 TATTTT-TATA
1 TATTTTATATA
24873219 TATTTT-TATA
1 TATTTTATATA
24873229 AAATTGTATT
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
10 14 0.25
11 15 0.27
12 26 0.47
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.63
Consensus pattern (11 bp):
TATTTTATATA
Found at i:24873180 original size:28 final size:27
Alignment explanation
Indices: 24873138--24873224 Score: 79
Period size: 30 Copynumber: 3.1 Consensus size: 27
24873128 ATTATTGTTA
*
24873138 TTATCTAATACATTATTTTATCATATATT
1 TTATCT-ATAAATTATTTTAT-ATATATT
24873167 TTATCTATAAATTATATTATATTATATATT
1 TTATCTATAAATTAT-TT-TA-TATATATT
* *
24873197 TTAT-TTTATATATATTTT-TATATATT
1 TTATCTATAAAT-TATTTTATATATATT
24873223 TT
1 TT
24873225 TATAAAATTG
Statistics
Matches: 51, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
26 10 0.20
28 9 0.18
29 15 0.29
30 16 0.31
31 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (27 bp):
TTATCTATAAATTATTTTATATATATT
Found at i:24873220 original size:10 final size:10
Alignment explanation
Indices: 24873198--24873228 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
24873188 TTATATATTT
24873198 TATTTTATATA
1 TATTTT-TATA
24873209 TATTTTTATA
1 TATTTTTATA
24873219 TATTTTTATA
1 TATTTTTATA
24873229 AAATTGTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 14 0.70
11 6 0.30
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
TATTTTTATA
Found at i:24875831 original size:10 final size:10
Alignment explanation
Indices: 24875816--24875913 Score: 110
Period size: 10 Copynumber: 9.4 Consensus size: 10
24875806 TCCTCTTATC
24875816 CAAATTCTCT
1 CAAATTCTCT
24875826 CAAATTCTCT
1 CAAATTCTCT
24875836 CAAATTCT-T
1 CAAATTCTCT
24875845 CCAAAAATTCTCT
1 -C--AAATTCTCT
24875858 CAAATTCTCT
1 CAAATTCTCT
24875868 CAAATTCT-T
1 CAAATTCTCT
24875877 CCAAAAATTCTCT
1 -C--AAATTCTCT
*
24875890 CATATTCTCT
1 CAAATTCTCT
*
24875900 CAAATTTTCT
1 CAAATTCTCT
24875910 CAAA
1 CAAA
24875914 GCTCTCTTTA
Statistics
Matches: 77, Mismatches: 3, Indels: 16
0.80 0.03 0.17
Matches are distributed among these distances:
9 2 0.03
10 57 0.74
12 16 0.21
13 2 0.03
ACGTcount: A:0.34, C:0.28, G:0.00, T:0.39
Consensus pattern (10 bp):
CAAATTCTCT
Found at i:24875854 original size:32 final size:32
Alignment explanation
Indices: 24875817--24875913 Score: 169
Period size: 32 Copynumber: 3.0 Consensus size: 32
24875807 CCTCTTATCC
24875817 AAATTCTCTCAAATTCTCTCAAATTCTTCCAA
1 AAATTCTCTCAAATTCTCTCAAATTCTTCCAA
24875849 AAATTCTCTCAAATTCTCTCAAATTCTTCCAA
1 AAATTCTCTCAAATTCTCTCAAATTCTTCCAA
*
24875881 AAATTCTCTCATATTCTCTCAAATT-TTCTCAA
1 AAATTCTCTCAAATTCTCTCAAATTCTTC-CAA
24875913 A
1 A
24875914 GCTCTCTTTA
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
31 3 0.05
32 60 0.95
ACGTcount: A:0.34, C:0.27, G:0.00, T:0.39
Consensus pattern (32 bp):
AAATTCTCTCAAATTCTCTCAAATTCTTCCAA
Found at i:24876156 original size:47 final size:48
Alignment explanation
Indices: 24876062--24876158 Score: 151
Period size: 47 Copynumber: 2.0 Consensus size: 48
24876052 AGTGATAATT
**
24876062 TTAATATTTCAATAGTATTTAATATTTTTTTAATTTATGCAATTTTAA
1 TTAATATTTCAATACAATTTAATATTTTTTTAATTTATGCAATTTTAA
* *
24876110 TTAATTTTTCAATACAATTTAATA-TTTTTTCATTTATGCAATTTTAA
1 TTAATATTTCAATACAATTTAATATTTTTTTAATTTATGCAATTTTAA
24876157 TT
1 TT
24876159 TTAATTTTAT
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
47 24 0.53
48 21 0.47
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (48 bp):
TTAATATTTCAATACAATTTAATATTTTTTTAATTTATGCAATTTTAA
Found at i:24877116 original size:7 final size:7
Alignment explanation
Indices: 24877104--24877149 Score: 83
Period size: 7 Copynumber: 6.6 Consensus size: 7
24877094 AATTATCTCA
24877104 TATTTAG
1 TATTTAG
*
24877111 TATTTAA
1 TATTTAG
24877118 TATTTAG
1 TATTTAG
24877125 TATTTAG
1 TATTTAG
24877132 TATTTAG
1 TATTTAG
24877139 TATTTAG
1 TATTTAG
24877146 TATT
1 TATT
24877150 ATGTATACAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (7 bp):
TATTTAG
Found at i:24877803 original size:18 final size:18
Alignment explanation
Indices: 24877762--24877796 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
24877752 GCCAGGTGCG
*
24877762 TATCCTAGCCCTTATATA
1 TATCCTAACCCTTATATA
24877780 TATCCTAACCCTTATAT
1 TATCCTAACCCTTATAT
24877797 GTTTCCTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.29, G:0.03, T:0.40
Consensus pattern (18 bp):
TATCCTAACCCTTATATA
Found at i:24877971 original size:22 final size:23
Alignment explanation
Indices: 24877946--24877990 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
24877936 CCATCGCCTT
*
24877946 ATGGG-ATTCAAACACCTCCGCC
1 ATGGGAATGCAAACACCTCCGCC
24877968 ATGGGTAATGCAAACACCTCCGC
1 ATGGG-AATGCAAACACCTCCGC
24877991 AGTCATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 5 0.25
24 15 0.75
ACGTcount: A:0.29, C:0.33, G:0.20, T:0.18
Consensus pattern (23 bp):
ATGGGAATGCAAACACCTCCGCC
Found at i:24878263 original size:27 final size:27
Alignment explanation
Indices: 24878233--24878330 Score: 87
Period size: 27 Copynumber: 3.6 Consensus size: 27
24878223 TAAAAGTTTT
24878233 TTTTAATATTT-TAATTATAATTTACTC
1 TTTT-ATATTTGTAATTATAATTTACTC
* * *
24878260 TTTTATATTTGTAATAAAATAAAAGTT-GT-
1 TTTTATATTTGTAAT----TATAATTTACTC
24878289 TTTTAGTATTT-TAATTATAATTTACTC
1 TTTTA-TATTTGTAATTATAATTTACTC
24878316 TTTTATATTTGTAAT
1 TTTTATATTTGTAAT
24878331 AGAATAAAAG
Statistics
Matches: 56, Mismatches: 6, Indels: 18
0.70 0.08 0.22
Matches are distributed among these distances:
25 6 0.11
26 12 0.21
27 17 0.30
29 9 0.16
30 6 0.11
31 6 0.11
ACGTcount: A:0.34, C:0.04, G:0.05, T:0.57
Consensus pattern (27 bp):
TTTTATATTTGTAATTATAATTTACTC
Found at i:24878276 original size:56 final size:56
Alignment explanation
Indices: 24878215--24878352 Score: 240
Period size: 56 Copynumber: 2.5 Consensus size: 56
24878205 TTCTTTCATT
*
24878215 TAATAAAATAAAAGTTTTTTTTAATATTTTAATTATAATTTACTCTTTTATATTTG
1 TAATAAAATAAAAGTTGTTTTTAATATTTTAATTATAATTTACTCTTTTATATTTG
*
24878271 TAATAAAATAAAAGTTGTTTTTAGTATTTTAATTATAATTTACTCTTTTATATTTG
1 TAATAAAATAAAAGTTGTTTTTAATATTTTAATTATAATTTACTCTTTTATATTTG
* *
24878327 TAATAGAATAAAAGTTGTTTTGAATA
1 TAATAAAATAAAAGTTGTTTTTAATA
24878353 AGGAAATATT
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 77 1.00
ACGTcount: A:0.38, C:0.03, G:0.07, T:0.51
Consensus pattern (56 bp):
TAATAAAATAAAAGTTGTTTTTAATATTTTAATTATAATTTACTCTTTTATATTTG
Found at i:24884351 original size:26 final size:26
Alignment explanation
Indices: 24884320--24884427 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
24884310 TGATATGCCC
*
24884320 ATCATGGAACATTTACCTAAGCCATT
1 ATCATGGAACATTTACCTAACCCATT
24884346 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
24884372 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
24884398 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
24884424 ATCA
1 ATCA
24884428 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:24885043 original size:26 final size:25
Alignment explanation
Indices: 24884981--24885044 Score: 101
Period size: 26 Copynumber: 2.4 Consensus size: 25
24884971 AATTAATATT
24884981 TAATTTAATTAATTAATCTTACACCC
1 TAATTT-ATTAATTAATCTTACACCC
24885007 TAATTATATTAATTAATCTTACACCC
1 TAATT-TATTAATTAATCTTACACCC
24885033 TAATTTGATTAA
1 TAATTT-ATTAA
24885045 CTAAACCCTT
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
25 1 0.03
26 34 0.94
27 1 0.03
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.44
Consensus pattern (25 bp):
TAATTTATTAATTAATCTTACACCC
Found at i:24885086 original size:16 final size:17
Alignment explanation
Indices: 24885046--24885080 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 17
24885036 TTTGATTAAC
24885046 TAAACCCTTACAAAAACCA
1 TAAACCC-TA-AAAAACCA
24885065 TAAACCCTAAAAAACC
1 TAAACCCTAAAAAACC
24885081 CTAACCTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 2 0.12
19 7 0.44
ACGTcount: A:0.54, C:0.31, G:0.00, T:0.14
Consensus pattern (17 bp):
TAAACCCTAAAAAACCA
Found at i:24885114 original size:32 final size:32
Alignment explanation
Indices: 24885078--24885138 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
24885068 ACCCTAAAAA
*
24885078 ACCCTAACCTTAAACCAT-AAAAACCCTAACCT
1 ACCCTAACCCT-AACCATAAAAAACCCTAACCT
*
24885110 ACCCTAACCCTAACCCTAAAAAACCCTAA
1 ACCCTAACCCTAACCATAAAAAACCCTAA
24885139 TCCCAACAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 5 0.19
32 21 0.81
ACGTcount: A:0.44, C:0.39, G:0.00, T:0.16
Consensus pattern (32 bp):
ACCCTAACCCTAACCATAAAAAACCCTAACCT
Found at i:24902426 original size:41 final size:41
Alignment explanation
Indices: 24902352--24902475 Score: 106
Period size: 41 Copynumber: 3.0 Consensus size: 41
24902342 AAAATTAGTA
* *
24902352 GCTTCAATCTGTTCCACTACAACTTTAGAGAGATAAGGTTC
1 GCTTCAATCTATTCCACTACAACTTTAGAGAGATAAGATTC
* * *
24902393 GCTTTAATCTATTCCACTGCAATTTTA-AGGAGATAAGATTC
1 GCTTCAATCTATTCCACTACAACTTTAGA-GAGATAAGATTC
** * * * *
24902434 GTAACTTCAATCTGCTCTATTGCAACTTCAGAGAGATAAGAT
1 G---CTTCAATCTATTCCACTACAACTTTAGAGAGATAAGAT
24902476 CTGTAACTTG
Statistics
Matches: 66, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
40 1 0.02
41 35 0.53
44 29 0.44
45 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.33
Consensus pattern (41 bp):
GCTTCAATCTATTCCACTACAACTTTAGAGAGATAAGATTC
Found at i:24902473 original size:44 final size:44
Alignment explanation
Indices: 24902310--24902888 Score: 167
Period size: 51 Copynumber: 12.5 Consensus size: 44
24902300 ATCTTGTCGT
* * * * *
24902310 TTCAATCTGCTCTATTGCAACTTCAAGGAGATAAAATTAGTAGC
1 TTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTCGTAAC
* * * *
24902354 TTCAATCTGTTCCACTACAACTT-TAGAGAGATAAGGTTCG---C
1 TTCAATCTGCTCCACTGCAACTTCAAG-GAGATAAGATTCGTAAC
* ** * *
24902395 TTTAATCTATTCCACTGCAATTTTAAGGAGATAAGATTCGTAAC
1 TTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTCGTAAC
* *
24902439 TTCAATCTGCTCTATTGCAACTTC-AGAGAGATAAGA-TCTGTAACTTGTCGC
1 TTCAATCTGCTCCACTGCAACTTCAAG-GAGATAAGATTC-GTAA-------C
* * * * * *
24902490 TTCAATCTGTTTCACTGTAACTTTAGGGAAATAAGATTCGCTATA-
1 TTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTCG-TA-AC
* * * *** *
24902535 TTCAATTTGCTCTACTGTAACTTTTGGGAGATAAGATTTGTAAC
1 TTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTCGTAAC
* * * * * * *
24902579 TTGTAGCTTTAATCTGTTCTACTGTAAATTTAGGGAGATAAGATTCGCTGTA-
1 -T-T--C---AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTCG-T-AAC
* * * *
24902631 TTCAATCTGCTCAACTGCAACTTCAGGGAGATAAAATTTGTAACATGTAGC
1 TTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGA--T-T--C--GTAAC
* * *
24902682 TTCAATCTGTTCCACTGTAACTTCAGGGA-ATAAGATTAAC-TATA-
1 TTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATT--CGTA-AC
* *
24902726 TTCAATCTGCTTCACTGCAACTTCAAGGAGATAAGATTTGTGACTTATAGC
1 TTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGA--T-T--CGTA-A-C
* * *
24902777 TTCAATCTGTTCTACTGCAACTTCAAGG-GAATAAGATTAGCTATA-
1 TTCAATCTGCTCCACTGCAACTTCAAGGAG-ATAAGATTCG-TA-AC
* * * * * * **
24902822 TTCAATCTCCTCTACTACAACTTTAGGGAGATAAGATTTGTGGC
1 TTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTCGTAAC
* * *
24902866 TTTAATCAGTTCCACTGCAACTT
1 TTCAATCTGCTCCACTGCAACTT
24902889 TAGGAAGATA
Statistics
Matches: 408, Mismatches: 79, Indels: 96
0.70 0.14 0.16
Matches are distributed among these distances:
41 32 0.08
42 2 0.00
43 7 0.02
44 107 0.26
45 99 0.24
46 2 0.00
47 10 0.02
48 8 0.02
49 5 0.01
50 8 0.02
51 119 0.29
52 7 0.02
53 2 0.00
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (44 bp):
TTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTCGTAAC
Found at i:24902524 original size:51 final size:48
Alignment explanation
Indices: 24902438--24902814 Score: 244
Period size: 51 Copynumber: 7.8 Consensus size: 48
24902428 AGATTCGTAA
* * * *
24902438 CTTCAATCTGCTCTATTGCAACTTCAGAGAGATAAGATCTGTAACTTGTCG
1 CTTCAATCTGTTCTACTGTAACTTCAGGGAGATAAGAT-TGTAAC-TGT-G
* * *
24902489 CTTCAATCTGTT-TCACTGTAACTTTAGGGAAATAAGATTCG---CTAT-
1 CTTCAATCTGTTCT-ACTGTAACTTCAGGGAGATAAGATT-GTAACTGTG
* * * **
24902534 ATTCAATTTGCTCTACTGTAACTTTTGGGAGATAAGATTTGTAACTTGTAG
1 CTTCAATCTGTTCTACTGTAACTTCAGGGAGATAAGA-TTGTAAC-TGT-G
* * *
24902585 CTTTAATCTGTTCTACTGTAAATTTAGGGAGATAAGATTCG---CTGT-
1 CTTCAATCTGTTCTACTGTAACTTCAGGGAGATAAGATT-GTAACTGTG
* * * * *
24902630 ATTCAATCTGCTCAACTGCAACTTCAGGGAGATAAAATTTGTAACATGTAG
1 CTTCAATCTGTTCTACTGTAACTTCAGGGAGATAAGA-TTGTAAC-TGT-G
* *
24902681 CTTCAATCTGTTCCACTGTAACTTCAGGGA-ATAAGA-T-TAACTAT-
1 CTTCAATCTGTTCTACTGTAACTTCAGGGAGATAAGATTGTAACTGTG
* * * * *
24902725 ATTCAATCTGCTTC-ACTGCAACTTCAAGGAGATAAGATTTGTGACTTATAG
1 CTTCAATCTG-TTCTACTGTAACTTCAGGGAGATAAGA-TTGTAAC-TGT-G
*
24902776 CTTCAATCTGTTCTACTGCAACTTCAAGGGA-ATAAGATT
1 CTTCAATCTGTTCTACTGTAACTTC-AGGGAGATAAGATT
24902815 AGCTATATTC
Statistics
Matches: 259, Mismatches: 39, Indels: 57
0.73 0.11 0.16
Matches are distributed among these distances:
44 23 0.09
45 70 0.27
46 7 0.03
47 10 0.04
48 8 0.03
49 8 0.03
50 14 0.05
51 115 0.44
52 4 0.02
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (48 bp):
CTTCAATCTGTTCTACTGTAACTTCAGGGAGATAAGATTGTAACTGTG
Found at i:24902552 original size:45 final size:45
Alignment explanation
Indices: 24902310--24902905 Score: 271
Period size: 44 Copynumber: 12.9 Consensus size: 45
24902300 ATCTTGTCGT
* * * * * **
24902310 TTCAATCTGCTCTATTGCAACTTCAAGGAGATAAAATTAG-TAGC
1 TTCAATCTGCTCTACTGCAACTTTAGGGAGATAAGATTTGCTATA
* * * * * *
24902354 TTCAATCTGTTCCACTACAACTTTAGAGAGATAAGGTTCGC--T-
1 TTCAATCTGCTCTACTGCAACTTTAGGGAGATAAGATTTGCTATA
** * * * *
24902396 TT-AATCTATTCCACTGCAATTTTAAGGAGATAAGATTCG-TA-A
1 TTCAATCTGCTCTACTGCAACTTTAGGGAGATAAGATTTGCTATA
* * * * * *
24902438 CTTCAATCTGCTCTATTGCAACTTCAGAGAGATAAGATCTGTAACTTGTCGC
1 -TTCAATCTGCTCTACTGCAACTTTAGGGAGATAAGAT-T-T-GC-TAT--A
* * * *
24902490 TTCAATCTG-TTTCACTGTAACTTTAGGGAAATAAGATTCGCTATA
1 TTCAATCTGCTCT-ACTGCAACTTTAGGGAGATAAGATTTGCTATA
* * * *
24902535 TTCAATTTGCTCTACTGTAACTTTTGGGAGATAAGATTTGTAACTTGTA
1 TTCAATCTGCTCTACTGCAACTTTAGGGAGATAAGATTTG---C-TATA
* * * * * *
24902584 GCTTTAATCTGTTCTACTGTAAATTTAGGGAGATAAGATTCGCTGTA
1 --TTCAATCTGCTCTACTGCAACTTTAGGGAGATAAGATTTGCTATA
* * * *
24902631 TTCAATCTGCTCAACTGCAACTTCAGGGAGATAAAATTTGTAACATGTA
1 TTCAATCTGCTCTACTGCAACTTTAGGGAGATAAGATTTG---C-TATA
* * * * **
24902680 GCTTCAATCTGTTCCACTGTAACTTCAGGGA-ATAAGATTAACTATA
1 --TTCAATCTGCTCTACTGCAACTTTAGGGAGATAAGATTTGCTATA
* *
24902726 TTCAATCTGCT-TCACTGCAACTTCAAGGAGATAAGATTTGTGACTTATA
1 TTCAATCTGCTCT-ACTGCAACTTTAGGGAGATAAGA-TT-TG-C-TATA
* * *
24902775 GCTTCAATCTGTTCTACTGCAACTTCAAGGGA-ATAAGATTAGCTATA
1 --TTCAATCTGCTCTACTGCAACTT-TAGGGAGATAAGATTTGCTATA
* * ***
24902822 TTCAATCTCCTCTACTACAACTTTAGGGAGATAAGATTTG-TGGC
1 TTCAATCTGCTCTACTGCAACTTTAGGGAGATAAGATTTGCTATA
* * * * * *
24902866 TTTAATCAGTTCCACTGCAACTTTAGGAAGATAAAATTTG
1 TTCAATCTGCTCTACTGCAACTTTAGGGAGATAAGATTTG
24902906 TCATGGTGAC
Statistics
Matches: 421, Mismatches: 92, Indels: 78
0.71 0.16 0.13
Matches are distributed among these distances:
41 31 0.07
42 2 0.00
43 2 0.00
44 118 0.28
45 100 0.24
46 7 0.02
47 11 0.03
48 6 0.01
49 13 0.03
50 12 0.03
51 114 0.27
52 5 0.01
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.35
Consensus pattern (45 bp):
TTCAATCTGCTCTACTGCAACTTTAGGGAGATAAGATTTGCTATA
Found at i:24902761 original size:191 final size:191
Alignment explanation
Indices: 24902393--24902862 Score: 588
Period size: 191 Copynumber: 2.5 Consensus size: 191
24902383 GATAAGGTTC
* * * * * *
24902393 GCTTTAATCTATTCCACTGCAATTTTAAGGAGATAAGATTCG-TAACTTCAATCTGCTCTATTGC
1 GCTTTAATCTGTTCTACTGCAAATTTAGGGAGATAAGATTCGCTTA-TTCAATCTGCTCTACTGC
* * * * * *
24902457 AACTTCAGAGAGATAAGATCTGTAACTTGTCGCTTCAATCTGTTTCACTGTAACTTTAGGGAAAT
65 AACTTCAGGGAGATAAGATTTGTAACATGTAGCTTCAATCTGTTCCACTGTAACTTCAGGGAAAT
** * * *** *
24902522 AAGATTCGCTATATTCAATTTGCTCTACTGTAACTTTTGGGAGATAAGATTTGTAACTTGTA
130 AAGATTAACTATATTCAATCTGCTCTACTGCAACTTCAAGGAGATAAGATTTGTAACTTATA
* *
24902584 GCTTTAATCTGTTCTACTGTAAATTTAGGGAGATAAGATTCGCTGTATTCAATCTGCTCAACTGC
1 GCTTTAATCTGTTCTACTGCAAATTTAGGGAGATAAGATTCGCT-TATTCAATCTGCTCTACTGC
*
24902649 AACTTCAGGGAGATAAAATTTGTAACATGTAGCTTCAATCTGTTCCACTGTAACTTCAGGG-AAT
65 AACTTCAGGGAGATAAGATTTGTAACATGTAGCTTCAATCTGTTCCACTGTAACTTCAGGGAAAT
*
24902713 AAGATTAACTATATTCAATCTGCT-TCACTGCAACTTCAAGGAGATAAGATTTGTGACTTATA
130 AAGATTAACTATATTCAATCTGCTCT-ACTGCAACTTCAAGGAGATAAGATTTGTAACTTATA
* * * * * *
24902775 GCTTCAATCTGTTCTACTGCAACTTCAAGGGA-ATAAGATTAGCTATATTCAATCTCCTCTACTA
1 GCTTTAATCTGTTCTACTGCAAATT-TAGGGAGATAAGATTCGCT-TATTCAATCTGCTCTACTG
*
24902839 CAACTTTAGGGAGATAAGATTTGT
64 CAACTTCAGGGAGATAAGATTTGT
24902863 GGCTTTAATC
Statistics
Matches: 240, Mismatches: 35, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
190 1 0.00
191 162 0.68
192 76 0.32
193 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (191 bp):
GCTTTAATCTGTTCTACTGCAAATTTAGGGAGATAAGATTCGCTTATTCAATCTGCTCTACTGCA
ACTTCAGGGAGATAAGATTTGTAACATGTAGCTTCAATCTGTTCCACTGTAACTTCAGGGAAATA
AGATTAACTATATTCAATCTGCTCTACTGCAACTTCAAGGAGATAAGATTTGTAACTTATA
Found at i:24902863 original size:96 final size:95
Alignment explanation
Indices: 24902439--24902862 Score: 546
Period size: 96 Copynumber: 4.4 Consensus size: 95
24902429 GATTCGTAAC
* * * *
24902439 TTCAATCTGCTCTATTGCAACTTCAGAGAGATAAGATCTGTAACTTGTCGCTTCAATCTGTT-TC
1 TTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTCAATCTGTTCT-
*
24902503 ACTGTAACTTTAGGGAAATAAGATTCGCTATA
65 ACTGTAACTTTAGGG-AATAAGATTAGCTATA
* * ** *
24902535 TTCAATTTGCTCTACTGTAACTTTTGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCTA
1 TTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTCAATCTGTTCTA
* * *
24902600 CTGTAAATTTAGGGAGATAAGATTCGCTGTA
66 CTGTAACTTTAGGGA-ATAAGATTAGCTATA
* * * *
24902631 TTCAATCTGCTCAACTGCAACTTCAGGGAGATAAAATTTGTAACATGTAGCTTCAATCTGTTCCA
1 TTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTCAATCTGTTCTA
* *
24902696 CTGTAACTTCAGGGAATAAGATTAACTATA
66 CTGTAACTTTAGGGAATAAGATTAGCTATA
* * *
24902726 TTCAATCTGCT-TCACTGCAACTTCAAGGAGATAAGATTTGTGACTTATAGCTTCAATCTGTTCT
1 TTCAATCTGCTCT-ACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTCAATCTGTTCT
* *
24902790 ACTGCAACTTCAAGGGAATAAGATTAGCTATA
65 ACTGTAACTT-TAGGGAATAAGATTAGCTATA
* * *
24902822 TTCAATCTCCTCTACTACAACTTTAGGGAGATAAGATTTGT
1 TTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGT
24902863 GGCTTTAATC
Statistics
Matches: 284, Mismatches: 39, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
95 78 0.27
96 204 0.72
97 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (95 bp):
TTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTCAATCTGTTCTA
CTGTAACTTTAGGGAATAAGATTAGCTATA
Found at i:24905855 original size:33 final size:33
Alignment explanation
Indices: 24905811--24905875 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
24905801 GTACTGTCTC
24905811 AATCTTCGGGTTATTCAGATTAAGGTACAACAT
1 AATCTTCGGGTTATTCAGATTAAGGTACAACAT
* *
24905844 AATCTTTGGGTTGTTCAGATTAAGGTACAACA
1 AATCTTCGGGTTATTCAGATTAAGGTACAACA
24905876 CAACTTCTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (33 bp):
AATCTTCGGGTTATTCAGATTAAGGTACAACAT
Found at i:24917453 original size:13 final size:12
Alignment explanation
Indices: 24917431--24917480 Score: 57
Period size: 13 Copynumber: 4.1 Consensus size: 12
24917421 TTCATATTTC
*
24917431 TATACAAAAATCT
1 TATA-AAAAATAT
24917444 TATAATAAAATAT
1 TATAA-AAAATAT
24917457 TATAAAAAATAT
1 TATAAAAAATAT
*
24917469 TA-ATAAAATAT
1 TATAAAAAATAT
24917480 T
1 T
24917481 TTAACCAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
11 9 0.26
12 10 0.29
13 15 0.44
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (12 bp):
TATAAAAAATAT
Found at i:24917476 original size:11 final size:11
Alignment explanation
Indices: 24917446--24917480 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
24917436 AAAAATCTTA
24917446 TAATAAAATAT
1 TAATAAAATAT
*
24917457 TATAAAAAATAT
1 TA-ATAAAATAT
24917469 TAATAAAATAT
1 TAATAAAATAT
24917480 T
1 T
24917481 TTAACCAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (11 bp):
TAATAAAATAT
Found at i:24924276 original size:42 final size:42
Alignment explanation
Indices: 24924217--24924303 Score: 147
Period size: 42 Copynumber: 2.1 Consensus size: 42
24924207 TGTAAAGATA
* *
24924217 CTTGGGTTTTGGGAGTGGAGTCTTTGGATGTGGAGGATGAGG
1 CTTGGGTTTTGGGAGTGGAGTATTCGGATGTGGAGGATGAGG
*
24924259 CTTGGGTTTTGGGAGTGGAGTATTCGGATGTGGGGGATGAGG
1 CTTGGGTTTTGGGAGTGGAGTATTCGGATGTGGAGGATGAGG
24924301 CTT
1 CTT
24924304 AGGATAAGGA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.14, C:0.06, G:0.47, T:0.33
Consensus pattern (42 bp):
CTTGGGTTTTGGGAGTGGAGTATTCGGATGTGGAGGATGAGG
Found at i:24924471 original size:48 final size:48
Alignment explanation
Indices: 24924343--24924867 Score: 327
Period size: 48 Copynumber: 10.8 Consensus size: 48
24924333 TGGGATGTGA
* * * * * * *
24924343 TGGTGGTGGAGGGGACTTGT-AGACATAAGGTGCAGGTGGGGAGCGAAC
1 TGGTGGTGGTGGAGACTTGTGA-ATATAAGGAGGAGGTGGGGAGTGGAC
* * * * * * *
24924391 TGGTGGGGGTGGAGATTTATGGACATATGGAGGAGGTGGGGAGTGGAT
1 TGGTGGTGGTGGAGACTTGTGAATATAAGGAGGAGGTGGGGAGTGGAC
* * * *
24924439 TGGTGGTGGTGGAGACTTGTGAATATAAGGAGG-GGATGGTGAATGAAT
1 TGGTGGTGGTGGAGACTTGTGAATATAAGGAGGAGG-TGGGGAGTGGAC
*
24924487 TGGTGGTGGTGGAGACTTGT-AGATATATGGTA-GAGGTGGGGAGTGGAC
1 TGGTGGTGGTGGAGACTTGTGA-ATATAAGG-AGGAGGTGGGGAGTGGAC
* *
24924535 TGGTGGTGGTGGAGACTTGTAGACATAT--GGAGGAGGAGGAGAGTGGAC
1 TGGTGGTGGTGGAGACTTGT-GA-ATATAAGGAGGAGGTGGGGAGTGGAC
* * * * *
24924583 TGGTGGTGGTGGAGACTTGTAAATGTAAGGAGGGGGTGGTGAATGGAC
1 TGGTGGTGGTGGAGACTTGTGAATATAAGGAGGAGGTGGGGAGTGGAC
* * * * *
24924631 TGGTGGTGGTGGAGACTTGTAAATGTAAGGAGGGGGTGGTGAATGGAC
1 TGGTGGTGGTGGAGACTTGTGAATATAAGGAGGAGGTGGGGAGTGGAC
* * * * * * *
24924679 TGGTGGTGGTGGGGACTTAT-AGATGTATGGTGGAGGTGGTGAATGGAC
1 TGGTGGTGGTGGAGACTTGTGA-ATATAAGGAGGAGGTGGGGAGTGGAC
* * * * * * * * * *
24924727 AGGTGGTGGAGGGGACTTAT-ATATGTAAGGAGGTGATGGTGACTTGTGAATA
1 TGGTGGTGGTGGAGACTTGTGA-ATATAAGGAGGAGGTGGGGA---GTGGA-C
* * *
24924779 TAAGGAGGGGGTGGAGATTTGTAGACATAT--GGAGGAGGTGGGGAGTGGAC
1 T--GGTGGTGGTGGAGACTTGT-GA-ATATAAGGAGGAGGTGGGGAGTGGAC
* *
24924829 TGGTGGTGGAGGGGACTTGTAGACATAT--GGAGGAGGTGG
1 TGGTGGTGGTGGAGACTTGT-GA-ATATAAGGAGGAGGTGG
24924868 AGACTTGTAA
Statistics
Matches: 389, Mismatches: 69, Indels: 38
0.78 0.14 0.08
Matches are distributed among these distances:
46 3 0.01
47 6 0.02
48 336 0.86
49 3 0.01
50 6 0.02
51 7 0.02
54 24 0.06
56 4 0.01
ACGTcount: A:0.23, C:0.05, G:0.48, T:0.25
Consensus pattern (48 bp):
TGGTGGTGGTGGAGACTTGTGAATATAAGGAGGAGGTGGGGAGTGGAC
Found at i:24924491 original size:96 final size:97
Alignment explanation
Indices: 24924387--24926433 Score: 1141
Period size: 96 Copynumber: 21.0 Consensus size: 97
24924377 GGTGGGGAGC
* * * * * *
24924387 GAACTGGTGGGGGTGGAGATTTATGGACATATGGAGGAGGTGGGGAGTGGATTGGTGGTGGTGGA
1 GAACTGGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGA
24924452 GACTTGTGA-ATATAAGGAGGGGATGGTGAAT
66 GACTTGTGACATATAAGGAGGGGATGGTGAAT
*
24924483 GAATTGGTGGTGGTGGAGACTTGTAGATATATGGTA-GAGGTGGGGAGTGGACTGGTGGTGGTGG
1 GAACTGGTGGTGGTGGAGACTTGTAGATATATGG-AGGAGGTGGGGAGTGGACTGGTGGTGGTGG
* *
24924547 AGACTTGTAGACATAT--GGAGGAGGA-GGAGAGT
65 AGACTTGT-GACATATAAGGAGG-GGATGGTGAAT
* * * * * * *
24924579 GGACTGGTGGTGGTGGAGACTTGTAAATGTAAGGAGGGGGTGGTGAATGGACTGGTGGTGGTGGA
1 GAACTGGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGA
* * *
24924644 GACTTGT-AAATGTAAGGAGGGGGTGGTGAAT
66 GACTTGTGACATATAAGGAGGGGATGGTGAAT
* * * * * * * * * *
24924675 GGACTGGTGGTGGTGGGGACTTATAGATGTATGGTGGAGGTGGTGAATGGACAGGTGGTGGAGGG
1 GAACTGGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGA
* * * * *
24924740 GACTTAT-ATATGTAAGGAGGTGATGGTGACTTGT
66 GACTTGTGACATATAAGGAGGGGATGGTGA---AT
* * * * * *
24924774 GAATATAAGGAGGGGGTGGAGATTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGA
1 GAA-CT--GGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGT
* * * *
24924839 GGGGACTTGTAGACATATGGAGGAGGTGGAGACTTGTAAAT
63 GGAGACTTGT-GACATAT-AAGGA-G-GG-GA-TGGTGAAT
** * * * *
24924880 GTAAGGAGGGGGTGGTGAATGGACTGGTGGGGGTGGAGATTTGTGGACATATGGAGGAGGTGGGG
1 G-AA-CTGGTGGTGGTGGA--GACT--T----GT--AGATATATGG--------AGGAGGTGGGG
* * * *
24924945 AGTGGACTGGTGGTGGTGGAGACTTGT-AGATATATGGTAGAGG-TGGAGAAT
46 AGTGGACTGGTGGTGGTGGAGACTTGTGACATATAAGG-AGGGGATGGTGAAT
* * * * * * * *
24924996 GGATTGGTGGTGGTGGAGACTTATAAACATATGGTGGAGGTGGGGAGTGAACTGGTGGGGGTGGA
1 GAACTGGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGA
* * *
24925061 GATTTGTGGACATAT--GGAGGAGG-TGGGGAGT
66 GACTTGT-GACATATAAGGAGG-GGATGGTGAAT
* * * * * * * * * *
24925092 GTACTGGTGGTGGTGGGGACTTATGGATGTAAGGTGGTGGTGGTGAATGGACTGGTGGTGGTGGA
1 GAACTGGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGA
* * * *
24925157 GACTTGTAGACAGAT--GGTGGAGG-TGGGGAGT
66 GACTTGT-GACATATAAGGAGG-GGATGGTGAAT
* * * * * * *
24925188 GGATTGGTGGGGGTGGAGATTTGT-GTACATATGGAGGAGGTGGAGAGTGGACTGGCGGTGGTGG
1 GAACTGGTGGTGGTGGAGACTTGTAG-ATATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGG
* ** * * *
24925252 GGACTTGT-ATTTATAGGGAGGGGGTGGAGAAT
65 AGACTTGTGACATATAAGGAGGGGATGGTGAAT
* * * * *
24925284 GGACTGGTGGGGGTGGAGATTTGTGGATATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGG
1 GAACTGGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGA
* * *
24925349 GACTTGTAGACATGT--GGAGGAGGA-GGAGAGT
66 GACTTGT-GACATATAAGGAGG-GGATGGTGAAT
* * * ** * * * * *
24925380 GGACTGGAGGTGGTGGGGACTTGTATTTGTAGGGAGGAGGTGGTGAATGGACTGGTGGTGGTGGT
1 GAACTGGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGA
* * * *
24925445 GACTTGTAGAC--ATAGGGTGGAGG-TGGGGAGT
66 GACTTGT-GACATATAAGGAGG-GGATGGTGAAT
* * * *
24925476 GGACTGGTAGG-GGTGGAGATTTGT-GTACATATGGAGGAGGTGGGGAGTGGGCTGGTGGTGGTG
1 GAACTGGT-GGTGGTGGAGACTTGTAG-ATATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTG
* ** * * *
24925539 GGGACTTGT-ATTTATAGGGAGGGGGTGGAGAAT
64 GAGACTTGTGACATATAAGGAGGGGATGGTGAAT
* * * * * * * * *
24925572 GGACTGGTGGGGGTGGAGATTTGTGGACATATGGAGGAAGTGGGGAGTGAACTGGTGGTGGAGGG
1 GAACTGGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGA
** *
24925637 GACTTGT-ATTTGTAAGGAGGAGG-TGGTGAAT
66 GACTTGTGACATATAAGGAGG-GGATGGTGAAT
* * *
24925668 -AGACTGGTGGTGGTGGAGACTTGTAGACATATGGTGGAGGTGGGGAGTGGACTGGTGGGGGTGG
1 GA-ACTGGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGG
* * *
24925732 AGATTTGTGTACATAT--GGAGGAGG-TGGGGAGT
65 AGACTTGTG-ACATATAAGGAGG-GGATGGTGAAT
* * * * ** * * * * *
24925764 GGACTGGTGGCGGAGGGGACTTGTATTTATAGGGAGGGGGTGGAGAATGGACTGGTGGGGGTGGA
1 GAACTGGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGA
* * *
24925829 GATTTGTGGACATAT--GGAGGAGG-TGGGGAGT
66 GACTTGT-GACATATAAGGAGG-GGATGGTGAAT
* * * ** * * * * *
24925860 GGACTGGTGGTGGAGGGGACTTGTATTTGTAGGGAGGAGGTGGTGAATAGACTGGTGGTGGTGGA
1 GAACTGGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGA
* * * *
24925925 GACTTGTAGAC--ATACGGTGGAGG-TGGGGAGT
66 GACTTGT-GACATATAAGGAGG-GGATGGTGAAT
* * * * * * * * *
24925956 GGATTGGTGGGGGTGGAGATTTGTGGACATATGGAGGAGGTGGGGAGTGGATTGGTGGTGGAGGG
1 GAACTGGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGA
** * *
24926021 GACTTGT-ATTTGTAGGGAGGAGG-TGGTGAAT
66 GACTTGTGACATATAAGGAGG-GGATGGTGAAT
* * * *
24926052 GGACTGGTGGTGGTGGAGACTTGTAGACATATGGTGGAGGTGGGGAGTGGACTGGTGGGGGTGGA
1 GAACTGGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGA
* * * *
24926117 TATTTGTGGACATAT--GGAGGAGG-TGGGGAGT
66 GACTTGT-GACATATAAGGAGG-GGATGGTGAAT
* * * ** * * * * *
24926148 GGACTAGTGGTGGAGGAGACTTGTATTTGTAGGGAGGAGGTGGTGAATGGGCTGGTGGTGGTGGA
1 GAACTGGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGA
* * *
24926213 GACTTGTAGACATAT--GGTGGAGG-TGGGGAGT
66 GACTTGT-GACATATAAGGAGG-GGATGGTGAAT
* * * * * *
24926244 GGACTGGTGGGGGTGGAGATTTGTGGACATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGG
1 GAACTGGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGA
* * * * *
24926309 GACTTAT-AGATGTAGGGTGGTGG-TGGTGAAT
66 GACTTGTGACATATAAGGAGG-GGATGGTGAAT
* * * * * * * * * *
24926340 GGACTGGTGGTGGAGGGGACTTATATATGTAAGGAGGTGGTGGAGAATGGACTGGTGGTGGTGGA
1 GAACTGGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGA
* * * *
24926405 GACTTGT-ACATGTATGGAGGTGATAGTGA
66 GACTTGTGACATATAAGGAGGGGATGGTGA
24926434 TTTAGATGGT
Statistics
Matches: 1563, Mismatches: 311, Indels: 154
0.77 0.15 0.08
Matches are distributed among these distances:
94 16 0.01
95 13 0.01
96 1324 0.85
97 15 0.01
98 18 0.01
99 3 0.00
100 1 0.00
102 55 0.04
104 10 0.01
105 13 0.01
106 4 0.00
107 6 0.00
108 2 0.00
109 5 0.00
110 1 0.00
112 4 0.00
113 2 0.00
114 10 0.01
115 8 0.01
116 6 0.00
118 1 0.00
119 1 0.00
120 3 0.00
121 6 0.00
123 36 0.02
ACGTcount: A:0.21, C:0.04, G:0.49, T:0.25
Consensus pattern (97 bp):
GAACTGGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGA
GACTTGTGACATATAAGGAGGGGATGGTGAAT
Found at i:24924537 original size:144 final size:143
Alignment explanation
Indices: 24924343--24924870 Score: 563
Period size: 144 Copynumber: 3.6 Consensus size: 143
24924333 TGGGATGTGA
* * * * * * * *
24924343 TGGTGGTGGAGGGGACTTGTAGACATAAGGTGCAGGTGGGGAGCGAACTGGTGGGGGTGGAGATT
1 TGGTGGTGGTGGAGACTTGTAGACATAAGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACT
* * * *
24924408 TATGGACATATGGAGGAGGTGGGGAGTGGATTGGTGGTGGTGGAGACTTGTGAATATAAGGAGGG
66 TATAGACATATGGAGGAGGTGGAGAGTGGACTGGTGGTGGTGGAGACTTGT-AATGTAAGGAGGG
24924473 GATGGTGAATGAAT
130 GATGGTGAATGAAT
* *
24924487 TGGTGGTGGTGGAGACTTGTAGATATATGGTA-GAGGTGGGGAGTGGACTGGTGGTGGTGGAGAC
1 TGGTGGTGGTGGAGACTTGTAGACATAAGG-AGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGAC
* *
24924551 TTGTAGACATATGGAGGAGGAGGAGAGTGGACTGGTGGTGGTGGAGACTTGTAAATGTAAGGAGG
65 TTATAGACATATGGAGGAGGTGGAGAGTGGACTGGTGGTGGTGGAGACTTGT-AATGTAAGGAGG
* * *
24924616 GGGTGGTGAATGGAC
129 GGATGGTGAATGAAT
* ** * * * *
24924631 TGGTGGTGGTGGAGACTTGTAAATGTAAGGAGGGGGTGGTGAATGGACTGGTGGTGGTGGGGACT
1 TGGTGGTGGTGGAGACTTGTAGACATAAGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACT
** * * * * * * * *
24924696 TATAGATGTATGGTGGAGGTGGTGAATGGACAGGTGGTGGAGGGGACTTATATATGTAAGGAGGT
66 TATAGACATATGGAGGAGGTGGAGAGTGGACTGGTGGTGGTGGAGACTTGTA-ATGTAAGGAGGG
*
24924761 GATGGTGACTTGTGAAT
130 GATGGTGA---ATGAAT
* * * * * *
24924778 ATAAGGAGGGGGTGGAGATTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGAGGGG
1 -T--GGTGGTGGTGGAGACTTGTAGACATAAGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAG
*
24924843 ACTTGTAGACATATGGAGGAGGTGGAGA
63 ACTTATAGACATATGGAGGAGGTGGAGA
24924871 CTTGTAAATG
Statistics
Matches: 316, Mismatches: 59, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
143 2 0.01
144 237 0.75
147 3 0.01
148 1 0.00
150 73 0.23
ACGTcount: A:0.23, C:0.05, G:0.48, T:0.24
Consensus pattern (143 bp):
TGGTGGTGGTGGAGACTTGTAGACATAAGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACT
TATAGACATATGGAGGAGGTGGAGAGTGGACTGGTGGTGGTGGAGACTTGTAATGTAAGGAGGGG
ATGGTGAATGAAT
Found at i:24924717 original size:75 final size:75
Alignment explanation
Indices: 24924638--24924942 Score: 231
Period size: 75 Copynumber: 4.1 Consensus size: 75
24924628 GACTGGTGGT
*
24924638 GGTGGAGACTTGTAAATGTAAGGAGGGGGTGGTGAATGGACTGGTGGTGGTGGGGACTTATAGAT
1 GGTGGAGACTTGTAAATGTAAGGAGGGGGTGGTGAATGGACTGGTGGTGGTGGGGACTTGTAGAT
* *
24924703 GTATGGTGGA
66 ATATGGAGGA
* * * * * ** * ** * * * * *
24924713 GGTGGTGA-ATGGACAGGTGGTGGAGGGGACTTAT-ATATGTA-AGGAGGTGATGGTGACTTGT-
1 GGTGGAGACTTGTAAATGT-AAGGAGGGG-GTGGTGA-ATGGACTGGTGGTGGTGGGGACTTGTA
* *
24924774 GAATATAAGGAGGG
63 G-ATATATGGAGGA
* * ** * * * * * *
24924788 GGTGGAGATTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGAGGGGACTTGTAGAC
1 GGTGGAGACTTGTAAATGTAAGGAGGGGGTGGTGAATGGACTGGTGGTGGTGGGGACTTGTAGAT
24924853 ATATGGAGGA
66 ATATGGAGGA
* * * * *
24924863 GGTGGAGACTTGTAAATGTAAGGAGGGGGTGGTGAATGGACTGGTGGGGGTGGAGATTTGTGGAC
1 GGTGGAGACTTGTAAATGTAAGGAGGGGGTGGTGAATGGACTGGTGGTGGTGGGGACTTGTAGAT
24924928 ATATGGAGGA
66 ATATGGAGGA
24924938 GGTGG
1 GGTGG
24924943 GGAGTGGACT
Statistics
Matches: 167, Mismatches: 55, Indels: 16
0.70 0.23 0.07
Matches are distributed among these distances:
74 11 0.07
75 144 0.86
76 12 0.07
ACGTcount: A:0.24, C:0.04, G:0.47, T:0.25
Consensus pattern (75 bp):
GGTGGAGACTTGTAAATGTAAGGAGGGGGTGGTGAATGGACTGGTGGTGGTGGGGACTTGTAGAT
ATATGGAGGA
Found at i:24924812 original size:27 final size:26
Alignment explanation
Indices: 24924782--24924876 Score: 74
Period size: 24 Copynumber: 3.7 Consensus size: 26
24924772 GTGAATATAA
*
24924782 GGAGGGGGTGGAGATTTGTAGACATAT
1 GGAGGAGGTGGAGA-TTGTAGACATAT
* * *
24924809 GGAGGAGGTGGGGA--GTGGAC-TGGT
1 GGAGGAGGTGGAGATTGTAGACAT-AT
* *
24924833 GGTGGAGG-GGA-CTTGTAGACATAT
1 GGAGGAGGTGGAGATTGTAGACATAT
24924857 GGAGGAGGTGGAGACTTGTA
1 GGAGGAGGTGGAGA-TTGTA
24924877 AATGTAAGGA
Statistics
Matches: 50, Mismatches: 11, Indels: 14
0.67 0.15 0.19
Matches are distributed among these distances:
23 3 0.06
24 26 0.52
25 4 0.08
27 17 0.34
ACGTcount: A:0.23, C:0.05, G:0.49, T:0.22
Consensus pattern (26 bp):
GGAGGAGGTGGAGATTGTAGACATAT
Found at i:24924982 original size:27 final size:26
Alignment explanation
Indices: 24924952--24925038 Score: 67
Period size: 27 Copynumber: 3.5 Consensus size: 26
24924942 GGGAGTGGAC
*
24924952 TGGTGGTGGTGGAGACTTGTAGATATA
1 TGGTGGAGGTGGAGACTTGTAGA-ATA
* *
24924979 TGGTAGAGGTGGAGA-ATG--G-AT-
1 TGGTGGAGGTGGAGACTTGTAGAATA
* * *
24925000 TGGTGGTGGTGGAGACTTATAAACATA
1 TGGTGGAGGTGGAGACTTGTAGA-ATA
24925027 TGGTGGAGGTGG
1 TGGTGGAGGTGG
24925039 GGAGTGAACT
Statistics
Matches: 45, Mismatches: 9, Indels: 12
0.68 0.14 0.18
Matches are distributed among these distances:
21 13 0.29
22 3 0.07
24 1 0.02
26 4 0.09
27 24 0.53
ACGTcount: A:0.24, C:0.03, G:0.44, T:0.29
Consensus pattern (26 bp):
TGGTGGAGGTGGAGACTTGTAGAATA
Found at i:24925050 original size:144 final size:144
Alignment explanation
Indices: 24924863--24926424 Score: 1478
Period size: 144 Copynumber: 10.8 Consensus size: 144
24924853 ATATGGAGGA
* ** * * * * * * *
24924863 GGTGGAGACTTGTAAATGTAAGGAGGGGGTGGTGAATGGACTGGTGGGGGTGGAGATTTGTGGAC
1 GGTGGAGACTTGTAGACATAGGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACTTGTAGAC
*
24924928 ATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACTTGTAGATATATGGTA-GAGGTGGA
66 ATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACTTGTAGATATATGG-AGGAGGTGGG
*
24924992 GAATGGATTGGTGGT
130 GAATGGACTGGTGGT
* * * * * * * *
24925007 GGTGGAGACTTATAAACATATGGTGGAGGTGGGGAGTGAACTGGTGGGGGTGGAGATTTGTGGAC
1 GGTGGAGACTTGTAGACATAGGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACTTGTAGAC
* * * * * * * * *
24925072 ATATGGAGGAGGTGGGGAGTGTACTGGTGGTGGTGGGGACTTATGGATGTAAGGTGGTGGTGGTG
66 ATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGGGG
24925137 AATGGACTGGTGGT
131 AATGGACTGGTGGT
* * * * * *
24925151 GGTGGAGACTTGTAGACAGATGGTGGAGGTGGGGAGTGGATTGGTGGGGGTGGAGATTTGT-GTA
1 GGTGGAGACTTGTAGACATAGGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACTTGTAG-A
* * * ** * * *
24925215 CATATGGAGGAGGTGGAGAGTGGACTGGCGGTGGTGGGGACTTGTATTTATAGGGAGGGGGTGGA
65 CATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGGG
*
24925280 GAATGGACTGGTGGG
130 GAATGGACTGGTGGT
* * * * *
24925295 GGTGGAGATTTGTGGATATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGGGACTTGTAGAC
1 GGTGGAGACTTGTAGACATAGGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACTTGTAGAC
* * * * * ** * * *
24925360 ATGTGGAGGAGGAGGAGAGTGGACTGGAGGTGGTGGGGACTTGTATTTGTAGGGAGGAGGTGGTG
66 ATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGGGG
24925425 AATGGACTGGTGGT
131 AATGGACTGGTGGT
* * *
24925439 GGTGGTGACTTGTAGACATAGGGTGGAGGTGGGGAGTGGACTGGTAGG-GGTGGAGATTTGT-GT
1 GGTGGAGACTTGTAGACATAGGGAGGAGGTGGGGAGTGGACTGGT-GGTGGTGGAGACTTGTAG-
* * ** * *
24925502 ACATATGGAGGAGGTGGGGAGTGGGCTGGTGGTGGTGGGGACTTGTATTTATAGGGAGGGGGTGG
64 ACATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGG
* *
24925567 AGAATGGACTGGTGGG
129 GGAATGGACTGGTGGT
* * * * * * * ***
24925583 GGTGGAGATTTGTGGACATATGGAGGAAGTGGGGAGTGAACTGGTGGTGGAGGGGACTTGTATTT
1 GGTGGAGACTTGTAGACATAGGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACTTGTAGAC
* * * * * * *
24925648 GTAAGGAGGAGGTGGTGAATAGACTGGTGGTGGTGGAGACTTGTAGACATATGGTGGAGGTGGGG
66 ATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGGGG
* *
24925713 AGTGGACTGGTGGG
131 AATGGACTGGTGGT
* * * * * **
24925727 GGTGGAGATTTGT-GTACATATGGAGGAGGTGGGGAGTGGACTGGTGGCGGAGGGGACTTGTATT
1 GGTGGAGACTTGTAG-ACATAGGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACTTGTAGA
* * * * * * * * *
24925791 TATAGGGAGGGGGTGGAGAATGGACTGGTGGGGGTGGAGATTTGTGGACATATGGAGGAGGTGGG
65 CATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGGG
*
24925856 GAGTGGACTGGTGGT
130 GAATGGACTGGTGGT
* * **** * * *
24925871 GGAGGGGACTTGTATTTGTAGGGAGGAGGTGGTGAATAGACTGGTGGTGGTGGAGACTTGTAGAC
1 GGTGGAGACTTGTAGACATAGGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACTTGTAGAC
* * * * * * *
24925936 ATACGGTGGAGGTGGGGAGTGGATTGGTGGGGGTGGAGATTTGTGGACATATGGAGGAGGTGGGG
66 ATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGGGG
* *
24926001 AGTGGATTGGTGGT
131 AATGGACTGGTGGT
* * **** * *
24926015 GGAGGGGACTTGTATTTGTAGGGAGGAGGTGGTGAATGGACTGGTGGTGGTGGAGACTTGTAGAC
1 GGTGGAGACTTGTAGACATAGGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACTTGTAGAC
* * * * * *
24926080 ATATGGTGGAGGTGGGGAGTGGACTGGTGGGGGTGGATATTTGTGGACATATGGAGGAGGTGGGG
66 ATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGGGG
* *
24926145 AGTGGACTAGTGGT
131 AATGGACTGGTGGT
* **** * * *
24926159 GGAGGAGACTTGTATTTGTAGGGAGGAGGTGGTGAATGGGCTGGTGGTGGTGGAGACTTGTAGAC
1 GGTGGAGACTTGTAGACATAGGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACTTGTAGAC
* * * * *
24926224 ATATGGTGGAGGTGGGGAGTGGACTGGTGGGGGTGGAGATTTGTGGACATATGGAGGAGGTGGGG
66 ATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGGGG
*
24926289 AGTGGACTGGTGGT
131 AATGGACTGGTGGT
* * ** * * * * * * * * *
24926303 GGTGGGGACTTATAGATGTAGGGTGGTGGTGGTGAATGGACTGGTGGTGGAGGGGACTTATATAT
1 GGTGGAGACTTGTAGACATAGGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACTTGTAGAC
* * * * * * *
24926368 GTAAGGAGGTGGTGGAGAATGGACTGGTGGTGGTGGAGACTTGTACATGTATGGAGG
66 ATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACTTGTAGATATATGGAGG
24926425 TGATAGTGAT
Statistics
Matches: 1239, Mismatches: 170, Indels: 18
0.87 0.12 0.01
Matches are distributed among these distances:
143 5 0.00
144 1231 0.99
145 3 0.00
ACGTcount: A:0.20, C:0.05, G:0.50, T:0.25
Consensus pattern (144 bp):
GGTGGAGACTTGTAGACATAGGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACTTGTAGAC
ATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACTTGTAGATATATGGAGGAGGTGGGG
AATGGACTGGTGGT
Found at i:24925051 original size:21 final size:21
Alignment explanation
Indices: 24925027--24925110 Score: 60
Period size: 21 Copynumber: 3.7 Consensus size: 21
24925017 TATAAACATA
24925027 TGGTGGAGGTGGGGAGTGAAC
1 TGGTGGAGGTGGGGAGTGAAC
* * *
24925048 TGGTGGGGGTGGAGATTTGTGGACATA
1 TGGTGGAGGTGGGGA---GT-GA-A-C
* *
24925075 TGGAGGAGGTGGGGAGTGTAC
1 TGGTGGAGGTGGGGAGTGAAC
*
24925096 TGGTGGTGGTGGGGA
1 TGGTGGAGGTGGGGA
24925111 CTTATGGATG
Statistics
Matches: 47, Mismatches: 10, Indels: 12
0.68 0.14 0.17
Matches are distributed among these distances:
21 26 0.55
22 1 0.02
23 1 0.02
24 4 0.09
25 2 0.04
26 1 0.02
27 12 0.26
ACGTcount: A:0.17, C:0.04, G:0.56, T:0.24
Consensus pattern (21 bp):
TGGTGGAGGTGGGGAGTGAAC
Found at i:24925723 original size:21 final size:21
Alignment explanation
Indices: 24925699--24925782 Score: 60
Period size: 21 Copynumber: 3.7 Consensus size: 21
24925689 TGTAGACATA
24925699 TGGTGGAGGTGGGGAGTGGAC
1 TGGTGGAGGTGGGGAGTGGAC
* * *
24925720 TGGTGGGGGTGGAGATTTGTGTAC
1 TGGTGGAGGTGGGGA---GTGGAC
*
24925744 ATATGGAGGAGGTGGGGAGTGGAC
1 ---TGGTGGAGGTGGGGAGTGGAC
* *
24925768 TGGTGGCGGAGGGGA
1 TGGTGGAGGTGGGGA
24925783 CTTGTATTTA
Statistics
Matches: 47, Mismatches: 10, Indels: 12
0.68 0.14 0.17
Matches are distributed among these distances:
21 25 0.53
24 10 0.21
27 12 0.26
ACGTcount: A:0.17, C:0.05, G:0.57, T:0.21
Consensus pattern (21 bp):
TGGTGGAGGTGGGGAGTGGAC
Found at i:24925964 original size:21 final size:21
Alignment explanation
Indices: 24925940--24926022 Score: 67
Period size: 21 Copynumber: 3.7 Consensus size: 21
24925930 GTAGACATAC
24925940 GGTGGAGGTGGGGAGTGGATT
1 GGTGGAGGTGGGGAGTGGATT
* *
24925961 GGTGGGGGTGGAGATTTGTGGACATAT
1 GGTGGAGGTGGGGA---GTGG--AT-T
*
24925988 GGAGGAGGTGGGGAGTGGATT
1 GGTGGAGGTGGGGAGTGGATT
* *
24926009 GGTGGTGGAGGGGA
1 GGTGGAGGTGGGGA
24926023 CTTGTATTTG
Statistics
Matches: 48, Mismatches: 8, Indels: 12
0.71 0.12 0.18
Matches are distributed among these distances:
21 24 0.50
22 2 0.04
24 8 0.17
26 2 0.04
27 12 0.25
ACGTcount: A:0.17, C:0.01, G:0.59, T:0.23
Consensus pattern (21 bp):
GGTGGAGGTGGGGAGTGGATT
Found at i:24926018 original size:24 final size:24
Alignment explanation
Indices: 24925940--24926019 Score: 60
Period size: 24 Copynumber: 3.3 Consensus size: 24
24925930 GTAGACATAC
24925940 GGTGGAGGTGGGGAGTGGATTGGT
1 GGTGGAGGTGGGGAGTGGATTGGT
* * *
24925964 -G-GG-GGTGGAGATTTGTGGACAT-AT
1 GGTGGAGGTGGGGA---GTGGA-TTGGT
*
24925988 GGAGGAGGTGGGGAGTGGATTGGT
1 GGTGGAGGTGGGGAGTGGATTGGT
24926012 GGTGGAGG
1 GGTGGAGG
24926020 GGACTTGTAT
Statistics
Matches: 41, Mismatches: 7, Indels: 16
0.64 0.11 0.25
Matches are distributed among these distances:
21 7 0.17
22 2 0.05
23 2 0.05
24 19 0.46
25 2 0.05
26 2 0.05
27 7 0.17
ACGTcount: A:0.16, C:0.01, G:0.59, T:0.24
Consensus pattern (24 bp):
GGTGGAGGTGGGGAGTGGATTGGT
Found at i:24926162 original size:24 final size:23
Alignment explanation
Indices: 24926081--24926163 Score: 71
Period size: 24 Copynumber: 3.5 Consensus size: 23
24926071 CTTGTAGACA
24926081 TATGGTGGAGGTGGGGAGTGGAC
1 TATGGTGGAGGTGGGGAGTGGAC
* **
24926104 --TGGTGGGGGTGGATATTTGTGGAC
1 TATGGTGGAGGTGGGGA---GTGGAC
*
24926128 ATATGGAGGAGGTGGGGAGTGGAC
1 -TATGGTGGAGGTGGGGAGTGGAC
24926152 TAGTGGTGGAGG
1 TA-TGGTGGAGG
24926164 AGACTTGTAT
Statistics
Matches: 45, Mismatches: 8, Indels: 13
0.68 0.12 0.20
Matches are distributed among these distances:
21 12 0.27
23 2 0.04
24 20 0.44
27 11 0.24
ACGTcount: A:0.18, C:0.04, G:0.54, T:0.24
Consensus pattern (23 bp):
TATGGTGGAGGTGGGGAGTGGAC
Found at i:24926251 original size:21 final size:21
Alignment explanation
Indices: 24926227--24926310 Score: 78
Period size: 21 Copynumber: 3.7 Consensus size: 21
24926217 TGTAGACATA
24926227 TGGTGGAGGTGGGGAGTGGAC
1 TGGTGGAGGTGGGGAGTGGAC
* *
24926248 TGGTGGGGGTGGAGATTTGTGGAC
1 TGGTGGAGGTGGGGA---GTGGAC
*
24926272 ATATGGAGGAGGTGGGGAGTGGAC
1 ---TGGTGGAGGTGGGGAGTGGAC
*
24926296 TGGTGGTGGTGGGGA
1 TGGTGGAGGTGGGGA
24926311 CTTATAGATG
Statistics
Matches: 50, Mismatches: 7, Indels: 12
0.72 0.10 0.17
Matches are distributed among these distances:
21 26 0.52
24 12 0.24
27 12 0.24
ACGTcount: A:0.15, C:0.04, G:0.58, T:0.23
Consensus pattern (21 bp):
TGGTGGAGGTGGGGAGTGGAC
Found at i:24926285 original size:27 final size:26
Alignment explanation
Indices: 24926200--24926286 Score: 76
Period size: 27 Copynumber: 3.5 Consensus size: 26
24926190 GTGAATGGGC
* *
24926200 TGGTGGTGGTGGAGACTTGTAGACATA
1 TGGTGGAGGTGGAGA-TTGTGGACATA
*
24926227 TGGTGGAGGTGGGGA--GTGGAC---
1 TGGTGGAGGTGGAGATTGTGGACATA
*
24926248 TGGTGGGGGTGGAGATTTGTGGACATA
1 TGGTGGAGGTGGAGA-TTGTGGACATA
*
24926275 TGGAGGAGGTGG
1 TGGTGGAGGTGG
24926287 GGAGTGGACT
Statistics
Matches: 47, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
21 13 0.28
24 11 0.23
27 23 0.49
ACGTcount: A:0.18, C:0.05, G:0.52, T:0.25
Consensus pattern (26 bp):
TGGTGGAGGTGGAGATTGTGGACATA
Found at i:24926348 original size:45 final size:45
Alignment explanation
Indices: 24926299--24926400 Score: 141
Period size: 48 Copynumber: 2.2 Consensus size: 45
24926289 AGTGGACTGG
* * *
24926299 TGGTGGTGGGGACTTATAGATGTAGGGTGGTGGTGGTGAATGGAC
1 TGGTGGTGGGGACTTATAGATGTAAGGAGGTGGTGGAGAATGGAC
*
24926344 TGGTGGTGGAGGGGACTTATATATGTAAGGAGGTGGTGGAGAATGGAC
1 TGGTGGT---GGGGACTTATAGATGTAAGGAGGTGGTGGAGAATGGAC
24926392 TGGTGGTGG
1 TGGTGGTGG
24926401 TGGAGACTTG
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
45 9 0.18
48 41 0.82
ACGTcount: A:0.20, C:0.04, G:0.49, T:0.27
Consensus pattern (45 bp):
TGGTGGTGGGGACTTATAGATGTAAGGAGGTGGTGGAGAATGGAC
Found at i:24926448 original size:240 final size:240
Alignment explanation
Indices: 24924932--24926424 Score: 1493
Period size: 240 Copynumber: 6.2 Consensus size: 240
24924922 GTGGACATAT
* * * * *
24924932 GGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACTTGTAGATATATGGTA-GAGGTGGAGAAT
1 GGAGGAGGTGGTGAATGGACTGGTGGTGGTGGAGACTTGTACATATATGG-AGGAGGTGGGGAGT
* * * * *
24924996 GGATTGGTGGTGGTGGAGACTTATAAACATATGGTGGAGGTGGGGAGTGAACTGGTGGGGGTGGA
65 GGACTGGTGGTGGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGGGGTGGA
* * * * * * * * * ** *
24925061 GATTTGTGGACATATGGAGGAGGTGGGGAGTGTACTGGTGGTGGTGGGGACTTATGGATGTAAGG
130 GACTTGTAGATATAGGGAGGAGGTGGGGAATGGACTGGTGGTGGTGGAGACTTGTAGACATATGG
* * * * * * * * *
24925126 TGGTGGTGGTGAATGGACTGGTGGTGGTGGAGACTTGTAGACAG-AT
195 AGGAGGTGGGGAGTGGACTGGTGGTGGAGGGGACTTGTATA-TGTAA
* * * * * * ** * *
24925172 GGTGGAGGTGGGGAGTGGATTGGTGGGGGTGGAGATTTGTGTACATATGGAGGAGGTGGAGAGTG
1 GGAGGAGGTGGTGAATGGACTGGTGGTGGTGGAGACTTGTACATATATGGAGGAGGTGGGGAGTG
* * *** * * * *
24925237 GACTGGCGGTGGTGGGGACTTGTATTTATAGGGAGGGGGTGGAGAATGGACTGGTGGGGGTGGAG
66 GACTGGTGGTGGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGGGGTGGAG
* * * * * *
24925302 ATTTGTGGATATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGGGACTTGTAGACATGTGGA
131 ACTTGTAGATATAGGGAGGAGGTGGGGAATGGACTGGTGGTGGTGGAGACTTGTAGACATATGGA
* * * * * *
24925367 GGAGGAGGAGAGTGGACTGGAGGTGGTGGGGACTTGTATTTGTAG
196 GGAGGTGGGGAGTGGACTGGTGGTGGAGGGGACTTGTATATGTAA
* * * * *
24925412 GGAGGAGGTGGTGAATGGACTGGTGGTGGTGGTGACTTGTAGACATAGGGTGGAGGTGGGGAGTG
1 GGAGGAGGTGGTGAATGGACTGGTGGTGGTGGAGACTTGTACATATATGGAGGAGGTGGGGAGTG
* * *
24925477 GACTGGTAGG-GGTGGAGATTTGT-GTACATATGGAGGAGGTGGGGAGTGGGCTGGTGGTGGTGG
66 GACTGGT-GGTGGTGGAGACTTGTAG-ACATATGGAGGAGGTGGGGAGTGGACTGGTGGGGGTGG
* ** * * * * *
24925540 GGACTTGTATTTATAGGGAGGGGGTGGAGAATGGACTGGTGGGGGTGGAGATTTGTGGACATATG
129 AGACTTGTAGATATAGGGAGGAGGTGGGGAATGGACTGGTGGTGGTGGAGACTTGTAGACATATG
* * *
24925605 GAGGAAGTGGGGAGTGAACTGGTGGTGGAGGGGACTTGTATTTGTAA
194 GAGGAGGTGGGGAGTGGACTGGTGGTGGAGGGGACTTGTATATGTAA
* * * *
24925652 GGAGGAGGTGGTGAATAGACTGGTGGTGGTGGAGACTTGTAGACATATGGTGGAGGTGGGGAGTG
1 GGAGGAGGTGGTGAATGGACTGGTGGTGGTGGAGACTTGTACATATATGGAGGAGGTGGGGAGTG
* * * * *
24925717 GACTGGTGGGGGTGGAGATTTGT-GTACATATGGAGGAGGTGGGGAGTGGACTGGTGGCGGAGGG
66 GACTGGTGGTGGTGGAGACTTGTAG-ACATATGGAGGAGGTGGGGAGTGGACTGGTGGGGGTGGA
** * * * * *
24925781 GACTTGTATTTATAGGGAGGGGGTGGAGAATGGACTGGTGGGGGTGGAGATTTGTGGACATATGG
130 GACTTGTAGATATAGGGAGGAGGTGGGGAATGGACTGGTGGTGGTGGAGACTTGTAGACATATGG
* *
24925846 AGGAGGTGGGGAGTGGACTGGTGGTGGAGGGGACTTGTATTTGTAG
195 AGGAGGTGGGGAGTGGACTGGTGGTGGAGGGGACTTGTATATGTAA
* * * * *
24925892 GGAGGAGGTGGTGAATAGACTGGTGGTGGTGGAGACTTGTAGACATACGGTGGAGGTGGGGAGTG
1 GGAGGAGGTGGTGAATGGACTGGTGGTGGTGGAGACTTGTACATATATGGAGGAGGTGGGGAGTG
* * * * * * * *
24925957 GATTGGTGGGGGTGGAGATTTGTGGACATATGGAGGAGGTGGGGAGTGGATTGGTGGTGGAGGGG
66 GACTGGTGGTGGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGGGGTGGAG
** * * *
24926022 ACTTGTATTTGTAGGGAGGAGGTGGTGAATGGACTGGTGGTGGTGGAGACTTGTAGACATATGGT
131 ACTTGTAGATATAGGGAGGAGGTGGGGAATGGACTGGTGGTGGTGGAGACTTGTAGACATATGGA
* * ** * ** ** *
24926087 GGAGGTGGGGAGTGGACTGGTGGGGGTGGATATTTGTGGACATAT
196 GGAGGTGGGGAGTGGACTGGTGGTGGAGGGGACTTGTATATGTAA
* * * * ** * * * *
24926132 GGAGGAGGTGGGGAGTGGACTAGTGGTGGAGGAGACTTGTATTTGTAGGGAGGAGGTGGTGAATG
1 GGAGGAGGTGGTGAATGGACTGGTGGTGGTGGAGACTTGTACATATATGGAGGAGGTGGGGAGTG
* *
24926197 GGCTGGTGGTGGTGGAGACTTGTAGACATATGGTGGAGGTGGGGAGTGGACTGGTGGGGGTGGAG
66 GACTGGTGGTGGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGGGGTGGAG
* * * * * * * ** * *
24926262 ATTTGTGGACATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGGGACTTATAGATGTAGGGT
131 ACTTGTAGATATAGGGAGGAGGTGGGGAATGGACTGGTGGTGGTGGAGACTTGTAGACATATGGA
* * * *
24926327 GGTGGTGGTGAATGGACTGGTGGTGGAGGGGACTTATATATGTAA
196 GGAGGTGGGGAGTGGACTGGTGGTGGAGGGGACTTGTATATGTAA
* * *
24926372 GGAGGTGGTGGAGAATGGACTGGTGGTGGTGGAGACTTGTACATGTATGGAGG
1 GGAGGAGGTGGTGAATGGACTGGTGGTGGTGGAGACTTGTACATATATGGAGG
24926425 TGATAGTGAT
Statistics
Matches: 1072, Mismatches: 175, Indels: 12
0.85 0.14 0.01
Matches are distributed among these distances:
239 4 0.00
240 1065 0.99
241 3 0.00
ACGTcount: A:0.20, C:0.05, G:0.50, T:0.25
Consensus pattern (240 bp):
GGAGGAGGTGGTGAATGGACTGGTGGTGGTGGAGACTTGTACATATATGGAGGAGGTGGGGAGTG
GACTGGTGGTGGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGGGGTGGAG
ACTTGTAGATATAGGGAGGAGGTGGGGAATGGACTGGTGGTGGTGGAGACTTGTAGACATATGGA
GGAGGTGGGGAGTGGACTGGTGGTGGAGGGGACTTGTATATGTAA
Found at i:24930551 original size:23 final size:23
Alignment explanation
Indices: 24930520--24930568 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
24930510 TATATACATA
* * *
24930520 ATATGTACATGATATGTAAAAAT
1 ATATATACATCATATATAAAAAT
*
24930543 ATATATACATCATATATTAAAAT
1 ATATATACATCATATATAAAAAT
24930566 ATA
1 ATA
24930569 GATATAATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.51, C:0.06, G:0.06, T:0.37
Consensus pattern (23 bp):
ATATATACATCATATATAAAAAT
Found at i:24932429 original size:43 final size:42
Alignment explanation
Indices: 24932368--24932850 Score: 332
Period size: 43 Copynumber: 11.2 Consensus size: 42
24932358 TAGCTTCGAT
* * * *
24932368 CTGTTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGG-GTTAAGGTCTATAAATTCAGC
* *** * *
24932411 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATTGCCTT-TGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGGTCTA-TAAATTCAG-C
* * * * *
24932455 CTGTTTCCCTACTGCTCAGGGTGATAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGG-GTTAAGGTCTATAAATTCAGC
*
24932498 CTGTTACCCTATTGCTTAGGGGTTTAAGGTCTATAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGG-TTAAGGTCTATAAATTCAGC
* * * * ** *
24932541 CTGTTACCCTACTACTTAAGGGTTTAAGGCCCATCATCTTC-GAT
1 CTGTTACCCTACTGCTT-AGGGGTTAAGGTCTAT-AAATTCAG-C
* * * * *
24932585 CTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGGTCTATAAATTCAGC
*
24932628 CTGTTACCCTACTACTTAGGGGGTTAAGGTCTATAAATTCAGC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGGTCTATAAATTCAGC
* * * *
24932671 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCAT-CATCCTC-GAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGGTCTATAAAT--TCAG-C
* * * *
24932715 CTGTTTCCCTACTGCTTAGGGGGTTAAGATTTGTAAATTCAGC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGGTCTATAAATTCAGC
* * * *
24932758 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACATTC-GAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGGTCTAT-AAATTCAG-C
* * * * *
24932802 CTGTTTCCCTACTGC--GGGGGTTAAGATCTGTAAATTTAGC
1 CTGTTACCCTACTGCTTAGGGGTTAAGGTCTATAAATTCAGC
24932842 CTGTTACCC
1 CTGTTACCC
24932851 CCTAAGCCTG
Statistics
Matches: 334, Mismatches: 84, Indels: 47
0.72 0.18 0.10
Matches are distributed among these distances:
40 12 0.04
41 8 0.02
42 16 0.05
43 184 0.55
44 107 0.32
45 7 0.02
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (42 bp):
CTGTTACCCTACTGCTTAGGGGTTAAGGTCTATAAATTCAGC
Found at i:24932514 original size:87 final size:86
Alignment explanation
Indices: 24932365--24932850 Score: 464
Period size: 87 Copynumber: 5.6 Consensus size: 86
24932355 TTATAGCTTC
* *
24932365 GATCTGTTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAG
1 GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAG
*
24932430 GGGTTTAAGGTCCATTGCCTTT
66 GGGTTTAAGGTCCATT-CATTT
* * * *
24932452 GATCTGTTTCCCTACTGCTCAGGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTATTGCTTAG
1 GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAG
* * *
24932517 GGGTTTAAGGTCTA-TAAATT
66 GGGTTTAAGGTCCATTCATTT
* * * * * * ** ** ** * * *
24932537 CAGCCTGTTACCCTACTACTTAAGGGTTTAAGGCCCATCATCTTC-GATCTATTTCCCTACTGCT
1 GA-TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTCAG-CCTGTTACCCTACTGCT
* * ** **
24932601 TAGGGGGTTAAGATCTGTAAATTT
63 TAGGGGTTTAAGGTCCATTCATTT
* * * * *
24932625 -AGCCTGTTACCCTACTACTTAGGGGGTTAAGGTCTATAAATTCAGCCTGTTACCCTACTGCTTA
1 GA-TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTA
* *
24932689 GGGGTTTAAGGCCCA-TCATCCTC
65 GGGGTTTAAGGTCCATTCAT--TT
*
24932712 GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATTTGTAAATTCAGCCTGTTACCCTACTGCTTAG
1 GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAG
* * *
24932777 GGGTTTAAGGCCCATCACATTC
66 GGGTTTAAGGTCCAT-TCATTT
*
24932799 GATCTGTTTCCCTACTGC---GGGGGTTAAGATCTGTAAATTTAGCCTGTTACCC
1 GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCC
24932851 CCTAAGCCTG
Statistics
Matches: 333, Mismatches: 56, Indels: 23
0.81 0.14 0.06
Matches are distributed among these distances:
84 32 0.10
85 5 0.02
86 55 0.17
87 233 0.70
88 5 0.02
89 3 0.01
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (86 bp):
GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAG
GGGTTTAAGGTCCATTCATTT
Found at i:24932586 original size:130 final size:130
Alignment explanation
Indices: 24932368--24933052 Score: 678
Period size: 130 Copynumber: 5.2 Consensus size: 130
24932358 TAGCTTCGAT
* * * *
24932368 CTGTTTCCCTACTGCTTA-GGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGT-TTAAGGTCTATAAATTCAGCCTGTTACCCTACTGCTTAGGG
* *** * * * *
24932432 GTTTAAGGTCCATTGCCTTTGATCTGTTTCCCTACTGCTCAGGGTGATAAGATCTGTAAATTCAG
65 GTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAG
24932497 C
130 C
* * *
24932498 CTGTTACCCTATTGCTTAGGGGTTTAAGGTCTATAAATTCAGCCTGTTACCCTACTACTTAAGGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCTATAAATTCAGCCTGTTACCCTACTGCTTAGGGG
* *
24932563 TTTAAGGCCCATCATCTTCGATCTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGC
66 TTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
* *
24932628 CTGTTACCCTACTACTTAGGGGGTTAAGGTCTATAAATTCAGCCTGTTACCCTACTGCTTAGGGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCTATAAATTCAGCCTGTTACCCTACTGCTTAGGGG
* *
24932693 TTTAAGGCCCATCATCCTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATTTGTAAATTCAGC
66 TTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
* * * * *
24932758 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACATTC-GATCTGTTTCCCTACTGCGGGGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCTAT-AAATTCAG-CCTGTTACCCTACTGC-----
* * * ** * * ** * * * *
24932822 TTA-AGATCTGTAAATTTAGCCTGTTACCCCCTAAGCCTGTTACCCTACTGCTTAGGGGTTTAAG
59 TTAGGGGT-T-T-AA---GGCCCATCATCTTC-GA-TCTGTTTCCCTACTGCTTAGGGGGTTAAG
** ** ** *
24932886 GCCCATCATTTTC-GAT
116 ATCTGT-AAATTCAG-C
* * * * *
24932902 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAAGGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCTATAAATTCAGCCTGTTACCCTACTGCTTAGGGG
* * *
24932967 TTTAAGGCCCATCA-CATTCGATTTGTTTCTCTACTACTTAGGGGGTTAAGATCTGTAAATTCAG
66 TTTAAGGCCCATCATC-TTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAG
24933031 C
130 C
24933032 CTGTTACCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGG
24933053 AGATAAGGCT
Statistics
Matches: 448, Mismatches: 85, Indels: 44
0.78 0.15 0.08
Matches are distributed among these distances:
130 284 0.63
131 49 0.11
132 2 0.00
133 6 0.01
135 2 0.00
136 6 0.01
137 2 0.00
138 6 0.01
139 2 0.00
141 8 0.02
142 1 0.00
143 47 0.10
144 33 0.07
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (130 bp):
CTGTTACCCTACTGCTTAGGGGTTTAAGGTCTATAAATTCAGCCTGTTACCCTACTGCTTAGGGG
TTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
Found at i:24932921 original size:44 final size:44
Alignment explanation
Indices: 24932858--24933061 Score: 155
Period size: 43 Copynumber: 4.7 Consensus size: 44
24932848 CCCCCTAAGC
* **
24932858 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATTTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCAAATTCGAT
* ** ** *
24932902 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTC-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCAAATTCGA-T
* * *
24932945 CTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCACATTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCAAATTCGAT
* * * * ** ** *
24932989 TTGTTTCTCTACTACTTAGGGGGTTAAGATCTGT-AAATTC-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCAAATTCGA-T
* *
24933032 CTGTTACCCTACTGCTTAGGGAGATAAGGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGC
24933062 TTGTGAATTC
Statistics
Matches: 118, Mismatches: 38, Indels: 9
0.72 0.23 0.05
Matches are distributed among these distances:
42 2 0.02
43 58 0.49
44 57 0.48
45 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (44 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCAAATTCGAT
Found at i:24932927 original size:187 final size:189
Alignment explanation
Indices: 24932668--24933040 Score: 651
Period size: 187 Copynumber: 2.0 Consensus size: 189
24932658 CTATAAATTC
24932668 AGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCCTCGATCTGTTTCCCTACTGCTTA
1 AGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCCTCGATCTGTTTCCCTACTGCTTA
* *
24932733 GGGGGTTAAGATTTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACATT
66 GGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCACATT
* *
24932798 CGATCTGTTTC-C-CTACTGCGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCCCTA
131 CGATCTGTTTCTCACTACTGAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCCCTA
**
24932855 AGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATTTTCGATCTGTTTCCCTACTGCTTA
1 AGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCCTCGATCTGTTTCCCTACTGCTTA
24932920 GGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCACATT
66 GGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCACATT
* *
24932985 CGATTTGTTTCTCTACTACTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCC
131 CGATCTGTTTCTC-ACTACTGAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCC
24933041 TACTGCTTAG
Statistics
Matches: 175, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
187 136 0.78
188 1 0.01
190 38 0.22
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (189 bp):
AGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCCTCGATCTGTTTCCCTACTGCTTA
GGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCACATT
CGATCTGTTTCTCACTACTGAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCCCTA
Found at i:24932972 original size:43 final size:43
Alignment explanation
Indices: 24932902--24933052 Score: 160
Period size: 43 Copynumber: 3.5 Consensus size: 43
24932892 CATTTTCGAT
*
24932902 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
* * ** ** * *
24932945 CTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCACATTC-GAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTCAG-C
* * * *
24932989 TTGTTTCTCTACTACTTAGGGGGTTAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
24933032 CTGTTACCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGG
24933053 AGATAAGGCT
Statistics
Matches: 80, Mismatches: 25, Indels: 6
0.72 0.23 0.05
Matches are distributed among these distances:
43 50 0.62
44 30 0.38
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (43 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
Found at i:24933001 original size:87 final size:87
Alignment explanation
Indices: 24932855--24933049 Score: 336
Period size: 87 Copynumber: 2.2 Consensus size: 87
24932845 TTACCCCCTA
* ** *
24932855 AGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATTTTCGATCTGTTTCCCTACTGCTTA
1 AGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCACATTCGATCTGTTTCCCTACTACTTA
24932920 GGGGGTTAAGATCTGTAAATTC
66 GGGGGTTAAGATCTGTAAATTC
* *
24932942 AGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCACATTCGATTTGTTTCTCTACTACTTA
1 AGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCACATTCGATCTGTTTCCCTACTACTTA
24933007 GGGGGTTAAGATCTGTAAATTC
66 GGGGGTTAAGATCTGTAAATTC
24933029 AGCCTGTTACCCTACTGCTTA
1 AGCCTGTTACCCTACTGCTTA
24933050 GGGAGATAAG
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 102 1.00
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (87 bp):
AGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCACATTCGATCTGTTTCCCTACTACTTA
GGGGGTTAAGATCTGTAAATTC
Found at i:24933237 original size:64 final size:64
Alignment explanation
Indices: 24933136--24933259 Score: 212
Period size: 64 Copynumber: 1.9 Consensus size: 64
24933126 ATATCTATGT
*
24933136 TTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAAATAAATGTGATGC
1 TTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAAATAAATGTGATGC
* * *
24933200 TTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAATTAGATGTG
1 TTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAAATAAATGTG
24933260 TTATGAATGC
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (64 bp):
TTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAAATAAATGTGATGC
Found at i:24935398 original size:21 final size:21
Alignment explanation
Indices: 24935367--24935414 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 21
24935357 GGCCATCATA
24935367 AAACTATTAGCATATGCTGTTC
1 AAAC-ATTAGCATATGCTGTTC
*
24935389 AAACATTAGCATATGTTGTTC
1 AAACATTAGCATATGCTGTTC
24935410 AAACA
1 AAACA
24935415 CCTTGCAGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (21 bp):
AAACATTAGCATATGCTGTTC
Found at i:24940638 original size:3 final size:3
Alignment explanation
Indices: 24940632--24940685 Score: 72
Period size: 3 Copynumber: 17.7 Consensus size: 3
24940622 TCTACTTTAA
* * *
24940632 TAT TAT TAT TAT TAT TAT AAT TAT TAT TAC TAT TAC TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
24940680 ATAT TA
1 -TAT TA
24940686 GTATATACTG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
3 41 0.93
4 3 0.07
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:24940798 original size:3 final size:3
Alignment explanation
Indices: 24940790--24940837 Score: 53
Period size: 3 Copynumber: 16.0 Consensus size: 3
24940780 TATATTTCAA
* * *
24940790 TAT TAT TAT TAT AAT TAT TA- TACT TAT TAT TAA TAT TGT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
24940835 TAT
1 TAT
24940838 ATATATGTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
2 2 0.05
3 33 0.89
4 2 0.05
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:24940843 original size:18 final size:18
Alignment explanation
Indices: 24940792--24940857 Score: 52
Period size: 18 Copynumber: 3.8 Consensus size: 18
24940782 TATTTCAATA
24940792 TTATTATTATA-ATTATT-
1 TTATTATTATATA-TATTG
*
24940809 ATACTTATTAT-TAATATTG
1 TTA-TTATTATAT-ATATTG
24940828 TTATTATTATATATA-TG
1 TTATTATTATATATATTG
*
24940845 TT-TTAATATATAT
1 TTATTATTATATAT
24940858 GTATATATCT
Statistics
Matches: 41, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
16 10 0.24
17 6 0.15
18 21 0.51
19 4 0.10
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (18 bp):
TTATTATTATATATATTG
Found at i:24940953 original size:3 final size:3
Alignment explanation
Indices: 24940933--24940983 Score: 61
Period size: 3 Copynumber: 17.0 Consensus size: 3
24940923 TGTATTTCAA
*
24940933 TAT TGT TAT TA- TATT TAT TA- TATT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TA-T TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
24940978 TAT TAT
1 TAT TAT
24940984 AATAGTGTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
2 4 0.10
3 34 0.81
4 4 0.10
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:24941141 original size:11 final size:11
Alignment explanation
Indices: 24941099--24941168 Score: 58
Period size: 11 Copynumber: 6.6 Consensus size: 11
24941089 TATGCTTTGT
24941099 TATA-TACGTA
1 TATATTACGTA
* *
24941109 TATATTATGTG
1 TATATTACGTA
*
24941120 TATTTTA--TA
1 TATATTACGTA
24941129 TATATTACGTA
1 TATATTACGTA
* *
24941140 TATTATTA-TTT
1 TA-TATTACGTA
24941151 TATATTACGTA
1 TATATTACGTA
24941162 TATATTA
1 TATATTA
24941169 AATATCGTAT
Statistics
Matches: 46, Mismatches: 9, Indels: 9
0.72 0.14 0.14
Matches are distributed among these distances:
9 7 0.15
10 9 0.20
11 25 0.54
12 5 0.11
ACGTcount: A:0.34, C:0.04, G:0.07, T:0.54
Consensus pattern (11 bp):
TATATTACGTA
Found at i:24941143 original size:20 final size:22
Alignment explanation
Indices: 24941107--24941168 Score: 76
Period size: 20 Copynumber: 3.0 Consensus size: 22
24941097 GTTATATACG
* *
24941107 TATATATTATGTGTATT-TTA-
1 TATATATTACGTATATTATTAT
24941127 TATATATTACGTATATTATTAT
1 TATATATTACGTATATTATTAT
*
24941149 TTTATATTACGTATA-TATTA
1 TATATATTACGTATATTATTA
24941169 AATATCGTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
20 15 0.41
21 8 0.22
22 14 0.38
ACGTcount: A:0.34, C:0.03, G:0.06, T:0.56
Consensus pattern (22 bp):
TATATATTACGTATATTATTAT
Found at i:24941164 original size:31 final size:31
Alignment explanation
Indices: 24941099--24941164 Score: 73
Period size: 31 Copynumber: 2.2 Consensus size: 31
24941089 TATGCTTTGT
* *
24941099 TATA-TACGTATATATTATGTGTATTTTATA
1 TATATTACGTATATATTATGTGTATATTACA
* *
24941129 TATATTACGTATATTATTAT-TTTATATTACG
1 TATATTACGTATA-TATTATGTGTATATTACA
24941160 TATAT
1 TATAT
24941165 ATTAAATATC
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
30 4 0.13
31 20 0.67
32 6 0.20
ACGTcount: A:0.33, C:0.05, G:0.08, T:0.55
Consensus pattern (31 bp):
TATATTACGTATATATTATGTGTATATTACA
Found at i:24941241 original size:16 final size:16
Alignment explanation
Indices: 24941216--24941246 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24941206 ATATCTTTAA
24941216 TATATATTTATGTAAG
1 TATATATTTATGTAAG
*
24941232 TATATCTTTATGTAA
1 TATATATTTATGTAA
24941247 TATTAGTATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.03, G:0.10, T:0.52
Consensus pattern (16 bp):
TATATATTTATGTAAG
Found at i:24941591 original size:31 final size:29
Alignment explanation
Indices: 24941539--24941599 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 29
24941529 TAATATTTGC
*
24941539 ACATATATTTTATTCTTGTATACACATTTT
1 ACATATATATTATTCTTGTATA-ACATTTT
*
24941569 ACATATAGTATTATT-TTCGTATATCATTTT
1 ACATATA-TATTATTCTT-GTATAACATTTT
24941599 A
1 A
24941600 TTTATTATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
30 16 0.59
31 11 0.41
ACGTcount: A:0.31, C:0.11, G:0.05, T:0.52
Consensus pattern (29 bp):
ACATATATATTATTCTTGTATAACATTTT
Found at i:24941852 original size:14 final size:14
Alignment explanation
Indices: 24941833--24941866 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
24941823 ATGTATATCC
24941833 ATTCATTGTTTTCA
1 ATTCATTGTTTTCA
24941847 ATTCATTGTTTTCA
1 ATTCATTGTTTTCA
*
24941861 TTTCAT
1 ATTCAT
24941867 GTTCAATCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.21, C:0.15, G:0.06, T:0.59
Consensus pattern (14 bp):
ATTCATTGTTTTCA
Found at i:24943507 original size:22 final size:23
Alignment explanation
Indices: 24943477--24943524 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
24943467 TATATACATA
* *
24943477 ATATGTACATGATAT-GTAAAAT
1 ATATATACATCATATAGTAAAAT
*
24943499 ATATATACATCATATATTAAAAT
1 ATATATACATCATATAGTAAAAT
24943522 ATA
1 ATA
24943525 GATATAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 13 0.59
23 9 0.41
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (23 bp):
ATATATACATCATATAGTAAAAT
Found at i:24946608 original size:30 final size:29
Alignment explanation
Indices: 24946549--24946609 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 29
24946539 GATATCAAAA
*
24946549 TTATATATAAATTTTGATTTTATGTAATT
1 TTATATATAAATTTTGATTTGATGTAATT
24946578 TTATATATGAAATTTTGATTTGAT-TCAATT
1 TTATATAT-AAATTTTGATTTGATGT-AATT
24946608 TT
1 TT
24946610 CCTAAATCAC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 9 0.31
30 20 0.69
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.57
Consensus pattern (29 bp):
TTATATATAAATTTTGATTTGATGTAATT
Found at i:24946665 original size:23 final size:23
Alignment explanation
Indices: 24946639--24946684 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
24946629 TATTAAATTA
**
24946639 GCACCATTTTATGTTGATATATG
1 GCACCATTTTACATTGATATATG
*
24946662 GCACCGTTTTACATTGATATATG
1 GCACCATTTTACATTGATATATG
24946685 ACATACATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.41
Consensus pattern (23 bp):
GCACCATTTTACATTGATATATG
Found at i:24947065 original size:24 final size:25
Alignment explanation
Indices: 24947038--24947085 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
24947028 AAATACTGTT
24947038 AATAAAAAAATTTAAAA-TAAAAAA
1 AATAAAAAAATTTAAAACTAAAAAA
* **
24947062 AATATAATTATTTAAAACTAAAAA
1 AATAAAAAAATTTAAAACTAAAAA
24947086 CTACTACATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (25 bp):
AATAAAAAAATTTAAAACTAAAAAA
Found at i:24949426 original size:26 final size:26
Alignment explanation
Indices: 24949397--24949448 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
24949387 AATATTAAGA
24949397 TAAATAATATTTATATTTATCATAAT
1 TAAATAATATTTATATTTATCATAAT
* *
24949423 TAAATAATATTTATTTTTATGATAAT
1 TAAATAATATTTATATTTATCATAAT
24949449 ATTATTTATC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (26 bp):
TAAATAATATTTATATTTATCATAAT
Found at i:24949474 original size:22 final size:22
Alignment explanation
Indices: 24949423--24949474 Score: 79
Period size: 21 Copynumber: 2.4 Consensus size: 22
24949413 TTATCATAAT
* *
24949423 TAAATAATATTTATTTTTATGA
1 TAAATATTATTTATCTTTATGA
24949445 T-AATATTATTTATCTTTATGA
1 TAAATATTATTTATCTTTATGA
24949466 TAAATATTA
1 TAAATATTA
24949475 AATATTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 19 0.70
22 8 0.30
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (22 bp):
TAAATATTATTTATCTTTATGA
Found at i:24950088 original size:17 final size:17
Alignment explanation
Indices: 24950068--24950111 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
24950058 AAAATTTTGT
*
24950068 CTGTTATAAAAAGGTAA
1 CTGTTATAAAAAGATAA
* *
24950085 CTGTTACAAAGAGATAA
1 CTGTTATAAAAAGATAA
*
24950102 TTGTTATAAA
1 CTGTTATAAA
24950112 CCTACCTTTG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.45, C:0.07, G:0.16, T:0.32
Consensus pattern (17 bp):
CTGTTATAAAAAGATAA
Found at i:24955534 original size:26 final size:26
Alignment explanation
Indices: 24955505--24955612 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
24955495 TGATACAAAT
24955505 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
24955531 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
24955557 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
24955583 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
24955609 TGAT
1 TGAT
24955613 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:24959866 original size:18 final size:20
Alignment explanation
Indices: 24959845--24959890 Score: 60
Period size: 18 Copynumber: 2.4 Consensus size: 20
24959835 AAGTGAAATA
24959845 GTGAATTGAAAAT-AGA-AT
1 GTGAATTGAAAATGAGACAT
*
24959863 GTGAAATGAAAATGAGACAT
1 GTGAATTGAAAATGAGACAT
*
24959883 ATGAATTG
1 GTGAATTG
24959891 TGTATTTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 12 0.52
19 3 0.13
20 8 0.35
ACGTcount: A:0.48, C:0.02, G:0.24, T:0.26
Consensus pattern (20 bp):
GTGAATTGAAAATGAGACAT
Found at i:24960062 original size:37 final size:37
Alignment explanation
Indices: 24960021--24960101 Score: 135
Period size: 37 Copynumber: 2.2 Consensus size: 37
24960011 CTGAAATATT
**
24960021 TGGAAATGATATTTACTTGATATATTGAAATGTGACA
1 TGGAAATGATATTTACTTGATATATTGAAAAATGACA
24960058 TGGAAATGATATTTACTTGATATATTGAAAAATGACA
1 TGGAAATGATATTTACTTGATATATTGAAAAATGACA
*
24960095 TGTAAAT
1 TGGAAAT
24960102 ATGTGATTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.41, C:0.05, G:0.17, T:0.37
Consensus pattern (37 bp):
TGGAAATGATATTTACTTGATATATTGAAAAATGACA
Found at i:24969716 original size:3 final size:3
Alignment explanation
Indices: 24969708--24969738 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
24969698 TTATACTACC
*
24969708 TTA TTA TTA TTA TTA TTA TTA TTG TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
24969739 CAATTTTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:24969930 original size:27 final size:25
Alignment explanation
Indices: 24969878--24969939 Score: 61
Period size: 26 Copynumber: 2.4 Consensus size: 25
24969868 TTTGCTGTCC
* *
24969878 TTTTATTTATTTTATAATCAGTTTATT
1 TTTTATTT-TTTTAAAACCAGTTTA-T
*
24969905 TTTTATTTTTTTAAAACCCGTATTAT
1 TTTTATTTTTTTAAAACCAGT-TTAT
*
24969931 TGTTATTTT
1 TTTTATTTT
24969940 ATCATTTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 19 0.63
27 11 0.37
ACGTcount: A:0.24, C:0.06, G:0.05, T:0.65
Consensus pattern (25 bp):
TTTTATTTTTTTAAAACCAGTTTAT
Done.